Citrus Sinensis ID: 041297

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
KIVIARSVRPMHWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQLSRAVRSHWSV
Secondary Structure (PSIPRED)
cEEEEccccccccccccccccccHHHHHHHHHHHccccEEEEEcccHHHHHHccccccccccccccccEEEEEEEHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHccccEEEEccccccccccccccccccccccEEEEcHHHHHHHHHHcccccccccccccccccccccccEEEEEccccHHcHHHHHHHHcccccEEEEEcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccccccccEEEEHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccEEEEEEEEEEEHEEEcccccccccccccEEEccccHHHHHHHHHHHccccEEEEEcccccccccccccccccccccEEEEcHHHHHHHHHHHHHHccccccccHHHccccccccEEEEcccccHHHHHHHHHHccccccEEEEEccccEEEEEEcHcHHcHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHcccEEEEcccccccccEEEHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
kiviarsvrpmhwcdeialGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAAniddhedsagcscigkVCMVDIITflcpcfcsfakdsgivrhlkpsaSLLEAVDLLLGGVqnlvilpagiklqpkpslkstfhndseycwLTQEDLIRYFLNFIgllnptpnqpinshniiddagilaihyddpaafaiPLIAQSHIKQTSVAIVDeegrlvgdispfslnsCDETVAAAIATLLAGDLmaymdcgrPLKDLVRLVKQRLDEKNMVGLLELMEddleissgscsnssssdeesstgsarsarsggysarVVHRseaivcypwSSLMAVIMQALARRDRLRSMakaenpnfcpvRIQAKKQQLSRAVRSHWSV
Flexible Loop (DISEMBL)
kiviarsvrpmhWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGscsnssssdeesstgsarsarsggysarvvhrSEAIVCYPWSSLMAVIMQALARRDRLRSMAkaenpnfcpvriqakkqqlsravrshwsv
Low Complexity Region (SEG)
KIVIARSVRPMHWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEIssgscsnssssdeesstgsarsarsggysarVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQLSRAVRSHWSV
Disordered region (IsUnstruct)
**VIARSVRPMHWCDEIALGQFIHRCHALLALKRLNESYINIWSS*******************SAGCSCIGKVCMVDIITFLCPCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLEL************************************ARVVHRSEAIVCYPWSSLMAVIMQALARRD*************C*********************
Disordered Region (DISOPRED)
****ARSVRPMHWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSA***************SAGCSCIGKVCMVDIITFLCPCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVI*********************EYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR**************************************************************IVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQLSRAVRSHW**
Disordered Region (DISEMBL)
KIVIARSVRPMHWCDEIALGQFIHRCHALLALKRLNESYINIWSS*****************EDSAGCSCIGKVCMVDIITFLCPCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLE*******************************RVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ****************
Disordered Region (DISPRO)
KIVIARSVRPMHWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSA***************SAGCSCIGKVCMVDIITFLCPCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAG***************DSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLE*******************************************SEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQLSR********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KIVIARSVRPMHWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQLSRAVRSHWSV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q84WQ5	391	CBS domain-containing pro	yes	no	0.778	0.754	0.367	4e-48

>sp|Q84WQ5|CBSX5_ARATH CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2

 Score =  192 bits (488), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 197/346 (56%), Gaps = 51/346 (14%)

Query: 28  ALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-- 85
           A+ ALK   ++++++W+ +H             D +++  C C+GK+ M D+I  L    
Sbjct: 33  AIAALKSSEDTFLSVWNCNH-------------DDDNNTECECLGKISMADVICHLSKDH 79

Query: 86  --CFCSF--------AKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSL 135
               C+          K   IV H++PS SL+EA+DL++ G QNL++      +  KP  
Sbjct: 80  DHSLCALNSSVSVLLPKTRSIVLHVQPSCSLIEAIDLIIKGAQNLIV-----PIHTKPYT 134

Query: 136 KSTFHNDS------------EYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDA-G 182
           K   HND+             +CW+TQED+I++ L FI   +P P   ++   +I+    
Sbjct: 135 KKKQHNDNVSVTTTTHSNGQRFCWITQEDIIQFLLGFIAAFSPLPAMSLSDLGVINSTHT 194

Query: 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG-----RLVGDISPFSLNSCDETVAAA 237
           ++A+ Y   A+  +  ++ +   QTSVA+VD EG      L+G+ISP +L  CDET AAA
Sbjct: 195 VVAVDYHSSASAVVSAVSNALAVQTSVAVVDGEGDDPFTSLIGEISPMTLTCCDETAAAA 254

Query: 238 IATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSD 297
           +ATL AGDLMAY+D   P + LV++V+ RL++K ++GL+ L +    +SS S S+  SS+
Sbjct: 255 VATLSAGDLMAYIDGANPPESLVQIVRNRLEDKGLIGLMSLFD---SLSSYSTSSGYSSE 311

Query: 298 EESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
           EE+   +    RS   SAR+  +SEAIVC P SSLMAV++QA+A R
Sbjct: 312 EEAPVRTTSYGRSMSSSARMARKSEAIVCNPKSSLMAVMIQAVAHR 357

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
255556011	396	conserved hypothetical protein [Ricinus	0.815	0.780	0.529	4e-82
224079247	394	predicted protein [Populus trichocarpa]	0.817	0.786	0.513	7e-82
225470342	384	PREDICTED: CBS domain-containing protein	0.791	0.781	0.510	2e-77
449457825	398	PREDICTED: CBS domain-containing protein	0.804	0.766	0.510	4e-75
224125284	391	predicted protein [Populus trichocarpa]	0.807	0.782	0.502	5e-73
356549353	398	PREDICTED: CBS domain-containing protein	0.817	0.778	0.494	1e-69
357446497	396	hypothetical protein MTR_2g013110 [Medic	0.820	0.785	0.467	6e-69
255644848	398	unknown [Glycine max]	0.820	0.781	0.483	1e-67
356555172	395	PREDICTED: LOW QUALITY PROTEIN: CBS doma	0.817	0.784	0.473	3e-67
388520909	389	unknown [Medicago truncatula]	0.767	0.748	0.468	1e-66

>gi|255556011|ref|XP_002519040.1| conserved hypothetical protein [Ricinus communis] gi|223541703|gb|EEF43251.1| conserved hypothetical protein [Ricinus communis]

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 180/340 (52%), Positives = 233/340 (68%), Gaps = 31/340 (9%)

Query: 27  HALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP- 85
            AL  LKR ++ Y+++WS DH+ +K      N  +      C CIGK+CMVDII+FLC  
Sbjct: 31  EALSGLKRSDDPYLSVWSCDHNNKKNYINNNNNSNE-----CRCIGKICMVDIISFLCKE 85

Query: 86  --------------CFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAG----- 126
                              +K  G+VR L+P ASLLEA+DL+L G QNLVI P       
Sbjct: 86  ENLKNLPRALQEPLSSVLVSKVYGLVRPLEPHASLLEAIDLILEGAQNLVI-PVHSPFTR 144

Query: 127 IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAI 186
            KL  + S  ST HN+ EYCWLTQED+IRY LN IGL +P PN  + S NIID   ILA+
Sbjct: 145 KKLIHRTSSYSTLHNNREYCWLTQEDIIRYLLNCIGLFSPIPNHTVESLNIIDTESILAV 204

Query: 187 HYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDL 246
            YD+PA+ A+PLI+QS +KQTSVAI+D EG+L+G+ISP++LNSCDE VAAAIATL AG+L
Sbjct: 205 CYDEPASSALPLISQSLVKQTSVAILDIEGKLIGEISPYTLNSCDELVAAAIATLSAGEL 264

Query: 247 MAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEI---SSGSCSNSSSSDEESSTG 303
           MAY+DCG P +DL+RLVK+RL+E+N+  +LELME++  I   SS   S SSSSDEE   G
Sbjct: 265 MAYVDCGDPPEDLIRLVKERLEERNLEIVLELMEEESGISSSSSSFSSFSSSSDEEFGLG 324

Query: 304 SARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
            + S R  G+S RV  R++AIVC+PWSSL+AV++QA++ R
Sbjct: 325 KSGSFR--GHSTRVARRTDAIVCFPWSSLVAVMIQAISHR 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079247|ref|XP_002305808.1| predicted protein [Populus trichocarpa] gi|222848772|gb|EEE86319.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (794), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 173/337 (51%), Positives = 222/337 (65%), Gaps = 27/337 (8%)

Query: 27  HALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP- 85
            AL ALKR  + ++++WS D   R     +  +D  E    C CIGKVC+ D+I FL   
Sbjct: 31  EALSALKRFGDLFLSVWSCDQHHRCNSPRSIKVDFAE----CKCIGKVCLADVICFLSKE 86

Query: 86  --------------CFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILP-----AG 126
                              +K SG+VRHL+P ASLLEA+DL+L G QNLVI P       
Sbjct: 87  ENLKNPGKALQEPVSLLLNSKVSGLVRHLEPHASLLEAIDLILEGAQNLVI-PLHNPFTR 145

Query: 127 IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAI 186
            KL  K +  ST HN+ EYCWLTQED++RY LN IGL +PTPN  I S NIID      +
Sbjct: 146 KKLISKSTANSTLHNNREYCWLTQEDIVRYLLNSIGLFSPTPNHTIESLNIIDTESFFTV 205

Query: 187 HYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDL 246
           HYDDPAA  +PLI+QS +KQTSVAI+D +G+L+G+ISPF+LN CDETVAAAIATL AG+L
Sbjct: 206 HYDDPAA--LPLISQSLVKQTSVAILDADGKLIGEISPFTLNFCDETVAAAIATLSAGEL 263

Query: 247 MAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSAR 306
           MAY++CG P +DL+ LVK+RL+E+N+   L+L+E++  I S S  +S SS  +   G  R
Sbjct: 264 MAYIECGDPPEDLIMLVKERLEERNLGPALDLIEEESGILSSSSDSSYSSSSDEEFGMVR 323

Query: 307 SARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
           S R  G SARV   +E IVCYPWSSL+AV++QAL+ R
Sbjct: 324 SGRIAGNSARVGRSTETIVCYPWSSLVAVMIQALSHR 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470342|ref|XP_002269338.1| PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera]

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/335 (51%), Positives = 220/335 (65%), Gaps = 35/335 (10%)

Query: 28  ALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC--- 84
           AL ALKR  ++Y+++WS DH+++  K+   +++D      C CIGK+CMVD++ FLC   
Sbjct: 32  ALAALKRSGDAYLSVWSCDHTSKINKS---HLED------CRCIGKICMVDVVCFLCRED 82

Query: 85  -----------PCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVI-----LPAGIK 128
                      P      K  G+VRHLKP++ LLEA+DL+L G QN+VI          K
Sbjct: 83  NLSCPSDALQSPLSLLLPKVPGLVRHLKPNSRLLEAIDLMLEGAQNIVIPIQSRTNPRKK 142

Query: 129 LQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHY 188
           L PKPS  ST HN  E+CWLTQED++R+ LN IG  +P P   I S NIID   I +++Y
Sbjct: 143 LVPKPSFNSTLHNGVEFCWLTQEDVVRFLLNSIGSFSPLPGLTIESLNIIDTENIPSVYY 202

Query: 189 DDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMA 248
            DPA+ A+  I+QS I QTSVA++D+E +LVG+ISPF+L  CDETVAAAIATL AGDLMA
Sbjct: 203 HDPASSALTAISQSLINQTSVAVLDQENKLVGEISPFTLACCDETVAAAIATLSAGDLMA 262

Query: 249 YMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSA 308
           Y+DCG P +DLV+LVK RL+E+ +   L+LM           S SSSS  +   G  R  
Sbjct: 263 YIDCGGPPEDLVQLVKARLEERKLGAFLDLM-------DEEFSYSSSSSSDEEFGFGRRG 315

Query: 309 RSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
            SG YSAR+  RSEAIVCYPWSSLMAV++QALA R
Sbjct: 316 GSGKYSARMARRSEAIVCYPWSSLMAVMIQALAHR 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457825|ref|XP_004146648.1| PREDICTED: CBS domain-containing protein CBSX5-like [Cucumis sativus] gi|449527799|ref|XP_004170897.1| PREDICTED: CBS domain-containing protein CBSX5-like [Cucumis sativus]

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 176/345 (51%), Positives = 226/345 (65%), Gaps = 40/345 (11%)

Query: 28  ALLALKRLNESYINIWS-SDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC-- 84
           AL  L +++E YI++WS  DHS+ K     A+ D H     C C+GKVCMVDII FLC  
Sbjct: 32  ALSILTKIDEGYISVWSCGDHSSSK-----ADSDLH-----CRCVGKVCMVDIICFLCRQ 81

Query: 85  ------------PCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPK 132
                       P      +   +VRHL+P ASL+EA+DL+  GV NLVI P  + +  +
Sbjct: 82  ENLLQPAIGLQSPISVLIPEGFELVRHLEPHASLMEAIDLIHDGVHNLVI-PIKMSISKR 140

Query: 133 PSLK--------STFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGIL 184
            ++         S+ HND EYCWL  ED+IRY LN IGL + T   PINS NIID   IL
Sbjct: 141 KNILKKSLANSISSLHNDQEYCWLAPEDIIRYLLNSIGLFSTTAANPINSFNIIDTNNIL 200

Query: 185 AIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAG 244
           A+ YD+ A   +PLI+Q+ I Q+SVAIVD + +L+G+ISPF+LN CDETV AAIATL AG
Sbjct: 201 AVRYDESALSILPLISQALIHQSSVAIVDLDDKLIGEISPFTLNFCDETVVAAIATLTAG 260

Query: 245 DLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDD-LEISSGSCSNSSSSDEESSTG 303
           +LM Y+DCG P  DLV+LVK+RL+EKN+  +LE +E++ L ISS S S  SSSD+E   G
Sbjct: 261 ELMGYIDCGGPPDDLVQLVKERLEEKNLEAVLEWVEEESLTISSSSSSICSSSDDEFGCG 320

Query: 304 SARSARSG-----GYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
           S+ S         GYSARV+ RSEAIVCYPW+SL+AV++QALA R
Sbjct: 321 SSSSGSGRSGRICGYSARVMRRSEAIVCYPWNSLVAVMIQALAHR 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125284|ref|XP_002329767.1| predicted protein [Populus trichocarpa] gi|222870829|gb|EEF07960.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 169/336 (50%), Positives = 218/336 (64%), Gaps = 30/336 (8%)

Query: 28  ALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC--- 84
           AL ALKR  + ++++WS DH        +  +D  E    C C+GKVC+VD+I FL    
Sbjct: 32  ALSALKRSGDLFLSVWSCDHLHHCNSPISIQVDFEE----CKCVGKVCLVDVICFLSVEE 87

Query: 85  -----------PCFCSF-AKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILP-----AGI 127
                      P      +K  G+VRHL+P A    A+D +LGG  NLVI P        
Sbjct: 88  NLKNPGKALQEPVSVLLNSKVPGLVRHLEPHAR--HAIDAILGGALNLVI-PLRNPFTRK 144

Query: 128 KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIH 187
           KL  K +  ST HN+ EYCWL QED+IRY LN IGL +PTPN  I S  +I       +H
Sbjct: 145 KLVYKSAANSTLHNNREYCWLAQEDIIRYLLNSIGLFSPTPNHTIESLGLIYSESFFTVH 204

Query: 188 YDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLM 247
           YDDPA+ A+PLI+QS IKQTSVAI+D +G+L+G+ISPF+LN CDETVAAAIATL AG+LM
Sbjct: 205 YDDPASSALPLISQSLIKQTSVAILDTDGKLIGEISPFTLNFCDETVAAAIATLSAGELM 264

Query: 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARS 307
           AY+DC  P +DL+RLVK+RL+E+N+   L+L+E++  ISS S S SSSSDEE   G  RS
Sbjct: 265 AYIDCRDPPEDLLRLVKERLEERNLGPALDLIEEESGISSLS-SYSSSSDEE--FGMGRS 321

Query: 308 ARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
               G+SA V   ++  VCYPWSSL+AV++QAL+ R
Sbjct: 322 GGVSGHSAGVRGTAQTTVCYPWSSLVAVMIQALSHR 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549353|ref|XP_003543058.1| PREDICTED: CBS domain-containing protein CBSX5-like [Glycine max]

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 167/338 (49%), Positives = 221/338 (65%), Gaps = 28/338 (8%)

Query: 28  ALLALKRLNESYINIWSSDHSARKRKAAAANIDDHED-SAGCSCIGKVCMVDII------ 80
           AL ALKR++++Y+++W+ +HS  +++     I   E     C+CIGKVCMVDII      
Sbjct: 33  ALAALKRIDDTYVSVWNCNHSFIRKQQP--QIKSQEQLQCCCTCIGKVCMVDIICFLSKP 90

Query: 81  --------TFLCPCFCSFAKDSGI-VRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQP 131
                    FL P       +S + VRHL P+ASLLEA+D++  GVQNLVI P  I+ + 
Sbjct: 91  QNLSSPSAAFLSPISALLHDNSAVLVRHLPPTASLLEAIDVMHEGVQNLVI-PIQIQFES 149

Query: 132 KPSLKSTFHND-SEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDD 190
             S  +  HND + YCWLTQED+ RY LN IG+ +PTP  PIN+  +ID   + A+ YDD
Sbjct: 150 LNS-NNVHHNDNTTYCWLTQEDVFRYLLNSIGVFSPTPGNPINTLGVIDTQNLFAVCYDD 208

Query: 191 PAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYM 250
           PA+  + L+A S + Q+S+AIVD  G+  G+ISP  LNSCDE+V  AIATL AGDL AY+
Sbjct: 209 PASSILDLLALSLLYQSSIAIVDPNGKFGGEISPVMLNSCDESVVPAIATLSAGDLTAYI 268

Query: 251 DCGRPLKDLVRLVKQRLDEK-NMVGLLELMEDDLE----ISSGSCSNSSSSDEESSTGSA 305
           DCG P +DLV+LVK+R+ EK     LLEL+ D+       S  S S+S SSDEE  +G  
Sbjct: 269 DCGGPPEDLVQLVKERVKEKVEEQNLLELLGDETTGTGLTSWSSFSSSCSSDEEFCSG-- 326

Query: 306 RSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
           ++ + GGYSARV  RSEAIVCY WSSL+AV++QALA R
Sbjct: 327 KNWKLGGYSARVGRRSEAIVCYRWSSLVAVMIQALAHR 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446497|ref|XP_003593526.1| hypothetical protein MTR_2g013110 [Medicago truncatula] gi|124360612|gb|ABN08611.1| CBS [Medicago truncatula] gi|355482574|gb|AES63777.1| hypothetical protein MTR_2g013110 [Medicago truncatula]

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 156/334 (46%), Positives = 219/334 (65%), Gaps = 23/334 (6%)

Query: 28  ALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC--- 84
           AL A+K+  ESYI++W+  HS  ++       +D E    C CIGKVCMVDII FLC   
Sbjct: 34  ALNAIKKHAESYISVWNCHHSINRKPPQTLIKEDFE--FHCKCIGKVCMVDIICFLCRPE 91

Query: 85  -----------PCFCSFAKD-SGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPK 132
                      P     A D S +VRH++P+ASLLE +D++  GVQN V++P   + + K
Sbjct: 92  NLSSPAAALRSPVPILLADDRSSLVRHIQPNASLLETIDVMDEGVQN-VVMPISDENKCK 150

Query: 133 PSLKSTFHNDSE-YCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDP 191
                  HND   YCWL+QED++RY LN IG  + TP Q I+  +IID   +  +++DDP
Sbjct: 151 KKENEILHNDKRAYCWLSQEDVMRYLLNSIGTFSDTPAQSIDKLDIIDTQNLYFLYFDDP 210

Query: 192 AAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMD 251
           A+ A+ L+  S + Q+SVA+VD +G+L+G+ISPF LNSCDE    AIATL AGDL+AY+D
Sbjct: 211 ASSALELLTASIVHQSSVAVVDPQGKLIGEISPFMLNSCDEIDVPAIATLSAGDLLAYID 270

Query: 252 CGRPLKDLVRLVKQRLDEKNM-VGLLELM-EDDLEISSGSCSNSSSSDEESSTGSARSAR 309
           CG P +DLV+LVK+RL E+N+    +EL+ E     S  S S++SS ++  S G  ++ +
Sbjct: 271 CGGPPEDLVQLVKERLHEQNLDNAAVELLGEGSELSSWSSFSSTSSEEDICSLG--KNWK 328

Query: 310 SGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
            GG+S+R++ RSEAIVCYPWSSL+AV++QAL+ R
Sbjct: 329 LGGFSSRIMRRSEAIVCYPWSSLVAVMIQALSHR 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644848|gb|ACU22924.1| unknown [Glycine max]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 163/337 (48%), Positives = 218/337 (64%), Gaps = 26/337 (7%)

Query: 28  ALLALKRLNESYINIWSSDHSARKRKAAAANIDDHED-SAGCSCIGKVCMVDII------ 80
           AL ALKR++++Y+++W+ +HS  +++     I   E     C+CIGKVCMVDII      
Sbjct: 33  ALAALKRIDDTYVSVWNCNHSFIRKQQP--QIKSQEQLQCCCTCIGKVCMVDIICFLSKP 90

Query: 81  --------TFLCPCFCSFAKDSGI-VRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQP 131
                    FL P       +S + VRHL P+ SLLEA+D++  GVQNLVI P  I+ + 
Sbjct: 91  QNLSSPSAAFLSPISALLHDNSAVLVRHLPPTTSLLEAIDVMHEGVQNLVI-PIQIQFES 149

Query: 132 KPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDP 191
             S     +N++ YCWLTQED+ RY LN IG+ +PTP  PIN+  +ID   + A+ YDDP
Sbjct: 150 LNSNNVHHNNNTTYCWLTQEDVFRYLLNSIGVFSPTPGNPINTLGVIDTQNLFAVCYDDP 209

Query: 192 AAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMD 251
           A+  + L+A S + Q+S+AIVD  G+  G+ISP  LNSCDE+V  AIATL AGDL AY+D
Sbjct: 210 ASSILDLLALSLLYQSSIAIVDPNGKFGGEISPVMLNSCDESVVPAIATLSAGDLTAYID 269

Query: 252 CGRPLKDLVRLVKQRLDEK-NMVGLLELMEDDLE----ISSGSCSNSSSSDEESSTGSAR 306
           CG P +DLV+LVK+R+ EK     LLEL+ D+       S  S S+S SSDEE  +G  +
Sbjct: 270 CGGPPEDLVQLVKERVKEKVEEQNLLELLGDETTGTGLTSWSSFSSSCSSDEEFCSG--K 327

Query: 307 SARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
           + + GGYSA V  RSEAIVCY WSSL+AV++QALA R
Sbjct: 328 NWKLGGYSAGVGRRSEAIVCYRWSSLVAVMIQALAHR 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555172|ref|XP_003545910.1| PREDICTED: LOW QUALITY PROTEIN: CBS domain-containing protein CBSX5-like [Glycine max]

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 159/336 (47%), Positives = 220/336 (65%), Gaps = 26/336 (7%)

Query: 28  ALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC--- 84
           AL ALKR++++Y+++W+ +HS  +++         ++   C+CIGKVCM+DII FL    
Sbjct: 32  ALAALKRIDDTYVSVWNCNHSFIRKQQPQIQ---SQNQCCCTCIGKVCMLDIICFLSKPQ 88

Query: 85  -----------PCFCSFAKDSGI-VRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPK 132
                      P   +   +S + V HL PSASLLEA+D++  GVQNLVI P   +++  
Sbjct: 89  SLSSPSAALHSPISAALQDNSAVLVLHLPPSASLLEAIDVMQEGVQNLVI-PIQNQVESL 147

Query: 133 PSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPA 192
            S     +N++ YCWLTQED++RY LN IG+ +PTP  PIN+  +ID   + A+ YDDPA
Sbjct: 148 DSNNVHHNNNTTYCWLTQEDVLRYLLNSIGVFSPTPGNPINTLGVIDTKNLFAVCYDDPA 207

Query: 193 AFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDC 252
           +  + L+A S I Q+SVAIVD  G+  G+ISP  LNS DE+V  AIATL AGDL AY+DC
Sbjct: 208 SSILDLLALSLIYQSSVAIVDPNGKFGGEISPVMLNSYDESVVPAIATLSAGDLTAYIDC 267

Query: 253 GRPLKDLVRLVKQRLDEK-NMVGLLELMEDDLE----ISSGSCSNSSSSDEESSTGSARS 307
           G P +DLV+LVK+R+ EK     +LEL+ D+       S  S S+S SSDEE  +G  ++
Sbjct: 268 GGPPEDLVQLVKERVKEKVEEQNMLELLGDETTRTGLTSWSSFSSSCSSDEEFCSG--KN 325

Query: 308 ARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
            + GGYSARV  RSEAIVC+ WSSL+AV++QAL+ R
Sbjct: 326 WKLGGYSARVGRRSEAIVCHRWSSLVAVMIQALSHR 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520909|gb|AFK48516.1| unknown [Medicago truncatula]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 156/333 (46%), Positives = 206/333 (61%), Gaps = 42/333 (12%)

Query: 36  NESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---CFCS--- 89
            ES++++W+ DHS               +   C C+GK+CMVD+I FLC      C    
Sbjct: 41  GESFVSVWNCDHS---------------EFGQCQCVGKICMVDVIVFLCKQENLLCPSKA 85

Query: 90  --------FAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVI-----LPAGI---KLQPKP 133
                   F +  G+V HL+PS+SLL+A+DL+L G QNLV+        G+   KLQ K 
Sbjct: 86  LKASISNVFNEVDGLVVHLEPSSSLLDAIDLILEGAQNLVVPISQTKKGGLSRRKLQQK- 144

Query: 134 SLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAA 193
           SL    HN +E+CWLTQED+IR+ L  IG  +  P Q I+  NII  + +L+I Y  PA+
Sbjct: 145 SLTINSHNGAEFCWLTQEDVIRFLLGSIGRFSALPAQSIDRLNIIS-SDVLSIDYSSPAS 203

Query: 194 FAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCG 253
            A+  I++S  +QTSVAIVD +G  +G+ISPF+L  CDETVAAAI TL AG LMAY+DCG
Sbjct: 204 SAVEAISKSLTQQTSVAIVDGDGTFIGEISPFTLACCDETVAAAITTLSAGGLMAYIDCG 263

Query: 254 RPLKDLVRLVKQRLDEKNMVGLLE---LMEDDLEISSGSCSNSSSSDEESSTGSARSARS 310
           RP +DLVR+VK RL EKN+  LL+   LM       S S S+   S   S T S + ARS
Sbjct: 264 RPPEDLVRVVKARLKEKNLEKLLQEFTLMTSLTGDMSSSSSSDEESPGRSLTRSGKYARS 323

Query: 311 GGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
             YSA+ V ++EAIVC+P SSL+AV+MQA+A R
Sbjct: 324 SSYSAKYVRKAEAIVCHPKSSLIAVMMQAIANR 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2164027	408	AT5G53750 "AT5G53750" [Arabido	0.659	0.612	0.373	1.1e-48
TAIR|locus:2123999	391	CBSX5 "AT4G27460" [Arabidopsis	0.796	0.772	0.330	7.3e-43
TAIR|locus:2206265	425	CBSX6 "AT1G65320" [Arabidopsis	0.300	0.268	0.310	8.7e-05

TAIR|locus:2164027 AT5G53750 "AT5G53750" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 103/276 (37%), Positives = 152/276 (55%)

Query:    92 KDSGIVRHLKPSASLLEAVDLLLGGVQNLV--ILPAGI--KLQPKPSLK----------- 136
             K   +V H++ S SL+EA+DL++ G QNL+  I    I  + Q +  LK           
Sbjct:   101 KSRALVVHVQSSCSLIEAIDLIIKGAQNLIVPIHTKSITKRRQQQKLLKRNVVVSLTNAT 160

Query:   137 STFHNDS-EYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAG-ILAIHYDDPAAF 194
             ST H +S E+CW+TQED+IR+ L+ I + +P P+  I+   +I+    ILA+ Y   AA 
Sbjct:   161 STTHKNSREFCWITQEDIIRFLLDSISVFSPLPSLSISDLGVINSTHTILAVDYYSSAAS 220

Query:   195 AIPLIAQSHIKQTSVAIV----DEEGR---LVGDISPFSLNSCDETVAAAIATLLAGDLM 247
             A+  I+++ +   SVA+V    D+E     L+G+ISP +L  CDET  AA+ATL AGDLM
Sbjct:   221 AVSAISRAILDNVSVAVVGKGCDQEDPCMVLIGEISPMTLACCDETAVAAVATLSAGDLM 280

Query:   248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEIXXXXXXXXXXXXXXXXXXXXXX 307
             +Y+D   P + LV +V+ RL++K MVGL+ L+ D L +                      
Sbjct:   281 SYIDGSGPPESLVGVVRNRLEDKGMVGLISLI-DSLSLSSGSSSDEESPAGKTRMTSSYG 339

Query:   308 XXXXXXXXXVVHRSEAIVCYPWSSLMAVIMQALARR 343
                      +  +S AIVC   SSLMAV++QA+A R
Sbjct:   340 RSVSSAAR-MARKSVAIVCNRKSSLMAVMIQAIAHR 374

GO:0003674 "molecular_function" evidence=ND

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2123999 CBSX5 "AT4G27460" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 112/339 (33%), Positives = 178/339 (52%)

Query:    28 ALLALKRLNESYINIWSSDHSARKR-------KAAAANIDDH--EDSAGCSCIGKVCMVD 78
             A+ ALK   ++++++W+ +H            K + A++  H  +D     C     +  
Sbjct:    33 AIAALKSSEDTFLSVWNCNHDDDNNTECECLGKISMADVICHLSKDHDHSLC----ALNS 88

Query:    79 IITFLCPCFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKP----- 133
              ++ L P      K   IV H++PS SL+EA+DL++ G QNL++ P   K   K      
Sbjct:    89 SVSVLLP------KTRSIVLHVQPSCSLIEAIDLIIKGAQNLIV-PIHTKPYTKKKQHND 141

Query:   134 --SLKSTFH-NDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAG-ILAIHYD 189
               S+ +T H N   +CW+TQED+I++ L FI   +P P   ++   +I+    ++A+ Y 
Sbjct:   142 NVSVTTTTHSNGQRFCWITQEDIIQFLLGFIAAFSPLPAMSLSDLGVINSTHTVVAVDYH 201

Query:   190 DPAAFAIPLIAQSHIKQTSVAIVDEEG-----RLVGDISPFSLNSCDETVAAAIATLLAG 244
               A+  +  ++ +   QTSVA+VD EG      L+G+ISP +L  CDET AAA+ATL AG
Sbjct:   202 SSASAVVSAVSNALAVQTSVAVVDGEGDDPFTSLIGEISPMTLTCCDETAAAAVATLSAG 261

Query:   245 DLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEIXXXXXXXXXXXXXXXXXXX 304
             DLMAY+D   P + LV++V+ RL++K ++GL+ L +    +                   
Sbjct:   262 DLMAYIDGANPPESLVQIVRNRLEDKGLIGLMSLFDS---LSSYSTSSGYSSEEEAPVRT 318

Query:   305 XXXXXXXXXXXXVVHRSEAIVCYPWSSLMAVIMQALARR 343
                         +  +SEAIVC P SSLMAV++QA+A R
Sbjct:   319 TSYGRSMSSSARMARKSEAIVCNPKSSLMAVMIQAVAHR 357

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2206265 CBSX6 "AT1G65320" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
 Identities = 37/119 (31%), Positives = 59/119 (49%)

Query:   132 KPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDP 191
             +P+   T   D ++C L++ED+IR+ +  +G L P P   I++  II+      I    P
Sbjct:   175 RPTTSMTSSRD-KFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQ-NYNFIEASLP 232

Query:   192 AAFAI--PLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAA-AIATLLAGDLM 247
             A  A   PL   S I        +++ +++G+IS   L  CD   AA A+A L AG  +
Sbjct:   233 AIEATRRPLCDPSAIAVLEQTENEQQFKIIGEISASKLWKCDYLAAAWALANLYAGQFV 291

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00040536 hypothetical protein (395 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	8e-05

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 29/132 (21%)

Query: 100 LKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 159
           +  +ASL +A+++L  G  + V +           +            L+Q  L+ +   
Sbjct: 6   VPSTASLFQAIEILGSGGIHRVAVTEE----ESGEVIGI---------LSQRRLVEFLWE 52

Query: 160 ---FIGLLNPTPNQP-----INSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAI 211
                  L+P    P     I + ++I      +I+ D P   A+ L+    I  +SVA+
Sbjct: 53  NARSFPGLDPLYPIPLRDLTIGTSDVI------SINGDQPLIDALHLMHNEGI--SSVAV 104

Query: 212 VDEEGRLVGDIS 223
           VD +G L+G+IS
Sbjct: 105 VDNQGNLIGNIS 116

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.93
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.76
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.53
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.48
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.35
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.34
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.27
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.25
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.25
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.23
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.22
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.2
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.2
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.2
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.19
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.19
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.16
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.12
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.12
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.1
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.1
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.07
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.05
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.05
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.05
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.05
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.04
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.04
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.02
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.02
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.01
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.01
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.01
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.99
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.98
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.98
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.98
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.96
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.95
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.94
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.94
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.93
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.92
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.91
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.91
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.89
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.87
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.87
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.86
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.84
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.83
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.83
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.83
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.8
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.79
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.79
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.78
COG0517	117	FOG: CBS domain [General function prediction only]	97.77
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.73
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.73
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.73
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.71
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.68
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.68
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.68
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.66
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.66
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.65
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.65
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.63
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.62
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.62
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.62
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.61
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.6
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.59
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.59
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.57
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.55
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.54
COG2524	294	Predicted transcriptional regulator, contains C-te	97.54
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.53
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.53
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.53
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.5
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.5
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.5
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.49
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.49
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.49
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.49
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.46
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.43
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.42
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.41
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.41
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.41
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.39
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.39
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.39
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.38
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.36
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.35
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.34
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.33
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.33
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.32
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.29
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.28
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.25
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.25
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.24
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.24
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.24
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.23
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.22
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.21
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.19
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.18
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.17
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.15
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.15
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.15
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.11
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.11
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.1
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.1
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.08
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.08
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.08
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.08
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.07
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.07
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.05
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.04
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.03
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.0
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.0
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.95
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	96.95
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	96.94
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	96.91
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	96.91
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	96.89
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.89
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	96.85
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.8
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.8
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	96.79
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.75
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	96.74
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.67
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.67
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	96.66
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	96.66
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	96.59
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.5
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.49
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.44
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.43
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.42
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.28
COG2524	294	Predicted transcriptional regulator, contains C-te	96.12
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	96.1
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	95.97
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	95.96
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	95.94
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	95.92
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	95.88
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	95.69
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	95.48
PRK11573	413	hypothetical protein; Provisional	95.24
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	94.83
COG0517	117	FOG: CBS domain [General function prediction only]	94.82
COG3448	382	CBS-domain-containing membrane protein [Signal tra	94.2
COG1253	429	TlyC Hemolysins and related proteins containing CB	94.07
COG2905	610	Predicted signal-transduction protein containing c	94.07
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	94.06
COG3620	187	Predicted transcriptional regulator with C-termina	93.53
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	93.26
COG2905	610	Predicted signal-transduction protein containing c	90.05
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	89.86
COG3620	187	Predicted transcriptional regulator with C-termina	86.62
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	83.86

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.93  E-value=3.7e-25  Score=221.57  Aligned_cols=248  Identities=21%  Similarity=0.285  Sum_probs=194.7

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      +-+-|+..+.+.+|+++|..+...+.|+|+.+                    .++++||++|.|++.++.+         
T Consensus        77 ~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~--------------------~~~~~g~~~~~d~i~~~~~~~~~~~~~~  136 (381)
T KOG1764|consen   77 KLVVFDTKLSVKKAFNALVQNGVRAAPLWDSK--------------------KQQFVGMLTITDFITVLLRYYKSKSSLD  136 (381)
T ss_pred             eeEEeeCCCcHHHHHHHHHhhceeeeccccCc--------------------cceeEEEEEHHHHHHHHHHhhccCCcHH
Confidence            45678899999999999999999999999965                    3689999999999999985         


Q ss_pred             ---------------ccccccCC-CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEe
Q 041297           86 ---------------CFCSFAKD-SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWL  148 (379)
Q Consensus        86 ---------------VS~li~~~-~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~L  148 (379)
                                     +-.+.... ...+.-+.|..+++++...+. .++||+.|++...              +.--+.|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~--------------~~v~~il  202 (381)
T KOG1764|consen  137 NIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET--------------GEVLYIL  202 (381)
T ss_pred             HHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccc--------------cceeeeh
Confidence                           11122221 123488999999999998888 7999999977211              1334599


Q ss_pred             eHHHHHHHHHhhhcccC--CCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccc
Q 041297          149 TQEDLIRYFLNFIGLLN--PTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFS  226 (379)
Q Consensus       149 TQeDVvRFLl~~ig~l~--p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~  226 (379)
                      ||--|++|+-++.+.|-  ++..+|+.+||+..-+++..+..+.|+++|++.|+..  ..+|+||||..|+++|.+|-+|
T Consensus       203 t~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~--~is~lpvV~~~g~~v~~~s~~D  280 (381)
T KOG1764|consen  203 TQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSER--RISALPVVDENGKKVGNYSRFD  280 (381)
T ss_pred             hHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhc--CcCcceEEcCCCceecceehhh
Confidence            99999999999999995  8889999999999977799999999999999999986  4599999999998899999999


Q ss_pred             cCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCC
Q 041297          227 LNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSAR  306 (379)
Q Consensus       227 L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~  306 (379)
                      ...     +..-.+.+..+..             . +..                                         
T Consensus       281 v~~-----l~~~~~~~~~~~~-------------~-l~~-----------------------------------------  300 (381)
T KOG1764|consen  281 VIH-----LAREGTYNNLDLS-------------C-LSE-----------------------------------------  300 (381)
T ss_pred             hhh-----hhhcCccCccchh-------------H-HHH-----------------------------------------
Confidence            876     1111111110000             0 000                                         


Q ss_pred             cCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          307 SARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       307 ~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                           ..+.+.-+..+.++|+++|||.+||+|+++|||||+||||++|.++|||+.-
T Consensus       301 -----~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLs  352 (381)
T KOG1764|consen  301 -----ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLS  352 (381)
T ss_pred             -----HhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHH
Confidence                 0001112345579999999999999999999999999999999999999863

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.76  E-value=5.6e-08  Score=79.20  Aligned_cols=115  Identities=23%  Similarity=0.370  Sum_probs=86.0

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCC---Cc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPN---QP  171 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~---~S  171 (379)
                      +..+.+++++-+|++.|. ++.++++|+++. .+-.               =++|+.|+++++............   ..
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~---------------Giv~~~dl~~~~~~~~~~~~~~~~~~~~~   67 (123)
T cd04627           3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVI---------------GILSQRRLVEFLWENARSFPGLDPLYPIP   67 (123)
T ss_pred             ceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEE---------------EEEEHHHHHHHHHHhHHhccchhhhhhhh
Confidence            567899999999999999 578899987754 2210               189999999998765432211111   11


Q ss_pred             ccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          172 INSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       172 I~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      +....+...+ +..+..++++.+|++.|.+.  +.+.+||||.+|+++|-|+..+|+-
T Consensus        68 ~~~~~~~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~~vGiit~~di~~  122 (123)
T cd04627          68 LRDLTIGTSD-VISINGDQPLIDALHLMHNE--GISSVAVVDNQGNLIGNISVTDVRL  122 (123)
T ss_pred             hhhcccCcCC-ceEeCCCCCHHHHHHHHHHc--CCceEEEECCCCcEEEEEeHHHhhc
Confidence            2222244666 99999999999999999885  4588999999999999999998863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=4.9e-07  Score=74.13  Aligned_cols=115  Identities=21%  Similarity=0.239  Sum_probs=83.9

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCC-----
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQ-----  170 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~-----  170 (379)
                      +..++|++++-||++.|. +|+..++|+++.-+-               .=++|+.|+.+++.+.-.... .+..     
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~---------------~Giv~~~dl~~~~~~~~~~~~-~~~~~~~~~   66 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKL---------------IGNISASDLKGLLLSPDDLLL-YRTITFKEL   66 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCCCcccEECCCCcE---------------EEEEEHHHhhhhhcCcchhhc-ccchhhhhh
Confidence            457899999999999988 578888887543111               118999999998865322111 1110     


Q ss_pred             --ccc-ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297          171 --PIN-SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC  230 (379)
Q Consensus       171 --SI~-sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C  230 (379)
                        .+. ......++ +..++.+++..+|+++|.+.  +...+||||.+|+++|-|+..+|-.|
T Consensus        67 ~~~~~~~~~~~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~l~Vvd~~~~~~Giit~~dil~~  126 (126)
T cd04642          67 SEKFTDSDGVKSRP-LITCTPSSTLKEVITKLVAN--KVHRVWVVDEEGKPIGVITLTDIISI  126 (126)
T ss_pred             hhhcccccccccCC-CeEECCCCcHHHHHHHHHHh--CCcEEEEECCCCCEEEEEEHHHHhcC
Confidence              011 22334566 88999999999999999875  44679999999999999999999877

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=6.7e-07  Score=71.97  Aligned_cols=93  Identities=20%  Similarity=0.318  Sum_probs=75.7

Q ss_pred             cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecccccccccCCCCc
Q 041297           17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCFCSFAKDSGI   96 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~VS~li~~~~gl   96 (379)
                      +++....|+.+|++.+.+.+...+||++.+                    .++++|+|+.-|++-.+.            
T Consensus         4 ~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~--------------------~~~~~Givt~~Dl~~~~~------------   51 (98)
T cd04618           4 VVFDTKLPVKKAFNALVENGIRSAPLWDSR--------------------KQQFVGMLTITDFILILR------------   51 (98)
T ss_pred             EEECCCCcHHHHHHHHHHcCCceEEEEeCC--------------------CCEEEEEEEHHHHhhhee------------
Confidence            467788999999999999999999999842                    246999999999875332            


Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                      +.++.|+++|.||++.|. +|+++++|+++. .+-               .=.+|+.|+++|
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~---------------~giit~~d~~~~   98 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTG---------------LYILTSRRILKF   98 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCc---------------eEEeehhhhhcC
Confidence            678999999999999998 799999998754 221               128899998875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=4.5e-06  Score=67.28  Aligned_cols=107  Identities=20%  Similarity=0.271  Sum_probs=83.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN  173 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~  173 (379)
                      +-.+.|++++.||++.|. .|.+.++|+++.  +..                 ++|+.|+.+.+.+.-+   ..+..++.
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G-----------------~vt~~dl~~~~~~~~~---~~~~~~v~   62 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAG-----------------VLTKTDVVRQMGRCGG---PGCTAPVE   62 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEE-----------------EEehHHHHHHHhhcCC---CcccCCHH
Confidence            457899999999999998 577888887542  222                 9999999997754111   22344555


Q ss_pred             ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ++  .+++ +..+..+++..+|++.|.+.  +...+||||.+|+++|-|+..++-
T Consensus        63 ~~--~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~~~Gvi~~~dl~  112 (114)
T cd04619          63 NV--MTRA-VVSCRPGDLLHDVWQVMKQR--GLKNIPVVDENARPLGVLNARDAL  112 (114)
T ss_pred             HH--hcCC-CeeECCCCCHHHHHHHHHHc--CCCeEEEECCCCcEEEEEEhHhhc
Confidence            54  4566 88899999999999999885  458899999999999999988874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.34  E-value=4.8e-06  Score=66.58  Aligned_cols=108  Identities=14%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             eEEeCCCCchhHHHHHHh-cC-ccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GG-VQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G-~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      +..++|++++-+|++.|. ++ ...++|+++.-+-               +=++|+.|+++++.+..      ...++.+
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~dl~~~~~~~~------~~~~v~~   61 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRY---------------VGIISLADLRAIPTSQW------AQTTVIQ   61 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcE---------------EEEEEHHHHHHHHHhhc------cccchhh
Confidence            457899999999999986 43 7777777542111               12999999999875321      1345665


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +--.... +..+..+++..+|++.|++.  +...+|||+.+|+++|-++..++-
T Consensus        62 ~~~~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~l~Vv~~~~~~~Gvl~~~di~  112 (114)
T cd04801          62 VMTPAAK-LVTVLSEESLAEVLKLLEEQ--GLDELAVVEDSGQVIGLITEADLL  112 (114)
T ss_pred             hhccccc-ceEECCCCcHHHHHHHHHHC--CCCeeEEEcCCCcEEEEEecccee
Confidence            4322234 67899999999999999986  458899999999999999988874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.27  E-value=7.3e-06  Score=65.71  Aligned_cols=108  Identities=18%  Similarity=0.262  Sum_probs=82.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      +..++|++++-+|++.|. ++.+.++|+++. .+-               +=.+|..|+.+++....   ......++.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---------------~G~v~~~dl~~~~~~~~---~~~~~~~v~~   64 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDA---------------YGIVTMRDILKKVVAEG---RDPDRVNVYE   64 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcE---------------EEEEehHHHHHHHHhCC---CCCCccCHHH
Confidence            467899999999999998 578888776543 221               12899999999886631   1223345555


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +  .+++ +..++.+++..+|++.|.+.  +...+||||. |+++|=|+..+|-
T Consensus        65 ~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vvd~-~~~~Gvi~~~dl~  112 (114)
T cd04630          65 I--MTKP-LISVSPDMDIKYCARLMERT--NIRRAPVVEN-NELIGIISLTDIF  112 (114)
T ss_pred             H--hcCC-CeeECCCCCHHHHHHHHHHc--CCCEeeEeeC-CEEEEEEEHHHhh
Confidence            5  3566 89999999999999999875  4478999987 9999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.25  E-value=6.3e-06  Score=66.31  Aligned_cols=91  Identities=15%  Similarity=0.230  Sum_probs=74.6

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceE-EeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYC-WLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC-~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      +..++|++++-||.+.|. ++.+.++|+++.-               .+|+ ++|..|+++.+.                
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~---------------~~~~Givt~~Dl~~~~~----------------   51 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRK---------------QQFVGMLTITDFILILR----------------   51 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEeCCC---------------CEEEEEEEHHHHhhhee----------------
Confidence            578999999999999998 5677888776421               1233 999999988543                


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~  228 (379)
                              +..+.+++++.+|++.|.+.  +...+||||.+ |+++|=|+-.|+-
T Consensus        52 --------~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~~~~giit~~d~~   96 (98)
T cd04618          52 --------LVSIHPERSLFDAALLLLKN--KIHRLPVIDPSTGTGLYILTSRRIL   96 (98)
T ss_pred             --------eEEeCCCCcHHHHHHHHHHC--CCCEeeEEECCCCCceEEeehhhhh
Confidence                    67899999999999999885  56899999997 9999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.25  E-value=7e-06  Score=66.05  Aligned_cols=106  Identities=21%  Similarity=0.217  Sum_probs=80.1

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      ...+++++++-+|++.|. ++.++++|+++..+               -+-++|..|+.+...+      .....++.++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~---------------~~G~v~~~dl~~~~~~------~~~~~~v~~~   61 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDEENK---------------VLGQVTLSDLLEIGPN------DYETLKVCEV   61 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCC---------------EEEEEEHHHHHhhccc------cccccChhhe
Confidence            356899999999999998 67888888764221               1238999999884221      1123446665


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        ...+ +..+..++++.+|++.|.+.  +...+||||.+|+++|-|+-.++-
T Consensus        62 --~~~~-~~~v~~~~~l~~al~~m~~~--~~~~lpVvd~~~~~~Giit~~di~  109 (111)
T cd04603          62 --YIVP-VPIVYCDSKVTDLLRIFRET--EPPVVAVVDKEGKLVGTIYERELL  109 (111)
T ss_pred             --eecC-CcEECCCCcHHHHHHHHHHc--CCCeEEEEcCCCeEEEEEEhHHhh
Confidence              3556 78899999999999999885  447899999999999999988763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.23  E-value=1e-05  Score=63.99  Aligned_cols=104  Identities=21%  Similarity=0.303  Sum_probs=80.5

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      +..+++++++.|+++.|. +++.+++|++++ +..                 ++|+.|+++++.+...      ..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G-----------------~v~~~~l~~~~~~~~~------~~~v~~   59 (110)
T cd04588           3 LITLNPNATLREAARLFNTHHIHGAPVVDDGKLVG-----------------IVTLSDIAHAIARGLE------LAKVKD   59 (110)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEE-----------------EEEHHHHHHHHhcccc------ccCHHH
Confidence            456899999999999988 588888887651 122                 8999999998754321      133444


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        +.+.+ +..|..+++..++++.|.+.  +...++|++.+|+++|-|+..+|-
T Consensus        60 --~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~i~~~dl~  108 (110)
T cd04588          60 --VMTKD-VITIDEDEQLYDAIRLMNKH--NVGRLIVTDDEGRPVGIITRTDIL  108 (110)
T ss_pred             --HhcCC-ceEECCCCCHHHHHHHHHhc--CCCEEEEECCCCCEEEEEEhHHhh
Confidence              24566 89999999999999999764  447899999999999999988774

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=4.8e-06  Score=67.52  Aligned_cols=113  Identities=16%  Similarity=0.193  Sum_probs=79.9

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|+++|.+.  ....+||++.+|+++|-++-.+|...-..          +++    +.  +...+.  
T Consensus         3 ~~~i~~~~~l~~a~~~~~~~--~~~~~pVv~~~~~~~Giv~~~dl~~~~~~----------~~~----~~--~~~~~~--   62 (120)
T cd04641           3 IATARPDTPLIDVLDMLVER--RVSALPIVDENGKVVDVYSRFDVINLAKE----------GAY----NN--LDLTVG--   62 (120)
T ss_pred             cEEEcCCCCHHHHHHHHHHc--CCCeeeEECCCCeEEEEEeHHHHHHHHhc----------Ccc----cc--ccCCHH--
Confidence            78899999999999999876  45899999999999999987776541000          000    00  000000  


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                    +.+                            .      .+........+|.+..+|.++|.++..+
T Consensus        63 --------------~~~----------------------------~------~~~~~~~~~~~v~~~~~l~~~~~~m~~~   94 (120)
T cd04641          63 --------------EAL----------------------------E------RRSQDFEGVRTCSPDDCLRTIFDLIVKA   94 (120)
T ss_pred             --------------HHH----------------------------h------hcccCCCCCeEEcCCCcHHHHHHHHHhc
Confidence                          000                            0      0000113457999999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +++++=|+|++|.++|+|+.+
T Consensus        95 ~~~~l~Vvd~~~~~~Givt~~  115 (120)
T cd04641          95 RVHRLVVVDENKRVEGIISLS  115 (120)
T ss_pred             CccEEEEECCCCCEEEEEEHH
Confidence            999999999999999999854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=8.3e-06  Score=64.56  Aligned_cols=107  Identities=24%  Similarity=0.354  Sum_probs=82.6

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      ...++|++++-|+++.|. .|..++.|+++..+-               +=|+|+.|+.+++....      ...++.++
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~---------------~G~v~~~~l~~~~~~~~------~~~~v~~~   61 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQHEFPVVDGDGHL---------------VGLLTRDDLIRALAEGG------PDAPVRGV   61 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcE---------------EEEeeHHHHHHHHHhcC------CCCcHHHH
Confidence            457899999999999998 578888887642111               12999999999887532      22345543


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                        ...+ +..++.+++..+|+++|.+.  +...+||++.+|+++|-++..||..
T Consensus        62 --~~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          62 --MRRD-FPTVSPSATLDAVLRLMQQG--GAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             --hcCC-CcEECCCCcHHHHHHHHHhc--CCceeeEEcCCCCEEEEEEHHHhhc
Confidence              4566 88999999999999999875  3478999999899999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=1.1e-05  Score=65.38  Aligned_cols=111  Identities=19%  Similarity=0.201  Sum_probs=80.2

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc-
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS-  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s-  174 (379)
                      +..++|++++-||++.|. .|.++++|+++..+-               .=++|..|+++++....-.   ....++.+ 
T Consensus         3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~---------------~Giv~~~dl~~~~~~~~~~---~~~~~~~~~   64 (120)
T cd04641           3 IATARPDTPLIDVLDMLVERRVSALPIVDENGKV---------------VDVYSRFDVINLAKEGAYN---NLDLTVGEA   64 (120)
T ss_pred             cEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeE---------------EEEEeHHHHHHHHhcCccc---cccCCHHHH
Confidence            467899999999999998 688888887642111               1189999999987543210   11112221 


Q ss_pred             ---cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 ---HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 ---LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                         ...-..+ +..+..++++.++++.|.+.  +...+||||.+|+++|=||-.++-
T Consensus        65 ~~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~~~~~Givt~~di~  118 (120)
T cd04641          65 LERRSQDFEG-VRTCSPDDCLRTIFDLIVKA--RVHRLVVVDENKRVEGIISLSDIL  118 (120)
T ss_pred             HhhcccCCCC-CeEEcCCCcHHHHHHHHHhc--CccEEEEECCCCCEEEEEEHHHhh
Confidence               1111244 78999999999999999875  558999999999999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.20  E-value=1.3e-05  Score=63.94  Aligned_cols=107  Identities=21%  Similarity=0.308  Sum_probs=81.4

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN  176 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG  176 (379)
                      ..+++++++-+|++.|. .+.+.++|+++..+-               .=++|+.|+.+.+.....     +..++.++ 
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------------~G~v~~~dl~~~~~~~~~-----~~~~v~~~-   63 (113)
T cd04607           5 LLVSPDASILDALRKIDKNALRIVLVVDENGRL---------------LGTVTDGDIRRALLKGLS-----LDDPVSEV-   63 (113)
T ss_pred             eEECCCCCHHHHHHHHHhcCcCEEEEECCCCCE---------------EEEEEcHHHHHHHhcCCC-----cCCCHHHh-
Confidence            45899999999999998 477777777643211               118999999987765422     12344433 


Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                       .++. +..|+.++++.+|++.|...  +...+|||+.+|+++|-||..++-+
T Consensus        64 -~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          64 -MNRN-PITAKVGSSREEILALMRER--SIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             -hcCC-CEEEcCCCCHHHHHHHHHHC--CCCEEEEECCCCCEEEEEEhHHhcc
Confidence             5666 88999999999999999875  4578999999999999999888743

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.19  E-value=4.8e-06  Score=66.21  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=80.0

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+.+..+|++.|.+..  ...+||+|. |+++|-|+..+|..+.....              ...  ++.+.   
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~--~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~--------------~~~--~~~~~---   60 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENS--IRRLPVVDR-GKLVGIVTDRDLKLASPSKA--------------TTL--DIWEL---   60 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCC--cceeeEecC-CeEEEEEeHHHHHHhhhccc--------------ccc--cchhh---
Confidence            678999999999999997753  368999998 99999999998876421100              000  00000   


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                ..   .+..      .                 .        ...--+...+++.+..+|..++..+..+
T Consensus        61 ----------~~---~~~~------~-----------------~--------~~~~~~~~~~~v~~~~~l~~~~~~~~~~   96 (122)
T cd04585          61 ----------YY---LLSK------I-----------------K--------VSDIMTRDPITVSPDASVEEAAELMLER   96 (122)
T ss_pred             ----------hh---hhcc------c-----------------C--------HHHhccCCCeEeCCCCcHHHHHHHHHHc
Confidence                      00   0000      0                 0        0000123478999999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++.|+|++|.++|+|+..
T Consensus        97 ~~~~~~Vv~~~~~~~Gvvt~~  117 (122)
T cd04585          97 KISGLPVVDDQGRLVGIITES  117 (122)
T ss_pred             CCCceeEECCCCcEEEEEEHH
Confidence            999999999999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=1.7e-05  Score=64.34  Aligned_cols=108  Identities=15%  Similarity=0.229  Sum_probs=82.5

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++-+|++.|. +|...++|++..-+-               .=++|+.|+.+++.+..    .....++.+ 
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~---------------~Givt~~dl~~~~~~~~----~~~~~~~~~-   62 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDL---------------VGVVSRKDLLKASIGGA----DLQKVPVGV-   62 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCE---------------EEEEEHHHHHHHHHcCC----CccCCCHHH-
Confidence            467899999999999997 788888887642211               11899999999886432    123444554 


Q ss_pred             cccc--CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC---CcEEeeeCccccC
Q 041297          176 NIID--DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE---GRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~--~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d---GkLIGeISa~~L~  228 (379)
                       +..  ++ +..+..+++..+|+++|.+.  +...+||||.+   |+++|=|+-.+|-
T Consensus        63 -~~~~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~lpVvd~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          63 -IMTRMPN-ITTTTPEESVLEAAKKLIEH--QVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             -HhCCCCC-cEEECCCCcHHHHHHHHHHc--CCCEeeEEeCCCccceEEEEEEhhhee
Confidence             333  35 88999999999999999885  44889999987   7999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.16  E-value=6.8e-06  Score=65.36  Aligned_cols=110  Identities=16%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc-cCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL-LNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~-l~p~p~~SI~s  174 (379)
                      +.++++++++-++++.|. ++.+.++|++...+-               .=++|+.|+++++.+.... +..+...++.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~---------------~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~   67 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKY---------------VGTISLTDILWKLKGLENLDLERLVDLKVID   67 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHCCCceeeeECCCCcE---------------EEEEeHHHHHHHhhccCchhHHHHhCCcHHH
Confidence            567999999999999998 688888887642111               1299999999988653210 00011344554


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +  .+++ +..+..+++..+|+++|.+.    ..+||++.+|+++|-|+..+|-
T Consensus        68 ~--~~~~-~~~v~~~~~l~~a~~~~~~~----~~~~Vv~~~~~~~Gvit~~dil  114 (116)
T cd04643          68 V--MNTD-VPVIIDDADIEEILHLLIDQ----PFLPVVDDDGIFIGIITRREIL  114 (116)
T ss_pred             H--hcCC-CceecCCCCHHHHHHHHhcC----CceeEEeCCCeEEEEEEHHHhh
Confidence            3  4556 88899999999999999652    3599999999999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=2.3e-05  Score=60.10  Aligned_cols=108  Identities=22%  Similarity=0.300  Sum_probs=80.7

Q ss_pred             eEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+++++++.++++.|.+ +.++++|++...               .-.-++++.|+++++..........    +.  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~G~v~~~~l~~~~~~~~~~~~~~----~~--   61 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDDG---------------RLVGIVTERDLLRALAEGGLDPLVT----VG--   61 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCCceEEEECCCC---------------CEEEEEeHHHHHHHHHhccCCcccc----HH--
Confidence            4568999999999999985 677777766431               1122899999999997643321111    11  


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      .+...+ ...+..+++..+++..|.+.  +...++|++.+|+++|-|+..+|.
T Consensus        62 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~i~~~dl~  111 (113)
T cd02205          62 DVMTRD-VVTVSPDTSLEEAAELMLEH--GIRRLPVVDDEGRLVGIVTRSDIL  111 (113)
T ss_pred             HHhcCC-ceecCCCcCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEEHHHhh
Confidence            123456 88899999999999999875  447899999999999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.12  E-value=1.8e-05  Score=62.58  Aligned_cols=105  Identities=14%  Similarity=0.132  Sum_probs=80.0

Q ss_pred             eEEeCCCCchhHHHHHHhc-CccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLLG-GVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~~-G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      +..+.+++++-+|++.|.+ +...++|+++. .+               -+=++|+.|+++++.+...   +   .++..
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~---------------~~G~v~~~~l~~~~~~~~~---~---~~~~~   61 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDN---------------IIGVVHVKDLLRALAEGEE---D---LDLRD   61 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCce---------------EEEEEEHHHHHHHHHcCCC---c---CCHHH
Confidence            5679999999999999984 67777776543 11               1229999999998864321   1   23443


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +   ..+ +..+..+++..+|++.|.+.  +...+||++.+|+++|-|+-.++.
T Consensus        62 ~---~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~di~  109 (111)
T cd04590          62 L---LRP-PLFVPESTPLDDLLEEMRKE--RSHMAIVVDEYGGTAGLVTLEDIL  109 (111)
T ss_pred             H---hcC-CeecCCCCcHHHHHHHHHhc--CCcEEEEEECCCCEEEEeEHHHhh
Confidence            2   345 78899999999999999886  458899999999999999988764

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=1.8e-05  Score=63.69  Aligned_cols=112  Identities=25%  Similarity=0.347  Sum_probs=83.1

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccC-----CCCCC
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLN-----PTPNQ  170 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~-----p~p~~  170 (379)
                      +..+.|++++.|+++.|. +|+++++|+++..+               -+=++|..|+.+++........     .....
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~---------------~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~   67 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRIRHLPVVNEDGK---------------LVGLLTQRDLLRAALSSLSDNGEESLTKERDV   67 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCcccccEECCCCC---------------EEEEEEHHHHHHHhccccccccccccccccCc
Confidence            456899999999999998 68888888765311               1228999999998865332111     11233


Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ++.+  +.+.+ +..++.+++..++++.|++.  +...+||++.+|+++|=|+..+|-
T Consensus        68 ~v~~--~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~dl~  120 (122)
T cd04803          68 PVAE--VMKTD-VLTVTPDTPLREAAEIMVEN--KIGCLPVVDDKGTLVGIITRSDFL  120 (122)
T ss_pred             CHHH--hhCCC-CeEeCCCCcHHHHHHHHHHc--CCCeEEEEcCCCCEEEEEEHHHhh
Confidence            4443  35667 89999999999999999875  336799999999999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=2.4e-05  Score=62.08  Aligned_cols=107  Identities=16%  Similarity=0.270  Sum_probs=80.3

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN  176 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG  176 (379)
                      ..+.|++++-||++.|. .+..+++|+++.-+-               .=++|+.|+.+.+... +.   +...++.++ 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~---------------~G~v~~~dl~~~~~~~-~~---~~~~~i~~~-   63 (113)
T cd04615           4 SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRL---------------VGIITRYDVLSYALES-EE---LKDAKVREV-   63 (113)
T ss_pred             EEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCE---------------EEEEEHHHHHHhhhhh-hh---hcCCcHHHh-
Confidence            56799999999999998 577777777642111               1199999999976552 11   223445543 


Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                       ..++ +..++.+++..++++.|.+.  +...+|||+.+|+++|-++..+|-
T Consensus        64 -~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vvd~~g~~~Gvvt~~dl~  111 (113)
T cd04615          64 -MNSP-VITIDANDSIAKARWLMSNN--NISRLPVLDDKGKVGGIVTEDDIL  111 (113)
T ss_pred             -ccCC-ceEECCCCcHHHHHHHHHHc--CCCeeeEECCCCeEEEEEEHHHhh
Confidence             4566 89999999999999999764  447899999999999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.07  E-value=2.2e-05  Score=64.31  Aligned_cols=119  Identities=21%  Similarity=0.291  Sum_probs=80.9

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.++++.+|+..|.+.  +..+++|+|.+|+++|-++..||..-... -.......-.+++   .           
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~--~~~~i~V~d~~~~~~Giv~~~dl~~~~~~-~~~~~~~~~~~~~---~-----------   65 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKN--NISGLPVVDEKGKLIGNISASDLKGLLLS-PDDLLLYRTITFK---E-----------   65 (126)
T ss_pred             eEEECCCccHHHHHHHHHHh--CCCcccEECCCCcEEEEEEHHHhhhhhcC-cchhhcccchhhh---h-----------
Confidence            78899999999999999764  45899999999999999998887551100 0000000000000   0           


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                     ..                  ++.            .+........+++|.+..+|.+++..+..+
T Consensus        66 ---------------~~------------------~~~------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~  100 (126)
T cd04642          66 ---------------LS------------------EKF------------TDSDGVKSRPLITCTPSSTLKEVITKLVAN  100 (126)
T ss_pred             ---------------hh------------------hhc------------ccccccccCCCeEECCCCcHHHHHHHHHHh
Confidence                           00                  000            000001234478999999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.++++|+|++|.++|+|+..
T Consensus       101 ~~~~l~Vvd~~~~~~Giit~~  121 (126)
T cd04642         101 KVHRVWVVDEEGKPIGVITLT  121 (126)
T ss_pred             CCcEEEEECCCCCEEEEEEHH
Confidence            999999999999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=4e-05  Score=61.17  Aligned_cols=105  Identities=17%  Similarity=0.341  Sum_probs=77.0

Q ss_pred             EEeCCCCchhHHHHHHh-cCcc-EEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQ-NLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~-rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      ..+.++.++-||++.|. +|.+ .++|.+.+ ...                 ++|..|+++++.+..    +....++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G-----------------~v~~~dl~~~~~~~~----~~~~~~i~~   62 (115)
T cd04620           4 LTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLG-----------------IFTERDIVRLTAIGK----DLSDLPIGE   62 (115)
T ss_pred             eEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEE-----------------EEeHHHHHHHHhcCC----CccccCHHH
Confidence            35789999999999997 5634 44445531 122                 899999999876422    122355665


Q ss_pred             cccccCCcEEEEecC--CchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYD--DPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~--~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +  ..++ +..+..+  +++.+|++.|.+.  +...+|||+.+|+++|-|+..++-
T Consensus        63 ~--~~~~-~~~v~~~~~~~l~~a~~~~~~~--~~~~~pVvd~~~~~~Gvit~~dl~  113 (115)
T cd04620          63 V--MTQP-VVTLQESEIQDIFTALSLFRQH--QIRHLPVLDDQGQLIGLVTAESIR  113 (115)
T ss_pred             h--cCCC-cEEEecccccCHHHHHHHHHHh--CCceEEEEcCCCCEEEEEEhHHhh
Confidence            3  4566 7888877  6888999999885  447899999999999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.05  E-value=3.5e-05  Score=60.88  Aligned_cols=104  Identities=18%  Similarity=0.306  Sum_probs=79.8

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|+.++-++++.|. +|.++++|+++..+-               .=++|+.|+++.+....        ..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~~l~~~~~~~~--------~~~~~~   60 (110)
T cd04605           4 VVTISEDASIKEAAKLMIEENINHLPVVDEDGRL---------------VGIVTSWDISKAVARDK--------KSVEDI   60 (110)
T ss_pred             CEEECCCCCHHHHHHHHHhCCCceEEEECCCCcE---------------EEEEeHHHHHHHHhhCc--------cCHHHh
Confidence            467899999999999998 588898887542111               11899999998775432        123332


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        ..++ +..+..+++..+|++.|.+.  +...+|||+.+|+++|-++..+|.
T Consensus        61 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~G~v~~~di~  108 (110)
T cd04605          61 --MTRN-VITATPDEPIDVAARKMERH--NISALPVVDAENRVIGIITSEDIS  108 (110)
T ss_pred             --cCCC-CeEECCCCcHHHHHHHHHHh--CCCEEeEECCCCcEEEEEEHHHhh
Confidence              3456 88999999999999999874  347899999999999999988764

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=2.2e-05  Score=64.86  Aligned_cols=111  Identities=21%  Similarity=0.331  Sum_probs=80.5

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCC--------
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPT--------  167 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~--------  167 (379)
                      +..+.|++++.||++.|. +++++++|+++.-+               -+=++|+.|+++++..........        
T Consensus         3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~---------------~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~   67 (132)
T cd04636           3 VITVKKDDTLRDVVEILLTGKISGVPVVDNEGR---------------VVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFL   67 (132)
T ss_pred             CeEeCCCCcHHHHHHHHHHhCCCccceECCCCC---------------EEEEEeHHHHHHHHhccCCccccccccccccc
Confidence            356899999999999997 67788888764211               112899999999987643322111        


Q ss_pred             --------CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          168 --------PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       168 --------p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                              ...++.++  .+++ +..|..+++..++++.|.+.  ....+||++. |+++|-|+..++-
T Consensus        68 ~~~~~~~~~~~~v~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~V~~~-~~~iGvit~~dl~  130 (132)
T cd04636          68 DESKIKKLLGKKVEEI--MTKK-VITVDEDTTIEDVARIMSKK--NIKRLPVVDD-GKLVGIISRGDII  130 (132)
T ss_pred             chHHHHHHcCCCHHHh--ccCC-ceEECCCCcHHHHHHHHHHC--CCCeeEEEEC-CEEEEEEEHHHhh
Confidence                    01133333  3566 89999999999999999765  3368999998 9999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.05  E-value=2.8e-05  Score=62.71  Aligned_cols=112  Identities=27%  Similarity=0.335  Sum_probs=81.6

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc-cC-----CCCC
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL-LN-----PTPN  169 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~-l~-----p~p~  169 (379)
                      +..++|++++-|+++.|. ++..+++|+++..+               -.=++|+.|+++++...... +.     ....
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~---------------~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~   68 (124)
T cd04600           4 VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRR---------------LVGIVTQRDLLRHARPDGRRPLRGRLRGRDKP   68 (124)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCCceeeEECCCCC---------------EEEEEEHHHHHhhhcccccchhhhhhhccccc
Confidence            467899999999999998 57788888754211               12289999999877532210 00     0112


Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      .++.++  .+++ +..+..+++..+|++.|.+.  +...+||||.+|+++|-|+..|+-
T Consensus        69 ~~i~~~--~~~~-~~~~~~~~~l~~~~~~~~~~--~~~~~~Vv~~~g~~~Gvit~~di~  122 (124)
T cd04600          69 ETVGDI--MSPP-VVTVRPDTPIAELVPLLADG--GHHHVPVVDEDRRLVGIVTQTDLI  122 (124)
T ss_pred             ccHHHh--ccCC-CeeeCCCCcHHHHHHHHHhc--CCCceeEEcCCCCEEEEEEhHHhh
Confidence            234433  3566 89999999999999999875  457899999999999999988873

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.04  E-value=2.6e-05  Score=61.10  Aligned_cols=107  Identities=20%  Similarity=0.312  Sum_probs=80.2

Q ss_pred             CceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297           95 GIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN  173 (379)
Q Consensus        95 gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~  173 (379)
                      |.+..+++++++-||++.|. ++.++++|+++ .+-               .=++|+.|+.|++.+.-..+    ..++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~---------------~G~v~~~dl~~~~~~~~~~~----~~~~~   60 (110)
T cd04609           1 GDVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRV---------------VGSIDESDLLDALIEGKAKF----SLPVR   60 (110)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCceeeEeeC-Cee---------------EEEEeHHHHHHHHhcccccc----CcCHH
Confidence            34567899999999999999 58888888765 111               11899999999886542211    23344


Q ss_pred             ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ++  .+++ +..++.+++..+++++|++  .  ..++||+.+|+++|-|+..++-
T Consensus        61 ~~--~~~~-~~~v~~~~~l~~~~~~~~~--~--~~~~vv~~~~~~~Gvvt~~di~  108 (110)
T cd04609          61 EV--MGEP-LPTVDPDAPIEELSELLDR--G--NVAVVVDEGGKFVGIITRADLL  108 (110)
T ss_pred             HH--hcCC-CceeCCCCcHHHHHHHHHh--C--CceeEEecCCeEEEEEeHHHhh
Confidence            32  4566 8899999999999999987  2  3478999999999999988763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.04  E-value=1.3e-05  Score=66.47  Aligned_cols=111  Identities=23%  Similarity=0.301  Sum_probs=80.8

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-------------
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-------------  162 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-------------  162 (379)
                      +..++|++++-|+++.|. .+.++++|+++.-+-               .=++|+.|+++++.....             
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~---------------~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~   68 (135)
T cd04586           4 VVTVSPETSVAEAARLMLDNHISGLPVVDDDGRL---------------VGIVSEGDLLRRAELGTERRRARWLDLLAGA   68 (135)
T ss_pred             CEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCE---------------EEEeeHHHHHHHhcccCcchhhhHHHHhcch
Confidence            567899999999999998 578888887653211               118999999887643210             


Q ss_pred             -----ccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          163 -----LLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       163 -----~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                           .+......++.++  .+++ +..|..+++..+|++.|.+.  +...+||+| +|+++|-|+..++-
T Consensus        69 ~~~~~~~~~~~~~~v~~~--~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~l~Vvd-~g~~~Gvit~~di~  133 (135)
T cd04586          69 EELAAAFVRSHGRKVADV--MTRP-VVTVGEDTPLAEVAELMEEH--RIKRVPVVR-GGRLVGIVSRADLL  133 (135)
T ss_pred             HHHHHHHHHhcCCCHHHH--hCCC-ceEeCCCCcHHHHHHHHHHc--CCCccCEec-CCEEEEEEEhHhhh
Confidence                 0001123344443  3566 89999999999999999885  447899999 99999999988763

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.02  E-value=3.8e-05  Score=60.94  Aligned_cols=106  Identities=15%  Similarity=0.210  Sum_probs=81.5

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.++.++-++++.|. +|.++++|+++..+-               .=++|+.|+.++......     ...++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------------~G~v~~~dl~~~~~~~~~-----~~~~v~~~   62 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKL---------------KGVVTFTDILDLDLFESF-----LEKKVFNI   62 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCE---------------EEEEehHHhHHHHhhccc-----ccCcHHHH
Confidence            467899999999999998 688888886542111               119999999988764321     23456654


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..+..+++..+|++.|.+.  +...+||++. |+++|-|+..++-
T Consensus        63 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~G~it~~di~  109 (111)
T cd04626          63 --VSQD-VFYVNEEDTIDEALDIMREK--QIGRLPVVDD-NKLIGVVRTKDIL  109 (111)
T ss_pred             --hcCC-cEEEcCCCcHHHHHHHHHHc--CCCeeeEeEC-CEEEEEEEhHHhc
Confidence              5677 88999999999999999875  3367999988 9999999988874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.02  E-value=2.3e-05  Score=63.24  Aligned_cols=112  Identities=23%  Similarity=0.416  Sum_probs=82.0

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccC--------CC
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLN--------PT  167 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~--------p~  167 (379)
                      +..+.|+.++-||++.|. .+.+.++|++..-++              -+=++|+.|+.+++.+... +.        ..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~--------------~~G~v~~~dl~~~~~~~~~-~~~~~~~~~~~~   67 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGK--------------LVGIITATDILKYLGGGEK-FNKIKTGNGLEA   67 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCE--------------EEEEEEHHHHHHHhhccch-hccccccccchh
Confidence            457899999999999998 577777777643111              1228999999998865321 11        11


Q ss_pred             CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +..++.++  .+++ +..+..+++..++++.|++.  ....++|++.+|+++|-|+..++-
T Consensus        68 ~~~~~~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~V~~~~~~~~Gvit~~di~  123 (125)
T cd04631          68 INEPVRSI--MTRN-VITITPDDSIKDAAELMLEK--RVGGLPVVDDDGKLVGIVTERDLL  123 (125)
T ss_pred             hhcCHHHH--hcCC-ceEeCCCCcHHHHHHHHHHc--CCceEEEEcCCCcEEEEEEHHHhh
Confidence            23345544  3566 99999999999999999875  346799999999999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.01  E-value=5.5e-05  Score=59.52  Aligned_cols=106  Identities=20%  Similarity=0.300  Sum_probs=81.4

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|+.++-++++.|. ++.+.++|++.  ++              -+=++|..|+.+++.....     ...++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--------------~~G~v~~~~l~~~~~~~~~-----~~~~v~~~   61 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVVDD--GR--------------PLGIVTERDILRLLASGPD-----LQTPVGEV   61 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CE--------------EEEEEeHHHHHHHHhcCCC-----CCcCHHHh
Confidence            457899999999999998 47778777654  21              1128999999999865331     34455554


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..++.+++..++++.|.+.  +...++|++.+|+++|-|+..+|-
T Consensus        62 --~~~~-~~~~~~~~~l~~~l~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~di~  109 (111)
T cd04611          62 --MSSP-LLTVPADTSLYDARQLMREH--GIRHLVVVDDDGELLGLLSQTDLL  109 (111)
T ss_pred             --cCCC-ceEECCCCCHHHHHHHHHHc--CCeEEEEECCCCcEEEEEEhHHhh
Confidence              3566 88999999999999999764  446799999999999999988874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.01  E-value=4.9e-05  Score=60.16  Aligned_cols=108  Identities=21%  Similarity=0.315  Sum_probs=80.8

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|++++-++++.|. +|.++++|++. .+-               .=++|..|+++++...  .+.+. ..++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~---------------~G~v~~~dl~~~~~~~--~~~~~-~~~v~~i   63 (113)
T cd04587           3 PATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKL---------------VGIFTSKDIALRVVAQ--GLDPE-STLVERV   63 (113)
T ss_pred             CeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEE---------------EEEEEhHHHHHHHHhc--CCCcC-cCCHHHh
Confidence            456899999999999997 58888888764 211               1189999999877652  11221 2456654


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .++. +..+..+++..+|++.|...  +...++||+.+|+++|-||..+|-
T Consensus        64 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vv~~~~~~~Gvvs~~dl~  111 (113)
T cd04587          64 --MTPN-PVCATSDTPVLEALHLMVQG--KFRHLPVVDKSGQVVGLLDVTKLT  111 (113)
T ss_pred             --cCCC-CeEEcCCCCHHHHHHHHHHc--CCCcccEECCCCCEEEEEEHHHhc
Confidence              3566 78899999999999999764  336799999999999999988874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.01  E-value=5.4e-05  Score=59.53  Aligned_cols=107  Identities=21%  Similarity=0.357  Sum_probs=80.1

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++.++++.|. .+.++++|+++.-+               -+=++|..|+++++...-.   +....++.++
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~---------------~~Giv~~~~l~~~~~~~~~---~~~~~~~~~~   64 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDGGR---------------LVGIFSERDIVRKVALRGA---SALDTPVSEI   64 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEECCCCC---------------EEEEEehHHHHHHHhhcCC---CccccCHHHh
Confidence            356899999999999998 57889888754211               1128999999998764321   1123455553


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                        .+++ +..+..+++..++++.|.+.  +...+||++. |+++|-|+..+|
T Consensus        65 --~~~~-~~~v~~~~~~~~~l~~~~~~--~~~~~~Vv~~-~~~~Gvit~~di  110 (113)
T cd04623          65 --MTRN-VITVTPDDTVDEAMALMTER--RFRHLPVVDG-GKLVGIVSIGDV  110 (113)
T ss_pred             --cCCC-cEEECCCCcHHHHHHHHHHc--CCCEeEEEeC-CEEEEEEEHHHh
Confidence              3456 88999999999999999875  3367899987 999999998876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.99  E-value=2.8e-05  Score=62.53  Aligned_cols=104  Identities=15%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      ...++.+++..+|++.|.+.  ....++|+|.+|+++|-|+..+|......                 +..         
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~--~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-----------------~~~---------   54 (111)
T cd04603           3 TVSVNCENPLREAIKMINEL--GARAVVVVDEENKVLGQVTLSDLLEIGPN-----------------DYE---------   54 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHc--CCCEEEEEcCCCCEEEEEEHHHHHhhccc-----------------ccc---------
Confidence            67889999999999999764  44789999999999999998887641100                 000         


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             . .+      . ++.                  -.....++.+..++.+++..|..|
T Consensus        55 -----------------------~-~~------v-~~~------------------~~~~~~~v~~~~~l~~al~~m~~~   85 (111)
T cd04603          55 -----------------------T-LK------V-CEV------------------YIVPVPIVYCDSKVTDLLRIFRET   85 (111)
T ss_pred             -----------------------c-cC------h-hhe------------------eecCCcEECCCCcHHHHHHHHHHc
Confidence                                   0 00      0 000                  113357899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|.+|.+.|+|+.+
T Consensus        86 ~~~~lpVvd~~~~~~Giit~~  106 (111)
T cd04603          86 EPPVVAVVDKEGKLVGTIYER  106 (111)
T ss_pred             CCCeEEEEcCCCeEEEEEEhH
Confidence            999999999999999999854

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.98  E-value=6.2e-05  Score=60.24  Aligned_cols=106  Identities=19%  Similarity=0.270  Sum_probs=79.9

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN  176 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG  176 (379)
                      ..++|++++-++++.|. .++++++|+++.-+-               .=++|..|+.+.+.+..    ..+..++.++ 
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~dl~~~~~~~~----~~~~~~~~~~-   63 (115)
T cd04593           4 PVLSATTPLREAAEQLIESKHGSALVVDRDGGV---------------VGIITLPDLLRALEADE----AGEPSAVDEV-   63 (115)
T ss_pred             cEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCE---------------EEEEEHHHHHHHHhccc----ccccccHHHh-
Confidence            46889999999999998 578888887642111               11899999999876521    1122234443 


Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC--CcEEeeeCcccc
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE--GRLVGDISPFSL  227 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d--GkLIGeISa~~L  227 (379)
                       ...+ +..+..+++..+|+++|.+.  +...+||||.+  |+++|=|+..++
T Consensus        64 -~~~~-~~~v~~~~~l~~~l~~~~~~--~~~~~~Vvd~~~~~~~~Gvit~~di  112 (115)
T cd04593          64 -ATPP-LLTVHPDEPLAHALDRMASR--GLRQLPVVDRGNPGQVLGLLTRENV  112 (115)
T ss_pred             -ccCC-ceEECCCCCHHHHHHHHHHc--CCceeeEEeCCCCCeEEEEEEhHHh
Confidence             4556 88999999999999999875  44789999987  899999998876

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.98  E-value=4.8e-05  Score=60.10  Aligned_cols=108  Identities=24%  Similarity=0.280  Sum_probs=81.4

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|++++-++++.|. .+.++++|+++..+-               .=++|+.|+.+++.+...    ....++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------------~G~v~~~~i~~~~~~~~~----~~~~~v~~~   64 (114)
T cd04604           4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRL---------------VGIFTDGDLRRALEKGLD----ILTLPVADV   64 (114)
T ss_pred             ccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCE---------------EEEechHHHHHHHhccCc----cccCCHHHh
Confidence            456899999999999998 467788887653221               118999999998875432    112344443


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..+..+++..++++.|.+.  +...+|||+.+|+++|-|+..+|-
T Consensus        65 --~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~iG~it~~di~  112 (114)
T cd04604          65 --MTRN-PKTIDPDALAAEALELMEEN--KITALPVVDDNGRPVGVLHIHDLL  112 (114)
T ss_pred             --hccC-CeEECCCCcHHHHHHHHHHc--CCCEEEEECCCCCEEEEEEHHHhh
Confidence              4566 78899999999999999774  447899999999999999988763

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.98  E-value=7.2e-05  Score=59.27  Aligned_cols=104  Identities=26%  Similarity=0.374  Sum_probs=81.0

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      ..++|+.++-++++.|. .+.++++|+++.  +..                 ++|+.|+++++.+...     +..++.+
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G-----------------~v~~~~l~~~~~~~~~-----~~~~v~~   61 (112)
T cd04624           4 VTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIG-----------------IVTERDIVRAVAAGID-----LDTPVSE   61 (112)
T ss_pred             eEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEE-----------------EeeHHHHHHHHhccCC-----CccCHHH
Confidence            46899999999999998 588888887643  122                 8999999998876321     2345554


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        +.+++ +..+..+++..++++.|.+.  ....++||+.+|+++|-++..+|-
T Consensus        62 --~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~Vv~~~g~~~Gilt~~dl~  110 (112)
T cd04624          62 --IMTRD-LVTVDPDEPVAEAAKLMRKN--NIRHHLVVDKGGELVGVISIRDLV  110 (112)
T ss_pred             --hccCC-CEEECCCCcHHHHHHHHHHc--CccEEEEEcCCCcEEEEEEHHHhc
Confidence              34667 89999999999999999764  336899999999999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.96  E-value=5.1e-05  Score=59.67  Aligned_cols=108  Identities=17%  Similarity=0.135  Sum_probs=80.1

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++-++++.|. .+..+++|+++  .+              -+=++|..|+.+...+..  ...   .++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--------------~~G~v~~~dl~~~~~~~~--~~~---~~~~~~   61 (111)
T cd04612           3 VVTVPVDLTVDEVLALMFGERHRGYPVVDD--GR--------------LVGIVTLADIRRVPAEGR--EAT---VLVGDV   61 (111)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcceEeeC--Ce--------------EEEEEEHHHHHHHHhcCc--ccc---cCHHHh
Confidence            356899999999999998 56777777665  22              122899999998765321  111   223322


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC  230 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C  230 (379)
                        ..++ +..+..+++..++++.|.+.  +...++|++.+|+++|-|+..++-.|
T Consensus        62 --~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~it~~di~~~  111 (111)
T cd04612          62 --MTRD-PVTASPDETLRDALKRMAER--DIGRLPVVDDSGRLVGIVSRSDLLRA  111 (111)
T ss_pred             --ccCC-CeEECCCCCHHHHHHHHHhC--CCCeeeEEcCCCCEEEEEEHHHhhhC
Confidence              3456 89999999999999999875  44789999999999999999887654

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.95  E-value=7.1e-05  Score=58.73  Aligned_cols=100  Identities=19%  Similarity=0.298  Sum_probs=75.1

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN  176 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG  176 (379)
                      ..++|+.++-||++.|. ++.+.++|+++.-+-               .=++|..|+.+...           .++.++ 
T Consensus         4 ~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~---------------~Giv~~~dl~~~~~-----------~~~~~~-   56 (106)
T cd04582           4 ITVRPDDPLSDALGLMDDSDLRALTVVDADGQP---------------LGFVTRREAARASG-----------GCCGDH-   56 (106)
T ss_pred             cEecCCCcHHHHHHHHHhcCCCEEEEECCCCCE---------------EEEEeHHHHHHhcc-----------cchhhh-
Confidence            46889999999999987 567777777532111               12899999987421           124433 


Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                       .++. +..+..+++..+|++.|.+.  +...+|||+.+|+++|-|+..+|-
T Consensus        57 -~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~~l~  104 (106)
T cd04582          57 -AEPF-KVTVSVDDDLRIVLSRMFAH--DMSWLPCVDEDGRYVGEVTQRSIA  104 (106)
T ss_pred             -cccC-CEEECCCCCHHHHHHHHHHC--CCCeeeEECCCCcEEEEEEHHHhh
Confidence             3555 77799999999999999885  447799999999999999988763

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.94  E-value=3.4e-05  Score=61.15  Aligned_cols=109  Identities=22%  Similarity=0.307  Sum_probs=80.1

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|+.++-||++.|. ++...++|+++..+-               .=++|+.|+++.+.+...  ...+..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~---------------~G~v~~~~l~~~~~~~~~--~~~~~~~v~~~   65 (114)
T cd04629           3 PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNL---------------VGFLSEQDCLKQLLESSY--HCDGVATVRDI   65 (114)
T ss_pred             CeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeE---------------EEEeehHHHHHHhhhhhh--ccCCCccHHHH
Confidence            456899999999999987 577777777542211               128999999998865321  11223344443


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..+..+++..+|++.|.+.  +...+||++. |+++|-|+..+|-
T Consensus        66 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~Gvit~~di~  112 (114)
T cd04629          66 --MTTE-VLTVSPDDSIVDLAQLMLKA--KPKRYPVVDD-GKLVGQISRRDVL  112 (114)
T ss_pred             --hccC-ceEECCCCcHHHHHHHHHHh--CCCccCEEEC-CEEEEEEEHHHHh
Confidence              4566 88999999999999999875  3467999997 9999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.94  E-value=6.5e-05  Score=58.98  Aligned_cols=101  Identities=16%  Similarity=0.182  Sum_probs=76.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..++++.|.+.  ....++|+|.+|+++|-++..+|.....      -+.++.++                
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~~------~~~~v~~~----------------   59 (110)
T cd04601           4 PITVSPDATVAEALELMAEY--GISGLPVVDDDGKLVGIVTNRDLRFETD------LDKPVSEV----------------   59 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHc--CCceEEEEcCCCEEEEEEEhhHeeeccc------CCCCHHHh----------------
Confidence            67889999999999999765  3479999999999999999888753100      00000000                


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecC-CCcHHHHHHHHHH
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYP-WSSLMAVIMQALA  341 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p-~SSLvAVMaQAla  341 (379)
                                                                              -...+.++.+ ..+|.++|..+..
T Consensus        60 --------------------------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~   83 (110)
T cd04601          60 --------------------------------------------------------MTPENLLTTVEGTSLEEALELLHE   83 (110)
T ss_pred             --------------------------------------------------------cccCceEEecCCCCHHHHHHHHHH
Confidence                                                                    0122455666 9999999999999


Q ss_pred             cCCcEEEEeeCCCCcccceEee
Q 041297          342 RRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       342 HRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ++.+++.|+|++|.++|+|+..
T Consensus        84 ~~~~~~~Vv~~~~~~~Gvi~~~  105 (110)
T cd04601          84 HKIEKLPVVDDEGKLKGLITVK  105 (110)
T ss_pred             hCCCeeeEEcCCCCEEEEEEhh
Confidence            9999999999999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.93  E-value=5.6e-05  Score=61.78  Aligned_cols=109  Identities=14%  Similarity=0.274  Sum_probs=80.3

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc---------ccC
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG---------LLN  165 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig---------~l~  165 (379)
                      ..+.|++++-||++.|. .+++.++|+++.  +..                 ++|+.|+.+++.....         ...
T Consensus         4 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G-----------------~it~~dl~~~~~~~~~~~~~~~~~~~~~   66 (128)
T cd04632           4 ITVREDDSVGKAINVLREHGISRLPVVDDNGKLTG-----------------IVTRHDIVDFVVRDRDKARTGDRSGEKE   66 (128)
T ss_pred             eEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEE-----------------EEEHHHHHHHHhhhhhhcchhhhhhhhh
Confidence            46889999999999998 588888887653  222                 8999999998754210         011


Q ss_pred             CCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEc--CCCcEEeeeCccccC
Q 041297          166 PTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVD--EEGRLVGDISPFSLN  228 (379)
Q Consensus       166 p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd--~dGkLIGeISa~~L~  228 (379)
                      ..+..++.+  +.+++ +..+..+++..++++.|.+.-  ...++|++  .+|+++|-|+..+|-
T Consensus        67 ~~~~~~~~~--~~~~~-~~~v~~~~~l~~~l~~~~~~~--~~~~~V~~~~~~~~~~Gvit~~di~  126 (128)
T cd04632          67 RMLDLPVYD--AMSSP-VITASPNDSVRDAVDRMLEND--DSSVVVVTPDDDTKVVGILTKKDVL  126 (128)
T ss_pred             hhccCcHHH--HhcCC-CceECCCCcHHHHHHHHHhCC--CCeEeEeccCCCCcEEEEEEhHhhh
Confidence            122344554  35677 999999999999999998753  36788885  468999999998874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.92  E-value=9.7e-05  Score=58.59  Aligned_cols=107  Identities=20%  Similarity=0.208  Sum_probs=80.0

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN  176 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG  176 (379)
                      ..+.++.++-||++.|. +|.+.++|+++ -+-               .=++|.+|+.+++.....    .+..++.++ 
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~---------------~G~v~~~~l~~~~~~~~~----~~~~~i~~~-   62 (111)
T cd04589           4 LIVDASTSIRDAARLMREHGADALLVRDG-DPR---------------LGIVTRTDLLDAVLLDGL----PSSTPVGEI-   62 (111)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEecC-CeE---------------EEEEEHHHHHHHHHcCCC----CCCCCHHHH-
Confidence            46789999999999998 57777777665 111               118999999998754211    124456654 


Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC  230 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C  230 (379)
                       .+++ +..|..+++..+++++|.+.  ....+||++. |+++|-|+..++-.|
T Consensus        63 -~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~G~it~~dl~~~  111 (111)
T cd04589          63 -ATFP-LITVDPDDFLFNALLLMTRH--RIHRVVVREG-GEVVGVLEQTDLLSF  111 (111)
T ss_pred             -hCCC-cEEECCCCcHHHHHHHHHHh--CccEEEEeeC-CEEEEEEEhHHhhcC
Confidence             4566 89999999999999999885  3367999985 899999999887654

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.91  E-value=7.1e-05  Score=59.47  Aligned_cols=111  Identities=23%  Similarity=0.280  Sum_probs=79.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC------CCC
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP------TPN  169 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p------~p~  169 (379)
                      +..++++.++-++++.|. .+.+.+.|+++  .+              -.=++++.|+.+++..-.....+      .-.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--------------~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~   66 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENSIRRLPVVDR--GK--------------LVGIVTDRDLKLASPSKATTLDIWELYYLLSK   66 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCCcceeeEecC--Ce--------------EEEEEeHHHHHHhhhcccccccchhhhhhhcc
Confidence            356899999999999998 57788888765  22              00178899998876432111111      011


Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      .++.+  +.+++ +..++.+++..+++..|.+.  +...+||++.+|+++|-||..+|.
T Consensus        67 ~~~~~--~~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvvt~~di~  120 (122)
T cd04585          67 IKVSD--IMTRD-PITVSPDASVEEAAELMLER--KISGLPVVDDQGRLVGIITESDLF  120 (122)
T ss_pred             cCHHH--hccCC-CeEeCCCCcHHHHHHHHHHc--CCCceeEECCCCcEEEEEEHHHhh
Confidence            22332  23556 89999999999999999875  457899999999999999988774

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.91  E-value=4.6e-05  Score=60.50  Aligned_cols=102  Identities=15%  Similarity=0.177  Sum_probs=78.0

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++-+|++.|. .|.+.++|+++.-+-               .=|+|+.|+.++.          +..++.++
T Consensus         4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~~l~~~~----------~~~~v~~~   58 (108)
T cd04596           4 TGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKV---------------VGIVTSKDVAGKD----------PDTTIEKV   58 (108)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeE---------------EEEecHHHHhccc----------ccccHHHH
Confidence            467899999999999998 466777777542111               1199999997531          24456654


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+.+ +..+..+++..+|++.|.+.  +...+|||+.+|+++|-|+..++.
T Consensus        59 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~G~it~~di~  106 (108)
T cd04596          59 --MTKN-PITVNPKTSVASVAHMMIWE--GIEMLPVVDDNKKLLGIISRQDVL  106 (108)
T ss_pred             --hcCC-CeEECCCCCHHHHHHHHHHc--CCCeeeEEcCCCCEEEEEEHHHhh
Confidence              4566 88999999999999999875  448899999999999999987763

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=8e-05  Score=59.29  Aligned_cols=89  Identities=12%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..|+.+++..+|++.|.+.  ....++|+|++|+++|-++..+|....                               
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~--~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------   49 (96)
T cd04614           3 VPTVWEETPLPVAVRIMELA--NVKALPVLDDDGKLSGIITERDLIAKS-------------------------------   49 (96)
T ss_pred             ccEeCCCCcHHHHHHHHHHc--CCCeEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence            78899999999999999764  457899999999999999877765400                               


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                                                                 ...+|.+..+|.++|..+..|
T Consensus        50 -----------------------------------------------------------~~~~v~~~~~l~~a~~~m~~~   70 (96)
T cd04614          50 -----------------------------------------------------------EVVTATKRTTVSECAQKMKRN   70 (96)
T ss_pred             -----------------------------------------------------------CcEEecCCCCHHHHHHHHHHh
Confidence                                                                       046888999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+|+.+
T Consensus        71 ~~~~lpVv~~~~~~~Giit~~   91 (96)
T cd04614          71 RIEQIPIINGNDKLIGLLRDH   91 (96)
T ss_pred             CCCeeeEECCCCcEEEEEEHH
Confidence            999999999999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.87  E-value=0.00012  Score=58.08  Aligned_cols=107  Identities=18%  Similarity=0.240  Sum_probs=78.1

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++-++++.|. ++.+.++|.++ .+-               .=++|..|+.+++.+...   ..+..++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~---------------~G~v~~~dl~~~~~~~~~---~~~~~~v~~~   63 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVMER-GEL---------------VGLLTFREVLQAMAQHGA---GVLDTTVRAI   63 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEE---------------EEEEEHHHHHHHHHhcCC---chhcCCHHHH
Confidence            467899999999999997 46555555432 111               118999999998865311   1223456654


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+.+ +..++.+++..+|++.|.+.  +...+||++ +|+++|=++..+|-
T Consensus        64 --~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~l~Vv~-~~~~~Gvvt~~dl~  110 (112)
T cd04625          64 --MNPE-PIVASPDDSIDEVRRLMVER--HLRYLPVLD-GGTLLGVISFHDVA  110 (112)
T ss_pred             --hCCC-CeEECCCCCHHHHHHHHHHc--CCCeeeEEE-CCEEEEEEEHHHhh
Confidence              4666 88899999999999999875  347799998 69999999988774

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.87  E-value=0.00014  Score=58.58  Aligned_cols=107  Identities=13%  Similarity=0.156  Sum_probs=79.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..++++.+|++.|.+.  ....++|+|.+|+++|-++..+|....       +..   +   ..+.          
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~--~~~~~~Vvd~~g~~~G~vt~~dl~~~~-------~~~---~---~~~~----------   57 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEP--GIDLVVVCDPHGKLAGVLTKTDVVRQM-------GRC---G---GPGC----------   57 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhc--CCCEEEEECCCCCEEEEEehHHHHHHH-------hhc---C---CCcc----------
Confidence            67788999999999999775  457899999999999999888774310       000   0   0000          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             . .      .. ++.                  -...+++|.+..+|.+++..+..+
T Consensus        58 -----------------------~-~------~v-~~~------------------~~~~~~~v~~~~~l~~a~~~m~~~   88 (114)
T cd04619          58 -----------------------T-A------PV-ENV------------------MTRAVVSCRPGDLLHDVWQVMKQR   88 (114)
T ss_pred             -----------------------c-C------CH-HHH------------------hcCCCeeECCCCCHHHHHHHHHHc
Confidence                                   0 0      00 000                  123578999999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..+++=|+|++|.++|+|+..
T Consensus        89 ~~~~lpVvd~~~~~~Gvi~~~  109 (114)
T cd04619          89 GLKNIPVVDENARPLGVLNAR  109 (114)
T ss_pred             CCCeEEEECCCCcEEEEEEhH
Confidence            999999999999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.86  E-value=7.7e-05  Score=63.05  Aligned_cols=111  Identities=19%  Similarity=0.222  Sum_probs=80.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc-----------
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL-----------  164 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l-----------  164 (379)
                      +.++.+++++-+|++.|. +|...++|+++..+-               .=++|+.|+++++.......           
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~---------------~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~   67 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKP---------------VGVITYRDLAFAEFEDNERGLPKKSIKMKRK   67 (135)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCE---------------EEEEeHHHHHHHhhcccccccchhhhhhhhh
Confidence            356899999999999998 577888887653211               11899999999885321110           


Q ss_pred             -CC-------CCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 -NP-------TPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 -~p-------~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                       ++       ....++.++  ..++ +..|..+++..+|++.|.+.  +...+||++. |+++|-|+..+|-
T Consensus        68 ~~~~~~~~~~~~~~~v~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vv~~-~~~~Gvit~~di~  133 (135)
T cd04621          68 AGQKRYRYVKEVPLVAEDI--MTEE-IITVSPNDDVVDAAKLMLEA--NISGLPVVDN-DNIVGVITKTDIC  133 (135)
T ss_pred             cccccccccccccccHHHh--cCCC-CeEECCCCCHHHHHHHHHHc--CCCEEEEEeC-CEEEEEEEHHHHh
Confidence             00       113355555  3556 88999999999999999775  4467999987 9999999988763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.84  E-value=7.1e-05  Score=60.10  Aligned_cols=110  Identities=18%  Similarity=0.306  Sum_probs=80.8

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-cc-----CCCCC
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-LL-----NPTPN  169 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~l-----~p~p~  169 (379)
                      +.+++|++++-|+.+.|. ++.++++|+++  .+              -.=++|+.|+.+++..-.. .+     .+...
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~--------------~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~   66 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDISRLPVIEG--GK--------------LVGIVTEKDIADALRSFRPLVRDRHQERRIRN   66 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CE--------------EEEEEchHHHHHhhhhhhhcccchhhhhhhhc
Confidence            457899999999999987 58888888764  11              1228999999998764211 11     12223


Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      .++.++  .+.+ ...++.+++..+|++.|.+.  +...+||++. |+++|-|+..+|.
T Consensus        67 ~~~~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~Gvi~~~dl~  119 (121)
T cd04633          67 LPVSDI--MTRP-VITIEPDTSVSDVASLMLEN--NIGGLPVVDD-GKLVGIVTRTDIL  119 (121)
T ss_pred             cCHHHH--ccCC-ceEECCCCcHHHHHHHHHHc--CCCcccEEEC-CEEEEEEEHHHhh
Confidence            344432  3456 88999999999999999775  3478999998 9999999998874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.83  E-value=0.00017  Score=56.46  Aligned_cols=102  Identities=25%  Similarity=0.380  Sum_probs=78.2

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN  176 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG  176 (379)
                      ..++|+.++-++++.|. .|.++++|+++..+-               .=++|+.|+.+.+...         .++.+  
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------------~G~v~~~dl~~~~~~~---------~~v~~--   58 (109)
T cd04583           5 VTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKL---------------LGIVSLESLEQAYKEA---------KSLED--   58 (109)
T ss_pred             EEECCCCCHHHHHHHHHHCCCceEEEEcCCCcE---------------EEEEEHHHHHHHhhcC---------CcHhH--
Confidence            45899999999999998 488888887653111               1289999998875321         23333  


Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +..++ +..+..+++..+|+..|...  +...+|||+.+|+++|-|+..+|-
T Consensus        59 ~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~vv~~~g~~~Gvit~~~l~  107 (109)
T cd04583          59 IMLED-VFTVQPDASLRDVLGLVLKR--GPKYVPVVDEDGKLVGLITRSSLV  107 (109)
T ss_pred             hhcCC-ceEECCCCcHHHHHHHHHHc--CCceeeEECCCCeEEEEEehHHhh
Confidence            24566 88999999999999999774  557899999999999999988763

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.83  E-value=5.7e-05  Score=59.77  Aligned_cols=106  Identities=10%  Similarity=0.071  Sum_probs=77.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.++++.+|++.|.+.  ....++|++. |+++|-++..+|..+..              ....+.          
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~~~-~~~~G~i~~~~l~~~~~--------------~~~~~~----------   55 (113)
T cd04622           3 VVTVSPDDTIREAARLMREH--DVGALPVCEN-DRLVGIVTDRDIVVRAV--------------AEGRDP----------   55 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHc--CCCEEEEeeC-CEEEEEEEhHHHHHHHh--------------hccCCc----------
Confidence            77899999999999999764  3478999998 99999999887742100              000000          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             ...      .. .+.                  -.....++.+..++..++..+..+
T Consensus        56 -----------------------~~~------~~-~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~   87 (113)
T cd04622          56 -----------------------DTT------TV-GDV------------------MTRGVVTVTEDDDVDEAARLMREH   87 (113)
T ss_pred             -----------------------ccC------CH-HHh------------------ccCCccEECCCCCHHHHHHHHHHc
Confidence                                   000      00 000                  112367889999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++.|+|++|.+.|+|..+
T Consensus        88 ~~~~~~V~~~~~~~~G~it~~  108 (113)
T cd04622          88 QVRRLPVVDDDGRLVGIVSLG  108 (113)
T ss_pred             CCCeeeEECCCCcEEEEEEHH
Confidence            999999999999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.83  E-value=0.00014  Score=58.44  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=81.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|++.|.+.  +...++|+|.+|+++|-++..+|..+.-                 +..  +.+...+ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~~-----------------~~~--~~~~~~~-   60 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLES--GFTGLPVVQKAGELIGIITRRDIIRAGS-----------------VRT--SVEDQQR-   60 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHc--CCCcccEECCCCcEEEEEEcHHHHhhcc-----------------ccc--cccchhh-
Confidence            78899999999999999764  4579999999999999999988865310                 000  0000000 


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                          ..         ...     . .      .- .+                  --...++++.+..+|.+++..+..+
T Consensus        61 ----~~---------~~~-----~-~------~~-~~------------------~~~~~~~~v~~~~~l~~~~~~~~~~   96 (122)
T cd04635          61 ----TQ---------TKA-----S-P------TV-EK------------------IMSTPVYSVTPDDSIATAVELMLEH   96 (122)
T ss_pred             ----hh---------hhc-----c-C------cH-HH------------------HhcCCCeeECCCCCHHHHHHHHHHc
Confidence                00         000     0 0      00 00                  0123468999999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.+.|+++.+
T Consensus        97 ~~~~~~Vvd~~g~~~Gvit~~  117 (122)
T cd04635          97 DIGRLPVVNEKDQLVGIVDRH  117 (122)
T ss_pred             CCCeeeEEcCCCcEEEEEEhH
Confidence            999999999999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.80  E-value=7e-05  Score=58.91  Aligned_cols=104  Identities=17%  Similarity=0.114  Sum_probs=76.6

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|++.|.+.  ....++|++. |+++|-++..+|..+...           +    .+.          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~~-~~~~G~v~~~~l~~~~~~-----------~----~~~----------   54 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRER--RISSIVVVDD-GRPLGIVTERDILRLLAS-----------G----PDL----------   54 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHc--CCCEEEEeeC-CEEEEEEeHHHHHHHHhc-----------C----CCC----------
Confidence            77899999999999999764  3467899987 999999987776542100           0    000          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             ...       . .+                  --....+++++..+|.+++..+..+
T Consensus        55 -----------------------~~~-------v-~~------------------~~~~~~~~~~~~~~l~~~l~~~~~~   85 (111)
T cd04611          55 -----------------------QTP-------V-GE------------------VMSSPLLTVPADTSLYDARQLMREH   85 (111)
T ss_pred             -----------------------CcC-------H-HH------------------hcCCCceEECCCCCHHHHHHHHHHc
Confidence                                   000       0 00                  0112468899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++.|+|++|.+.|+|+..
T Consensus        86 ~~~~~~Vv~~~~~~~Gvi~~~  106 (111)
T cd04611          86 GIRHLVVVDDDGELLGLLSQT  106 (111)
T ss_pred             CCeEEEEECCCCcEEEEEEhH
Confidence            999999999999999999853

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.79  E-value=0.00016  Score=57.13  Aligned_cols=106  Identities=25%  Similarity=0.340  Sum_probs=80.0

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++++.++-|+++.|. ++.++++|+++  .+              -.=++|..|+.+++... + +  ....++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~--------------~~G~v~~~~l~~~~~~~-~-~--~~~~~i~~~   62 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEHRVSSLLVVDD--GR--------------LVGIVTDRDLRNRVVAE-G-L--DPDTPVSEV   62 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CE--------------EEEEEEhHHHHHHHhcc-C-C--CccCCHHHH
Confidence            356899999999999998 57888888765  21              01189999999987652 1 1  112345543


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+.+ +..+..+++..++++.|.+.  +...+||++. |+++|-|+..|+.
T Consensus        63 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~Giit~~di~  109 (111)
T cd04800          63 --MTAP-PITIPPDATVFEALLLMLER--GIHHLPVVDD-GRLVGVISATDLL  109 (111)
T ss_pred             --hCCC-CeEECCCCcHHHHHHHHHHc--CCCeeeEeEC-CEEEEEEEHHHhh
Confidence              3566 88999999999999999885  3478999987 9999999988874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=9.6e-05  Score=58.83  Aligned_cols=91  Identities=19%  Similarity=0.242  Sum_probs=72.4

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++.||++.|. +|+..++|++...+-               .=.+|..|+.+.+                  
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~---------------~Giv~~~dl~~~~------------------   49 (96)
T cd04614           3 VPTVWEETPLPVAVRIMELANVKALPVLDDDGKL---------------SGIITERDLIAKS------------------   49 (96)
T ss_pred             ccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCE---------------EEEEEHHHHhcCC------------------
Confidence            356899999999999998 678888887642211               1178999998743                  


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                           . +..+.++++..+|+++|.+.  ....+||++.+|+++|=|+..++-
T Consensus        50 -----~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVv~~~~~~~Giit~~di~   94 (96)
T cd04614          50 -----E-VVTATKRTTVSECAQKMKRN--RIEQIPIINGNDKLIGLLRDHDLL   94 (96)
T ss_pred             -----C-cEEecCCCCHHHHHHHHHHh--CCCeeeEECCCCcEEEEEEHHHhh
Confidence                 1 67889999999999999885  447899999999999999987763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.78  E-value=0.00012  Score=58.96  Aligned_cols=110  Identities=20%  Similarity=0.316  Sum_probs=80.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC------CCC
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP------TPN  169 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p------~p~  169 (379)
                      +.++.|++++-+|++.|. .|+++++|++++ +-               .=++|+.|+.+.+........+      ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~---------------~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~   66 (122)
T cd04637           3 VVTVEMDDRLEEVREIFEKHKFHHLLVVEDN-EL---------------VGVISDRDYLKAISPFLGTAGETEKDLATLN   66 (122)
T ss_pred             ceEeCCCCCHHHHHHHHHhCCCCEEEEEeCC-eE---------------EEEEEHHHHHHHHHHHhccccchHHHHHHHH
Confidence            467899999999999998 588888887651 11               1189999999987643221110      011


Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      .++.++  .+++ ++.+..+++..++++.|.+.  +...++||+.+|+++|=++..++
T Consensus        67 ~~~~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~vv~~~~~~~Gvit~~dl  119 (122)
T cd04637          67 RRAHQI--MTRD-PITVSPDTPVDEASKLLLEN--SISCLPVVDENGQLIGIITWKDL  119 (122)
T ss_pred             hHHHHh--hcCC-CeeeCCCCcHHHHHHHHHHc--CCCeEeEECCCCCEEEEEEHHHh
Confidence            233332  4566 89999999999999999774  44779999999999999987776

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.77  E-value=0.00027  Score=56.10  Aligned_cols=104  Identities=24%  Similarity=0.359  Sum_probs=81.6

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      +..+.|.+++.+|++.|. .++..+.|++.. ...                 ++|..|+++++........        .
T Consensus         9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~G-----------------iit~~di~~~~~~~~~~~~--------~   63 (117)
T COG0517           9 VITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVG-----------------IITERDILRALAAGGKRLL--------P   63 (117)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEE-----------------EEEHHHHHHHHhccCCccc--------c
Confidence            678999999999999999 577777776653 343                 8999999999987544322        1


Q ss_pred             cccccC-CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC-cEEeeeCcccc
Q 041297          175 HNIIDD-AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG-RLVGDISPFSL  227 (379)
Q Consensus       175 LG~I~~-~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG-kLIGeISa~~L  227 (379)
                      .+.+-. + +..+..+.+..+|++.|.+. .+...+||++.++ +++|-+|..|+
T Consensus        64 v~~v~~~~-~~~~~~~~~~~~~~~~m~~~-~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          64 VKEVMTKP-VVTVDPDTPLEEALELMVER-HKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             HHHhccCC-cEEECCCCCHHHHHHHHHHH-cCcCeEEEEECCCCeEEEEEEHHHc
Confidence            222222 5 89999999999999999873 2458999999996 99999998876

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.73  E-value=0.00017  Score=57.13  Aligned_cols=97  Identities=16%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             EeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccccc
Q 041297           99 HLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNI  177 (379)
Q Consensus        99 ~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~  177 (379)
                      .+.|+.++-||++.|. +|..+++|++. -+-               .=|+|..|+.+..           ..++.+  +
T Consensus         5 ~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~---------------~G~v~~~~l~~~~-----------~~~~~~--~   55 (104)
T cd04594           5 KVKDYDKVYEAKRIMIENDLLSLPVVDY-NKF---------------LGAVYLKDIENAT-----------YGDVVD--Y   55 (104)
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEEC-CEE---------------EEEEEHHHHhhhc-----------ccchhh--h
Confidence            5789999999999998 58888888764 211               1189999998642           123444  3


Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ..+. ...|+.+++..+|++.|.+.  +...+|||| +|+++|-|+..+|-
T Consensus        56 ~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~~~Vv~-~~~~iGvit~~dl~  102 (104)
T cd04594          56 IVRG-IPYVRLTSTAEEAWEVMMKN--KTRWCPVVD-DGKFKGIVTLDSIL  102 (104)
T ss_pred             hhcC-CcEEcCCCCHHHHHHHHHHc--CcceEEEEE-CCEEEEEEEHHHhh
Confidence            4566 78999999999999999875  447799998 69999999988774

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.73  E-value=0.00023  Score=56.16  Aligned_cols=102  Identities=19%  Similarity=0.246  Sum_probs=77.3

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++++++..+|++.|.+.  ....++|+|.+|+++|-++..+|...-       .           +...+   +   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~-------~-----------~~~~~---~---   57 (110)
T cd04605           4 VVTISEDASIKEAAKLMIEE--NINHLPVVDEDGRLVGIVTSWDISKAV-------A-----------RDKKS---V---   57 (110)
T ss_pred             CEEECCCCCHHHHHHHHHhC--CCceEEEECCCCcEEEEEeHHHHHHHH-------h-----------hCccC---H---
Confidence            77899999999999999763  336799999999999999887774200       0           00000   0   


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                                         .+.                  -...+.+|.+..+|.+++..+..+
T Consensus        58 -----------------------------------~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~   84 (110)
T cd04605          58 -----------------------------------EDI------------------MTRNVITATPDEPIDVAARKMERH   84 (110)
T ss_pred             -----------------------------------HHh------------------cCCCCeEECCCCcHHHHHHHHHHh
Confidence                                               000                  012367889999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++.|+|++|.+.|+|+.+
T Consensus        85 ~~~~~~Vv~~~~~~~G~v~~~  105 (110)
T cd04605          85 NISALPVVDAENRVIGIITSE  105 (110)
T ss_pred             CCCEEeEECCCCcEEEEEEHH
Confidence            999999999999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.73  E-value=0.00024  Score=56.28  Aligned_cols=104  Identities=22%  Similarity=0.370  Sum_probs=79.7

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++++.++-++++.|. ++..+++|+++  .+              -.=++|+.|+.+.+....      +..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--------------~~G~v~~~dl~~~~~~~~------~~~~~~~~   61 (110)
T cd04595           4 VKTVRPEATIEEARELLLRYGHTALPVVEG--GR--------------VVGIISRRDVEKALRHGL------GHAPVKDY   61 (110)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CE--------------EEEEEEHHHHHHHHhccc------ccCcHHHH
Confidence            457899999999999998 57778888775  21              011899999988663211      34455553


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..+..+++..+|++.|.+.  +...+||++ +|+++|=++..++-
T Consensus        62 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~V~~-~~~~~Gvvt~~di~  108 (110)
T cd04595          62 --MSTD-VVTVPPDTPLSEVQELMVEH--DIGRVPVVE-DGRLVGIVTRTDLL  108 (110)
T ss_pred             --hcCC-CEEECCCCcHHHHHHHHHHc--CCCeeEEEe-CCEEEEEEEhHHhh
Confidence              3566 88999999999999999886  447899999 89999999887763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.71  E-value=0.00029  Score=55.70  Aligned_cols=107  Identities=22%  Similarity=0.316  Sum_probs=78.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHH-HHHHhhhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLI-RYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVv-RFLl~~ig~l~p~p~~SI~s  174 (379)
                      +..++|++++-||++.|. +|.+.+.|+++  .+              -.=++|+.|++ +.+.....   + ...++.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--------------~~G~i~~~~l~~~~~~~~~~---~-~~~~~~~   62 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVCEN--DR--------------LVGIVTDRDIVVRAVAEGRD---P-DTTTVGD   62 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CE--------------EEEEEEhHHHHHHHhhccCC---c-ccCCHHH
Confidence            356899999999999998 57778877765  21              01189999987 44433211   1 1223554


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +  .+++ +..+..+++.-++++.|...  +...++|++.+|+++|-++..++.
T Consensus        63 ~--~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~it~~di~  111 (113)
T cd04622          63 V--MTRG-VVTVTEDDDVDEAARLMREH--QVRRLPVVDDDGRLVGIVSLGDLA  111 (113)
T ss_pred             h--ccCC-ccEECCCCCHHHHHHHHHHc--CCCeeeEECCCCcEEEEEEHHHhh
Confidence            3  4566 88999999999999999775  447899999999999999988774

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.68  E-value=0.00014  Score=70.54  Aligned_cols=106  Identities=12%  Similarity=0.050  Sum_probs=77.9

Q ss_pred             CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHH
Q 041297          181 AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLV  260 (379)
Q Consensus       181 ~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~  260 (379)
                      + +..|+++++..+|++.|.+.  ....++|+|++|+++|-++..||+..       +.        ...+.   +    
T Consensus       213 ~-~~~v~~~~sl~~a~~~~~~~--~~~~~vVvd~~g~lvGivt~~Dl~~~-------~~--------~~~~~---~----  267 (326)
T PRK10892        213 E-IPHVSKTASLRDALLEITRK--NLGMTVICDDNMKIEGIFTDGDLRRV-------FD--------MGIDL---R----  267 (326)
T ss_pred             C-CeEECCCCCHHHHHHHHHhc--CCCeEEEEcCCCcEEEEEecHHHHHH-------Hh--------cCCCc---c----
Confidence            6 99999999999999999764  34778888999999999998887530       00        00000   0    


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHH
Q 041297          261 RLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQAL  340 (379)
Q Consensus       261 ~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAl  340 (379)
                                               . .+      . ++.                  -+..++++++..+|.+++..|.
T Consensus       268 -------------------------~-~~------v-~~i------------------m~~~~~~v~~~~~l~~a~~~m~  296 (326)
T PRK10892        268 -------------------------Q-AS------I-ADV------------------MTPGGIRVRPGILAVDALNLMQ  296 (326)
T ss_pred             -------------------------c-CC------H-HHh------------------cCCCCEEECCCCCHHHHHHHHH
Confidence                                     0 00      0 010                  1134789999999999999999


Q ss_pred             HcCCcEEEEeeCCCCcccceEee
Q 041297          341 ARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       341 aHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      .|+++++=|+| +|.++|+|+.+
T Consensus       297 ~~~~~~lpVv~-~~~lvGiit~~  318 (326)
T PRK10892        297 SRHITSVLVAD-GDHLLGVLHMH  318 (326)
T ss_pred             HCCCcEEEEee-CCEEEEEEEhH
Confidence            99999997776 68899999854

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.68  E-value=0.00025  Score=55.84  Aligned_cols=105  Identities=15%  Similarity=0.199  Sum_probs=80.0

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      ..++|++++-++++.|. .+..+++|++..  +..                 ++|.+|+.+++.+.-    .....++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G-----------------~v~~~~l~~~~~~~~----~~~~~~v~~   62 (114)
T cd04613           4 VTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVG-----------------IVSLDDIREILFDPS----LYDLVVASD   62 (114)
T ss_pred             eeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEE-----------------EEEHHHHHHHHhccc----ccccEEHHH
Confidence            46899999999999998 477787777642  222                 899999999875421    111234444


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC-CCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE-EGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~-dGkLIGeISa~~L~  228 (379)
                        +.+++ +..|.++++..++++.|.+.  ....++|++. +|+++|=++..+|.
T Consensus        63 --~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~~Gvvt~~di~  112 (114)
T cd04613          63 --IMTKP-PVVVYPEDSLEDALKKFEDS--DYEQLPVVDDDPGKLLGILSRSDLL  112 (114)
T ss_pred             --hccCC-CcEEcCCCCHHHHHHHHhhC--CccEeeEEeCCCCEEEEEEEhHHhh
Confidence              35666 88999999999999999875  4478999998 89999999887764

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.68  E-value=0.00017  Score=58.01  Aligned_cols=111  Identities=18%  Similarity=0.254  Sum_probs=78.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh--cc---cCCCCCC
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI--GL---LNPTPNQ  170 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i--g~---l~p~p~~  170 (379)
                      +..+.|++++.++++.|. ++.++++|++...+               -.-++|+.|+++++....  ..   +......
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~---------------~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~   67 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGE---------------LIGIITRRDIIRAGSVRTSVEDQQRTQTKASP   67 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcccEECCCCc---------------EEEEEEcHHHHhhccccccccchhhhhhhccC
Confidence            356899999999999998 57778877754211               122899999988642110  00   0001233


Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      ++.++  ..++ +..++.+++..++++.|.+.  +...+|||+.+|+++|=++..+|
T Consensus        68 ~~~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vvd~~g~~~Gvit~~dl  119 (122)
T cd04635          68 TVEKI--MSTP-VYSVTPDDSIATAVELMLEH--DIGRLPVVNEKDQLVGIVDRHDV  119 (122)
T ss_pred             cHHHH--hcCC-CeeECCCCCHHHHHHHHHHc--CCCeeeEEcCCCcEEEEEEhHHh
Confidence            34432  3556 89999999999999999875  44789999999999999988776

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.66  E-value=0.00024  Score=56.46  Aligned_cols=99  Identities=22%  Similarity=0.352  Sum_probs=73.8

Q ss_pred             eCCCCchhHHHHHHhc-C-----ccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297          100 LKPSASLLEAVDLLLG-G-----VQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN  173 (379)
Q Consensus       100 V~P~tsLLdAie~m~~-G-----~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~  173 (379)
                      ++|++++-|+++.|.+ +     ...++|+++..+-               .=++|.+|+++.         + +..++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~---------------~G~v~~~~l~~~---------~-~~~~v~   56 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRL---------------LGVVSLRDLLLA---------D-PDTPVS   56 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCE---------------EEEEEHHHHhcC---------C-CcchHH
Confidence            6799999999999984 5     3456666542111               118999999761         1 234555


Q ss_pred             ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ++  .+++ ...+..+++..++++.|...  +...++||+.+|+++|-|+..+|-
T Consensus        57 ~~--~~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~dll  106 (109)
T cd04606          57 DI--MDTD-VISVSADDDQEEVARLFEKY--DLLALPVVDEEGRLVGIITVDDVI  106 (109)
T ss_pred             HH--hCCC-CeEEcCCCCHHHHHHHHHHc--CCceeeeECCCCcEEEEEEhHHhh
Confidence            53  4667 89999999999999999775  336799999999999999998874

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.66  E-value=0.00025  Score=56.76  Aligned_cols=110  Identities=22%  Similarity=0.321  Sum_probs=79.4

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc-----CCCCCC
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL-----NPTPNQ  170 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l-----~p~p~~  170 (379)
                      +..+++++++-+|++.|. .+..+++|++...+-               .=++|+.|+.+++.+..+..     ......
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~   67 (121)
T cd04584           3 VVTITPTTTIAEALELMREHKIRHLPVVDEEGRL---------------VGIVTDRDLRDASPSPFTTLSEHELYLLLKM   67 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCcccEECCCCcE---------------EEEEEHHHHHHHhhhhcccchhhhhhhhcCc
Confidence            467899999999999998 466677777653111               11899999998875432211     123344


Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      ++.++  .+++ +..++.+++..++++.|.+.  ....+||++. |+++|-++..++
T Consensus        68 ~v~~~--~~~~-~~~i~~~~~l~~~~~~~~~~--~~~~~~V~~~-~~~~Gvv~~~di  118 (121)
T cd04584          68 PVKEI--MTKD-VITVHPLDTVEEAALLMREH--RIGCLPVVED-GRLVGIITETDL  118 (121)
T ss_pred             CHHHH--hhCC-CeEECCCCcHHHHHHHHHHc--CCCeEEEeeC-CEEEEEEEHHHh
Confidence            55553  3556 88999999999999999775  3478999987 999999987765

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.65  E-value=0.00017  Score=58.45  Aligned_cols=108  Identities=13%  Similarity=0.075  Sum_probs=78.0

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++.-+|++.|.+.  ....++|+|.+|+++|=++..+|....                  .....++      
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~--~~~~~~V~d~~~~~~Givt~~dl~~~~------------------~~~~~~~------   56 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLE--DVGSLFVVDEDGDLVGVVSRKDLLKAS------------------IGGADLQ------   56 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCCEEEEEEHHHHHHHH------------------HcCCCcc------
Confidence            67889999999999999753  447999999999999999887765410                  0000000      


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             . .      .. ++.                +.+.....++.+..+|.++|..+..|
T Consensus        57 -----------------------~-~------~~-~~~----------------~~~~~~~~~v~~~~~l~~~~~~~~~~   89 (118)
T cd04617          57 -----------------------K-V------PV-GVI----------------MTRMPNITTTTPEESVLEAAKKLIEH   89 (118)
T ss_pred             -----------------------C-C------CH-HHH----------------hCCCCCcEEECCCCcHHHHHHHHHHc
Confidence                                   0 0      00 000                01112367999999999999999999


Q ss_pred             CCcEEEEeeCC---CCcccceEee
Q 041297          343 RDRLRSMAKAE---NPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e---~~l~~~v~~~  363 (379)
                      +++++=|+|++   |.++|+|+-.
T Consensus        90 ~~~~lpVvd~~~~~~~l~Gvit~~  113 (118)
T cd04617          90 QVDSLPVVEKVDEGLEVIGRITKT  113 (118)
T ss_pred             CCCEeeEEeCCCccceEEEEEEhh
Confidence            99999999998   6899999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.65  E-value=0.00024  Score=68.57  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=82.4

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|++++-||++.|. .+...++|++...+-               .=++|..|+.+.+....     .+..++.+ 
T Consensus       209 ~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~---------------iG~vt~~dl~~~~~~~~-----~~~~~v~~-  267 (321)
T PRK11543        209 IPQVALTASVMDAMLELSRTGLGLVAVCDAQQQV---------------QGVFTDGDLRRWLVGGG-----ALTTPVNE-  267 (321)
T ss_pred             CcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEecHHHHHHHHhCCC-----CcCCcHHH-
Confidence            667999999999999998 466777777643221               11899999998775421     12344554 


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                       +.+++ +..+..+++..+|++.|.+.  +...+||||.+|+++|-|+..|+-
T Consensus       268 -im~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~lvGvIt~~di~  316 (321)
T PRK11543        268 -AMTRG-GTTLQAQSRAIDAKEILMKR--KITAAPVVDENGKLTGAINLQDFY  316 (321)
T ss_pred             -hcCCC-CEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHH
Confidence             44666 88999999999999999886  558999999999999999988873

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.63  E-value=0.0006  Score=53.99  Aligned_cols=106  Identities=19%  Similarity=0.370  Sum_probs=78.2

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|++++-|+++.|. ++.+.++|+++. +-               +=++|+.|+.+++...-  +. ....++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~---------------~G~v~~~dl~~~~~~~~--~~-~~~~~~~~~   63 (112)
T cd04802           3 VITVDPDTTVYEAANIMTENNIGRLIVVDNE-KP---------------VGIITERDLVKKVVSRN--LK-PREVPVGEV   63 (112)
T ss_pred             cEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EE---------------EEEEEHHHHHHHHhhcc--CC-cccCCHHHh
Confidence            346899999999999998 467777776542 11               12999999999886531  00 123345443


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                        .+++ +..++.+++..++++.|.+.  +...+|||+.+ +++|=|+..++
T Consensus        64 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~-~~~Gvi~~~di  109 (112)
T cd04802          64 --MSTP-LITIDPNASLNEAAKLMAKH--GIKRLPVVDDD-ELVGIVTTTDI  109 (112)
T ss_pred             --cCCC-cEEECCCCCHHHHHHHHHHc--CCCeeEEeeCC-EEEEEEEhhhh
Confidence              4567 99999999999999999875  33679999876 99999998876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.62  E-value=0.00019  Score=56.79  Aligned_cols=103  Identities=14%  Similarity=0.158  Sum_probs=78.4

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR  261 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~  261 (379)
                      +..++.+++..+|++.|.+.  ....++|++.+ |+++|-++..+|..+..                  +..  ++    
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~--~~~~~~v~~~~~~~~~G~v~~~~l~~~~~------------------~~~--~~----   56 (111)
T cd04590           3 IVALDADDTLEEILELIAES--GHSRFPVYDGDLDNIIGVVHVKDLLRALA------------------EGE--ED----   56 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhC--CCceEEEECCCCceEEEEEEHHHHHHHHH------------------cCC--Cc----
Confidence            88999999999999999764  34789999998 99999998888754110                  000  00    


Q ss_pred             HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297          262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA  341 (379)
Q Consensus       262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla  341 (379)
                                              . .       . ++               +  .  ....++.+..+|.+++..+..
T Consensus        57 ------------------------~-~-------~-~~---------------~--~--~~~~~v~~~~~l~~~~~~~~~   84 (111)
T cd04590          57 ------------------------L-D-------L-RD---------------L--L--RPPLFVPESTPLDDLLEEMRK   84 (111)
T ss_pred             ------------------------C-C-------H-HH---------------H--h--cCCeecCCCCcHHHHHHHHHh
Confidence                                    0 0       0 00               0  0  125778999999999999999


Q ss_pred             cCCcEEEEeeCCCCcccceEee
Q 041297          342 RRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       342 HRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      |+.+++=|+|++|.++|+|+..
T Consensus        85 ~~~~~~~Vv~~~~~~~Gvit~~  106 (111)
T cd04590          85 ERSHMAIVVDEYGGTAGLVTLE  106 (111)
T ss_pred             cCCcEEEEEECCCCEEEEeEHH
Confidence            9999999999999999999854

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.62  E-value=0.0004  Score=56.54  Aligned_cols=116  Identities=13%  Similarity=0.089  Sum_probs=79.7

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR  261 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~  261 (379)
                      +..++.+++..+|++.|.+-  ....++|+|.+ |+++|-++..||...-...   ....+..++.              
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~--~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~---~~~~~~~~~~--------------   63 (123)
T cd04627           3 FIPVPSTASLFQAIEILGSG--GIHRVAVTEEESGEVIGILSQRRLVEFLWEN---ARSFPGLDPL--------------   63 (123)
T ss_pred             ceecCCCCCHHHHHHHHhhC--CcceEEEEeCCCCcEEEEEEHHHHHHHHHHh---HHhccchhhh--------------
Confidence            78899999999999999653  34789999997 9999999988765410000   0000000000              


Q ss_pred             HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297          262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA  341 (379)
Q Consensus       262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla  341 (379)
                                    .     .   ...                 .        ..........++.+..+|.+++..|..
T Consensus        64 --------------~-----~---~~~-----------------~--------~~~~~~~~~~~v~~~~~l~~a~~~m~~   96 (123)
T cd04627          64 --------------Y-----P---IPL-----------------R--------DLTIGTSDVISINGDQPLIDALHLMHN   96 (123)
T ss_pred             --------------h-----h---hhh-----------------h--------hcccCcCCceEeCCCCCHHHHHHHHHH
Confidence                          0     0   000                 0        000012346799999999999999999


Q ss_pred             cCCcEEEEeeCCCCcccceEeeh
Q 041297          342 RRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       342 HRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      |+++++=|+|++|.++|+|+.+.
T Consensus        97 ~~~~~lpVvd~~~~~vGiit~~d  119 (123)
T cd04627          97 EGISSVAVVDNQGNLIGNISVTD  119 (123)
T ss_pred             cCCceEEEECCCCcEEEEEeHHH
Confidence            99999999999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.62  E-value=0.0002  Score=57.62  Aligned_cols=115  Identities=14%  Similarity=0.161  Sum_probs=79.5

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+++..+|+..|.+.  ..+.++|++.+|+++|-++..+|..+...           .+.....+      +   
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-----------~~~~~~~~------~---   60 (122)
T cd04803           3 VVTLSEDDSLADAEELMREH--RIRHLPVVNEDGKLVGLLTQRDLLRAALS-----------SLSDNGEE------S---   60 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHc--CcccccEECCCCCEEEEEEHHHHHHHhcc-----------cccccccc------c---
Confidence            67899999999999999875  33689999999999999998887542100           00000000      0   


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                      ..     . .     ...         .        ...--+...++|.+..++.+++..+..+
T Consensus        61 ----------------~~-----~-~-----~~~---------~--------v~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (122)
T cd04803          61 ----------------LT-----K-E-----RDV---------P--------VAEVMKTDVLTVTPDTPLREAAEIMVEN   96 (122)
T ss_pred             ----------------cc-----c-c-----cCc---------C--------HHHhhCCCCeEeCCCCcHHHHHHHHHHc
Confidence                            00     0 0     000         0        0000123468999999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+++..
T Consensus        97 ~~~~~~Vv~~~~~~~Gvit~~  117 (122)
T cd04803          97 KIGCLPVVDDKGTLVGIITRS  117 (122)
T ss_pred             CCCeEEEEcCCCCEEEEEEHH
Confidence            999999999999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.61  E-value=0.00015  Score=59.87  Aligned_cols=100  Identities=14%  Similarity=0.106  Sum_probs=75.3

Q ss_pred             cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----------
Q 041297           17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----------   85 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----------   85 (379)
                      +++....++++|++.+.+.+...+||=+.                     ..+++|.++.-|++.++.+           
T Consensus         4 ~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---------------------~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~   62 (132)
T cd04636           4 ITVKKDDTLRDVVEILLTGKISGVPVVDN---------------------EGRVVGIVSEGDLIRKIYKGKGLFYVTLLY   62 (132)
T ss_pred             eEeCCCCcHHHHHHHHHHhCCCccceECC---------------------CCCEEEEEeHHHHHHHHhccCCcccccccc
Confidence            56778899999999998887777787652                     2469999999999876642           


Q ss_pred             -----------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEE
Q 041297           86 -----------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCW  147 (379)
Q Consensus        86 -----------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~  147 (379)
                                       ++++..   .....++++++|.++++.|. .|.++++|+++ .+-+               =+
T Consensus        63 ~~~~~~~~~~~~~~~~~v~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~i---------------Gv  123 (132)
T cd04636          63 SVIFLDESKIKKLLGKKVEEIMT---KKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLV---------------GI  123 (132)
T ss_pred             cccccchHHHHHHcCCCHHHhcc---CCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEE---------------EE
Confidence                             112221   23577899999999999998 68888988875 2111               18


Q ss_pred             eeHHHHHHH
Q 041297          148 LTQEDLIRY  156 (379)
Q Consensus       148 LTQeDVvRF  156 (379)
                      +|+.|+++|
T Consensus       124 it~~dl~~~  132 (132)
T cd04636         124 ISRGDIIRS  132 (132)
T ss_pred             EEHHHhhcC
Confidence            999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.60  E-value=0.00031  Score=54.80  Aligned_cols=100  Identities=20%  Similarity=0.263  Sum_probs=76.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      ...++|++++-++++.|. +|.+.++|.+++  +              -.-++|..|+.++.          ...++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--~--------------~~Giv~~~~l~~~~----------~~~~~~~~   56 (105)
T cd04599           3 PITIDPLDSVGRAARLMEKHRIGGLPVVEDG--K--------------LVGIITSRDVRRAH----------PNRLVADA   56 (105)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEECC--E--------------EEEEEehHHhhccc----------ccCCHHHH
Confidence            356899999999999998 577888876531  1              12389999998743          12234443


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..++.+++..+|++.|.+.  +...+||++. |+++|=|+..++.
T Consensus        57 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          57 --MTRE-VVTISPEASLLEAKRLMEEK--KIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             --ccCC-CEEECCCCCHHHHHHHHHHc--CCCEeeEEEC-CEEEEEEEHHHhc
Confidence              4667 89999999999999999875  3467999997 9999999988874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.59  E-value=0.00032  Score=56.07  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=77.9

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|++.|.+.- ....++|+|.+|+++|-++..+|......           +.    +.          
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-----------~~----~~----------   56 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGS-NQRRFVVVDNEGRYVGIISLADLRAIPTS-----------QW----AQ----------   56 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccC-CceeEEEEcCCCcEEEEEEHHHHHHHHHh-----------hc----cc----------
Confidence            788999999999999886432 24689999999999999998887541100           00    00          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             ...         .+.                +.......+..+..+|..++.++..|
T Consensus        57 -----------------------~~v---------~~~----------------~~~~~~~~~v~~~~~l~~a~~~~~~~   88 (114)
T cd04801          57 -----------------------TTV---------IQV----------------MTPAAKLVTVLSEESLAEVLKLLEEQ   88 (114)
T ss_pred             -----------------------cch---------hhh----------------hcccccceEECCCCcHHHHHHHHHHC
Confidence                                   000         000                00112346889999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+++..
T Consensus        89 ~~~~l~Vv~~~~~~~Gvl~~~  109 (114)
T cd04801          89 GLDELAVVEDSGQVIGLITEA  109 (114)
T ss_pred             CCCeeEEEcCCCcEEEEEecc
Confidence            999999999999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.59  E-value=0.00039  Score=59.60  Aligned_cols=100  Identities=17%  Similarity=0.229  Sum_probs=70.5

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC-CCC-----
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP-TPN-----  169 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p-~p~-----  169 (379)
                      +..+.|++++-||++.|. ++.+.++|+++.-+-               +=+||..|+++++...-  +.. ...     
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l---------------~Givt~~Dl~~~~~~~~--~~~~~~~~~~~~   65 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFL---------------EGILTLGDIQRFLFTNK--TTRVQPEDETKQ   65 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeE---------------EEEEEHHHHHHHHhhcc--ccccccchhhcc
Confidence            457899999999999999 688888887653211               11899999999997521  111 110     


Q ss_pred             ------Ccccccccc----cCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC
Q 041297          170 ------QPINSHNII----DDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG  216 (379)
Q Consensus       170 ------~SI~sLG~I----~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG  216 (379)
                            ..+..-+++    ..+ +..+..++++.+|+++|.+.  +...+|||+.++
T Consensus        66 ~~~~~v~~i~~~~~~~~~~~~~-~~~v~~~~~l~ea~~~m~~~--~~~~lPVvd~~~  119 (133)
T cd04592          66 TNTCLVSSVCTKGISYGGQECG-LWTCTPDTDLTTAKKLMEAK--GVKQLPVVKRGV  119 (133)
T ss_pred             cccccHHHHhhhhhhhcccCCC-CEEECCCCCHHHHHHHHHHc--CCCcCCEecCCc
Confidence                  012211222    356 88999999999999999886  558999999743

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.57  E-value=0.00052  Score=55.32  Aligned_cols=118  Identities=11%  Similarity=0.110  Sum_probs=81.8

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL  259 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l  259 (379)
                      ++ +..+..+++..++++.|.+.  ....++|++.+|+++|=++..+|..+.....+       ..+..+.+        
T Consensus         2 ~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~-------~~~~~~~~--------   63 (124)
T cd04600           2 RD-VVTVTPDTSLEEAWALLRRH--RIKALPVVDGDRRLVGIVTQRDLLRHARPDGR-------RPLRGRLR--------   63 (124)
T ss_pred             CC-cEEeCCCCCHHHHHHHHHHc--CCceeeEECCCCCEEEEEEHHHHHhhhccccc-------chhhhhhh--------
Confidence            44 78899999999999999764  34689999999999999998888653210000       00000000        


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297          260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA  339 (379)
Q Consensus       260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA  339 (379)
                                        ....    . .                 .        ...--+..++++.+..+|..++..+
T Consensus        64 ------------------~~~~----~-~-----------------~--------i~~~~~~~~~~~~~~~~l~~~~~~~   95 (124)
T cd04600          64 ------------------GRDK----P-E-----------------T--------VGDIMSPPVVTVRPDTPIAELVPLL   95 (124)
T ss_pred             ------------------cccc----c-c-----------------c--------HHHhccCCCeeeCCCCcHHHHHHHH
Confidence                              0000    0 0                 0        0000123578999999999999999


Q ss_pred             HHcCCcEEEEeeCCCCcccceEee
Q 041297          340 LARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       340 laHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..++.+++=|+|++|.++|+|+..
T Consensus        96 ~~~~~~~~~Vv~~~g~~~Gvit~~  119 (124)
T cd04600          96 ADGGHHHVPVVDEDRRLVGIVTQT  119 (124)
T ss_pred             HhcCCCceeEEcCCCCEEEEEEhH
Confidence            999999999999999999999753

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.55  E-value=0.00071  Score=53.68  Aligned_cols=100  Identities=14%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|++.|.+.  ....++|+|.+|+++|-++..+|.....                  +  .|..++   
T Consensus         4 ~~~~~~~~~~~~a~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~~------------------~--~~v~~~---   58 (108)
T cd04596           4 TGYLTTTDTVKDWHELNKET--GHSRFPVVDEKNKVVGIVTSKDVAGKDP------------------D--TTIEKV---   58 (108)
T ss_pred             cEEeCCCCCHHHHHHHHHHc--CCCceeEECCCCeEEEEecHHHHhcccc------------------c--ccHHHH---
Confidence            78899999999999999775  3468999999999999998877753110                  0  000000   


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                                                              -...+.++.+..+|.+++..+..+
T Consensus        59 --------------------------------------------------------~~~~~~~v~~~~~l~~~~~~~~~~   82 (108)
T cd04596          59 --------------------------------------------------------MTKNPITVNPKTSVASVAHMMIWE   82 (108)
T ss_pred             --------------------------------------------------------hcCCCeEECCCCCHHHHHHHHHHc
Confidence                                                                    012367899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+++.+
T Consensus        83 ~~~~~~Vv~~~~~~~G~it~~  103 (108)
T cd04596          83 GIEMLPVVDDNKKLLGIISRQ  103 (108)
T ss_pred             CCCeeeEEcCCCCEEEEEEHH
Confidence            999999999999999999854

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.54  E-value=0.00048  Score=64.49  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=78.0

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|+.++-+|++.|. .+...++|+++..+-               .=++|+.|+.+++.+..     -+..++.++
T Consensus       166 ~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~---------------~Givt~~dl~~~~~~~~-----~~~~~v~~i  225 (268)
T TIGR00393       166 LPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQL---------------VGVFTDGDLRRALLGGG-----SLKSEVRDF  225 (268)
T ss_pred             CCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCE---------------EEEEEcHHHHHHHhcCC-----cccCcHHHh
Confidence            557889999999999998 577788777643221               12899999999765311     234556654


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDIS  223 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeIS  223 (379)
                        ..++ +..|..+++..+|++.|.+.  +...+||||.+|+++|-|.
T Consensus       226 --m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       226 --MTLG-PKTFKLDALLLEALEFLERR--KITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             --CCCC-CeEECCCCcHHHHHHHHHHc--CCcEEEEECCCCeEEEEEC
Confidence              4666 88999999999999999885  4489999999999999763

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.54  E-value=0.00017  Score=70.82  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=88.4

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFC   88 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~   88 (379)
                      +-|++.-..||.+|.+.+-++++...||-+                      ..++||+++.-||.--+++      ||+
T Consensus       181 ~~i~v~~d~tl~eaak~f~~~~i~GaPVvd----------------------~dk~vGiit~~dI~~aia~g~~~~kV~~  238 (294)
T COG2524         181 KLITVRPDDTLREAAKLFYEKGIRGAPVVD----------------------DDKIVGIITLSDIAKAIANGNLDAKVSD  238 (294)
T ss_pred             CceEecCCccHHHHHHHHHHcCccCCceec----------------------CCceEEEEEHHHHHHHHHcCCccccHHH
Confidence            447788899999999999999999999987                      2379999999999988885      999


Q ss_pred             cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHH
Q 041297           89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL  158 (379)
Q Consensus        89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl  158 (379)
                      +.-+.   +.+++.++.+.|||.+|- +|+-||+|+++..|-.+               .+|++||++-|.
T Consensus       239 ~M~k~---vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvG---------------iITrTDIL~~ia  291 (294)
T COG2524         239 YMRKN---VITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVG---------------IITRTDILTRIA  291 (294)
T ss_pred             HhccC---CceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEE---------------EEehHHHHHHhh
Confidence            88754   789999999999999998 79999999876544311               899999998664

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.53  E-value=0.00038  Score=67.61  Aligned_cols=108  Identities=23%  Similarity=0.194  Sum_probs=79.6

Q ss_pred             ceEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           96 IVRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        96 ll~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      .+..+.|+++|.||++.|.+ |...++|++...+-               .=.+|..|+.|.+....    +++..++.+
T Consensus       213 ~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~l---------------vGivt~~Dl~~~~~~~~----~~~~~~v~~  273 (326)
T PRK10892        213 EIPHVSKTASLRDALLEITRKNLGMTVICDDNMKI---------------EGIFTDGDLRRVFDMGI----DLRQASIAD  273 (326)
T ss_pred             CCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcE---------------EEEEecHHHHHHHhcCC----CcccCCHHH
Confidence            35679999999999999984 54444446532211               11899999988654321    334456665


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +  .+++ +..|..++++.+|++.|.+.  +...+|||+ +|+++|=|+..||-
T Consensus       274 i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVv~-~~~lvGiit~~dil  321 (326)
T PRK10892        274 V--MTPG-GIRVRPGILAVDALNLMQSR--HITSVLVAD-GDHLLGVLHMHDLL  321 (326)
T ss_pred             h--cCCC-CEEECCCCCHHHHHHHHHHC--CCcEEEEee-CCEEEEEEEhHHhH
Confidence            3  4667 89999999999999999875  557899997 68999999988874

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.53  E-value=0.00057  Score=53.58  Aligned_cols=99  Identities=16%  Similarity=0.194  Sum_probs=76.5

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+.+..+|+..|++.  ....++|++.+|+++|-++..+|.....       + +..+++               
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~--~~~~~~v~d~~g~~~Giv~~~dl~~~~~-------~-~~~~~~---------------   57 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDS--DLRALTVVDADGQPLGFVTRREAARASG-------G-CCGDHA---------------   57 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhc--CCCEEEEECCCCCEEEEEeHHHHHHhcc-------c-chhhhc---------------
Confidence            67889999999999998654  3368899999999999999888764210       0 000000               


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                                                               +....++.+..+|.+++..+..+
T Consensus        58 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
T cd04582          58 ---------------------------------------------------------EPFKVTVSVDDDLRIVLSRMFAH   80 (106)
T ss_pred             ---------------------------------------------------------ccCCEEECCCCCHHHHHHHHHHC
Confidence                                                                     01246789999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ++.++=|+|++|.++|+++-+
T Consensus        81 ~~~~~~Vv~~~~~~~Gvi~~~  101 (106)
T cd04582          81 DMSWLPCVDEDGRYVGEVTQR  101 (106)
T ss_pred             CCCeeeEECCCCcEEEEEEHH
Confidence            999999999999999999743

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.53  E-value=0.00055  Score=53.62  Aligned_cols=101  Identities=15%  Similarity=0.263  Sum_probs=75.4

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.+++++-++++.|. .+.++++|++.  ++              -.-+++..|+++.        .  ...++.++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--------------~~g~v~~~~l~~~--------~--~~~~~~~~   57 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKETGHDGFPVVDN--GK--------------VVGIVSARDLLGK--------D--PDETVEEI   57 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CE--------------EEEEEEHHHhhcc--------C--ccccHHHh
Confidence            456899999999999998 46677777653  21              1128999998752        1  13345544


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .++. +..+..+++..+|++.|.+.  +...+||++.+|+++|-|+..+|-
T Consensus        58 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~g~~~Gvi~~~di~  105 (107)
T cd04610          58 --MSKD-LVVAVPEMDIMDAARVMFRT--GISKLPVVDENNNLVGIITNTDVI  105 (107)
T ss_pred             --CCCC-CeEECCCCCHHHHHHHHHHh--CCCeEeEECCCCeEEEEEEHHHhh
Confidence              3556 78899999999999999875  337899999999999999887763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.50  E-value=0.00039  Score=56.08  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR  261 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~  261 (379)
                      +..+..+.+..+|+..|.+.  ....++|+|.+ |+++|-|+..+|...-..       -  .++    .      .   
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~-------~--~~~----~------~---   58 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRN--GFRRLPVVDEGTGKLVGIITATDILKYLGG-------G--EKF----N------K---   58 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHc--CcccceeEeCCCCEEEEEEEHHHHHHHhhc-------c--chh----c------c---
Confidence            77889999999999999764  34689999997 999999998887541100       0  000    0      0   


Q ss_pred             HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297          262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA  341 (379)
Q Consensus       262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla  341 (379)
                       .+.   .++..    .         .                       ..+...--...+.+|.+..+|..++..+..
T Consensus        59 -~~~---~~~~~----~---------~-----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~   98 (125)
T cd04631          59 -IKT---GNGLE----A---------I-----------------------NEPVRSIMTRNVITITPDDSIKDAAELMLE   98 (125)
T ss_pred             -ccc---cccch----h---------h-----------------------hcCHHHHhcCCceEeCCCCcHHHHHHHHHH
Confidence             000   00000    0         0                       000000012347899999999999999999


Q ss_pred             cCCcEEEEeeCCCCcccceEee
Q 041297          342 RRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       342 HRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ++.+++=|+|++|.++|+|+..
T Consensus        99 ~~~~~~~V~~~~~~~~Gvit~~  120 (125)
T cd04631          99 KRVGGLPVVDDDGKLVGIVTER  120 (125)
T ss_pred             cCCceEEEEcCCCcEEEEEEHH
Confidence            9999999999989999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.50  E-value=0.00033  Score=55.03  Aligned_cols=106  Identities=21%  Similarity=0.189  Sum_probs=76.3

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+.+..++++.|.+.  ..+.++|++.+|+++|-++..+|...-       ...       ..+           
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~Giv~~~~l~~~~-------~~~-------~~~-----------   55 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEK--NIGAVVVVDDGGRLVGIFSERDIVRKV-------ALR-------GAS-----------   55 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHc--CCCeEEEECCCCCEEEEEehHHHHHHH-------hhc-------CCC-----------
Confidence            77899999999999999764  347899999999999999887774310       000       000           


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             . .          +.     .        .+.--+....++.+..++.+++..+..+
T Consensus        56 -----------------------~-~----------~~-----~--------~~~~~~~~~~~v~~~~~~~~~l~~~~~~   88 (113)
T cd04623          56 -----------------------A-L----------DT-----P--------VSEIMTRNVITVTPDDTVDEAMALMTER   88 (113)
T ss_pred             -----------------------c-c----------cc-----C--------HHHhcCCCcEEECCCCcHHHHHHHHHHc
Confidence                                   0 0          00     0        0000012357899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++.|+|+ |.++|+|+..
T Consensus        89 ~~~~~~Vv~~-~~~~Gvit~~  108 (113)
T cd04623          89 RFRHLPVVDG-GKLVGIVSIG  108 (113)
T ss_pred             CCCEeEEEeC-CEEEEEEEHH
Confidence            9999999998 8999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.50  E-value=0.0004  Score=67.07  Aligned_cols=105  Identities=11%  Similarity=0.081  Sum_probs=80.1

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..|+.+++..+|++.|.+.  ....++|||++|+++|-|+..+|...       +           .+. .+++..   
T Consensus       209 ~~~v~~~~sv~~a~~~~~~~--~~~~~~Vvd~~g~~iG~vt~~dl~~~-------~-----------~~~-~~~~~~---  264 (321)
T PRK11543        209 IPQVALTASVMDAMLELSRT--GLGLVAVCDAQQQVQGVFTDGDLRRW-------L-----------VGG-GALTTP---  264 (321)
T ss_pred             CcEeCCCCCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEecHHHHHHH-------H-----------hCC-CCcCCc---
Confidence            88999999999999999764  44789999999999999998887530       0           000 000000   


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                                       . .|.                  -+..++++.+..+|.+++..+..|
T Consensus       265 ---------------------------------v-~~i------------------m~~~~~~v~~~~~l~~a~~~m~~~  292 (321)
T PRK11543        265 ---------------------------------V-NEA------------------MTRGGTTLQAQSRAIDAKEILMKR  292 (321)
T ss_pred             ---------------------------------H-HHh------------------cCCCCEEECCCCCHHHHHHHHHHc
Confidence                                             0 000                  113468899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ++.++=|||++|.++|+|+.+
T Consensus       293 ~~~~lpVvd~~~~lvGvIt~~  313 (321)
T PRK11543        293 KITAAPVVDENGKLTGAINLQ  313 (321)
T ss_pred             CCCEEEEEcCCCeEEEEEEHH
Confidence            999999999999999999854

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.49  E-value=0.00027  Score=56.61  Aligned_cols=106  Identities=12%  Similarity=0.058  Sum_probs=76.6

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR  261 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~  261 (379)
                      +..++.+++..+|++.|++.  ..+.++|++.+ |+++|-++..+|..       ++           +..+..+.    
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~~G~v~~~dl~~-------~~-----------~~~~~~~~----   58 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEH--GVSSLVVEKRRESDAYGIVTMRDILK-------KV-----------VAEGRDPD----   58 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHc--CCCEEEEEECCCCcEEEEEehHHHHH-------HH-----------HhCCCCCC----
Confidence            78899999999999999764  34789999997 99999998877643       00           00000000    


Q ss_pred             HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297          262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA  341 (379)
Q Consensus       262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla  341 (379)
                                              . .      .. ++.                  -.....++.+..+|.++|..+..
T Consensus        59 ------------------------~-~------~v-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~   88 (114)
T cd04630          59 ------------------------R-V------NV-YEI------------------MTKPLISVSPDMDIKYCARLMER   88 (114)
T ss_pred             ------------------------c-c------CH-HHH------------------hcCCCeeECCCCCHHHHHHHHHH
Confidence                                    0 0      00 000                  01246799999999999999999


Q ss_pred             cCCcEEEEeeCCCCcccceEee
Q 041297          342 RRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       342 HRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ++.+++=|+|+ |.++|+|+.+
T Consensus        89 ~~~~~~~Vvd~-~~~~Gvi~~~  109 (114)
T cd04630          89 TNIRRAPVVEN-NELIGIISLT  109 (114)
T ss_pred             cCCCEeeEeeC-CEEEEEEEHH
Confidence            99999999998 9999999854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.49  E-value=0.00055  Score=54.96  Aligned_cols=106  Identities=15%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      ...+.+++++-+|++.|. ++..+++|++..-.+            +.-.=|+|..|+.. ...        ....+.+ 
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~------------~~~~G~v~~~dl~~-~~~--------~~~~v~~-   61 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG------------GKLLGIVTSRDIDF-LTD--------SETPLSE-   61 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC------------CEEEEEEEhHHhhh-hhc--------cCCCHHH-
Confidence            356789999999999998 577778776642100            00112899999863 211        1223443 


Q ss_pred             ccccCCcEEEEec--CCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHY--DDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~--~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                       +..+. +..+..  +++..++++.|++.  +...+|||+.+|+++|=|+-.++.
T Consensus        62 -~~~~~-~~~~~~~~~~~l~~~l~~~~~~--~~~~~pVv~~~~~~~Gvit~~di~  112 (114)
T cd04602          62 -VMTPR-EVLVVAPTGITLEEANEILRES--KKGKLPIVNDDGELVALVTRSDLK  112 (114)
T ss_pred             -hcCCC-ceEEECCCCCCHHHHHHHHHhc--CCCceeEECCCCeEEEEEEHHHhh
Confidence             34555 666766  99999999999885  447899999999999999988764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.49  E-value=0.00067  Score=55.43  Aligned_cols=119  Identities=17%  Similarity=0.226  Sum_probs=75.8

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+++..+|+++|.+.  ..+.++|++.+|+++|-|+..+|...       +..  . .      .          
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~G~it~~dl~~~-------~~~--~-~------~----------   54 (128)
T cd04632           3 VITVREDDSVGKAINVLREH--GISRLPVVDDNGKLTGIVTRHDIVDF-------VVR--D-R------D----------   54 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHc--CCCEEEEECCCCcEEEEEEHHHHHHH-------Hhh--h-h------h----------
Confidence            77889999999999999875  45899999999999999987776430       000  0 0      0          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                       +...+  +.....+...     . .      .. .+.                  -....++|.+..+|.++|..+...
T Consensus        55 -~~~~~--~~~~~~~~~~-----~-~------~~-~~~------------------~~~~~~~v~~~~~l~~~l~~~~~~  100 (128)
T cd04632          55 -KARTG--DRSGEKERML-----D-L------PV-YDA------------------MSSPVITASPNDSVRDAVDRMLEN  100 (128)
T ss_pred             -hcchh--hhhhhhhhhc-----c-C------cH-HHH------------------hcCCCceECCCCcHHHHHHHHHhC
Confidence             00000  0000000000     0 0      00 000                  113368899999999999999999


Q ss_pred             CCcEEEEee--CCCCcccceEee
Q 041297          343 RDRLRSMAK--AENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd--~e~~l~~~v~~~  363 (379)
                      +.+++=|++  ++|.++|+|+..
T Consensus       101 ~~~~~~V~~~~~~~~~~Gvit~~  123 (128)
T cd04632         101 DDSSVVVVTPDDDTKVVGILTKK  123 (128)
T ss_pred             CCCeEeEeccCCCCcEEEEEEhH
Confidence            987776663  468999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.49  E-value=0.00037  Score=57.23  Aligned_cols=110  Identities=17%  Similarity=0.228  Sum_probs=75.1

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH-----HHhhhcccCCCCCC
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY-----FLNFIGLLNPTPNQ  170 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF-----Ll~~ig~l~p~p~~  170 (379)
                      ...+.+++++-+|++.|. ++.+.++|+++..+-               .=++|..|+.+.     +... +  ...+..
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~---------------~Giv~~~dl~~~~~~~~~~~~-~--~~~~~~   64 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGVRLLLVVDSDDNF---------------IGVITAVDLLGEEPIKRIQEG-G--ISRSEL   64 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcE---------------EEEEEHHHHhhChhhHHHHHc-C--CCchhe
Confidence            467899999999999998 677888887643221               118999999863     2221 0  012234


Q ss_pred             cccccccccCCc-EEEEe----cCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccC
Q 041297          171 PINSHNIIDDAG-ILAIH----YDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLN  228 (379)
Q Consensus       171 SI~sLG~I~~~~-v~aV~----~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~  228 (379)
                      ++.++  .+++- +..++    .++++.++++.|.+.  +...+||||.+ |+++|-|+-.+|.
T Consensus        65 ~v~~i--m~~~~~~~~~~~~~~~~~~l~~~l~~m~~~--~~~~lpVvd~~~~~~~G~it~~di~  124 (126)
T cd04640          65 TVADV--MTPKEDLKALDLEELENASVGDVVETLKAS--GRQHALVVDREHHQIRGIISTSDIA  124 (126)
T ss_pred             EHHHh--cCchhhhccccHHHhccCcHHHHHHHHHHC--CCceEEEEECCCCEEEEEEeHHHHh
Confidence            45543  34330 23333    578988999999876  44789999998 8999999988774

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.46  E-value=0.00032  Score=56.28  Aligned_cols=100  Identities=21%  Similarity=0.226  Sum_probs=75.8

Q ss_pred             ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc----------
Q 041297           16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----------   85 (379)
Q Consensus        16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----------   85 (379)
                      -+++....|+.++++.+.+++...+||.+.                      ++++|+++.-|+.-++..          
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----------------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~   60 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDISRLPVIEG----------------------GKLVGIVTEKDIADALRSFRPLVRDRHQ   60 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeeEEEEC----------------------CEEEEEEchHHHHHhhhhhhhcccchhh
Confidence            356778889999999999888889999872                      369999999998765441          


Q ss_pred             --------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           86 --------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        86 --------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                              +.++..   -....++|+++|.++++.|. .|.+.++|+++ .+-               .=++|+.|+++|
T Consensus        61 ~~~~~~~~~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~---------------~Gvi~~~dl~~~  121 (121)
T cd04633          61 ERRIRNLPVSDIMT---RPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKL---------------VGIVTRTDILRY  121 (121)
T ss_pred             hhhhhccCHHHHcc---CCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEE---------------EEEEEHHHhhcC
Confidence                    222221   23678999999999999998 68888988765 211               128999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.43  E-value=0.00095  Score=52.35  Aligned_cols=103  Identities=22%  Similarity=0.308  Sum_probs=74.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      ...+++++++-++++.|. .+.++++|+++..+               -+=++|.+|+.+.       ..  ...++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~---------------~~G~v~~~~l~~~-------~~--~~~~v~~~   59 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGISGLPVVDDDGK---------------LVGIVTNRDLRFE-------TD--LDKPVSEV   59 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCE---------------EEEEEEhhHeeec-------cc--CCCCHHHh
Confidence            356899999999999998 57888888765311               1127888888532       11  23455554


Q ss_pred             ccccCCcEEEEec-CCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHY-DDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~-~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .++. +..+.. +++..++++.|.+.  +...+|||+.+|+++|-|+..++-
T Consensus        60 --~~~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~dil  108 (110)
T cd04601          60 --MTPE-NLLTTVEGTSLEEALELLHEH--KIEKLPVVDDEGKLKGLITVKDIE  108 (110)
T ss_pred             --cccC-ceEEecCCCCHHHHHHHHHHh--CCCeeeEEcCCCCEEEEEEhhhhh
Confidence              3444 455566 99999999999886  447899999999999999988763

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.42  E-value=0.00054  Score=54.83  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=77.7

Q ss_pred             EeCCCCchhHHHHHHh-cC-ccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297           99 HLKPSASLLEAVDLLL-GG-VQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN  176 (379)
Q Consensus        99 ~V~P~tsLLdAie~m~-~G-~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG  176 (379)
                      .+.|++++-+|++.|. ++ .+.++|+++ .+-               +=+++..|+.+++....+ ....+..++.++ 
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~---------------~G~v~~~~l~~~~~~~~~-~~~~~~~~v~~~-   66 (119)
T cd04598           5 TVSPDTTVNDVLERFERDPDLSALAVVDD-GRP---------------VGLIMREALMELLSTPYG-RALYGKKPVSEV-   66 (119)
T ss_pred             ccCCCCcHHHHHHHHHhCCCccEEEEEEC-Cee---------------EEEEEHHHHHHHHhchhh-HHHHcCCcHHHh-
Confidence            5789999999999997 45 778888766 211               128999999987764310 001134456654 


Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccC-ceeEEEcCCCcEEeeeCcccc
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQ-TSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~-tAVAVVd~dGkLIGeISa~~L  227 (379)
                       .+++ +..++.+++..+|+..|.+..... ...+||+.+|+++|-|+..++
T Consensus        67 -~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di  116 (119)
T cd04598          67 -MDPD-PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDL  116 (119)
T ss_pred             -cCCC-cEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHH
Confidence             5677 899999999999999997642211 234588899999999998775

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.41  E-value=0.00052  Score=53.95  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=78.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      ++.+..+++..+|++.|.+..  .+.+||++. |+++|-++..+|.......              +.      +.+   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~G~v~~~dl~~~~~~~--------------~~------~~~---   56 (111)
T cd04612           3 VVTVPVDLTVDEVLALMFGER--HRGYPVVDD-GRLVGIVTLADIRRVPAEG--------------RE------ATV---   56 (111)
T ss_pred             CEEeCCCCcHHHHHHHHHHcC--CCcceEeeC-CeEEEEEEHHHHHHHHhcC--------------cc------ccc---
Confidence            778999999999999997653  478999998 9999999988875422100              00      000   


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                               .                          ....-.....++.+..++..++.++..+
T Consensus        57 -------------------------~--------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~   85 (111)
T cd04612          57 -------------------------L--------------------------VGDVMTRDPVTASPDETLRDALKRMAER   85 (111)
T ss_pred             -------------------------C--------------------------HHHhccCCCeEECCCCCHHHHHHHHHhC
Confidence                                     0                          0000123368899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|.+|.+.|+|+..
T Consensus        86 ~~~~~~V~~~~~~~~G~it~~  106 (111)
T cd04612          86 DIGRLPVVDDSGRLVGIVSRS  106 (111)
T ss_pred             CCCeeeEEcCCCCEEEEEEHH
Confidence            999999999999999999854

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.41  E-value=0.00077  Score=53.45  Aligned_cols=106  Identities=15%  Similarity=0.081  Sum_probs=77.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      .+.+..+++..+|++.|.+.  +...++|+|.+|+++|-++..+|.....+          +++.   .           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vvd~~~~~~G~v~~~dl~~~~~~----------~~~~---~-----------   56 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTS--GSRALPVVDDKKRLVGIITRYDVLSYALE----------SEEL---K-----------   56 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHc--CCceEeEEcCCCCEEEEEEHHHHHHhhhh----------hhhh---c-----------
Confidence            46788999999999999765  34789999999999999988777431000          0000   0           


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             . .      .. .+.                  -...+.++.+..++.+++.++..+
T Consensus        57 -----------------------~-~------~i-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~   87 (113)
T cd04615          57 -----------------------D-A------KV-REV------------------MNSPVITIDANDSIAKARWLMSNN   87 (113)
T ss_pred             -----------------------C-C------cH-HHh------------------ccCCceEECCCCcHHHHHHHHHHc
Confidence                                   0 0      00 000                  012467889999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+|+.+
T Consensus        88 ~~~~~~Vvd~~g~~~Gvvt~~  108 (113)
T cd04615          88 NISRLPVLDDKGKVGGIVTED  108 (113)
T ss_pred             CCCeeeEECCCCeEEEEEEHH
Confidence            999999999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.41  E-value=0.00051  Score=57.12  Aligned_cols=110  Identities=13%  Similarity=0.207  Sum_probs=80.5

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|+.++-+|++.|. +++++++|++...+-               +=++|..|+++.+.+...    -+..+++++
T Consensus         4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~---------------~Gii~~~dl~~~~~~~~~----~~~~~v~~i   64 (124)
T cd04608           4 PVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKI---------------LGMVTLGNLLSSLSSGKV----QPSDPVSKA   64 (124)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCE---------------EEEEEHHHHHHHHHHhcc----CCCCcHHHH
Confidence            467899999999999998 578888887643211               128999999998876322    123455553


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhc-------cccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQS-------HIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a-------~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..+.++++..++.++|..-       -....+++|++.+|+++|=|+..||-
T Consensus        65 --m~~~-~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~  121 (124)
T cd04608          65 --LYKQ-FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLL  121 (124)
T ss_pred             --hhcc-ceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhh
Confidence              3666 89999999999998865321       11346788899889999999988873

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.39  E-value=0.0006  Score=54.04  Aligned_cols=100  Identities=14%  Similarity=0.131  Sum_probs=75.1

Q ss_pred             ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------cc
Q 041297           16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------CF   87 (379)
Q Consensus        16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------VS   87 (379)
                      -+++....|+++|++.+.+.+...++|-+.                      .+++|+|+.-|++..+.+        +.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~G~v~~~~l~~~~~~~~~~~~~~i~   60 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVRDG----------------------DPRLGIVTRTDLLDAVLLDGLPSSTPVG   60 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEecC----------------------CeEEEEEEHHHHHHHHHcCCCCCCCCHH
Confidence            356778889999999998888778888652                      358999999998865431        33


Q ss_pred             ccccCCCCceEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           88 CSFAKDSGIVRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        88 ~li~~~~gll~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                      ++..   -.+..+.|++++.|+++.|.+ +.+.++|++.+  +        ...      ++|+.|+++|
T Consensus        61 ~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--~--------~~G------~it~~dl~~~  111 (111)
T cd04589          61 EIAT---FPLITVDPDDFLFNALLLMTRHRIHRVVVREGG--E--------VVG------VLEQTDLLSF  111 (111)
T ss_pred             HHhC---CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCC--E--------EEE------EEEhHHhhcC
Confidence            3332   236689999999999999994 88888887641  1        111      8999999987

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.39  E-value=0.00039  Score=69.67  Aligned_cols=112  Identities=23%  Similarity=0.305  Sum_probs=83.8

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh-hhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN-FIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~-~ig~l~p~p~~SI~s  174 (379)
                      |.++.+.|++-+|-.++. .+++-|.|++.+.|-++               ..||.|.....-- -..-|...+..++  
T Consensus       255 Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~G---------------iVt~~dl~~~a~~~p~qrlr~~~~~~v--  317 (382)
T COG3448         255 VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVG---------------IVTQRDLLKHARPSPFQRLRFLRPPTV--  317 (382)
T ss_pred             ceecCCcCChHHHHHHHHHcCcccccccccccceee---------------eeeHHHHhhccCcchHHHhhccCCCcc--
Confidence            789999999999999999 69999999887655422               6788887762211 0111112222222  


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      =|++++. +..|.+++|+.+.++.+...  ...++||+|++||++|=||-+||-
T Consensus       318 k~imt~~-v~tv~pdtpa~~lvp~lad~--g~H~lpvld~~g~lvGIvsQtDli  368 (382)
T COG3448         318 KGIMTTP-VVTVRPDTPAVELVPRLADE--GLHALPVLDAAGKLVGIVSQTDLI  368 (382)
T ss_pred             cccccCc-ceeecCCCcHHHHHHHhhcC--CcceeeEEcCCCcEEEEeeHHHHH
Confidence            2567888 99999999999998888664  337999999999999999998873

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.39  E-value=0.00093  Score=52.13  Aligned_cols=98  Identities=19%  Similarity=0.171  Sum_probs=73.9

Q ss_pred             cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--ccccccCCC
Q 041297           17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCSFAKDS   94 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~li~~~~   94 (379)
                      +.+....++.++++.+++.+...+||.+ +                     .+++|+|+.-|++.+...  +.+++.   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~---------------------~~~~Giv~~~~l~~~~~~~~~~~~~~---   58 (105)
T cd04599           4 ITIDPLDSVGRAARLMEKHRIGGLPVVE-D---------------------GKLVGIITSRDVRRAHPNRLVADAMT---   58 (105)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEEE-C---------------------CEEEEEEehHHhhcccccCCHHHHcc---
Confidence            4566788999999999888888899886 2                     368999999998764322  444442   


Q ss_pred             CceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH
Q 041297           95 GIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR  155 (379)
Q Consensus        95 gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR  155 (379)
                      .....+++++++-++++.|. +|...++|+++ .+-               .=++|+.||++
T Consensus        59 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~---------------~G~it~~~l~~  104 (105)
T cd04599          59 REVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKL---------------VGIITKGTIAL  104 (105)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEE---------------EEEEEHHHhcc
Confidence            24778999999999999998 79988888765 111               11888888863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.38  E-value=0.0012  Score=52.10  Aligned_cols=104  Identities=18%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..|..+++..+|++.|.+.  ....+||++.+|+++|-++..+|..+-       +.   .      +.          
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~--~~~~~~V~~~~~~~~G~v~~~~l~~~~-------~~---~------~~----------   54 (111)
T cd04639           3 FETLSPADTLDDAADALLAT--TQHEFPVVDGDGHLVGLLTRDDLIRAL-------AE---G------GP----------   54 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHc--CCCcceEECCCCcEEEEeeHHHHHHHH-------Hh---c------CC----------
Confidence            77899999999999998763  347899999999999999877664310       00   0      00          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                         .   ++.         .+.                  -.....++.+.+++.+++..+..|
T Consensus        55 -------------------~---~~v---------~~~------------------~~~~~~~i~~~~~~~~~~~~~~~~   85 (111)
T cd04639          55 -------------------D---APV---------RGV------------------MRRDFPTVSPSATLDAVLRLMQQG   85 (111)
T ss_pred             -------------------C---CcH---------HHH------------------hcCCCcEECCCCcHHHHHHHHHhc
Confidence                               0   000         000                  012357899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+++..
T Consensus        86 ~~~~~~Vv~~~~~~~G~it~~  106 (111)
T cd04639          86 GAPAVPVVDGSGRLVGLVTLE  106 (111)
T ss_pred             CCceeeEEcCCCCEEEEEEHH
Confidence            999999999989999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.36  E-value=0.00037  Score=55.77  Aligned_cols=106  Identities=20%  Similarity=0.185  Sum_probs=77.8

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+++..+|++.|++.  ....++|+|.+|+++|-++..+|.....                  ..          
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~G~v~~~dl~~~~~------------------~~----------   52 (115)
T cd04593           3 PPVLSATTPLREAAEQLIES--KHGSALVVDRDGGVVGIITLPDLLRALE------------------AD----------   52 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhC--CCcEEEEEcCCCCEEEEEEHHHHHHHHh------------------cc----------
Confidence            66788999999999999764  3478899999999999998777754110                  00          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                         .   . .+   .... .+                  -......+|.+..+|.++|..+..|
T Consensus        53 -------------------~---~-~~---~~~~-~~------------------~~~~~~~~v~~~~~l~~~l~~~~~~   87 (115)
T cd04593          53 -------------------E---A-GE---PSAV-DE------------------VATPPLLTVHPDEPLAHALDRMASR   87 (115)
T ss_pred             -------------------c---c-cc---cccH-HH------------------hccCCceEECCCCCHHHHHHHHHHc
Confidence                               0   0 00   0000 00                  0123468899999999999999999


Q ss_pred             CCcEEEEeeCC--CCcccceEee
Q 041297          343 RDRLRSMAKAE--NPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e--~~l~~~v~~~  363 (379)
                      +.+++=|+|++  |.++|+|+..
T Consensus        88 ~~~~~~Vvd~~~~~~~~Gvit~~  110 (115)
T cd04593          88 GLRQLPVVDRGNPGQVLGLLTRE  110 (115)
T ss_pred             CCceeeEEeCCCCCeEEEEEEhH
Confidence            99999999998  8999999853

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.00094  Score=54.86  Aligned_cols=45  Identities=20%  Similarity=0.295  Sum_probs=38.9

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      +..++.+++..+|++.|++.  ....++|++.+|+++|-++..+|..
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~--~~~~~~V~d~~~~~~Giv~~~dl~~   47 (126)
T cd04640           3 PIVIPADTSIDEALELMIKH--GVRLLLVVDSDDNFIGVITAVDLLG   47 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHc--CCcEEEEEcCCCcEEEEEEHHHHhh
Confidence            67899999999999999764  4478999999999999999888864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.34  E-value=0.0009  Score=69.85  Aligned_cols=176  Identities=15%  Similarity=0.128  Sum_probs=112.3

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      +-+++....|+.+|++.+.+.+...+||-+.                     .++++|+|+.-||.-++.+         
T Consensus        77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---------------------~g~l~Givt~~di~~~~~~~~~~~~~~~  135 (546)
T PRK14869         77 KPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---------------------EGKLLGLVSLSDLARAYMDILDPEILSK  135 (546)
T ss_pred             CCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---------------------CCEEEEEEEHHHHHHHHHhhcchhhhhh
Confidence            4577888999999999999999999999873                     2469999999999875542         


Q ss_pred             ----cccccc--------------------------------CC-CCceEEeCCCCchhHHHHHHhcCccEEEEecC-Cc
Q 041297           86 ----CFCSFA--------------------------------KD-SGIVRHLKPSASLLEAVDLLLGGVQNLVILPA-GI  127 (379)
Q Consensus        86 ----VS~li~--------------------------------~~-~gll~~V~P~tsLLdAie~m~~G~~rllVi~s-~~  127 (379)
                          +..|+.                                +. +|-++.+......+.  .++.+|+..++|-.. ..
T Consensus       136 ~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~--~ai~~~~~~lIlt~g~~~  213 (546)
T PRK14869        136 SPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQL--AAIEAGVRLLIITGGAPV  213 (546)
T ss_pred             cCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHH--HHHHcCCCEEEECCCCCC
Confidence                111111                                00 122222222222222  123355555555211 10


Q ss_pred             -ccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccccccc-CCcEEEEecCCchhcHHHHHHhcccc
Q 041297          128 -KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIID-DAGILAIHYDDPAAFAIPLIAQSHIK  205 (379)
Q Consensus       128 -k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~  205 (379)
                       +.+     -+......--.+.|+.|..+-...--.      +.+|.++  .+ ++ +..++.+++..+|.+.|.+.  +
T Consensus       214 ~~~v-----~~la~~~~i~ii~t~~dt~~t~~~l~~------~~~V~~i--M~~~~-~~~~~~~~~~~~~~~~m~~~--~  277 (546)
T PRK14869        214 SEDV-----LELAKENGVTVISTPYDTFTTARLINQ------SIPVSYI--MTTED-LVTFSKDDYLEDVKEVMLKS--R  277 (546)
T ss_pred             CHHH-----HHHHHhCCCeEEEecccHHHHHHHhhc------CCCHHHh--ccCCC-cEEECCCCcHHHHHHHHHhc--C
Confidence             000     011112233447788887766544211      3445554  45 66 99999999999999999876  4


Q ss_pred             CceeEEEcCCCcEEeeeCccccCC
Q 041297          206 QTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       206 ~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ...+||||.+|+++|-|+..+|..
T Consensus       278 ~~~~PVvd~~g~lvGiit~~dl~~  301 (546)
T PRK14869        278 YRSYPVVDEDGKVVGVISRYHLLS  301 (546)
T ss_pred             CCceEEEcCCCCEEEEEEHHHhhc
Confidence            488999999999999999999865

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.33  E-value=0.0019  Score=50.54  Aligned_cols=99  Identities=16%  Similarity=0.207  Sum_probs=76.4

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+.+..+|++.|.+.  ....++|+|. |+++|-++..+|......       .++.++                
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~-~~~~g~v~~~~l~~~~~~-------~~~~~~----------------   57 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKET--GHDGFPVVDN-GKVVGIVSARDLLGKDPD-------ETVEEI----------------   57 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHc--CCCeeeEeEC-CEEEEEEEHHHhhccCcc-------ccHHHh----------------
Confidence            78899999999999999764  2367999987 999999998888642100       000000                


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                                                              -...+.++.+..+|.+++..+..|
T Consensus        58 --------------------------------------------------------~~~~~~~v~~~~~l~~~~~~~~~~   81 (107)
T cd04610          58 --------------------------------------------------------MSKDLVVAVPEMDIMDAARVMFRT   81 (107)
T ss_pred             --------------------------------------------------------CCCCCeEECCCCCHHHHHHHHHHh
Confidence                                                                    012257788999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+++..
T Consensus        82 ~~~~~~Vv~~~g~~~Gvi~~~  102 (107)
T cd04610          82 GISKLPVVDENNNLVGIITNT  102 (107)
T ss_pred             CCCeEeEECCCCeEEEEEEHH
Confidence            999999999999999999854

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.33  E-value=0.00077  Score=51.62  Aligned_cols=105  Identities=21%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--cccc--cc
Q 041297           16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCS--FA   91 (379)
Q Consensus        16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~l--i~   91 (379)
                      -+.+....+++++++.+...+...+||.+..                     .+++|.++.-|++.++..  ....  +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~   61 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDD---------------------GRLVGIVTERDLLRALAEGGLDPLVTVG   61 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCCceEEEECCC---------------------CCEEEEEeHHHHHHHHHhccCCccccHH
Confidence            3567788999999999998888899998832                     469999999999988874  1110  11


Q ss_pred             C-CCCceEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           92 K-DSGIVRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        92 ~-~~gll~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                      . .......+.+++++.++++.|.+ +.+.++|++...+-.               =++|+.|+++|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---------------G~i~~~dl~~~  113 (113)
T cd02205          62 DVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLV---------------GIVTRSDILRA  113 (113)
T ss_pred             HHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEE---------------EEEEHHHhhcC
Confidence            1 12346778899999999999995 688888876542211               18888888764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.32  E-value=0.00059  Score=53.89  Aligned_cols=106  Identities=16%  Similarity=0.106  Sum_probs=76.6

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..++++.|.+.  ..+.++|++.+|+++|-++..++..+-..           ++    +           
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~~i~~~~~~-----------~~----~-----------   55 (114)
T cd04604           4 LPLVSPDTSLKDALLEMSRK--GLGMTAVVDEDGRLVGIFTDGDLRRALEK-----------GL----D-----------   55 (114)
T ss_pred             ccccCCCCcHHHHHHHHHhc--CccEEEEEcCCCCEEEEechHHHHHHHhc-----------cC----c-----------
Confidence            66788899999999998654  34789999999999999987766541100           00    0           


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                               .   ..... .+.                  -.....++.+..++.+++..+..+
T Consensus        56 -------------------------~---~~~~v-~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~   88 (114)
T cd04604          56 -------------------------I---LTLPV-ADV------------------MTRNPKTIDPDALAAEALELMEEN   88 (114)
T ss_pred             -------------------------c---ccCCH-HHh------------------hccCCeEECCCCcHHHHHHHHHHc
Confidence                                     0   00000 000                  112356899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|.+|.++|+|+.+
T Consensus        89 ~~~~~~Vv~~~~~~iG~it~~  109 (114)
T cd04604          89 KITALPVVDDNGRPVGVLHIH  109 (114)
T ss_pred             CCCEEEEECCCCCEEEEEEHH
Confidence            999999999999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.29  E-value=0.0016  Score=53.95  Aligned_cols=126  Identities=16%  Similarity=0.145  Sum_probs=78.7

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|++.|.+.  ....++|+|.+|+++|-|+..+|...-.           ..+.   .   +..   ++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~--~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~-----------~~~~---~---~~~---~~   61 (135)
T cd04586           4 VVTVSPETSVAEAARLMLDN--HISGLPVVDDDGRLVGIVSEGDLLRRAE-----------LGTE---R---RRA---RW   61 (135)
T ss_pred             CEEeCCCCCHHHHHHHHHHc--CCCCceEECCCCCEEEEeeHHHHHHHhc-----------ccCc---c---hhh---hH
Confidence            78899999999999999764  3468999999999999999888753100           0000   0   000   00


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                      ..-+.......  .......     .               . .        ...--...+.++.+++++..++..+..+
T Consensus        62 ~~~~~~~~~~~--~~~~~~~-----~---------------~-~--------v~~~~~~~~~~v~~~~~~~~~~~~~~~~  110 (135)
T cd04586          62 LDLLAGAEELA--AAFVRSH-----G---------------R-K--------VADVMTRPVVTVGEDTPLAEVAELMEEH  110 (135)
T ss_pred             HHHhcchHHHH--HHHHHhc-----C---------------C-C--------HHHHhCCCceEeCCCCcHHHHHHHHHHc
Confidence            00000000000  0000000     0               0 0        0000112468899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEe
Q 041297          343 RDRLRSMAKAENPNFCPVRI  362 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~  362 (379)
                      +.+++=|+| +|.++|+++.
T Consensus       111 ~~~~l~Vvd-~g~~~Gvit~  129 (135)
T cd04586         111 RIKRVPVVR-GGRLVGIVSR  129 (135)
T ss_pred             CCCccCEec-CCEEEEEEEh
Confidence            999999999 8999999975

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.28  E-value=0.00067  Score=53.04  Aligned_cols=101  Identities=19%  Similarity=0.269  Sum_probs=73.8

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------c
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------C   86 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------V   86 (379)
                      +-+++....|+.+|++.+.+.+...+||-+.                      .+++|+|+.-|+...+..        +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~G~v~~~dl~~~~~~~~~~~~~~~   59 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----------------------GRVVGSIDESDLLDALIEGKAKFSLPV   59 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----------------------CeeEEEEeHHHHHHHHhccccccCcCH
Confidence            3467788899999999999888878888652                      358999999998886542        3


Q ss_pred             cccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           87 FCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        87 S~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                      .++..   ..+..++++++|.+++++|.+. +.++|++...+-         .      =++|++||++|
T Consensus        60 ~~~~~---~~~~~v~~~~~l~~~~~~~~~~-~~~~vv~~~~~~---------~------Gvvt~~di~~~  110 (110)
T cd04609          60 REVMG---EPLPTVDPDAPIEELSELLDRG-NVAVVVDEGGKF---------V------GIITRADLLKY  110 (110)
T ss_pred             HHHhc---CCCceeCCCCcHHHHHHHHHhC-CceeEEecCCeE---------E------EEEeHHHhhcC
Confidence            33333   2356799999999999999984 345555432111         1      19999999987

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.25  E-value=0.0015  Score=51.97  Aligned_cols=41  Identities=7%  Similarity=-0.152  Sum_probs=38.1

Q ss_pred             ceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          323 AIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       323 ~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.++.+..++.+++..+..++.+++=|+|++|...|+|+.+
T Consensus        63 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~  103 (109)
T cd04606          63 VISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVD  103 (109)
T ss_pred             CeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhH
Confidence            68899999999999999999999999999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.25  E-value=0.00091  Score=70.42  Aligned_cols=104  Identities=13%  Similarity=0.124  Sum_probs=79.9

Q ss_pred             EEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHH
Q 041297          184 LAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLV  260 (379)
Q Consensus       184 ~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~  260 (379)
                      ..|++++++.+|++.|.+.  ....+||||.   +|+|+|-|+..||+.-.             +     +...|.++  
T Consensus       108 ~tV~pd~tl~eAl~~m~~~--~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-------------~-----~~~~~V~d--  165 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKT--GHSTVAVTEDGTAHGKLLGIVTSRDYRISR-------------M-----SLDTKVKD--  165 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhc--CCCeEEEEeCCCcCCEEEEEEEcHHhhccc-------------c-----CCCCCHHH--
Confidence            4789999999999999875  4589999997   68999999988885300             0     00000000  


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHH
Q 041297          261 RLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQAL  340 (379)
Q Consensus       261 ~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAl  340 (379)
                                       .|                                      .....++++++..+|.+++..|.
T Consensus       166 -----------------IM--------------------------------------t~~~~~itv~~d~~l~eAl~lM~  190 (502)
T PRK07107        166 -----------------FM--------------------------------------TPFEKLVTANEGTTLKEANDIIW  190 (502)
T ss_pred             -----------------Hh--------------------------------------CCCCCeEEECCCCcHHHHHHHHH
Confidence                             01                                      11234789999999999999999


Q ss_pred             HcCCcEEEEeeCCCCcccceEeeh
Q 041297          341 ARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       341 aHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .|+++++=|+|++|.++|+|+.+-
T Consensus       191 e~~i~~LPVVD~~g~LvGIIT~~D  214 (502)
T PRK07107        191 DHKLNTLPIVDKNGNLVYLVFRKD  214 (502)
T ss_pred             HcCCCEEEEEcCCCeEEEEEEhHH
Confidence            999999999999999999998753

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.24  E-value=0.00081  Score=70.81  Aligned_cols=124  Identities=12%  Similarity=0.090  Sum_probs=88.4

Q ss_pred             CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      ...++++  +.+++ +..++.+++..+|++.|++.  +...++|+|++|+++|-++..||..-       +         
T Consensus       445 ~~~~V~d--im~~~-~~~v~~~~tl~ea~~~l~~~--~~~~~~VvD~~g~lvGiVt~~dL~~~-------l---------  503 (574)
T PRK01862        445 RTTQMRE--LIQPA-QTVVPPTASVADMTRVFLEY--PVKYLYVVDDDGRFRGAVALKDITSD-------L---------  503 (574)
T ss_pred             hhCcHHH--HhcCC-CceeCCCCCHHHHHHHHHhC--CCceEEEEcCCCeEEEEEEHHHHHHH-------h---------
Confidence            3456666  45677 88899999999999999874  45789999999999999988877540       0         


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                        .+..                          +..+  . .       . +|.                  -...+.+++
T Consensus       504 --~~~~--------------------------~~~~--~-~-------v-~di------------------m~~~~~~v~  526 (574)
T PRK01862        504 --LDKR--------------------------DTTD--K-T-------A-ADY------------------AHTPFPLLT  526 (574)
T ss_pred             --hccc--------------------------cccc--c-h-------H-HHh------------------ccCCCeeEC
Confidence              0000                          0000  0 0       0 000                  113357899


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCC--CCcccceEeehhhHHH
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAE--NPNFCPVRIQAKKQQL  369 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e--~~l~~~v~~~~~~~~~  369 (379)
                      +..+|.+++.++..|+.+++=|+|++  +.++|+|+-+.-.+.+
T Consensus       527 ~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        527 PDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             CCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            99999999999999999999999987  4799999865544444

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.24  E-value=0.0017  Score=51.39  Aligned_cols=104  Identities=11%  Similarity=0.045  Sum_probs=77.5

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|++.|.+.  ..+.++|++.+|+++|-++..+|..+...          ...   .+.  |       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~dl~~~~~~----------~~~---~~~--~-------   58 (111)
T cd04626           3 FPTIDEDASIREALHEMLKY--NTNEIIVKDNEEKLKGVVTFTDILDLDLF----------ESF---LEK--K-------   58 (111)
T ss_pred             ceEECCCccHHHHHHHHHHh--CCCeEEEEcCCCCEEEEEehHHhHHHHhh----------ccc---ccC--c-------
Confidence            77899999999999999764  45789999999999999988877542110          000   000  0       


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                               -         .+.                  -.....++.+..+|.+++..+..|
T Consensus        59 -------------------------v---------~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~   86 (111)
T cd04626          59 -------------------------V---------FNI------------------VSQDVFYVNEEDTIDEALDIMREK   86 (111)
T ss_pred             -------------------------H---------HHH------------------hcCCcEEEcCCCcHHHHHHHHHHc
Confidence                                     0         000                  113357899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ...++=|+|+ |.++|+|+.+
T Consensus        87 ~~~~~~Vv~~-~~~~G~it~~  106 (111)
T cd04626          87 QIGRLPVVDD-NKLIGVVRTK  106 (111)
T ss_pred             CCCeeeEeEC-CEEEEEEEhH
Confidence            9999999998 8999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.24  E-value=0.0027  Score=49.71  Aligned_cols=101  Identities=23%  Similarity=0.234  Sum_probs=77.6

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+++..+|+..|.+.  ....++|+|.+|+++|-++..+|..+.                   +.+.|.++    
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~dl~~~~-------------------~~~~~v~~----   58 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDK--KVDSLLVVDKDNKLLGIVSLESLEQAY-------------------KEAKSLED----   58 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHC--CCceEEEEcCCCcEEEEEEHHHHHHHh-------------------hcCCcHhH----
Confidence            67789999999999999764  447899999999999999988875521                   00000000    


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                               .                              -.....++.+..++.+++..+..+
T Consensus        59 -------------------------~------------------------------~~~~~~~v~~~~~~~~~~~~~~~~   83 (109)
T cd04583          59 -------------------------I------------------------------MLEDVFTVQPDASLRDVLGLVLKR   83 (109)
T ss_pred             -------------------------h------------------------------hcCCceEECCCCcHHHHHHHHHHc
Confidence                                     0                              012357889999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+|+.+
T Consensus        84 ~~~~~~vv~~~g~~~Gvit~~  104 (109)
T cd04583          84 GPKYVPVVDEDGKLVGLITRS  104 (109)
T ss_pred             CCceeeEECCCCeEEEEEehH
Confidence            999999999999999999754

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.23  E-value=0.0012  Score=68.74  Aligned_cols=105  Identities=18%  Similarity=0.210  Sum_probs=82.9

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL  259 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l  259 (379)
                      ++ +..++.+++..+|+++|++.  ..+.+||||.+|+++|-++..||....                   +...|.+  
T Consensus        95 ~~-~v~i~~~~tv~ea~~~m~~~--~~~~lpVvd~~g~lvGiVt~~DL~~~~-------------------~~~~~V~--  150 (486)
T PRK05567         95 TD-PVTVTPDTTLAEALALMARY--GISGVPVVDENGKLVGIITNRDVRFET-------------------DLSQPVS--  150 (486)
T ss_pred             CC-CeEeCCCCCHHHHHHHHHHh--CCCEEEEEccCCEEEEEEEHHHhhhcc-------------------cCCCcHH--
Confidence            56 88999999999999999875  458999999999999999988874310                   0000000  


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297          260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA  339 (379)
Q Consensus       260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA  339 (379)
                                                             +.                 -.+..+++|.+..||.+++..+
T Consensus       151 ---------------------------------------di-----------------m~~~~~v~v~~~~sl~eal~~m  174 (486)
T PRK05567        151 ---------------------------------------EV-----------------MTKERLVTVPEGTTLEEALELL  174 (486)
T ss_pred             ---------------------------------------HH-----------------cCCCCCEEECCCCCHHHHHHHH
Confidence                                                   00                 0123578999999999999999


Q ss_pred             HHcCCcEEEEeeCCCCcccceEeeh
Q 041297          340 LARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       340 laHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      ..|+++++-|+|++|.++|+|+...
T Consensus       175 ~~~~~~~lpVVDe~g~lvGiIT~~D  199 (486)
T PRK05567        175 HEHRIEKLPVVDDNGRLKGLITVKD  199 (486)
T ss_pred             HHcCCCEEEEEcCCCcEEEEEEhHH
Confidence            9999999999999999999998653

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.22  E-value=0.00094  Score=65.36  Aligned_cols=108  Identities=13%  Similarity=0.048  Sum_probs=84.3

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFC   88 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~   88 (379)
                      +-.++....|++++++.+.+++...+||.+.+                    ..+++|+|..-|++.++..      +.+
T Consensus        78 ~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~--------------------~d~iiGiv~~kDll~~~~~~~~~~~l~~  137 (292)
T PRK15094         78 QMITLKRNQTLDECLDVIIESAHSRFPVISED--------------------KDHIEGILMAKDLLPFMRSDAEAFSMDK  137 (292)
T ss_pred             HEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC--------------------CCcEEEEEEHHHHHhHhhccCCcCCHHH
Confidence            55678889999999999999999999998732                    2469999999999876542      334


Q ss_pred             cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297           89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI  161 (379)
Q Consensus        89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i  161 (379)
                      +..   . ...|.++++|.++++.|. ++.|.++|+++...-         ..      ++|.+||++.|.+-|
T Consensus       138 l~r---~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~v---------iG------iVTleDIle~ivGei  192 (292)
T PRK15094        138 VLR---Q-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGV---------SG------LVTIEDILELIVGEI  192 (292)
T ss_pred             HcC---C-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCE---------EE------EeEHHHHHHHHhCCC
Confidence            432   2 237999999999999999 678888888752211         11      999999999999865

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.21  E-value=0.003  Score=64.54  Aligned_cols=142  Identities=12%  Similarity=0.028  Sum_probs=102.3

Q ss_pred             ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc----cccc
Q 041297           14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----CFCS   89 (379)
Q Consensus        14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----VS~l   89 (379)
                      -|=++++...|++++++.+++++.+-+||++-+                    ..+++|+|..-|++.++.+    +.++
T Consensus       201 ~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--------------------~d~ivGiv~~kDll~~~~~~~~~l~~~  260 (408)
T TIGR03520       201 LDIFALDIETSFSEIIPKIIENGYSRIPVYKET--------------------IDNITGVLYIKDLLPHLNKKNFDWQSL  260 (408)
T ss_pred             HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--------------------CCceEEEEEHHHHHhHhccCCCCHHHH
Confidence            455678888999999999999999999998732                    2469999999999877653    3333


Q ss_pred             ccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-ccCCC
Q 041297           90 FAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-LLNPT  167 (379)
Q Consensus        90 i~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~l~p~  167 (379)
                      +.    ....|.+++++.++++.|. ++.|.++|+++...-         ..      .+|.|||++.+.+-|. +..+ 
T Consensus       261 ~~----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~---------~G------iVT~eDileeivgei~de~d~-  320 (408)
T TIGR03520       261 LR----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGT---------SG------LVTLEDIIEEIVGDISDEFDD-  320 (408)
T ss_pred             cC----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCE---------EE------EEEHHHHHHHHhCCCCCcCCc-
Confidence            32    2578999999999999999 567888888753211         11      9999999999988654 2221 


Q ss_pred             CCCcccccccccCCcEEEEecCCchhcHHHHH
Q 041297          168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLI  199 (379)
Q Consensus       168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm  199 (379)
                      ....+..   ++++ .+-|+...+.-+.-+.|
T Consensus       321 ~~~~i~~---~~~~-~~~v~G~~~l~~l~~~l  348 (408)
T TIGR03520       321 EDLIYSK---IDDN-NYVFEGKTSLKDFYKIL  348 (408)
T ss_pred             CccceEE---eCCC-eEEEEeccCHHHHHHHh
Confidence            1111222   3345 78888888876655555

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.19  E-value=0.0023  Score=50.56  Aligned_cols=106  Identities=10%  Similarity=0.132  Sum_probs=76.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+++..+|++.|.+.  ....++|++. |+++|-++..+|..       ...+   .++    +    ++     
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~-~~~~G~v~~~dl~~-------~~~~---~~~----~----~~-----   56 (113)
T cd04587           3 PATVSPTTTVQEAAKLMREK--RVSCVLVMDG-NKLVGIFTSKDIAL-------RVVA---QGL----D----PE-----   56 (113)
T ss_pred             CeEeCCCCCHHHHHHHHHHc--CCCeEEEEEC-CEEEEEEEhHHHHH-------HHHh---cCC----C----cC-----
Confidence            77899999999999998654  3468999997 99999998888742       0000   000    0    00     


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                         .   . .       . .+.                  -...+.++.+..+|..+|..+..+
T Consensus        57 -------------------~---~-~-------v-~~i------------------~~~~~~~v~~~~~l~~~~~~~~~~   87 (113)
T cd04587          57 -------------------S---T-L-------V-ERV------------------MTPNPVCATSDTPVLEALHLMVQG   87 (113)
T ss_pred             -------------------c---C-C-------H-HHh------------------cCCCCeEEcCCCCHHHHHHHHHHc
Confidence                               0   0 0       0 000                  112357899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+|+.+
T Consensus        88 ~~~~l~Vv~~~~~~~Gvvs~~  108 (113)
T cd04587          88 KFRHLPVVDKSGQVVGLLDVT  108 (113)
T ss_pred             CCCcccEECCCCCEEEEEEHH
Confidence            999999999999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.18  E-value=0.002  Score=67.60  Aligned_cols=105  Identities=19%  Similarity=0.223  Sum_probs=83.6

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      +.++ +..+..+++..+|+++|++.  ..+.++|||.+|+++|-++..||...+.                    ..|.+
T Consensus        95 Mi~~-pvtv~~d~tv~eA~~~m~~~--~~s~l~VVD~~gklvGIVT~rDL~~~~~--------------------~~~V~  151 (479)
T PRK07807         95 VFDT-PVTLSPDDTVGDALALLPKR--AHGAVVVVDEEGRPVGVVTEADCAGVDR--------------------FTQVR  151 (479)
T ss_pred             cccC-CeEECCCCCHHHHHHHHHhc--CCceEEEECCCCeEEEEEeHHHHhcCcc--------------------CCCHH
Confidence            4566 78999999999999999875  4589999999999999999888854210                    00000


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                      ++                                                           -+..+++..+..+|.+++.
T Consensus       152 di-----------------------------------------------------------Mt~~~itV~~d~sL~eAl~  172 (479)
T PRK07807        152 DV-----------------------------------------------------------MSTDLVTLPAGTDPREAFD  172 (479)
T ss_pred             Hh-----------------------------------------------------------ccCCceEECCCCcHHHHHH
Confidence            00                                                           0134688999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .+..|+.+++=|+|++|.++|+|+.+-
T Consensus       173 lM~~~~i~~LPVVD~~g~lvGIIT~~D  199 (479)
T PRK07807        173 LLEAARVKLAPVVDADGRLVGVLTRTG  199 (479)
T ss_pred             HHHhcCCCEEEEEcCCCeEEEEEEHHH
Confidence            999999999999999999999998653

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.17  E-value=0.0016  Score=55.06  Aligned_cols=100  Identities=11%  Similarity=0.147  Sum_probs=75.5

Q ss_pred             cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----------
Q 041297           17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----------   85 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----------   85 (379)
                      .++....|+.+|++.+.+++...+||=+-                     .++++|+|+.-|++.++..           
T Consensus         4 ~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---------------------~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~   62 (135)
T cd04621           4 ATVHPEHSLLHVVDEMEKNGVGRVIVVDD---------------------NGKPVGVITYRDLAFAEFEDNERGLPKKSI   62 (135)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCCcceEECC---------------------CCCEEEEEeHHHHHHHhhcccccccchhhh
Confidence            45677889999999999988888888863                     2579999999998876531           


Q ss_pred             --------------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcc
Q 041297           86 --------------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSE  144 (379)
Q Consensus        86 --------------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~  144 (379)
                                          |+++..   ..+..++|++++.++++.|. ++.++++|++++ +-               
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~---------------  123 (135)
T cd04621          63 KMKRKAGQKRYRYVKEVPLVAEDIMT---EEIITVSPNDDVVDAAKLMLEANISGLPVVDND-NI---------------  123 (135)
T ss_pred             hhhhhcccccccccccccccHHHhcC---CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCC-EE---------------
Confidence                                333332   23578999999999999997 678888888752 11               


Q ss_pred             eEEeeHHHHHHH
Q 041297          145 YCWLTQEDLIRY  156 (379)
Q Consensus       145 yC~LTQeDVvRF  156 (379)
                      .=++|+.||+++
T Consensus       124 ~Gvit~~di~~~  135 (135)
T cd04621         124 VGVITKTDICRE  135 (135)
T ss_pred             EEEEEHHHHhhC
Confidence            118999998863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.15  E-value=0.0025  Score=50.99  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=76.7

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+++..+|++.|.+.  ..+.++|+|.+|+++|-++..+|..+...       +       +.+.          
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~~~-------~-------~~~~----------   56 (121)
T cd04584           3 VVTITPTTTIAEALELMREH--KIRHLPVVDEEGRLVGIVTDRDLRDASPS-------P-------FTTL----------   56 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHc--CCCcccEECCCCcEEEEEEHHHHHHHhhh-------h-------cccc----------
Confidence            67788999999999999775  34789999999999999998777542110       0       0000          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                              +...+ ... ..     .                .         ...--...+++-.+..+|..++..+..+
T Consensus        57 --------~~~~~-~~~-~~-----~----------------~---------v~~~~~~~~~~i~~~~~l~~~~~~~~~~   96 (121)
T cd04584          57 --------SEHEL-YLL-LK-----M----------------P---------VKEIMTKDVITVHPLDTVEEAALLMREH   96 (121)
T ss_pred             --------hhhhh-hhh-cC-----c----------------C---------HHHHhhCCCeEECCCCcHHHHHHHHHHc
Confidence                    00000 000 00     0                0         0000112356778899999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++.|+|. |.++|+|+..
T Consensus        97 ~~~~~~V~~~-~~~~Gvv~~~  116 (121)
T cd04584          97 RIGCLPVVED-GRLVGIITET  116 (121)
T ss_pred             CCCeEEEeeC-CEEEEEEEHH
Confidence            9999999998 8999999854

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.15  E-value=0.0035  Score=50.49  Aligned_cols=115  Identities=13%  Similarity=0.134  Sum_probs=77.6

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..++++.+|++.|.+.  ....++|+|. |+++|-++..+|..+-..            +....+.  +.+++   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~-~~~~G~v~~~~l~~~~~~------------~~~~~~~--~~~~~---   62 (122)
T cd04637           3 VVTVEMDDRLEEVREIFEKH--KFHHLLVVED-NELVGVISDRDYLKAISP------------FLGTAGE--TEKDL---   62 (122)
T ss_pred             ceEeCCCCCHHHHHHHHHhC--CCCEEEEEeC-CeEEEEEEHHHHHHHHHH------------Hhccccc--hHHHH---
Confidence            77899999999999999764  3378999997 999999997777542100            0000000  00000   


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                .    ...     ...         .+               .   -...++++.+..++.+++..+..|
T Consensus        63 ----------~----~~~-----~~~---------~~---------------~---~~~~~~~v~~~~~l~~~~~~~~~~   96 (122)
T cd04637          63 ----------A----TLN-----RRA---------HQ---------------I---MTRDPITVSPDTPVDEASKLLLEN   96 (122)
T ss_pred             ----------H----HHH-----hHH---------HH---------------h---hcCCCeeeCCCCcHHHHHHHHHHc
Confidence                      0    000     000         00               0   113368899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+++..
T Consensus        97 ~~~~~~vv~~~~~~~Gvit~~  117 (122)
T cd04637          97 SISCLPVVDENGQLIGIITWK  117 (122)
T ss_pred             CCCeEeEECCCCCEEEEEEHH
Confidence            999999999999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.15  E-value=0.0013  Score=69.22  Aligned_cols=116  Identities=16%  Similarity=0.135  Sum_probs=85.4

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++..+.   ...++|++++-|+++.|. ++.+.+.|+++.-+-               .=++|.+|+.+.+...-   
T Consensus       449 V~dim~~~---~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~l---------------vGiVt~~dL~~~l~~~~---  507 (574)
T PRK01862        449 MRELIQPA---QTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRF---------------RGAVALKDITSDLLDKR---  507 (574)
T ss_pred             HHHHhcCC---CceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeE---------------EEEEEHHHHHHHhhccc---
Confidence            66765432   456899999999999998 578888887642211               01899999998765421   


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC--CcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE--GRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d--GkLIGeISa~~L~  228 (379)
                       .....++.+  +.+++ +..++.+++..+|++.|.+.  +...+||||++  |+++|-|+..|+-
T Consensus       508 -~~~~~~v~d--im~~~-~~~v~~d~~L~~al~~m~~~--~~~~lpVVd~~~~~~liGvIt~~DIl  567 (574)
T PRK01862        508 -DTTDKTAAD--YAHTP-FPLLTPDMPLGDALEHFMAF--QGERLPVVESEASPTLAGVVYKTSLL  567 (574)
T ss_pred             -ccccchHHH--hccCC-CeeECCCCCHHHHHHHHHhc--CCCeeeeEeCCCCCeEEEEEEHHHHH
Confidence             112234554  35677 88999999999999999885  44789999987  4899999988874

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.11  E-value=0.0018  Score=68.20  Aligned_cols=110  Identities=17%  Similarity=0.157  Sum_probs=81.7

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN  176 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG  176 (379)
                      ..+.|+++|-||+++|. ++...++|+++...+            ..=.=.+|..|+.+ ..       ..+..+|+++=
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~------------gkLvGIVT~~DLr~-~~-------~~~~~~V~dIM  167 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAH------------GKLLGIVTSRDYRI-SR-------MSLDTKVKDFM  167 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcC------------CEEEEEEEcHHhhc-cc-------cCCCCCHHHHh
Confidence            48999999999999999 567777777652111            00011889999843 21       13456677643


Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC  230 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C  230 (379)
                      --+++ +..+++++++.+|+++|.+.  +...+||||.+|+|+|=|+..||...
T Consensus       168 t~~~~-~itv~~d~~l~eAl~lM~e~--~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        168 TPFEK-LVTANEGTTLKEANDIIWDH--KLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCCC-eEEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence            22246 99999999999999999986  56999999999999999999998554

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.11  E-value=0.0021  Score=51.00  Aligned_cols=109  Identities=13%  Similarity=0.161  Sum_probs=74.9

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|++.|++.  ....++|+|.+|+++|-++..+|..+...       .             +...+   
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~Giv~~~dl~~~~~~-------~-------------~~~~~---   57 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKH--GYSAIPVLDKEGKYVGTISLTDILWKLKG-------L-------------ENLDL---   57 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHC--CCceeeeECCCCcEEEEEeHHHHHHHhhc-------c-------------CchhH---
Confidence            78899999999999999764  34789999999999999988887542210       0             00000   


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                .   . +.+    . .       . .+                  --+..+.++.+..+|.+++..+..+
T Consensus        58 ----------~---~-~~~----~-~-------v-~~------------------~~~~~~~~v~~~~~l~~a~~~~~~~   92 (116)
T cd04643          58 ----------E---R-LVD----L-K-------V-ID------------------VMNTDVPVIIDDADIEEILHLLIDQ   92 (116)
T ss_pred             ----------H---H-HhC----C-c-------H-HH------------------HhcCCCceecCCCCHHHHHHHHhcC
Confidence                      0   0 000    0 0       0 00                  0112367888999999999999887


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +  .+=|+|++|.+.|+++..
T Consensus        93 ~--~~~Vv~~~~~~~Gvit~~  111 (116)
T cd04643          93 P--FLPVVDDDGIFIGIITRR  111 (116)
T ss_pred             C--ceeEEeCCCeEEEEEEHH
Confidence            6  466899999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.10  E-value=0.0034  Score=50.61  Aligned_cols=100  Identities=18%  Similarity=0.220  Sum_probs=76.9

Q ss_pred             CceEEeCCCCchhHHHHHHhcC-ccEEEEecCCcccCCCCCCcccccCCcceE-EeeHHHHHHHHHhhhcccCCCCCCcc
Q 041297           95 GIVRHLKPSASLLEAVDLLLGG-VQNLVILPAGIKLQPKPSLKSTFHNDSEYC-WLTQEDLIRYFLNFIGLLNPTPNQPI  172 (379)
Q Consensus        95 gll~~V~P~tsLLdAie~m~~G-~~rllVi~s~~k~~~~~s~~~~~~~~~~yC-~LTQeDVvRFLl~~ig~l~p~p~~SI  172 (379)
                      .++..++|++++-++++.|.+. ..++.|+++..-             ..+|+ .+|..|+.+++.+             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-------------~~~~~G~v~~~dl~~~~~~-------------   55 (105)
T cd04591           2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEE-------------SPRLVGYILRSQLVVALKN-------------   55 (105)
T ss_pred             CceEEecccccHHHHHHHHHhCCCCCcceEcCCCC-------------CCEEEEEEeHHHHHHHHHH-------------
Confidence            3567889999999999999864 667766654210             11222 8999999988765             


Q ss_pred             cccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          173 NSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       173 ~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                          +..++ +..++.+++..+++++|++.  +...+||+ .+|+++|=++-.+|.
T Consensus        56 ----~m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~pVv-~~~~~~Gvvt~~dl~  103 (105)
T cd04591          56 ----YIDPS-PFTVSPRTSLEKVHQLFRKL--GLRHLLVV-DEGRLVGIITRKDLL  103 (105)
T ss_pred             ----hccCC-CceECCCCcHHHHHHHHHHc--CCCEEEEE-ECCeEEEEEEhhhhh
Confidence                55566 88999999999999999875  44788998 588999999887763

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.10  E-value=0.0054  Score=48.50  Aligned_cols=104  Identities=17%  Similarity=0.190  Sum_probs=75.5

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|++.|.+.  ....++|++.+|+++|-++..+|..       +            +..+..+      
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~~l~~-------~------------~~~~~~~------   55 (112)
T cd04624           3 VVTVDPDTSIREAAKLMAEE--NVGSVVVVDPDERPIGIVTERDIVR-------A------------VAAGIDL------   55 (112)
T ss_pred             CeEECCCCcHHHHHHHHHHc--CCCEEEEECCCCCEEEEeeHHHHHH-------H------------HhccCCC------
Confidence            67889999999999999764  3478999999999999997666532       0            0000000      


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                         .   + .       . .+               .   -.....+|.+..++..++.++..+
T Consensus        56 -------------------~---~-~-------v-~~---------------~---~~~~~~~v~~~~~~~~~~~~~~~~   86 (112)
T cd04624          56 -------------------D---T-P-------V-SE---------------I---MTRDLVTVDPDEPVAEAAKLMRKN   86 (112)
T ss_pred             -------------------c---c-C-------H-HH---------------h---ccCCCEEECCCCcHHHHHHHHHHc
Confidence                               0   0 0       0 00               0   012367899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEe
Q 041297          343 RDRLRSMAKAENPNFCPVRI  362 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~  362 (379)
                      +.+.+=|+|++|.+.|+++.
T Consensus        87 ~~~~~~Vv~~~g~~~Gilt~  106 (112)
T cd04624          87 NIRHHLVVDKGGELVGVISI  106 (112)
T ss_pred             CccEEEEEcCCCcEEEEEEH
Confidence            99999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.08  E-value=0.0034  Score=53.15  Aligned_cols=110  Identities=15%  Similarity=0.223  Sum_probs=78.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-------ccCCC-
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-------LLNPT-  167 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-------~l~p~-  167 (379)
                      +..+.+++++.|+++.|. .+...++|+++  .+        .      .=|+|..|+.+++.....       ..... 
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~--------~------~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~   66 (143)
T cd04634           3 PITCNADDTISDAARLLRENKISGAPVLDG--GK--------L------VGIVSESDILKLLVTHDPSGNLWLPSPLELI   66 (143)
T ss_pred             cEEecCCCCHHHHHHHHHHcCCCcceEeEC--Ce--------E------EEEecHHHHHHHHHhccCccccccCCcceee
Confidence            357899999999999998 57888888764  22        0      118999999998865331       00000 


Q ss_pred             --------------------CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          168 --------------------PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       168 --------------------p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                                          +..++.+  +.+++ +..++.+++..+|+..|.+.  +...++|++. |+++|=++..+|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~~~Vv~~-~~~~Gvvt~~dl  140 (143)
T cd04634          67 ELPLREFINWEETKRALTDAGKMKVRD--IMTKK-VITISPDASIEDAAELMVRH--KIKRLPVVED-GRLVGIVTRGDI  140 (143)
T ss_pred             eccchheeehHHHHHHHHHHhcCCHHH--HcCCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHh
Confidence                                1222322  23556 88999999999999999875  3367999988 999999988776


Q ss_pred             C
Q 041297          228 N  228 (379)
Q Consensus       228 ~  228 (379)
                      -
T Consensus       141 ~  141 (143)
T cd04634         141 I  141 (143)
T ss_pred             h
Confidence            3

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.08  E-value=0.0028  Score=50.20  Aligned_cols=100  Identities=9%  Similarity=0.048  Sum_probs=75.5

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-ccccccCC
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-CFCSFAKD   93 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-VS~li~~~   93 (379)
                      .++.+....|+++|++.+.+.+...+||-+.                      ++++|+|+.-|+...... +.++..  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~G~v~~~~l~~~~~~~~~~~~~--   57 (104)
T cd04594           2 KDIKVKDYDKVYEAKRIMIENDLLSLPVVDY----------------------NKFLGAVYLKDIENATYGDVVDYIV--   57 (104)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCcEEEEEEC----------------------CEEEEEEEHHHHhhhcccchhhhhh--
Confidence            3678889999999999999888888888762                      368999999998764321 444332  


Q ss_pred             CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH
Q 041297           94 SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR  155 (379)
Q Consensus        94 ~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR  155 (379)
                       .....++++.++.|+++.|. .+...++|+++  .+              -..++|+.|+++
T Consensus        58 -~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~--------------~iGvit~~dl~~  103 (104)
T cd04594          58 -RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD--GK--------------FKGIVTLDSILD  103 (104)
T ss_pred             -cCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC--CE--------------EEEEEEHHHhhc
Confidence             23568999999999999998 67888888752  11              134888888764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.08  E-value=0.0051  Score=49.00  Aligned_cols=105  Identities=19%  Similarity=0.174  Sum_probs=76.0

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      .+.++.+++..+|++.|.+.  ....++|++.+|+++|-++..++...       +           .... .++     
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~dl~~~-------~-----------~~~~-~~~-----   57 (113)
T cd04607           4 QLLVSPDASILDALRKIDKN--ALRIVLVVDENGRLLGTVTDGDIRRA-------L-----------LKGL-SLD-----   57 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhc--CcCEEEEECCCCCEEEEEEcHHHHHH-------H-----------hcCC-CcC-----
Confidence            45688999999999999765  44688999999999999987765320       0           0000 000     


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             + .       . .+.                  -+....++.+..+|.+++..+..+
T Consensus        58 -----------------------~-~-------v-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~   87 (113)
T cd04607          58 -----------------------D-P-------V-SEV------------------MNRNPITAKVGSSREEILALMRER   87 (113)
T ss_pred             -----------------------C-C-------H-HHh------------------hcCCCEEEcCCCCHHHHHHHHHHC
Confidence                                   0 0       0 000                  012256899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|++|.++|+|+.+
T Consensus        88 ~~~~~~Vv~~~~~~~Gvit~~  108 (113)
T cd04607          88 SIRHLPILDEEGRVVGLATLD  108 (113)
T ss_pred             CCCEEEEECCCCCEEEEEEhH
Confidence            999999999999999999854

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.08  E-value=0.0029  Score=66.07  Aligned_cols=204  Identities=16%  Similarity=0.154  Sum_probs=112.2

Q ss_pred             HHHHHhhhcccCCCCC----CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          154 IRYFLNFIGLLNPTPN----QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       154 vRFLl~~ig~l~p~p~----~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      .+|+++.++.-.|...    .++.++  ..++ +..++.+++..+|+++|++.  +...+||||.+|+++|-|+..+|..
T Consensus        48 ~e~vl~~~~~~~p~ll~~~~~~V~di--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~l~Givt~~di~~  122 (546)
T PRK14869         48 TKFVLDYFGVEAPELIEDVKPQVRDL--EIDK-PVTVSPDTSLKEAWNLMDEN--NVKTLPVVDEEGKLLGLVSLSDLAR  122 (546)
T ss_pred             HHHHHHHhCCCchhhhhccCCcHHHh--cCCC-CcEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCEEEEEEEHHHHHH
Confidence            4678887776655543    345553  3566 99999999999999999875  4589999999999999999998865


Q ss_pred             CcHH----HHHHHHhcchhhhhhhhccCC---Chhh------------HHHHHHHHhhhh-----hh--hhhhhhhhccc
Q 041297          230 CDET----VAAAIATLLAGDLMAYMDCGR---PLKD------------LVRLVKQRLDEK-----NM--VGLLELMEDDL  283 (379)
Q Consensus       230 CDet----~a~A~atLSAgdf~a~vd~~~---ppe~------------l~~~v~~~l~~k-----~l--~~~~~l~~~~~  283 (379)
                      .-..    ...+.+.-+..++...+++.-   +++.            ....+.+++++.     |-  +..+..++.+.
T Consensus       123 ~~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~  202 (546)
T PRK14869        123 AYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGV  202 (546)
T ss_pred             HHHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCC
Confidence            3211    112222333344444443310   1110            001112222221     00  00011111111


Q ss_pred             c---c-cCCCCCCCC---CCcccccccc----C--CcCCCC--CCcccc-cCCccceeecCCCcHHHHHHHHHHcCCcEE
Q 041297          284 E---I-SSGSCSNSS---SSDEESSTGS----A--RSARSG--GYSARV-VHRSEAIVCYPWSSLMAVIMQALARRDRLR  347 (379)
Q Consensus       284 ~---~-ss~~~ssss---ssDee~~~g~----~--~~~r~~--~~S~~~-~~~~~~vtC~p~SSLvAVMaQAlaHRV~~v  347 (379)
                      +   + ...+.+ ..   -.++...+.-    .  ...|..  +.+... ..+..++++.+..++.++...+..++.+++
T Consensus       203 ~~lIlt~g~~~~-~~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~  281 (546)
T PRK14869        203 RLLIITGGAPVS-EDVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSY  281 (546)
T ss_pred             CEEEECCCCCCC-HHHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCce
Confidence            1   0 000000 00   0000000000    0  000100  111111 122568999999999999999999999999


Q ss_pred             EEeeCCCCcccceEee
Q 041297          348 SMAKAENPNFCPVRIQ  363 (379)
Q Consensus       348 WVvd~e~~l~~~v~~~  363 (379)
                      =|+|++|.++|+|+..
T Consensus       282 PVvd~~g~lvGiit~~  297 (546)
T PRK14869        282 PVVDEDGKVVGVISRY  297 (546)
T ss_pred             EEEcCCCCEEEEEEHH
Confidence            9999999999999953

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.07  E-value=0.0022  Score=51.52  Aligned_cols=103  Identities=12%  Similarity=0.157  Sum_probs=74.0

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL  259 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l  259 (379)
                      +..+..+++..+|++.|++.  ....++|+|.   +|+++|-++..++.....                   ...|.+++
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-------------------~~~~v~~~   62 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKK--GFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-------------------SETPLSEV   62 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHc--CCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-------------------cCCCHHHh
Confidence            67788999999999999764  4468899997   789999998766632100                   00000000


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297          260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA  339 (379)
Q Consensus       260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA  339 (379)
                                         +                                      +.....+.+.+..+|.+++..+
T Consensus        63 -------------------~--------------------------------------~~~~~~~~~~~~~~l~~~l~~~   85 (114)
T cd04602          63 -------------------M--------------------------------------TPREVLVVAPTGITLEEANEIL   85 (114)
T ss_pred             -------------------c--------------------------------------CCCceEEECCCCCCHHHHHHHH
Confidence                               0                                      0111134445599999999999


Q ss_pred             HHcCCcEEEEeeCCCCcccceEee
Q 041297          340 LARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       340 laHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..++.+++=|+|++|.++|+|..+
T Consensus        86 ~~~~~~~~pVv~~~~~~~Gvit~~  109 (114)
T cd04602          86 RESKKGKLPIVNDDGELVALVTRS  109 (114)
T ss_pred             HhcCCCceeEECCCCeEEEEEEHH
Confidence            999999999999999999999854

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.07  E-value=0.002  Score=51.00  Aligned_cols=102  Identities=15%  Similarity=0.141  Sum_probs=75.7

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+.+..+|++.|.+.  ....++|+|. |+++|-+...+|..+.+.           ++    ..          
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~-~~~~G~v~~~dl~~~~~~-----------~~----~~----------   55 (110)
T cd04595           4 VKTVRPEATIEEARELLLRY--GHTALPVVEG-GRVVGIISRRDVEKALRH-----------GL----GH----------   55 (110)
T ss_pred             ceEeCCCCcHHHHHHHHHHc--CCCeeeEeeC-CEEEEEEEHHHHHHHHhc-----------cc----cc----------
Confidence            77889999999999999764  3468999998 999999987776442100           00    00          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             . .       . .+.                  -...++++.+..++.+++..+..+
T Consensus        56 -----------------------~-~-------~-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~   85 (110)
T cd04595          56 -----------------------A-P-------V-KDY------------------MSTDVVTVPPDTPLSEVQELMVEH   85 (110)
T ss_pred             -----------------------C-c-------H-HHH------------------hcCCCEEECCCCcHHHHHHHHHHc
Confidence                                   0 0       0 000                  112467899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..+++=|+| +|...|+|+.+
T Consensus        86 ~~~~~~V~~-~~~~~Gvvt~~  105 (110)
T cd04595          86 DIGRVPVVE-DGRLVGIVTRT  105 (110)
T ss_pred             CCCeeEEEe-CCEEEEEEEhH
Confidence            999999999 89999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.05  E-value=0.0021  Score=50.88  Aligned_cols=98  Identities=11%  Similarity=0.142  Sum_probs=71.4

Q ss_pred             ccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc---------cccc
Q 041297           18 ALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC---------PCFC   88 (379)
Q Consensus        18 ~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la---------~VS~   88 (379)
                      ++....|+.+|++.+.+++...++|-+                      .++++|+|+--|+.-++.         .+++
T Consensus         5 ~v~~~~~~~~~~~~~~~~~~~~~~v~~----------------------~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~   62 (112)
T cd04625           5 TVAPETLLSEAVATMAEQDLGSLVVME----------------------RGELVGLLTFREVLQAMAQHGAGVLDTTVRA   62 (112)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeEEEee----------------------CCEEEEEEEHHHHHHHHHhcCCchhcCCHHH
Confidence            456778999999999877765555543                      257999999999875442         1555


Q ss_pred             cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                      +..   .....+++++++.+|++.|. .+..+++|++++ +-               .=++|+.|+++|
T Consensus        63 ~~~---~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~-~~---------------~Gvvt~~dl~~~  112 (112)
T cd04625          63 IMN---PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGG-TL---------------LGVISFHDVAKA  112 (112)
T ss_pred             HhC---CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECC-EE---------------EEEEEHHHhhcC
Confidence            543   23567999999999999998 689999998631 11               118899998874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.04  E-value=0.0028  Score=50.00  Aligned_cols=84  Identities=15%  Similarity=0.118  Sum_probs=65.6

Q ss_pred             cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccccc
Q 041297           17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFCSF   90 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~li   90 (379)
                      +.+....|+++|++.+.+++...++|-+.                      ++++|+|+.-|++-....      ++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~G~v~~~~l~~~~~~~~~~~~v~~~~   61 (110)
T cd04588           4 ITLNPNATLREAARLFNTHHIHGAPVVDD----------------------GKLVGIVTLSDIAHAIARGLELAKVKDVM   61 (110)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEeeC----------------------CEEEEEEEHHHHHHHHhccccccCHHHHh
Confidence            34567789999999999888888888772                      369999999998865442      44443


Q ss_pred             cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecC
Q 041297           91 AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPA  125 (379)
Q Consensus        91 ~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s  125 (379)
                      .   .....++|++++.|+++.|. .+.+.++|++.
T Consensus        62 ~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~   94 (110)
T cd04588          62 T---KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD   94 (110)
T ss_pred             c---CCceEECCCCCHHHHHHHHHhcCCCEEEEECC
Confidence            2   34678999999999999998 67888888764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.03  E-value=0.0024  Score=65.94  Aligned_cols=105  Identities=17%  Similarity=0.240  Sum_probs=82.3

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC---CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCCh
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE---GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPL  256 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d---GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~pp  256 (379)
                      ++ +..++.++++.+|+++|++.  ..+.+||+|.+   |+++|-++..||....                   +...|.
T Consensus        88 ~~-~vtl~~~~tv~eal~~m~~~--~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-------------------~~~~~V  145 (450)
T TIGR01302        88 SD-PVTISPETTVADVLELMERK--GISGIPVVEDGDMTGKLVGIITKRDIRFVK-------------------DKGKPV  145 (450)
T ss_pred             cC-ceEeCCCCCHHHHHHHHHHc--CCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-------------------cCCCCH
Confidence            46 88999999999999999875  55899999998   8999999987774200                   000000


Q ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHH
Q 041297          257 KDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVI  336 (379)
Q Consensus       257 e~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVM  336 (379)
                                                               ++.                + ++.+++++.+..+|..++
T Consensus       146 -----------------------------------------~dv----------------m-~~~~~~~V~~~~sl~eal  167 (450)
T TIGR01302       146 -----------------------------------------SEV----------------M-TREEVITVPEGIDLEEAL  167 (450)
T ss_pred             -----------------------------------------HHh----------------h-CCCCCEEECCCCcHHHHH
Confidence                                                     000                0 113578999999999999


Q ss_pred             HHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          337 MQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       337 aQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      ..+..|+.+++-|+|++|.+.|+|..+.
T Consensus       168 ~~m~~~~~~~lpVVDe~G~lvGiVT~~D  195 (450)
T TIGR01302       168 KVLHEHRIEKLPVVDKNGELVGLITMKD  195 (450)
T ss_pred             HHHHHcCCCeEEEEcCCCcEEEEEEhHH
Confidence            9999999999999999999999998754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.00  E-value=0.0025  Score=67.23  Aligned_cols=113  Identities=9%  Similarity=0.021  Sum_probs=85.3

Q ss_pred             ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhh
Q 041297          174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYM  250 (379)
Q Consensus       174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~v  250 (379)
                      +.|++ ++ +..+.+++++.+|+++|.+.  ....+||||.   +|+++|-|+..||..-.      ..+..+.|+|   
T Consensus       103 ~~gmi-~d-pvtV~pd~tV~dA~~lm~~~--~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------~~~~~V~eIM---  169 (505)
T PLN02274        103 RVGFV-SD-PVVKSPSSTISSLDELKASR--GFSSVCVTETGTMGSKLLGYVTKRDWDFVN------DRETKLSEVM---  169 (505)
T ss_pred             ccccc-CC-CeeeCCCCcHHHHHHHHHhc--CCceEEEEeCCCcCCeEEEEEEHHHHhhcc------ccCCcHHHHh---
Confidence            34544 56 78899999999999999765  4589999997   48999999998885410      0000000110   


Q ss_pred             ccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCC
Q 041297          251 DCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWS  330 (379)
Q Consensus       251 d~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~S  330 (379)
                                                                                         +.....++..+..
T Consensus       170 -------------------------------------------------------------------t~~~~lvtv~~~~  182 (505)
T PLN02274        170 -------------------------------------------------------------------TSDDDLVTAPAGI  182 (505)
T ss_pred             -------------------------------------------------------------------ccCCCcEEECCCC
Confidence                                                                               1112257899999


Q ss_pred             cHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehhh
Q 041297          331 SLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKK  366 (379)
Q Consensus       331 SLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~  366 (379)
                      +|.+++..+..|+..++=|+|+++.++|+|+.+--.
T Consensus       183 sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIl  218 (505)
T PLN02274        183 DLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVK  218 (505)
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence            999999999999999999999999999999976543

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.00  E-value=0.0027  Score=65.37  Aligned_cols=121  Identities=12%  Similarity=0.033  Sum_probs=88.4

Q ss_pred             cccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHH
Q 041297          162 GLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAI  238 (379)
Q Consensus       162 g~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~  238 (379)
                      ..+-..+..++.++  .+++ +..++.++++.+|++.|++...   ....++|+|++|+++|-++..+|...+..     
T Consensus       123 ~~ll~~~e~tvg~i--Mt~~-~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~~~-----  194 (449)
T TIGR00400       123 NLLLSYSDDSAGRI--MTIE-YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAKPE-----  194 (449)
T ss_pred             HHHhCCCcchHHHh--CcCc-eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCCCC-----
Confidence            33334556666665  3577 9999999999999999986322   22468899999999999987666331100     


Q ss_pred             HhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCccccc
Q 041297          239 ATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVV  318 (379)
Q Consensus       239 atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~  318 (379)
                        -+++|+                                                                        
T Consensus       195 --~~v~~i------------------------------------------------------------------------  200 (449)
T TIGR00400       195 --EILSSI------------------------------------------------------------------------  200 (449)
T ss_pred             --CcHHHH------------------------------------------------------------------------
Confidence              000000                                                                        


Q ss_pred             CCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          319 HRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       319 ~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      -+..+++.++..++.+++.++..|+...+-|||++|.++|+|+...
T Consensus       201 m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~D  246 (449)
T TIGR00400       201 MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDD  246 (449)
T ss_pred             hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHH
Confidence            0123578899999999999999999999999999999999999753

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.95  E-value=0.0018  Score=51.81  Aligned_cols=110  Identities=16%  Similarity=0.112  Sum_probs=74.1

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+++..+|++.|++.- +...++|+|. |+++|-++..+|..+...      ..+ .++                
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~------~~~-~~~----------------   57 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDP-DLSALAVVDD-GRPVGLIMREALMELLST------PYG-RAL----------------   57 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCC-CccEEEEEEC-CeeEEEEEHHHHHHHHhc------hhh-HHH----------------
Confidence            667889999999999997631 1468999999 999999987776431100      000 000                


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                      . ..   + .       . .+.                  -...+.+|.+..++.+++.-+..+
T Consensus        58 ----------------~-~~---~-~-------v-~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~   90 (119)
T cd04598          58 ----------------Y-GK---K-P-------V-SEV------------------MDPDPLIVEADTPLEEVSRLATGR   90 (119)
T ss_pred             ----------------H-cC---C-c-------H-HHh------------------cCCCcEEecCCCCHHHHHHHHHcC
Confidence                            0 00   0 0       0 000                  113468899999999999999988


Q ss_pred             CCcEE---EEeeCCCCcccceEeeh
Q 041297          343 RDRLR---SMAKAENPNFCPVRIQA  364 (379)
Q Consensus       343 RV~~v---WVvd~e~~l~~~v~~~~  364 (379)
                      ...++   .|+|++|.++|+|+...
T Consensus        91 ~~~~~~~~~vv~~~~~~~Gvvs~~d  115 (119)
T cd04598          91 DSQNLYDGFIVTEEGRYLGIGTVKD  115 (119)
T ss_pred             CcccccccEEEeeCCeEEEEEEHHH
Confidence            87555   49999999999998653

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PF00571 CBS: CBS domain CBS domain web page

Probab=96.95  E-value=0.0012  Score=47.69  Aligned_cols=49  Identities=27%  Similarity=0.414  Sum_probs=43.1

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      .+++ +..++.++++.+|++.|++.  ....+||+|.+|+++|-||..+|..
T Consensus         5 m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~V~d~~~~~~G~is~~dl~~   53 (57)
T PF00571_consen    5 MTPP-PITVSPDDSLEEALEIMRKN--GISRLPVVDEDGKLVGIISRSDLLK   53 (57)
T ss_dssp             SBSS-SEEEETTSBHHHHHHHHHHH--TSSEEEEESTTSBEEEEEEHHHHHH
T ss_pred             CcCC-CEEEcCcCcHHHHHHHHHHc--CCcEEEEEecCCEEEEEEEHHHHHh
Confidence            4566 99999999999999999986  4589999999999999999888754

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=96.94  E-value=0.0027  Score=59.52  Aligned_cols=103  Identities=14%  Similarity=0.057  Sum_probs=77.8

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+++..+|++.|.+.  ....++|+|.+|+++|-++..+|...       ..           .. .+++.    
T Consensus       166 ~~~v~~~~~v~~a~~~~~~~--~~~~~~Vvd~~g~~~Givt~~dl~~~-------~~-----------~~-~~~~~----  220 (268)
T TIGR00393       166 LPLIAPTTSFKDALLEMSEK--RLGSAIVCDENNQLVGVFTDGDLRRA-------LL-----------GG-GSLKS----  220 (268)
T ss_pred             CCcCCCCCcHHHHHHHHhhc--CCcEEEEEeCCCCEEEEEEcHHHHHH-------Hh-----------cC-CcccC----
Confidence            77888999999999999764  45789999999999999998887540       00           00 00000    


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                               .       . +|.                  -+...+++.+..+|.+++..+..+
T Consensus       221 -------------------------~-------v-~~i------------------m~~~~~~v~~~~~l~~a~~~m~~~  249 (268)
T TIGR00393       221 -------------------------E-------V-RDF------------------MTLGPKTFKLDALLLEALEFLERR  249 (268)
T ss_pred             -------------------------c-------H-HHh------------------CCCCCeEECCCCcHHHHHHHHHHc
Confidence                                     0       0 000                  112367899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceE
Q 041297          343 RDRLRSMAKAENPNFCPVR  361 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~  361 (379)
                      +.+++=|+|++|.++|+|+
T Consensus       250 ~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       250 KITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             CCcEEEEECCCCeEEEEEC
Confidence            9999999999999999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.91  E-value=0.0032  Score=66.07  Aligned_cols=103  Identities=17%  Similarity=0.211  Sum_probs=80.7

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      ...+.|++++-||++.|. +++..++|+++..+-               .=++|..|+. ++       .  +..+|.++
T Consensus        99 pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gkl---------------vGIVT~rDL~-~~-------~--~~~~V~di  153 (479)
T PRK07807         99 PVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRP---------------VGVVTEADCA-GV-------D--RFTQVRDV  153 (479)
T ss_pred             CeEECCCCCHHHHHHHHHhcCCceEEEECCCCeE---------------EEEEeHHHHh-cC-------c--cCCCHHHh
Confidence            568999999999999998 588888887643221               1189999983 21       1  12446653


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                        .+++ +..++++++..+|+++|.+.  +...+||||.+|+++|-|+..||-.
T Consensus       154 --Mt~~-~itV~~d~sL~eAl~lM~~~--~i~~LPVVD~~g~lvGIIT~~DIl~  202 (479)
T PRK07807        154 --MSTD-LVTLPAGTDPREAFDLLEAA--RVKLAPVVDADGRLVGVLTRTGALR  202 (479)
T ss_pred             --ccCC-ceEECCCCcHHHHHHHHHhc--CCCEEEEEcCCCeEEEEEEHHHHHH
Confidence              5677 99999999999999999886  5589999999999999999998854

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.91  E-value=0.003  Score=49.97  Aligned_cols=107  Identities=14%  Similarity=0.105  Sum_probs=76.3

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+++..+|++.|.+-  ....++|++.+|+++|-++..+|...-       +.   .++   ...          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~v~~~~l~~~~-------~~---~~~---~~~----------   57 (114)
T cd04629           3 PVTFTPDMSVTEAVEKLLKS--KISGGPVVDDNGNLVGFLSEQDCLKQL-------LE---SSY---HCD----------   57 (114)
T ss_pred             CeEeCCCCCHHHHHHHHHhc--CCCCccEECCCCeEEEEeehHHHHHHh-------hh---hhh---ccC----------
Confidence            67889999999999999653  346899999999999999888775410       00   000   000          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                        .    ...       . .+.                  -...+.++.+..+|.+++..+..+
T Consensus        58 ------------------~----~~~-------v-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~   89 (114)
T cd04629          58 ------------------G----VAT-------V-RDI------------------MTTEVLTVSPDDSIVDLAQLMLKA   89 (114)
T ss_pred             ------------------C----Ccc-------H-HHH------------------hccCceEECCCCcHHHHHHHHHHh
Confidence                              0    000       0 000                  012367899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|+ |.++|+|+.+
T Consensus        90 ~~~~~~Vv~~-~~~~Gvit~~  109 (114)
T cd04629          90 KPKRYPVVDD-GKLVGQISRR  109 (114)
T ss_pred             CCCccCEEEC-CEEEEEEEHH
Confidence            9999989998 8999999854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.89  E-value=0.0034  Score=50.05  Aligned_cols=99  Identities=15%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             cccCccccHHHHHHHHHhcC-CceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------cc
Q 041297           17 IALGQFIHRCHALLALKRLN-ESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------CF   87 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~-~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------VS   87 (379)
                      +++....|+.+|++.+.+++ ...++|=+                      ..+++|+|+.-|++-++..        +.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------------------~~~~~G~v~~~dl~~~~~~~~~~~~~~i~   61 (115)
T cd04620           4 LTVTPDTPVADAIALMSQQGDSSCVLVVE----------------------KGRLLGIFTERDIVRLTAIGKDLSDLPIG   61 (115)
T ss_pred             eEeCCCCcHHHHHHHHHhcCCCceEEEcC----------------------CCcEEEEEeHHHHHHHHhcCCCccccCHH
Confidence            45677889999999998777 55666654                      2369999999998864431        33


Q ss_pred             ccccCCCCceEEeCCC--CchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH
Q 041297           88 CSFAKDSGIVRHLKPS--ASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR  155 (379)
Q Consensus        88 ~li~~~~gll~~V~P~--tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR  155 (379)
                      ++..+   .+..+.|+  +++.+|++.|. .+.+.++|++...+-               .=++|++|++|
T Consensus        62 ~~~~~---~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~---------------~Gvit~~dl~~  114 (115)
T cd04620          62 EVMTQ---PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQL---------------IGLVTAESIRQ  114 (115)
T ss_pred             HhcCC---CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCE---------------EEEEEhHHhhc
Confidence            43322   24567776  78999999999 578889887643211               11899999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.89  E-value=0.0033  Score=66.26  Aligned_cols=106  Identities=17%  Similarity=0.221  Sum_probs=79.6

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceE-EeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYC-WLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC-~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      ...+.|+++|-||+++|. .+...++|+++.-.+             .++. ++|..|+. |..        .+..+|++
T Consensus       110 pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~-------------GklvGIVT~~DL~-~v~--------~~~~~V~e  167 (505)
T PLN02274        110 PVVKSPSSTISSLDELKASRGFSSVCVTETGTMG-------------SKLLGYVTKRDWD-FVN--------DRETKLSE  167 (505)
T ss_pred             CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcC-------------CeEEEEEEHHHHh-hcc--------ccCCcHHH
Confidence            578999999999999998 578888887642100             1111 89999984 432        23556666


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      +=--+++ +..++.+++..+|+++|.+.  +...+||||.+|+|+|=|+..||
T Consensus       168 IMt~~~~-lvtv~~~~sL~eAl~~m~~~--~~~~LPVVD~~g~LvGvITr~DI  217 (505)
T PLN02274        168 VMTSDDD-LVTAPAGIDLEEAEAVLKDS--KKGKLPLVNEDGELVDLVTRTDV  217 (505)
T ss_pred             HhccCCC-cEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHH
Confidence            4322344 78999999999999999986  55899999999999999987776

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.85  E-value=0.003  Score=49.65  Aligned_cols=106  Identities=19%  Similarity=0.191  Sum_probs=77.0

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+++..+|++.|++.  ....++|++.+|+++|-|+..+|..+-.                  ... ..+     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~G~v~~~~l~~~~~------------------~~~-~~~-----   56 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHS--PENNFPVVDDDGRLVGIVSLDDIREILF------------------DPS-LYD-----   56 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhC--CCcceeEECCCCCEEEEEEHHHHHHHHh------------------ccc-ccc-----
Confidence            77899999999999999775  3378999999999999998777653100                  000 000     


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                         .   . .       . .+.                  -+..+.++.+..++..++.++..+
T Consensus        57 -------------------~---~-~-------v-~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~   87 (114)
T cd04613          57 -------------------L---V-V-------A-SDI------------------MTKPPVVVYPEDSLEDALKKFEDS   87 (114)
T ss_pred             -------------------c---E-E-------H-HHh------------------ccCCCcEEcCCCCHHHHHHHHhhC
Confidence                               0   0 0       0 000                  112367888999999999999999


Q ss_pred             CCcEEEEeeC-CCCcccceEee
Q 041297          343 RDRLRSMAKA-ENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~-e~~l~~~v~~~  363 (379)
                      +.+++=|+|. +|.++|+|...
T Consensus        88 ~~~~~~Vv~~~~~~~~Gvvt~~  109 (114)
T cd04613          88 DYEQLPVVDDDPGKLLGILSRS  109 (114)
T ss_pred             CccEeeEEeCCCCEEEEEEEhH
Confidence            9999999998 89999999754

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.80  E-value=0.0065  Score=63.70  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=80.0

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      +.++ ...+..+++..+|+++|++.  ....++|+| +|+++|-++-.||...+.                    ..|.+
T Consensus        94 m~~~-pvtv~p~~tI~eA~~lm~~~--~~~~~vVvD-~gklvGIVT~rDL~~~~~--------------------~~~V~  149 (475)
T TIGR01303        94 VLDT-PITLAPHDTVSDAMALIHKR--AHGAAVVIL-EDRPVGLVTDSDLLGVDR--------------------FTQVR  149 (475)
T ss_pred             cccC-CeEECCCCCHHHHHHHHHhc--CCeEEEEEE-CCEEEEEEEHHHhhcCCC--------------------CCCHH
Confidence            4456 78899999999999999875  336677776 589999999988854220                    00000


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                      ++                                                           -+..++++.+..+|.+++.
T Consensus       150 dI-----------------------------------------------------------Mt~~litv~~~~sL~eAl~  170 (475)
T TIGR01303       150 DI-----------------------------------------------------------MSTDLVTAPADTEPRKAFD  170 (475)
T ss_pred             HH-----------------------------------------------------------ccCCceEeCCCCcHHHHHH
Confidence            00                                                           0134689999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .|..|+++++-|||++|.++|+|+.+-
T Consensus       171 lM~~~~i~~LPVVD~~g~LvGIIT~~D  197 (475)
T TIGR01303       171 LLEHAPRDVAPLVDADGTLAGILTRTG  197 (475)
T ss_pred             HHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence            999999999999999999999998654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.80  E-value=0.0097  Score=46.84  Aligned_cols=101  Identities=19%  Similarity=0.230  Sum_probs=72.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|+.++-++++.|. ++..+++|++..-+               -+=++|+.|+++..          ...++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------------~~g~v~~~~l~~~~----------~~~~~~~~   57 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGE---------------LVGIITRKDLLRNP----------EEEQLALL   57 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCc---------------EEEEEEHHHHHhcc----------ccchHHHH
Confidence            456889999999999997 46667777654311               12288999987521          11223332


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        ..++ +..|+.+++..+++..|++.  +...+||++ +|+++|-|+..++-
T Consensus        58 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vvd-~~~~~G~it~~d~~  104 (106)
T cd04638          58 --MTRD-PPTVSPDDDVKEAAKLMVEN--NIRRVPVVD-DGKLVGIVTVADIV  104 (106)
T ss_pred             --hcCC-CceECCCCCHHHHHHHHHHc--CCCEEEEEE-CCEEEEEEEHHHhh
Confidence              3556 88899999999999999875  336799998 58999999987763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=96.79  E-value=0.0045  Score=63.75  Aligned_cols=103  Identities=24%  Similarity=0.296  Sum_probs=77.7

Q ss_pred             eEEeCCCCchhHHHHHHhc------CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCC
Q 041297           97 VRHLKPSASLLEAVDLLLG------GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQ  170 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~~------G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~  170 (379)
                      +..+++++++-||++.|.+      +...+.|+++.-+-               .=.+|..|+++         + -+..
T Consensus       141 ~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l---------------~GvV~l~dLl~---------a-~~~~  195 (449)
T TIGR00400       141 YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHL---------------KGVLSIRDLIL---------A-KPEE  195 (449)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeE---------------EEEEEHHHHhc---------C-CCCC
Confidence            6789999999999999973      34455555432111               11788888864         1 1344


Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ++.+  +.+++ ++.++.+++..+|++.|++.  +..++||||.+|+++|-|+..|+-.
T Consensus       196 ~v~~--im~~~-~~~v~~~~~~~eal~~m~~~--~~~~lpVVD~~g~lvGiIt~~Dil~  249 (449)
T TIGR00400       196 ILSS--IMRSS-VFSIVGVNDQEEVARLIQKY--DFLAVPVVDNEGRLVGIVTVDDIID  249 (449)
T ss_pred             cHHH--HhCCC-CeeECCCCCHHHHHHHHHHc--CCCEEeEEcCCCeEEEEEEHHHHHH
Confidence            5555  35677 99999999999999999985  5689999999999999999998854

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.75  E-value=0.0057  Score=48.38  Aligned_cols=85  Identities=16%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------cc
Q 041297           17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------CF   87 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------VS   87 (379)
                      ..+....|+.+|++.+.+.+...+||.+.                      .+++|+|+.-|++-++..         +.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~   61 (112)
T cd04802           4 ITVDPDTTVYEAANIMTENNIGRLIVVDN----------------------EKPVGIITERDLVKKVVSRNLKPREVPVG   61 (112)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCEEEEEEC----------------------CEEEEEEEHHHHHHHHhhccCCcccCCHH
Confidence            34667789999999999888889999872                      269999999998864421         33


Q ss_pred             ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC
Q 041297           88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG  126 (379)
Q Consensus        88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~  126 (379)
                      ++..   -.+..+.|++++.|+++.|. .+.+.++|++..
T Consensus        62 ~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~   98 (112)
T cd04802          62 EVMS---TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD   98 (112)
T ss_pred             HhcC---CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC
Confidence            4432   23667899999999999999 678888887643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PF00571 CBS: CBS domain CBS domain web page

Probab=96.74  E-value=0.0027  Score=45.75  Aligned_cols=43  Identities=9%  Similarity=-0.047  Sum_probs=40.4

Q ss_pred             cceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          322 EAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       322 ~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +++++++..|+.+++..+..++.++++|+|++|.++|+++..-
T Consensus         8 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~d   50 (57)
T PF00571_consen    8 PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSD   50 (57)
T ss_dssp             SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHH
T ss_pred             CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHH
Confidence            6789999999999999999999999999999999999998643

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.67  E-value=0.0084  Score=50.76  Aligned_cols=136  Identities=15%  Similarity=0.102  Sum_probs=78.3

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +.+++++++..++++.|++.  ...++||++. |+++|-++..+|..       ++......+  .+... .....+..-
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~Vvd~-~~~~G~v~~~dl~~-------~~~~~~~~~--~~~~~-~~~~~~~~~   69 (143)
T cd04634           3 PITCNADDTISDAARLLREN--KISGAPVLDG-GKLVGIVSESDILK-------LLVTHDPSG--NLWLP-SPLELIELP   69 (143)
T ss_pred             cEEecCCCCHHHHHHHHHHc--CCCcceEeEC-CeEEEEecHHHHHH-------HHHhccCcc--ccccC-Ccceeeecc
Confidence            78999999999999999875  4479999998 99999998887643       111100000  00000 000000000


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                      +++-++.+......+...     . .                         ....--...+.++.+..++..++..+..+
T Consensus        70 ~~~~~~~~~~~~~~~~~~-----~-~-------------------------~v~~~~~~~~~~v~~~~~l~~a~~~~~~~  118 (143)
T cd04634          70 LREFINWEETKRALTDAG-----K-M-------------------------KVRDIMTKKVITISPDASIEDAAELMVRH  118 (143)
T ss_pred             chheeehHHHHHHHHHHh-----c-C-------------------------CHHHHcCCCCeEECCCCcHHHHHHHHHHc
Confidence            000000000000000000     0 0                         00000123468999999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|. |..+|+|+..
T Consensus       119 ~~~~~~Vv~~-~~~~Gvvt~~  138 (143)
T cd04634         119 KIKRLPVVED-GRLVGIVTRG  138 (143)
T ss_pred             CCCEEEEEEC-CEEEEEEEHH
Confidence            9999999998 8899999854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.67  E-value=0.0079  Score=62.22  Aligned_cols=105  Identities=14%  Similarity=0.296  Sum_probs=81.2

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCc--ccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGI--KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN  173 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~--k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~  173 (379)
                      +..++|+.++-||++.|. .|..+++|+++..  .+              -.=++|..|+.+ ...        +..++.
T Consensus        90 ~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~--------------lvGIVt~rDL~~-~~~--------~~~~V~  146 (450)
T TIGR01302        90 PVTISPETTVADVLELMERKGISGIPVVEDGDMTGK--------------LVGIITKRDIRF-VKD--------KGKPVS  146 (450)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCe--------------EEEEEEHHHHhh-hhc--------CCCCHH
Confidence            578999999999999999 6899999977532  11              011899999963 211        234455


Q ss_pred             cccccc-CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          174 SHNIID-DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       174 sLG~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ++  .+ ++ +..++.+++..+|++.|++.  +...+||||.+|+++|-|+..||-.
T Consensus       147 dv--m~~~~-~~~V~~~~sl~eal~~m~~~--~~~~lpVVDe~G~lvGiVT~~DIl~  198 (450)
T TIGR01302       147 EV--MTREE-VITVPEGIDLEEALKVLHEH--RIEKLPVVDKNGELVGLITMKDIVK  198 (450)
T ss_pred             Hh--hCCCC-CEEECCCCcHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEhHHhhh
Confidence            43  34 36 89999999999999999886  4588999999999999999988854

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=96.66  E-value=0.0071  Score=61.35  Aligned_cols=104  Identities=18%  Similarity=0.319  Sum_probs=77.5

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|++++-|+++.|. ++...++|++..-+-               .=++|..|+.+.+...-.    .+..++.++
T Consensus       345 ~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~----~~~~~v~~i  405 (454)
T TIGR01137       345 PVTVHPTETVGDAIEILREYGFDQLPVVTEAGKV---------------LGSVTLRELLSALFAGKA----NPDDAVSKV  405 (454)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeE---------------EEEEEHHHHHHHHhccCC----CcCCCHHHh
Confidence            678999999999999998 577888887642111               118999999997765211    123355553


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                        .+++ +..|+.+++..++++.|.+.     ..+||+.+|+++|=|+..+|
T Consensus       406 --m~~~-~~~v~~~~~l~~a~~~~~~~-----~~~vV~~~g~liGvvt~~dl  449 (454)
T TIGR01137       406 --MSKK-FIQIGEGEKLSDLSKFLEKN-----SSAIVTEEGKPIGVVTKIDL  449 (454)
T ss_pred             --cCCC-CeEECCcCcHHHHHHHHHHC-----CeeEEEECCEEEEEEEHHHH
Confidence              5677 88999999999999999762     24667778999999998876

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=96.66  E-value=0.019  Score=60.01  Aligned_cols=107  Identities=17%  Similarity=0.149  Sum_probs=83.1

Q ss_pred             ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc---cccccc
Q 041297           14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC---PCFCSF   90 (379)
Q Consensus        14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la---~VS~li   90 (379)
                      -|-+++....|+++|++.+.+++...+||-+.                     ..+++|+|+.-|+.....   .|.++.
T Consensus        95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~---------------------~g~lvGiVt~~DL~~~~~~~~~V~dim  153 (486)
T PRK05567         95 TDPVTVTPDTTLAEALALMARYGISGVPVVDE---------------------NGKLVGIITNRDVRFETDLSQPVSEVM  153 (486)
T ss_pred             CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc---------------------CCEEEEEEEHHHhhhcccCCCcHHHHc
Confidence            46678888999999999999999999999872                     257999999999853221   155555


Q ss_pred             cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHH
Q 041297           91 AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL  158 (379)
Q Consensus        91 ~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl  158 (379)
                      .+  ..+..+.+++++.|+++.|. ++++.++|++...+-.               =++|.+||++++.
T Consensus       154 ~~--~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lv---------------GiIT~~DLl~~~~  205 (486)
T PRK05567        154 TK--ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLK---------------GLITVKDIEKAEE  205 (486)
T ss_pred             CC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEE---------------EEEEhHHhhhhhh
Confidence            31  35778999999999999999 6899988877543221               1899999999973

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.59  E-value=0.0026  Score=52.90  Aligned_cols=111  Identities=13%  Similarity=0.130  Sum_probs=74.3

Q ss_pred             cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------ccc
Q 041297           17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------CFC   88 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------VS~   88 (379)
                      +++....|+.+|++.+++.+...+||=+.                     .++++|+|+.-|++-.+..        |++
T Consensus         5 ~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---------------------~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~   63 (124)
T cd04608           5 VTVLPTVTCAEAIEILKEKGFDQLPVVDE---------------------SGKILGMVTLGNLLSSLSSGKVQPSDPVSK   63 (124)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcC---------------------CCCEEEEEEHHHHHHHHHHhccCCCCcHHH
Confidence            45677889999999999988888888763                     2469999999998853321        677


Q ss_pred             cccCCCCceEEeCCCCchhHHHHHHhcCccEEEE-ecCCcccCCCCCCcccccCCcceEEeeHHHHHHHH
Q 041297           89 SFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVI-LPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF  157 (379)
Q Consensus        89 li~~~~gll~~V~P~tsLLdAie~m~~G~~rllV-i~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFL  157 (379)
                      +..+   .+..++|++++.++.+.|.. -+-+.+ .+....+.+     ...+++.-.=++|+.|+++||
T Consensus        64 im~~---~~~~v~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~-----v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          64 ALYK---QFKRVNKNDTLGKLSRILET-DAFLLVFFEQISSAAI-----GKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             Hhhc---cceecCCCCCHHHHHhhccc-CCceEEEecccccccc-----ccccccceEEEEehhHhhhhC
Confidence            6653   36689999999999997764 222222 222111100     011122333399999999985

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.50  E-value=0.011  Score=62.15  Aligned_cols=109  Identities=13%  Similarity=0.116  Sum_probs=83.3

Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC---CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhcc
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE---GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDC  252 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d---GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~  252 (379)
                      |++ ++ ...++.++++.+|+++|++.  ..+.+||+|.+   |+++|-++..||...+..      ...+.|+|     
T Consensus       101 g~i-~d-pvtv~pd~tv~eA~~lm~~~--~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~------~~~V~diM-----  165 (495)
T PTZ00314        101 GFI-MD-PYVLSPNHTVADVLEIKEKK--GFSSILITVDGKVGGKLLGIVTSRDIDFVKDK------STPVSEVM-----  165 (495)
T ss_pred             ccc-cC-CeecCCCCCHHHHHHHHHHc--CCcEEEEEeCCccCCeEEEEEEHHHHhhcccC------CCCHHHhh-----
Confidence            444 44 67899999999999999875  55899999984   899999998887642210      00000110     


Q ss_pred             CCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcH
Q 041297          253 GRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSL  332 (379)
Q Consensus       253 ~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSL  332 (379)
                                                                                       ......++.++..+|
T Consensus       166 -----------------------------------------------------------------t~~~~lvtv~~~~sl  180 (495)
T PTZ00314        166 -----------------------------------------------------------------TPREKLVVGNTPISL  180 (495)
T ss_pred             -----------------------------------------------------------------CCcCCceEeCCCCCH
Confidence                                                                             111246888999999


Q ss_pred             HHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          333 MAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       333 vAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .+++..+..|+.+++=|+|+++.++|+|+...
T Consensus       181 ~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~D  212 (495)
T PTZ00314        181 EEANEVLRESRKGKLPIVNDNGELVALVSRSD  212 (495)
T ss_pred             HHHHHHHHHcCCCeEEEEcCCCcEEEEEEehH
Confidence            99999999999999999999999999998764

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.49  E-value=0.012  Score=62.04  Aligned_cols=105  Identities=16%  Similarity=0.277  Sum_probs=80.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceE-EeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYC-WLTQEDLIRYFLNFIGLLNPTPNQPIN  173 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC-~LTQeDVvRFLl~~ig~l~p~p~~SI~  173 (379)
                      ...+.|++++-||+++|. .+..+++|+++. ..+              ++. ++|..|+. |...        ...+|.
T Consensus       106 pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g--------------kLvGIVt~~DL~-~~~~--------~~~~V~  162 (495)
T PTZ00314        106 PYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG--------------KLLGIVTSRDID-FVKD--------KSTPVS  162 (495)
T ss_pred             CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC--------------eEEEEEEHHHHh-hccc--------CCCCHH
Confidence            468999999999999998 588888887652 111              111 89999985 3321        234455


Q ss_pred             ccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          174 SHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       174 sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ++  ..+  + +..++++++..+|++.|.+.  +...+||||.+|+++|=|+..||..
T Consensus       163 di--Mt~~~~-lvtv~~~~sl~eAl~lm~e~--~i~~LPVVd~~g~liGIIT~~DIl~  215 (495)
T PTZ00314        163 EV--MTPREK-LVVGNTPISLEEANEVLRES--RKGKLPIVNDNGELVALVSRSDLKK  215 (495)
T ss_pred             Hh--hCCcCC-ceEeCCCCCHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEehHhhh
Confidence            43  344  6 89999999999999999885  5589999999999999999988853

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.44  E-value=0.011  Score=46.61  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=74.3

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..++.+.+..+|++.|.+.  ....++|++. |+++|-++..+|..          .+...++    +.          
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~--~~~~i~V~~~-~~~~G~v~~~~l~~----------~~~~~~~----~~----------   55 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEH--RVSSLLVVDD-GRLVGIVTDRDLRN----------RVVAEGL----DP----------   55 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHc--CCCeEEEEEC-CEEEEEEEhHHHHH----------HHhccCC----Cc----------
Confidence            78899999999999999763  3478999998 99999998877642          0000000    00          


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             . .      .. .+.                  -...++++.+..+|..+|..+..+
T Consensus        56 -----------------------~-~------~i-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~   86 (111)
T cd04800          56 -----------------------D-T------PV-SEV------------------MTAPPITIPPDATVFEALLLMLER   86 (111)
T ss_pred             -----------------------c-C------CH-HHH------------------hCCCCeEECCCCcHHHHHHHHHHc
Confidence                                   0 0      00 000                  113467899999999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEe
Q 041297          343 RDRLRSMAKAENPNFCPVRI  362 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~  362 (379)
                      +.+++=|+|+ |.++|+++.
T Consensus        87 ~~~~~~Vv~~-~~~~Giit~  105 (111)
T cd04800          87 GIHHLPVVDD-GRLVGVISA  105 (111)
T ss_pred             CCCeeeEeEC-CEEEEEEEH
Confidence            9999999987 889999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.43  E-value=0.0046  Score=40.59  Aligned_cols=41  Identities=12%  Similarity=0.012  Sum_probs=37.9

Q ss_pred             ceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          323 AIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       323 ~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ++++.+..++.+++.++..++.++++|+|+++..+|++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~   42 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRR   42 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHH
Confidence            57889999999999999999999999999999999999864

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.42  E-value=0.012  Score=61.85  Aligned_cols=102  Identities=16%  Similarity=0.223  Sum_probs=77.1

Q ss_pred             eEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      ...+.|++++-||++.|.+ +...++|++++ +-               .=++|+.|+. +.        + ...+|+++
T Consensus        98 pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~g-kl---------------vGIVT~rDL~-~~--------~-~~~~V~dI  151 (475)
T TIGR01303        98 PITLAPHDTVSDAMALIHKRAHGAAVVILED-RP---------------VGLVTDSDLL-GV--------D-RFTQVRDI  151 (475)
T ss_pred             CeEECCCCCHHHHHHHHHhcCCeEEEEEECC-EE---------------EEEEEHHHhh-cC--------C-CCCCHHHH
Confidence            4579999999999999984 56555556532 11               1189999972 21        1 12446654


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                        .+++ +..++.+++..+|+++|.+.  +...+||||.+|+++|-|+..||..
T Consensus       152 --Mt~~-litv~~~~sL~eAl~lM~~~--~i~~LPVVD~~g~LvGIIT~~DLl~  200 (475)
T TIGR01303       152 --MSTD-LVTAPADTEPRKAFDLLEHA--PRDVAPLVDADGTLAGILTRTGALR  200 (475)
T ss_pred             --ccCC-ceEeCCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHH
Confidence              4567 99999999999999999986  4478999999999999999888753

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.28  E-value=0.0098  Score=50.99  Aligned_cols=91  Identities=21%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------c--
Q 041297           16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------C--   86 (379)
Q Consensus        16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------V--   86 (379)
                      -+++....|+.+|++.+..++...+||-+.                     .++++|+|+.-|++-++..       +  
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---------------------~g~l~Givt~~Dl~~~~~~~~~~~~~~~~   61 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDS---------------------DDFLEGILTLGDIQRFLFTNKTTRVQPED   61 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCEEEEECC---------------------CCeEEEEEEHHHHHHHHhhccccccccch
Confidence            356778899999999999999888999873                     2469999999998876653       1  


Q ss_pred             ----------cccccC------CCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCc
Q 041297           87 ----------FCSFAK------DSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGI  127 (379)
Q Consensus        87 ----------S~li~~------~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~  127 (379)
                                +++..+      -...+..+.|+++|.||++.|. ++++++.|+++..
T Consensus        62 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          62 ETKQTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             hhcccccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence                      112211      0123778999999999999999 6999999987643

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=96.12  E-value=0.0089  Score=59.04  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=93.7

Q ss_pred             hcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHh
Q 041297          161 IGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIAT  240 (379)
Q Consensus       161 ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~at  240 (379)
                      +...-.+|..++.++  +.++ .+++..+++.-+|.+++.+-  ...+.||||.| |+||=|+.+|...       |+|.
T Consensus       163 i~~m~siPk~~V~~~--~s~~-~i~v~~d~tl~eaak~f~~~--~i~GaPVvd~d-k~vGiit~~dI~~-------aia~  229 (294)
T COG2524         163 ISKMVSIPKEKVKNL--MSKK-LITVRPDDTLREAAKLFYEK--GIRGAPVVDDD-KIVGIITLSDIAK-------AIAN  229 (294)
T ss_pred             EeeeeecCcchhhhh--ccCC-ceEecCCccHHHHHHHHHHc--CccCCceecCC-ceEEEEEHHHHHH-------HHHc
Confidence            566677889998887  4677 99999999999999988664  45899999988 9999998776533       2221


Q ss_pred             cchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCC
Q 041297          241 LLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHR  320 (379)
Q Consensus       241 LSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~  320 (379)
                         |++-++|+.                         .                                        =+
T Consensus       230 ---g~~~~kV~~-------------------------~----------------------------------------M~  241 (294)
T COG2524         230 ---GNLDAKVSD-------------------------Y----------------------------------------MR  241 (294)
T ss_pred             ---CCccccHHH-------------------------H----------------------------------------hc
Confidence               222222221                         0                                        12


Q ss_pred             ccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297          321 SEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRI  362 (379)
Q Consensus       321 ~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~  362 (379)
                      +.++|-+-.-.+.++|.-|..|.|+|+-|||++|..+|++.=
T Consensus       242 k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITr  283 (294)
T COG2524         242 KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITR  283 (294)
T ss_pred             cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEeh
Confidence            347888888899999999999999999999999999999864

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=96.10  E-value=0.0081  Score=49.48  Aligned_cols=70  Identities=23%  Similarity=0.436  Sum_probs=55.7

Q ss_pred             HHHHhhhcccCCCCC----CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          155 RYFLNFIGLLNPTPN----QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       155 RFLl~~ig~l~p~p~----~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      +|+++.+|.=.|-..    .++.++  ..++ +..+..+++..+|++.|.+.  ....+||||.+|+++|-|+..+|.+
T Consensus        39 ~~vl~~~~~~~p~ll~~v~~~v~di--m~~~-~~~v~~~~~l~~a~~~~~~~--~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          39 RYVLEYLGIEPPILLADVHPRVRDV--INRK-PVTARPNDPLREALNLMHEH--NIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             HHHHHHcCCCCchhhcchhhhHHHh--cCCC-CCEECCcCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHhhc
Confidence            899998887555332    345553  3456 88899999999999999875  4578999999999999999988864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=95.97  E-value=0.02  Score=46.05  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=73.4

Q ss_pred             ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecccccccccCCCC
Q 041297           16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCFCSFAKDSG   95 (379)
Q Consensus        16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~VS~li~~~~g   95 (379)
                      -..+....+++++.+.+.+.+...+||=+...                  -.++++|+|+.-|+..+...   +..   .
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~------------------~~~~~~G~v~~~dl~~~~~~---~m~---~   59 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE------------------ESPRLVGYILRSQLVVALKN---YID---P   59 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCC------------------CCCEEEEEEeHHHHHHHHHH---hcc---C
Confidence            34567788999999999888777788866210                  02579999999998765543   222   2


Q ss_pred             ceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           96 IVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        96 ll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                      ....+++++++.++++.|. +|.+.++|++++ ..                 -++|+.|+++|
T Consensus        60 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~-----------------Gvvt~~dl~~~  105 (105)
T cd04591          60 SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLV-----------------GIITRKDLLKA  105 (105)
T ss_pred             CCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEE-----------------EEEEhhhhhcC
Confidence            3567899999999999998 789888887432 12                 28888888775

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=95.96  E-value=0.031  Score=57.19  Aligned_cols=114  Identities=13%  Similarity=0.045  Sum_probs=84.2

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |.++.-+- .-+..+++++++-|+++.|. +|..|+.|.+....+.        ..      +++..|+++++.+     
T Consensus       193 v~diMtpr-~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~i--------vG------iv~~kDll~~~~~-----  252 (408)
T TIGR03520       193 TKQVMRPR-LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNI--------TG------VLYIKDLLPHLNK-----  252 (408)
T ss_pred             eeeeCCch-HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCce--------EE------EEEHHHHHhHhcc-----
Confidence            56665321 34889999999999999999 7999999977554441        11      8899999987642     


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      .   ...   +.-+-++ ++.|+.++++.++++.|++.  +..-..|||..|.++|=++..|+-
T Consensus       253 ~---~~~---l~~~~~~-~~~Vpe~~~l~~ll~~m~~~--~~~~aiVvDE~G~~~GiVT~eDil  307 (408)
T TIGR03520       253 K---NFD---WQSLLRE-PYFVPENKKLDDLLRDFQEK--KNHLAIVVDEYGGTSGLVTLEDII  307 (408)
T ss_pred             C---CCC---HHHHcCC-CeEeCCCCcHHHHHHHHHhc--CceEEEEEcCCCCEEEEEEHHHHH
Confidence            1   112   2223456 78999999999999999985  446667788889888888888773

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=95.94  E-value=0.029  Score=56.77  Aligned_cols=99  Identities=18%  Similarity=0.176  Sum_probs=71.3

Q ss_pred             EeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccccc
Q 041297           99 HLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNI  177 (379)
Q Consensus        99 ~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~  177 (379)
                      ...++.+.-++++.|. ++...++|++..-+               -.-|++.+++.+|+... +        ++.+  .
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~g~~~~~~~~~~~~~~-~--------~~~~--~  307 (363)
T TIGR01186       254 TKTADKGPRSALQLMRDERVDSLYVVDRQNK---------------LVGVVDVESIKQARKKA-Q--------GLQD--V  307 (363)
T ss_pred             eecCCCCHHHHHHHHHhcCCceEEEEcCCCC---------------EEEEEeHHHHHHHhhcC-C--------chhh--h
Confidence            3456667788888887 57777777653221               12299999999988642 2        1222  1


Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      +.++ +..|+.+++..+++++|...   ...+||||++|+++|.|+..+|
T Consensus       308 ~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~g~i~~~~~  353 (363)
T TIGR01186       308 LIDD-IYTVDAGTLLRETVRKVLKA---GIKVPVVDEDQRLVGIVTRGSL  353 (363)
T ss_pred             hccC-CceECCCCcHHHHHHHHHhC---CCCEEEECCCCcEEEEEEHHHH
Confidence            3455 77899999999999999764   3349999999999999987765

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=95.92  E-value=0.027  Score=57.82  Aligned_cols=98  Identities=23%  Similarity=0.248  Sum_probs=71.5

Q ss_pred             eCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccccc
Q 041297          100 LKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNII  178 (379)
Q Consensus       100 V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I  178 (379)
                      ..++...-+|++.|. .|...++|++...+-               .-|+|.+|+.++..+.         .++.+  ++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~g~~~~~~~~~~~~~~---------~~~~~--~~  343 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKF---------------VGAVSIDSLKTALTQQ---------QGLDA--AL  343 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcE---------------EEEEeHHHHHhhhhcC---------Cchhh--hh
Confidence            345567778888887 678888886543221               1299999998887531         12222  24


Q ss_pred             cCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          179 DDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       179 ~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      .++ +..|..+++..++++++..   ....+||||++|+++|.|+..+|
T Consensus       344 ~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~g~~~~~~~  388 (400)
T PRK10070        344 IDA-PLAVDAQTPLSELLSHVGQ---APCAVPVVDEDQQYVGIISKGML  388 (400)
T ss_pred             ccC-CceeCCCCCHHHHHHHHHh---CCCcEEEECCCCcEEEEEEHHHH
Confidence            566 7889999999999998866   34569999999999999987766

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=95.88  E-value=0.026  Score=55.40  Aligned_cols=118  Identities=11%  Similarity=0.139  Sum_probs=83.8

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      .+++.++=-=..+ +.+++.+++..++++.+++.  ..+-+||++.+ ++++|=++..||...                 
T Consensus        66 ~~~V~diMtpr~~-i~~l~~~~sl~e~~~~i~~~--~~sr~PV~~~~~d~iiGiv~~kDll~~-----------------  125 (292)
T PRK15094         66 DQRVRDIMIPRSQ-MITLKRNQTLDECLDVIIES--AHSRFPVISEDKDHIEGILMAKDLLPF-----------------  125 (292)
T ss_pred             CCEEeEEccchHH-EEEEeCCCCHHHHHHHHHhc--CCcEEEEecCCCCcEEEEEEHHHHHhH-----------------
Confidence            4444443222236 99999999999999999876  44889999987 699999988777420                 


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                        ...+.++..+                                      ++.                 .  +.+++-.
T Consensus       126 --~~~~~~~~~l--------------------------------------~~l-----------------~--r~~~~V~  146 (292)
T PRK15094        126 --MRSDAEAFSM--------------------------------------DKV-----------------L--RQAVVVP  146 (292)
T ss_pred             --hhccCCcCCH--------------------------------------HHH-----------------c--CCCcCcC
Confidence              0000000000                                      000                 0  1245677


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      +..+|..++.++..++.|.+=|+|+.|...|+|..+--
T Consensus       147 e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDI  184 (292)
T PRK15094        147 ESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDI  184 (292)
T ss_pred             CCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHH
Confidence            78899999999999999999999999999999987643

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.69  E-value=0.086  Score=41.42  Aligned_cols=99  Identities=15%  Similarity=0.133  Sum_probs=73.4

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      +..+..+.+..+|+..|.+.  ..+.++|++.+|+++|-++..+|.....                  +.  +   +   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~g~v~~~~l~~~~~------------------~~--~---~---   54 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEY--KVSGVPVVKKSGELVGIITRKDLLRNPE------------------EE--Q---L---   54 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEHHHHHhccc------------------cc--h---H---
Confidence            77888899999999999764  3367999999999999998777643100                  00  0   0   


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                             +..                              -...+++..+..+|.+++..+..+
T Consensus        55 -----------------------~~~------------------------------~~~~~~~v~~~~~l~~~~~~~~~~   81 (106)
T cd04638          55 -----------------------ALL------------------------------MTRDPPTVSPDDDVKEAAKLMVEN   81 (106)
T ss_pred             -----------------------HHH------------------------------hcCCCceECCCCCHHHHHHHHHHc
Confidence                                   000                              012356778889999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEee
Q 041297          343 RDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.+++=|+|. |.++|+++..
T Consensus        82 ~~~~~~Vvd~-~~~~G~it~~  101 (106)
T cd04638          82 NIRRVPVVDD-GKLVGIVTVA  101 (106)
T ss_pred             CCCEEEEEEC-CEEEEEEEHH
Confidence            9999999995 7889999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=95.48  E-value=0.08  Score=54.21  Aligned_cols=120  Identities=17%  Similarity=0.209  Sum_probs=92.4

Q ss_pred             ccccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------
Q 041297           12 HWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------   85 (379)
Q Consensus        12 ~~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------   85 (379)
                      .|-+-+.+++..++.+|+..+...++.++||=..++.                     -+|+.+..|+. |+++      
T Consensus       235 ~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~---------------------~v~~~s~~Dv~-~l~~~~~~~~  292 (381)
T KOG1764|consen  235 TWSNIASISEDTPVIEALKIMSERRISALPVVDENGK---------------------KVGNYSRFDVI-HLAREGTYNN  292 (381)
T ss_pred             hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCc---------------------eecceehhhhh-hhhhcCccCc
Confidence            5777788999999999999999999999999885542                     38999999975 4442      


Q ss_pred             -----ccccccCC---CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           86 -----CFCSFAKD---SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        86 -----VS~li~~~---~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                           ++....+-   -+-+.+..|+.||-+.|+.|. ..+||+.|+++..+-               +=.+|=.||+.|
T Consensus       293 ~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l---------------~GvvSLsDil~~  357 (381)
T KOG1764|consen  293 LDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVL---------------VGVISLSDILSY  357 (381)
T ss_pred             cchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcE---------------EEEeeHHHHHHH
Confidence                 44444332   223999999999999999999 799999998873221               118899999999


Q ss_pred             HHhhhcccCCCC
Q 041297          157 FLNFIGLLNPTP  168 (379)
Q Consensus       157 Ll~~ig~l~p~p  168 (379)
                      +.-+-....|-+
T Consensus       358 l~~~p~~~~~~~  369 (381)
T KOG1764|consen  358 LVLTPSGGTPDA  369 (381)
T ss_pred             HHhCccCCCCCC
Confidence            988754444433

>PRK11573 hypothetical protein; Provisional

Probab=95.24  E-value=0.064  Score=55.14  Aligned_cols=144  Identities=8%  Similarity=0.015  Sum_probs=98.1

Q ss_pred             ccccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----c
Q 041297           12 HWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----C   86 (379)
Q Consensus        12 ~~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----V   86 (379)
                      ++.|=.+++...|++++++.+++++-+-+||+..+                    ..+++|+|..=|++.++.+     .
T Consensus       195 Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~--------------------~D~IiGiv~~kDll~~~~~~~~~~~  254 (413)
T PRK11573        195 PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS--------------------LDDAISMLRVREAYRLMTEKKEFTK  254 (413)
T ss_pred             ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC--------------------CCceEEEEEHHHHHHHhhccCcCCH
Confidence            45577788899999999999999999999998732                    2469999999999876542     1


Q ss_pred             cccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-cc
Q 041297           87 FCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-LL  164 (379)
Q Consensus        87 S~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~l  164 (379)
                      .++..-. -....|..++++.+.++.|. ++.|=++|+++...-         ..      .+|.|||+.-+.|-|. ++
T Consensus       255 ~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~---------~G------iVTleDilEeivGei~de~  318 (413)
T PRK11573        255 ENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI---------QG------LVTVEDILEEIVGDFTTSM  318 (413)
T ss_pred             HHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCe---------EE------EeeHHHHHHHHhCCCCccc
Confidence            1221111 23577999999999999999 566777778763321         11      9999999999998763 33


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcH
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFA  195 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~A  195 (379)
                      .+-....+..   +..+ .+-|+...+.-+.
T Consensus       319 d~~~~~~i~~---~~~~-~~~v~G~~~l~d~  345 (413)
T PRK11573        319 SPTLAEEVTP---QNDG-SVIIDGTANVREI  345 (413)
T ss_pred             CcccccceEE---ecCC-EEEEEeeeEHHHH
Confidence            2211111211   1233 5666666665443

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=94.83  E-value=0.088  Score=53.51  Aligned_cols=101  Identities=11%  Similarity=0.150  Sum_probs=70.2

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------c
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------C   86 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------V   86 (379)
                      +-+++....|+.+|++.+.+++...+||-+.                     ..+++|+|+.-|+...+.+        |
T Consensus       344 ~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---------------------~~~~~Givt~~dl~~~~~~~~~~~~~~v  402 (454)
T TIGR01137       344 APVTVHPTETVGDAIEILREYGFDQLPVVTE---------------------AGKVLGSVTLRELLSALFAGKANPDDAV  402 (454)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---------------------CCeEEEEEEHHHHHHHHhccCCCcCCCH
Confidence            3456666777888887777777667777542                     3579999999998864431        5


Q ss_pred             cccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHH
Q 041297           87 FCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF  157 (379)
Q Consensus        87 S~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFL  157 (379)
                      .++..   ..+..|+|++++.|+++.|.+. +.++|.+++ ..-                 ++|+.||+++|
T Consensus       403 ~~im~---~~~~~v~~~~~l~~a~~~~~~~-~~~vV~~~g~liG-----------------vvt~~dll~~l  453 (454)
T TIGR01137       403 SKVMS---KKFIQIGEGEKLSDLSKFLEKN-SSAIVTEEGKPIG-----------------VVTKIDLLSFL  453 (454)
T ss_pred             HHhcC---CCCeEECCcCcHHHHHHHHHHC-CeeEEEECCEEEE-----------------EEEHHHHHHhh
Confidence            55543   2356799999999999999863 334444421 122                 99999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=94.82  E-value=0.12  Score=40.92  Aligned_cols=88  Identities=19%  Similarity=0.220  Sum_probs=71.5

Q ss_pred             ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------c
Q 041297           14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------C   86 (379)
Q Consensus        14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------V   86 (379)
                      .+-+++....|+.+|+..+.+.+...+||=+-                      .+++|+++.-||+.++..       +
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----------------------~~l~Giit~~di~~~~~~~~~~~~~v   64 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD----------------------GKLVGIITERDILRALAAGGKRLLPV   64 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----------------------CEEEEEEEHHHHHHHHhccCCccccH
Confidence            34567788899999999999999888888662                      279999999999998873       2


Q ss_pred             cccccCCCCceEEeCCCCchhHHHHHHhc--CccEEEEecCC
Q 041297           87 FCSFAKDSGIVRHLKPSASLLEAVDLLLG--GVQNLVILPAG  126 (379)
Q Consensus        87 S~li~~~~gll~~V~P~tsLLdAie~m~~--G~~rllVi~s~  126 (379)
                      ..+..   ..+..+.|++++.++++.|.+  ++.++.|++..
T Consensus        65 ~~v~~---~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~  103 (117)
T COG0517          65 KEVMT---KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDD  103 (117)
T ss_pred             HHhcc---CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC
Confidence            33333   257899999999999999997  79999997654

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=94.20  E-value=0.2  Score=50.82  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=84.5

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      |-++.....|+.||.+-|.+.+.-++||-+-                     ..+.+|+|+--|.+-+--.         
T Consensus       254 dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~---------------------~~rl~GiVt~~dl~~~a~~~p~qrlr~~  312 (382)
T COG3448         254 DVVTVSTDTSIDHARKLLQEHRIKALPVLDE---------------------HRRLVGIVTQRDLLKHARPSPFQRLRFL  312 (382)
T ss_pred             cceecCCcCChHHHHHHHHHcCccccccccc---------------------ccceeeeeeHHHHhhccCcchHHHhhcc
Confidence            5677788899999999999999999999872                     3579999999998874431         


Q ss_pred             ----ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhh
Q 041297           86 ----CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNF  160 (379)
Q Consensus        86 ----VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~  160 (379)
                          |-.+..   ..+.++.|.|+..|.+-++. .|-|.+.|++...|-.+               .+||.|++--|...
T Consensus       313 ~~~~vk~imt---~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvG---------------IvsQtDliaal~r~  374 (382)
T COG3448         313 RPPTVKGIMT---TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVG---------------IVSQTDLIAALYRN  374 (382)
T ss_pred             CCCccccccc---CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEE---------------EeeHHHHHHHHHHH
Confidence                333332   45899999999999999999 57777777887655422               89999999877653

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=94.07  E-value=0.23  Score=51.11  Aligned_cols=113  Identities=15%  Similarity=0.051  Sum_probs=89.2

Q ss_pred             cccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccccc-cccc
Q 041297           13 WCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCF-CSFA   91 (379)
Q Consensus        13 ~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~VS-~li~   91 (379)
                      +-|=++++...|++++...+++++-+-+||.+ ..                   ...+||+|..=|++.++.+-- ....
T Consensus       215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~-------------------~D~iiGiv~~Kdll~~~~~~~~~~~~  274 (429)
T COG1253         215 RTDIVALDLTDTVEELIELILESGHSRIPVYD-GD-------------------LDNIIGIVHVKDLLRALLDGQSDLDL  274 (429)
T ss_pred             cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CC-------------------CCcEEEEEEHHHHHHHHhcCccccch
Confidence            55667788899999999999999999999999 32                   347999999999999888421 1222


Q ss_pred             C-CCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297           92 K-DSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG  162 (379)
Q Consensus        92 ~-~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig  162 (379)
                      + .-.....|.+.+++.++++.|. +..|=++|+++-  ...                 ++|.|||+.-+.|-|.
T Consensus       275 ~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~G-----------------lVTleDIiEeIvGei~  332 (429)
T COG1253         275 RVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEG-----------------LVTLEDIIEEIVGEIP  332 (429)
T ss_pred             hhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEE-----------------EeEHHHHHHHHhCCCc
Confidence            1 1115788999999999999999 578878888864  233                 9999999999988554

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=94.07  E-value=0.13  Score=55.50  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=78.8

Q ss_pred             ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------cc
Q 041297           16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------CF   87 (379)
Q Consensus        16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------VS   87 (379)
                      -+++.-.+|+.||...+++.++.++-+-..++                     .-.|+|+-=|..-.+-.        ||
T Consensus       159 ~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~---------------------~~~GIvT~~dl~~~v~~~g~~~~~~V~  217 (610)
T COG2905         159 AVTVSPQASIQDAARKMKDEGVSSLVVLDDSG---------------------PLLGIVTRKDLRSRVIADGRSKTQKVS  217 (610)
T ss_pred             CcccCccCcHHHHHHHHHhcCCCeEEEEcCCC---------------------CccceeehHHHHHHHHhcCCCcccchh
Confidence            35666778999999999999988666666433                     35689988887765442        77


Q ss_pred             ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecC-CcccCCCCCCcccccCCcceEEeeHHHHHHHHH
Q 041297           88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPA-GIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL  158 (379)
Q Consensus        88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s-~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl  158 (379)
                      .+.-   +++++|++++=+.|||=+|+ +++|||+|.+. +.-.                 +||-.||+|-+-
T Consensus       218 evmT---~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~G-----------------ilt~~dIl~l~s  270 (610)
T COG2905         218 EVMT---SPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLG-----------------ILTLTDILRLFS  270 (610)
T ss_pred             hhhc---cCceeecCcchHHHHHHHHHHhCCceeeeecCCeeeE-----------------EeeHHHHHHhhC
Confidence            7665   67999999999999999999 89999999554 3333                 777788877664

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=94.06  E-value=0.34  Score=49.17  Aligned_cols=107  Identities=13%  Similarity=0.090  Sum_probs=75.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL  262 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~  262 (379)
                      ......+.++.++++.|...  ......|+|.++++.|.++..++..                   |...+++       
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~-------------------~~~~~~~-------  303 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDE--RVDSLYVVDRQNKLVGVVDVESIKQ-------------------ARKKAQG-------  303 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhc--CCceEEEEcCCCCEEEEEeHHHHHH-------------------HhhcCCc-------
Confidence            34556677888999999765  4478899999999999998766543                   1111000       


Q ss_pred             HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297          263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR  342 (379)
Q Consensus       263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH  342 (379)
                                               .         ++.                  -.....+-.+..+|.+++..++.|
T Consensus       304 -------------------------~---------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~  331 (363)
T TIGR01186       304 -------------------------L---------QDV------------------LIDDIYTVDAGTLLRETVRKVLKA  331 (363)
T ss_pred             -------------------------h---------hhh------------------hccCCceECCCCcHHHHHHHHHhC
Confidence                                     0         000                  001123457889999999999999


Q ss_pred             CCcEEEEeeCCCCcccceEeehhhHHHH
Q 041297          343 RDRLRSMAKAENPNFCPVRIQAKKQQLS  370 (379)
Q Consensus       343 RV~~vWVvd~e~~l~~~v~~~~~~~~~~  370 (379)
                      ... +-|+|++|.++|+|.-+.--+.|.
T Consensus       332 ~~~-~~v~~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       332 GIK-VPVVDEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             CCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            999 999999999999998765544443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=93.53  E-value=0.074  Score=49.61  Aligned_cols=69  Identities=14%  Similarity=0.316  Sum_probs=54.2

Q ss_pred             eHHHHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          149 TQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       149 TQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      |---|+|+|.+|-+       .-|.-=.+-+.+ |+++.+++..++|+++|+..  .-+-+||++. ||+||.|+-.++.
T Consensus        49 t~k~Il~aL~e~e~-------~~ita~~iM~sp-vv~v~pdDsi~~vv~lM~~~--g~SQlPVi~~-~k~VGsItE~~iv  117 (187)
T COG3620          49 TVKRILEALEEAEK-------TRITAKTIMHSP-VVSVSPDDSISDVVNLMRDK--GISQLPVIEE-DKVVGSITENDIV  117 (187)
T ss_pred             HHHHHHHHHHHhhc-------ceEeHhhhccCC-eeEECchhhHHHHHHHHHHc--CCccCceeeC-CeeeeeecHHHHH
Confidence            45568888888766       222223346778 99999999999999999986  4488999998 9999999866653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=93.26  E-value=0.73  Score=47.44  Aligned_cols=101  Identities=9%  Similarity=0.035  Sum_probs=70.8

Q ss_pred             EecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHH
Q 041297          186 IHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQ  265 (379)
Q Consensus       186 V~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~  265 (379)
                      ...+.+.-+|++.|...  ....+.|||.+|+++|.++..+|..                   +.+.+.+.++       
T Consensus       290 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~-------------------~~~~~~~~~~-------  341 (400)
T PRK10070        290 KTPGFGPRSALKLLQDE--DREYGYVIERGNKFVGAVSIDSLKT-------------------ALTQQQGLDA-------  341 (400)
T ss_pred             cCCCCCHHHHHHHHHhc--CCceEEEEcCCCcEEEEEeHHHHHh-------------------hhhcCCchhh-------
Confidence            34666788899999775  4578999999999999998777643                   0010000000       


Q ss_pred             HhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCc
Q 041297          266 RLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDR  345 (379)
Q Consensus       266 ~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~  345 (379)
                                  .                                        -..+..+-.+..+|.+++..++.+...
T Consensus       342 ------------~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (400)
T PRK10070        342 ------------A----------------------------------------LIDAPLAVDAQTPLSELLSHVGQAPCA  369 (400)
T ss_pred             ------------h----------------------------------------hccCCceeCCCCCHHHHHHHHHhCCCc
Confidence                        0                                        001124566788999999999997766


Q ss_pred             EEEEeeCCCCcccceEeehhhH
Q 041297          346 LRSMAKAENPNFCPVRIQAKKQ  367 (379)
Q Consensus       346 ~vWVvd~e~~l~~~v~~~~~~~  367 (379)
                       +.|||++|.++|+|+...--+
T Consensus       370 -~~v~~~~~~~~g~~~~~~~~~  390 (400)
T PRK10070        370 -VPVVDEDQQYVGIISKGMLLR  390 (400)
T ss_pred             -EEEECCCCcEEEEEEHHHHHH
Confidence             999999999999998654333

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=90.05  E-value=1.4  Score=47.96  Aligned_cols=160  Identities=18%  Similarity=0.287  Sum_probs=98.2

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      ..+|+|.+|+-||-..|. .|+--++|++...+.          .+     ++|+.|+.++.+-..-   |. ..+|++ 
T Consensus       159 ~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~----------~G-----IvT~~dl~~~v~~~g~---~~-~~~V~e-  218 (610)
T COG2905         159 AVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPL----------LG-----IVTRKDLRSRVIADGR---SK-TQKVSE-  218 (610)
T ss_pred             CcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCc----------cc-----eeehHHHHHHHHhcCC---Cc-ccchhh-
Confidence            578999999999988888 799966667743322          01     9999999999876322   00 122222 


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC---c----------HHHHHHHH---
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC---D----------ETVAAAIA---  239 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C---D----------et~a~A~a---  239 (379)
                       +-..+ +++|++++.+-+|+=+|.+-  ...=+||.+ ||+++|=++.+|+-.-   +          .+....++   
T Consensus       219 -vmT~p-~~svd~~~~~feAml~m~r~--~I~hl~V~e-~gq~~Gilt~~dIl~l~s~~~~vl~~~i~~a~sI~el~~~~  293 (610)
T COG2905         219 -VMTSP-VISVDRGDFLFEAMLMMLRN--RIKHLPVTE-DGQPLGILTLTDILRLFSQNSIVLVKRIARASSIEELANTA  293 (610)
T ss_pred             -hhccC-ceeecCcchHHHHHHHHHHh--CCceeeeec-CCeeeEEeeHHHHHHhhCCCceeehHHhhhhhhHHHHHHHH
Confidence             23445 99999999999998888653  456777664 7889998888775211   1          01111111   


Q ss_pred             hcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhcc
Q 041297          240 TLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDD  282 (379)
Q Consensus       240 tLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~  282 (379)
                      .+=.--+...++.|-+++.+.+++-+ +.++-.+..+++...+
T Consensus       294 e~~~~~~s~L~~~gv~~~~i~~lit~-i~d~lv~r~leL~~~~  335 (610)
T COG2905         294 ELLDDSLSTLVSRGVRTEFISELITE-INDQLVQRALELVEPE  335 (610)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHHHHHHhhhh
Confidence            11111233345666688888777542 3333334444555444

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=89.86  E-value=0.41  Score=31.03  Aligned_cols=44  Identities=27%  Similarity=0.433  Sum_probs=36.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +..+..+++..+++..|++.  ....++|++++|+++|=++..+|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~g~i~~~~l~   45 (49)
T smart00116        2 VVTVSPDTTLEEALELLREH--GIRRLPVVDEEGRLVGIVTRRDII   45 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHh--CCCcccEECCCCeEEEEEEHHHHH
Confidence            46678899999999999765  447899999999999999876663

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=86.62  E-value=1.6  Score=40.97  Aligned_cols=105  Identities=23%  Similarity=0.389  Sum_probs=75.2

Q ss_pred             CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcc
Q 041297           94 SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPI  172 (379)
Q Consensus        94 ~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI  172 (379)
                      ...+.++.|.-|+.+++++|- +|+--+.|+++. |-++               =+|.-||+|-+++.-        .+|
T Consensus        72 ~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~-k~VG---------------sItE~~iv~~~le~~--------e~i  127 (187)
T COG3620          72 HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEED-KVVG---------------SITENDIVRALLEGM--------ESI  127 (187)
T ss_pred             cCCeeEECchhhHHHHHHHHHHcCCccCceeeCC-eeee---------------eecHHHHHHHHhccc--------cch
Confidence            367899999999999999999 799999998762 1111               367789999998753        344


Q ss_pred             ccccccc--CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          173 NSHNIID--DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       173 ~sLG~I~--~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      .+|-.-.  .+.+-.|..+.+.    ..+.+.+....||=|+ .+|++||=|.-+|.
T Consensus       128 ~~~~vr~vM~e~fP~Vs~~~~l----~vI~~LL~~~~AVlV~-e~G~~vGIITk~DI  179 (187)
T COG3620         128 RSLRVREVMGEPFPTVSPDESL----NVISQLLEEHPAVLVV-ENGKVVGIITKADI  179 (187)
T ss_pred             hhhhHHHHhcCCCCcCCCCCCH----HHHHHHHhhCCeEEEE-eCCceEEEEeHHHH
Confidence            4444322  3315556666664    4556656677899998 89999999876554

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=83.86  E-value=1.6  Score=35.78  Aligned_cols=42  Identities=7%  Similarity=0.059  Sum_probs=38.3

Q ss_pred             cceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          322 EAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       322 ~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ++.+..+..+|.+++..+..++...+=|+|++|.++|+|+..
T Consensus        67 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~  108 (113)
T cd04597          67 KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLL  108 (113)
T ss_pred             CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence            467889999999999999999999999999999999999865

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-06
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-04

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 14/128 (10%)

Query: 97  VRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR 155
              + PS  L EA   +L      + ++                H +     LTQ  +++
Sbjct: 124 TASIHPSRPLFEACLKMLESRSGRIPLI----------DQDEETHREIVVSVLTQYRILK 173

Query: 156 YFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE 215
           +              PI   NII    + +     P    I ++ Q  +  +SV I+DE 
Sbjct: 174 FVALNCRE-THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV--SSVPIIDEN 230

Query: 216 GRLVGDIS 223
           G L+    
Sbjct: 231 GYLINVYE 238

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 43/185 (23%)

Query: 64  DSAGCSCIGKVCMVDIITFLCPCFCSFAKDSGIVR--------------------HLKPS 103
           DS   S +G + + D I  L   + S       +                      + P+
Sbjct: 75  DSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPN 134

Query: 104 ASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCW--LTQEDLIRYFLNF 160
           ASL +AV  L+   +  L ++                  +S      LT + ++++   F
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVI----------------DPESGNTLYILTHKRILKFLKLF 178

Query: 161 IGLLNPTP--NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRL 218
           I         ++ +    I   A I  +    P   A+ +  Q  +  +++ +VDE+GR+
Sbjct: 179 ITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRV--SALPVVDEKGRV 236

Query: 219 VGDIS 223
           V   S
Sbjct: 237 VDIYS 241

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 19/126 (15%), Positives = 47/126 (37%), Gaps = 14/126 (11%)

Query: 99  HLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF 157
           ++ P  SL++A   +     + + ++           +     ++     LTQ  ++++ 
Sbjct: 121 YVHPMHSLMDACLAMSKSRARRIPLI----------DVDGETGSEMIVSVLTQYRILKFI 170

Query: 158 LNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGR 217
                        P+N   I   + +     +      I ++A+ +I  ++V IV+ EG 
Sbjct: 171 SMNCKET-AMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNI--SAVPIVNSEGT 227

Query: 218 LVGDIS 223
           L+    
Sbjct: 228 LLNVYE 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.89
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.83
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.81
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.77
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.76
3ddj_A	296	CBS domain-containing protein; structural genomics	99.74
3ddj_A	296	CBS domain-containing protein; structural genomics	99.27
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.22
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.11
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.1
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.06
4esy_A	170	CBS domain containing membrane protein; structural	99.06
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.98
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.9
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.74
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.72
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.71
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.7
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.69
4esy_A	170	CBS domain containing membrane protein; structural	98.66
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.64
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.61
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.61
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.61
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.59
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.59
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.58
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.57
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.55
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.55
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.55
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.54
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.54
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.54
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.53
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.52
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.52
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.51
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.51
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.5
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.5
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.5
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.49
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.49
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.48
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.47
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.47
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.47
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.47
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.47
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.47
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.47
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.46
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.45
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.45
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.45
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.44
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.43
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.43
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.43
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.43
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.43
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.42
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.4
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.4
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.4
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.39
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.39
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.38
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.37
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.37
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.36
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.35
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.34
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.31
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.31
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.31
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.3
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.29
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.29
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.27
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.26
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.25
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.24
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.24
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.24
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.23
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.22
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.2
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.2
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.18
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.15
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.07
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.05
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.98
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	97.94
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.83
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.81
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.69
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.63
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.63
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.56
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.51
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.47
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.46
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.43
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.31
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.27
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.23
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.19
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.19
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.12
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.09
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.09
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	96.88
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	96.86
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.76
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.6
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.37
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	96.26
3fio_A	70	A cystathionine beta-synthase domain protein fused	96.03
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	95.96
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	95.91
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.87
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	95.77
3fio_A	70	A cystathionine beta-synthase domain protein fused	95.75
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	94.84
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	87.7

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.89  E-value=4.7e-23  Score=191.00  Aligned_cols=251  Identities=16%  Similarity=0.138  Sum_probs=185.8

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      +-++++...|+.+|++.|.+++...+|||+..                    .++++|++++-|++.++..         
T Consensus        41 ~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~--------------------~~~lvGilt~~Dl~~~l~~~~~~~~~~~  100 (323)
T 3t4n_C           41 RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK--------------------TSRFAGLLTTTDFINVIQYYFSNPDKFE  100 (323)
T ss_dssp             EEEEEETTSBHHHHHHHHHHTTCSCEEEEETT--------------------TTEEEEEECHHHHHHHHHHHHHCGGGGG
T ss_pred             cEEEEcCCCcHHHHHHHHHHcCCceEEEEeCC--------------------CCeEEEEEEHHHHHHHHHHHHcCcchhH
Confidence            34678889999999999999999999999832                    3589999999999987631         


Q ss_pred             ---------ccccc---cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHH
Q 041297           86 ---------CFCSF---AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQED  152 (379)
Q Consensus        86 ---------VS~li---~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeD  152 (379)
                               +.++.   ......+..+.|++++.||++.|. +|+++++|++...+.          ....-.-++|+.|
T Consensus       101 ~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~----------~~~~l~Givt~~d  170 (323)
T 3t4n_C          101 LVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET----------HREIVVSVLTQYR  170 (323)
T ss_dssp             GGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT----------CCEEEEEEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC----------CccceEEEecHHH
Confidence                     22222   111134788999999999999998 699999997753221          0001233999999


Q ss_pred             HHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcH
Q 041297          153 LIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDE  232 (379)
Q Consensus       153 VvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDe  232 (379)
                      +++|+.+.... ......+|.++++.-..++..|..++++.+|++.|.+.  +.+.+||||.+|+++|-||..||...-.
T Consensus       171 i~~~l~~~~~~-~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~--~~~~~pVvd~~~~~~Giit~~dl~~~~~  247 (323)
T 3t4n_C          171 ILKFVALNCRE-THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG--RVSSVPIIDENGYLINVYEAYDVLGLIK  247 (323)
T ss_dssp             HHHHHHHHCGG-GGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEETTHHHHHHH
T ss_pred             HHHHHHhcCCc-hhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEeHHHHHHHHh
Confidence            99999987765 45667899999876533399999999999999999875  5589999999999999999988854110


Q ss_pred             HHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCC
Q 041297          233 TVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGG  312 (379)
Q Consensus       233 t~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~  312 (379)
                      .........++.|+|                                      ...                        
T Consensus       248 ~~~~~~~~~~v~~~m--------------------------------------~~~------------------------  265 (323)
T 3t4n_C          248 GGIYNDLSLSVGEAL--------------------------------------MRR------------------------  265 (323)
T ss_dssp             TTHHHHTTSBHHHHG--------------------------------------GGS------------------------
T ss_pred             hchhhhccCCHHHHH--------------------------------------hhc------------------------
Confidence            000000111111111                                      000                        


Q ss_pred             CcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          313 YSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       313 ~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                          ......+++|.+..+|.+++.++..|+++++||+|++|.++|+|+..-
T Consensus       266 ----~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~D  313 (323)
T 3t4n_C          266 ----SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  313 (323)
T ss_dssp             ----CTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHH
T ss_pred             ----cccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHH
Confidence                001135799999999999999999999999999999999999998653

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.83  E-value=2.1e-20  Score=173.91  Aligned_cols=250  Identities=14%  Similarity=0.105  Sum_probs=181.0

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      +-+++....|+.+|++.|.+++...+|||+..                    .++++|+|++-|++.++..         
T Consensus        33 ~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~--------------------~~~~vGiv~~~Dl~~~~~~~~~~~~~~~   92 (334)
T 2qrd_G           33 RLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE--------------------ANKFAGLLTMADFVNVIKYYYQSSSFPE   92 (334)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHTCSCEEEEETT--------------------TTEEEEEECHHHHHHHHHHHHHHCSCGG
T ss_pred             CEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC--------------------CCeEEEEEEHHHHHHHHHHHhhccCCcc
Confidence            34678889999999999999999999999832                    2579999999999987631         


Q ss_pred             ---------cccc---c---cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEee
Q 041297           86 ---------CFCS---F---AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLT  149 (379)
Q Consensus        86 ---------VS~l---i---~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LT  149 (379)
                               ++.+   +   ...+.-+..+.|++++.||++.|. +|+++++|++...++          ++..-.-++|
T Consensus        93 ~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~----------~~~~~~Givt  162 (334)
T 2qrd_G           93 AIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET----------GSEMIVSVLT  162 (334)
T ss_dssp             GGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT----------TEEEEEEEEE
T ss_pred             HHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc----------CccceEEEee
Confidence                     1111   0   011122478999999999999998 799999997653211          0011234999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCccccccc-ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          150 QEDLIRYFLNFIGLLNPTPNQPINSHNI-IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       150 QeDVvRFLl~~ig~l~p~p~~SI~sLG~-I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ++|+++|+...+... .....++.+++. ..++ ++.|..+++..+|++.|.+.  ....+||||.+|+++|-|+..||.
T Consensus       163 ~~dl~~~~~~~~~~~-~~~~~~v~~l~~~m~~~-~~~v~~~~~~~~~~~~m~~~--~~~~~~Vvd~~~~~~Giit~~dl~  238 (334)
T 2qrd_G          163 QYRILKFISMNCKET-AMLRVPLNQMTIGTWSN-LATASMETKVYDVIKMLAEK--NISAVPIVNSEGTLLNVYESVDVM  238 (334)
T ss_dssp             HHHHHHHHHHHCGGG-GGCCCBGGGSSCSBCSS-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEETHHHH
T ss_pred             HHHHHHHHHhhccch-hhhhCcHHHhCCcccCC-ceEECCCCcHHHHHHHHHHc--CCcEEEEEcCCCcEEEEEEHHHHH
Confidence            999999998765544 234678899874 4566 99999999999999999876  458999999999999999988774


Q ss_pred             CCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcC
Q 041297          229 SCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSA  308 (379)
Q Consensus       229 ~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~  308 (379)
                      .       +++.   +.+   -+...|.                   .+.|.      ..       . +          
T Consensus       239 ~-------~~~~---~~~---~~~~~~v-------------------~~~m~------~~-------~-~----------  262 (334)
T 2qrd_G          239 H-------LIQD---GDY---SNLDLSV-------------------GEALL------KR-------P-A----------  262 (334)
T ss_dssp             H-------HHTT---SCG---GGGGSBH-------------------HHHHT------TC-------C-T----------
T ss_pred             H-------Hhhc---ccc---ccccCcH-------------------HHHHh------cc-------c-c----------
Confidence            3       1100   000   0000000                   00110      00       0 0          


Q ss_pred             CCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          309 RSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       309 r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                                ....+++|++..+|.+++.+|..|++++++|+|++|.++|+|+..-
T Consensus       263 ----------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~d  308 (334)
T 2qrd_G          263 ----------NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD  308 (334)
T ss_dssp             ----------TCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHH
T ss_pred             ----------cCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHH
Confidence                      0145789999999999999999999999999999999999999743

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.81  E-value=1e-19  Score=169.42  Aligned_cols=247  Identities=17%  Similarity=0.226  Sum_probs=183.2

Q ss_pred             cccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------
Q 041297           13 WCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------   85 (379)
Q Consensus        13 ~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------   85 (379)
                      -.+-+++....|+.+|++.+.+++...+|||+.+                    .++++|+|+.-|++.++..       
T Consensus        44 ~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~--------------------~~~~vGivt~~Dll~~l~~~~~~~~~  103 (330)
T 2v8q_E           44 SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK--------------------KQSFVGMLTITDFINILHRYYKSALV  103 (330)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT--------------------TTEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC--------------------CCeEEEEEEHHHHHHHHHHHHhcccc
Confidence            4456788899999999999999999999999843                    2479999999999986642       


Q ss_pred             -ccccc-----------cCC-CCceEEeCCCCchhHHHHHHh-cCccEEEEecC-CcccCCCCCCcccccCCcceEEeeH
Q 041297           86 -CFCSF-----------AKD-SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPA-GIKLQPKPSLKSTFHNDSEYCWLTQ  150 (379)
Q Consensus        86 -VS~li-----------~~~-~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s-~~k~~~~~s~~~~~~~~~~yC~LTQ  150 (379)
                       ..++-           +.. ...+..|.|++++.||++.|. +|+++++|++. ..+               -.-++|+
T Consensus       104 ~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~~Givt~  168 (330)
T 2v8q_E          104 QIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN---------------TLYILTH  168 (330)
T ss_dssp             TCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCC---------------EEEEECH
T ss_pred             chhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCc---------------EEEEEcH
Confidence             11110           010 134778999999999999998 69999999864 211               1239999


Q ss_pred             HHHHHHHHhhhcc--cCCCCCCccccccccc-CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          151 EDLIRYFLNFIGL--LNPTPNQPINSHNIID-DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       151 eDVvRFLl~~ig~--l~p~p~~SI~sLG~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      +|+++|+.+..+.  +..+...++.++.+.+ ++ +..+..+++..+|++.|.+.  ....+||||.+|+++|-|+..||
T Consensus       169 ~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~~~l~Giit~~dl  245 (330)
T 2v8q_E          169 KRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN-IAMVRTTTPVYVALGIFVQH--RVSALPVVDEKGRVVDIYSKFDV  245 (330)
T ss_dssp             HHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSS-CCCEETTCBHHHHHHHHHHH--CCSEEEEECTTSBEEEEEEGGGT
T ss_pred             HHHHHHHHHHhhccCchhhhcCCHHHhcccCcCC-ceEECCCCCHHHHHHHHHHc--CCCeEEEECCCCcEEEEEEHHHH
Confidence            9999999876543  2233467788887666 66 99999999999999999876  45899999999999999999998


Q ss_pred             CCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCc
Q 041297          228 NSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARS  307 (379)
Q Consensus       228 ~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~  307 (379)
                      ...-..........++.++                                +..      .                   
T Consensus       246 ~~~~~~~~~~~~~~~v~~~--------------------------------~~~------~-------------------  268 (330)
T 2v8q_E          246 INLAAEKTYNNLDVSVTKA--------------------------------LQH------R-------------------  268 (330)
T ss_dssp             GGGGGSSCCCCCSSBHHHH--------------------------------GGG------C-------------------
T ss_pred             HHHHhccccccccCcHHHH--------------------------------Hhc------c-------------------
Confidence            6521100000000000000                                000      0                   


Q ss_pred             CCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          308 ARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       308 ~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                               ..-...+++|.+..+|.+++.++..|++++++|+|++|.++|+|+..
T Consensus       269 ---------~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~  315 (330)
T 2v8q_E          269 ---------SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLS  315 (330)
T ss_dssp             ---------CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             ---------ccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHH
Confidence                     00124578999999999999999999999999999999999999974

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.77  E-value=4.2e-18  Score=153.81  Aligned_cols=257  Identities=17%  Similarity=0.155  Sum_probs=157.7

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--ccccccC
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCSFAK   92 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~li~~   92 (379)
                      +-+++....|+.+|++.+.+++...+||++.+                     ++++|+|+.-|++.++..  |.++..+
T Consensus        10 ~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~---------------------~~~~Giv~~~dl~~~~~~~~v~~~m~~   68 (282)
T 2yzq_A           10 NPVTITLPATRNYALELFKKYKVRSFPVVNKE---------------------GKLVGIISVKRILVNPDEEQLAMLVKR   68 (282)
T ss_dssp             SCCCEESSCC------------CCEEEEECTT---------------------CCEEEEEESSCC----------CCCBS
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC---------------------CcEEEEEEHHHHHhhhccCCHHHHcCC
Confidence            44677788999999999999999999999842                     469999999999988764  7777653


Q ss_pred             CCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH-HHHhhhcccCCCCCC
Q 041297           93 DSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR-YFLNFIGLLNPTPNQ  170 (379)
Q Consensus        93 ~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR-FLl~~ig~l~p~p~~  170 (379)
                         .+..+.|++++.||++.|. +|+++++|+++..+-               .=++|++|+++ ++.+. ..+   ...
T Consensus        69 ---~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~---------------~Giit~~di~~~~~~~~-~~~---~~~  126 (282)
T 2yzq_A           69 ---DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKP---------------VGILTVGDIIRRYFAKS-EKY---KGV  126 (282)
T ss_dssp             ---CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHTTTTC-SGG---GGC
T ss_pred             ---CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEE---------------EEEEEHHHHHHHHHhcc-CCc---ccC
Confidence               2568999999999999998 699999987653111               12899999999 87653 111   244


Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhh
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYM  250 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~v  250 (379)
                      ++.++  .+++ ++.++.+++..+|++.|.+.  ....+||||.+|+++|-|+..||....... .++.   .. +..+.
T Consensus       127 ~v~~~--m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~-~~~~---~~-~~~~~  196 (282)
T 2yzq_A          127 EIEPY--YQRY-VSIVWEGTPLKAALKALLLS--NSMALPVVDSEGNLVGIVDETDLLRDSEIV-RIMK---ST-ELAAS  196 (282)
T ss_dssp             BSTTT--SBSC-CCCEETTSBHHHHHHHHHTC--SSSEEEEECTTSCEEEEEEGGGGGGCGGGC-C--------------
T ss_pred             cHHHH--hCCC-CEEECCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHhhhhhhh-hhhc---cc-hhhhh
Confidence            55543  4667 89999999999999999875  457899999999999999999997421100 0000   00 00000


Q ss_pred             ccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCC
Q 041297          251 DCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWS  330 (379)
Q Consensus       251 d~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~S  330 (379)
                      +     +  ..++-.    ....   ..         +   +  .. ...     ..    ....+.--...+++|+|..
T Consensus       197 ~-----~--~~~~~~----~~~~---~~---------~---~--~~-~~~-----~~----~~~v~~im~~~~~~v~~~~  238 (282)
T 2yzq_A          197 S-----E--EEWILE----SHPT---LL---------F---E--KF-ELQ-----LP----NKPVAEIMTRDVIVATPHM  238 (282)
T ss_dssp             --------------------------------------------------------C----CCBGGGTCBSSCCCBCTTS
T ss_pred             h-----h--hhhhcc----cchH---HH---------H---h--Hh-hhh-----hc----cCCHHHhcCCCCceeCCCC
Confidence            0     0  000000    0000   00         0   0  00 000     00    0001111124679999999


Q ss_pred             cHHHHHHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297          331 SLMAVIMQALARRDRLRSMAKAENPNFCPVRI  362 (379)
Q Consensus       331 SLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~  362 (379)
                      +|.+++..|..|++++++|+|++|.++|+|+.
T Consensus       239 ~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~  270 (282)
T 2yzq_A          239 TVHEVALKMAKYSIEQLPVIRGEGDLIGLIRD  270 (282)
T ss_dssp             BHHHHHHHHHHHTCSEEEEEETTTEEEEEEEH
T ss_pred             CHHHHHHHHHHcCcceeEEECCCCCEEEEEeH
Confidence            99999999999999999999999999999995

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.76  E-value=9.6e-18  Score=150.52  Aligned_cols=238  Identities=16%  Similarity=0.168  Sum_probs=174.8

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      +-+++....|+.+|++.+.+++...+||++.+                    .++++|+++.-||+-++..         
T Consensus        13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~--------------------~~~~~Givt~~di~~~~~~~~~~~~~~~   72 (280)
T 3kh5_A           13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNAG--------------------NNKVVGIITSMDIVDFMGGGSKYNLIRE   72 (280)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTT--------------------TCBEEEEEEHHHHHHHTTTSGGGHHHHT
T ss_pred             CcEEECCCCcHHHHHHHHHhCCCcEeeEEECC--------------------CCeEEEEEEHHHHHHHhcccchhhhhhh
Confidence            67889999999999999999999999999841                    2569999999999988742         


Q ss_pred             -------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHH
Q 041297           86 -------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQE  151 (379)
Q Consensus        86 -------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQe  151 (379)
                                   |+++..+   .+..+.+++++.||++.|. +|+++++|++...+-               .=++|++
T Consensus        73 ~~~~~~~~~~~~~v~~im~~---~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~  134 (280)
T 3kh5_A           73 KHERNFLAAINEPVREIMEE---NVITLKENADIDEAIETFLTKNVGGAPIVNDENQL---------------ISLITER  134 (280)
T ss_dssp             TSTTCHHHHTTSBGGGTSBC---SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBE---------------EEEEEHH
T ss_pred             ccccchhHHhhhhHHHhcCC---CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEE---------------EEEEEHH
Confidence                         4444432   3678999999999999998 699999998643211               1299999


Q ss_pred             HHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCc
Q 041297          152 DLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCD  231 (379)
Q Consensus       152 DVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CD  231 (379)
                      |+++++.+.+..     ..++.++  .+++ +..++.+++..+|++.|++.  ....+||| .+|+++|-|+..||...-
T Consensus       135 dl~~~~~~~~~~-----~~~v~~~--m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv-~~~~~~Givt~~dl~~~~  203 (280)
T 3kh5_A          135 DVIRALLDKIDE-----NEVIDDY--ITRD-VIVATPGERLKDVARTMVRN--GFRRLPVV-SEGRLVGIITSTDFIKLL  203 (280)
T ss_dssp             HHHHHHGGGSCT-----TCBSGGG--CBCS-CCCBCTTCBHHHHHHHHHHH--TCSEEEEE-ETTEEEEEEEHHHHHHHH
T ss_pred             HHHHHHhhcCCC-----CCCHHHH--hCCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEE-ECCEEEEEEEHHHHHHHH
Confidence            999999775431     2345443  4567 89999999999999999886  45899999 789999999988764310


Q ss_pred             HHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCC
Q 041297          232 ETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSG  311 (379)
Q Consensus       232 et~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~  311 (379)
                                ..+...                 ..+......   +.. +      .+      . ++            
T Consensus       204 ----------~~~~~~-----------------~~~~~~~~~---~~~-~------~~------v-~~------------  227 (280)
T 3kh5_A          204 ----------GSDWAF-----------------NHMQTGNVR---EIT-N------VR------M-EE------------  227 (280)
T ss_dssp             ----------TSHHHH-----------------HHHHSCCTH---HHH-H------CB------H-HH------------
T ss_pred             ----------hhhhhh-----------------hhhcccchh---hhh-C------Cc------H-HH------------
Confidence                      000000                 000000000   000 0      00      0 00            


Q ss_pred             CCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          312 GYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       312 ~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                            --+..+++|.+..+|.+++.++..|++++++|+|++|.++|+|+..
T Consensus       228 ------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~  273 (280)
T 3kh5_A          228 ------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEK  273 (280)
T ss_dssp             ------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHH
T ss_pred             ------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHH
Confidence                  0124578999999999999999999999999999999999999864

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.74  E-value=1.2e-17  Score=152.91  Aligned_cols=237  Identities=10%  Similarity=0.081  Sum_probs=176.3

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      +-+++....|+.+|++.|.+++...+||++  +                     +++|+++.-||+-++..         
T Consensus        29 ~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d--~---------------------~l~GivT~~Di~~~~~~~~~~~~~~~   85 (296)
T 3ddj_A           29 NPPILSKEDRLGSAFKKINEGGIGRIIVAN--E---------------------KIEGLLTTRDLLSTVESYCKDSCSQG   85 (296)
T ss_dssp             SCCEECTTSBHHHHHHHTTGGGCCEEEEES--S---------------------SEEEEEEHHHHHGGGTTCC---CCHH
T ss_pred             CCcEECCCccHHHHHHHHHHCCCceEEEEC--C---------------------eEEEEEeHHHHHHHhcccccccccch
Confidence            457788999999999999999999999998  2                     48999999999998841         


Q ss_pred             ---------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH
Q 041297           86 ---------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR  155 (379)
Q Consensus        86 ---------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR  155 (379)
                               |+++..+   .+..+.|++++.||++.|. +|+++++|+++..+-               .-++|+.|+++
T Consensus        86 ~~~~~~~~~v~~im~~---~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l---------------vGivt~~dl~~  147 (296)
T 3ddj_A           86 DLYHISTTPIIDYMTP---NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKP---------------VGIVTEREFLL  147 (296)
T ss_dssp             HHHHHHTSBGGGTSEE---SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHGG
T ss_pred             hhHHHhcccHHHhccC---CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEEeHHHHHH
Confidence                     5555532   2568999999999999999 699999998643211               12999999999


Q ss_pred             HHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHH
Q 041297          156 YFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVA  235 (379)
Q Consensus       156 FLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a  235 (379)
                      ++.+..      ...++.++  .+++ +..+..+++..+|++.|.+.  ....+||||.+|+++|-|+..||...-.   
T Consensus       148 ~~~~~~------~~~~v~~~--m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~~~---  213 (296)
T 3ddj_A          148 LYKDLD------EIFPVKVF--MSTK-VQTIYKEVRLDQAVKLMLRR--GFRRLPVIDDDNKVVGIVTVVNAIKQLA---  213 (296)
T ss_dssp             GGGGSC------CCCBHHHH--SBCS-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHHHH---
T ss_pred             hhhccc------ccccHHHh--hcCC-CeEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCEEEEEEEHHHHHHHHH---
Confidence            875432      23455554  3466 89999999999999999886  4589999999999999999887743110   


Q ss_pred             HHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcc
Q 041297          236 AAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSA  315 (379)
Q Consensus       236 ~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~  315 (379)
                      ..+..+..             +                    ...     . .+      . .+                
T Consensus       214 ~~~~~~~~-------------~--------------------~~~-----~-~~------v-~~----------------  231 (296)
T 3ddj_A          214 KAVDKLDP-------------D--------------------YFY-----G-KV------V-KD----------------  231 (296)
T ss_dssp             HHHHHTCT-------------H--------------------HHH-----T-CB------H-HH----------------
T ss_pred             HHHhhcCh-------------h--------------------hhc-----C-cC------H-HH----------------
Confidence            00100000             0                    000     0 00      0 00                


Q ss_pred             cccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehhhHHHH
Q 041297          316 RVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQLS  370 (379)
Q Consensus       316 ~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~~~~~  370 (379)
                        --...+++|.+..+|.+++.++..|++++++|+|++|.++|+|+..---+.+.
T Consensus       232 --~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~  284 (296)
T 3ddj_A          232 --VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH  284 (296)
T ss_dssp             --HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             --HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHH
Confidence              01135789999999999999999999999999999999999999755444443

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.27  E-value=4.7e-12  Score=115.79  Aligned_cols=171  Identities=14%  Similarity=0.136  Sum_probs=135.9

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFC   88 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~   88 (379)
                      +-+++....|+.+|+..+.+++...+||.+.                     .++++|+|+.-|++-++..      |++
T Consensus       102 ~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---------------------~~~lvGivt~~dl~~~~~~~~~~~~v~~  160 (296)
T 3ddj_A          102 NPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---------------------NDKPVGIVTEREFLLLYKDLDEIFPVKV  160 (296)
T ss_dssp             SCCCEETTSCHHHHHHHHHHHTCSEEEEECT---------------------TSCEEEEEEHHHHGGGGGGSCCCCBHHH
T ss_pred             CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---------------------CCcEEEEEeHHHHHHhhhcccccccHHH
Confidence            5577888899999999999999999999963                     2469999999999987763      666


Q ss_pred             cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC-
Q 041297           89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP-  166 (379)
Q Consensus        89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p-  166 (379)
                      +..   ..+..+.|++++.||++.|. +|+++++|++...+-               .-++|++|+++++.+.+..+.+ 
T Consensus       161 ~m~---~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~~~~~~  222 (296)
T 3ddj_A          161 FMS---TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKV---------------VGIVTVVNAIKQLAKAVDKLDPD  222 (296)
T ss_dssp             HSB---CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHHHHHHHHTCTH
T ss_pred             hhc---CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEE---------------EEEEEHHHHHHHHHHHHhhcChh
Confidence            664   23678999999999999998 699999998743211               1299999999999876654432 


Q ss_pred             -CCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          167 -TPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       167 -~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                       ....++.++  .+++ ++.|..+++..+|++.|.+.  +...+||||.+|+++|-||..||-.
T Consensus       223 ~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd~~g~~~Giit~~Dil~  281 (296)
T 3ddj_A          223 YFYGKVVKDV--MVTN-LVTIDELASVNRAAAEMIVK--RIGSLLILNKDNTIRGIITERDLLI  281 (296)
T ss_dssp             HHHTCBHHHH--SBCC-CCBCCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             hhcCcCHHHH--hCCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEcHHHHHH
Confidence             123344432  4566 89999999999999999876  4589999999999999999888743

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.22  E-value=1.3e-11  Score=110.58  Aligned_cols=168  Identities=15%  Similarity=0.143  Sum_probs=131.0

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------cc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------CF   87 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------VS   87 (379)
                      +-+++....|+.+|++.+.+++...+||.+.                     .++++|+|+.-|++-++.+       |.
T Consensus        93 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---------------------~~~~~Givt~~dl~~~~~~~~~~~~~v~  151 (280)
T 3kh5_A           93 NVITLKENADIDEAIETFLTKNVGGAPIVND---------------------ENQLISLITERDVIRALLDKIDENEVID  151 (280)
T ss_dssp             SCCCEETTCBHHHHHHHHHHTTCSEEEEECT---------------------TCBEEEEEEHHHHHHHHGGGSCTTCBSG
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---------------------CCEEEEEEEHHHHHHHHhhcCCCCCCHH
Confidence            5577888899999999999999999999973                     2469999999999987763       55


Q ss_pred             ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh--cc
Q 041297           88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI--GL  163 (379)
Q Consensus        88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i--g~  163 (379)
                      ++..   ..+..+.|++++.||++.|. +|.++++|++++ .-.                 ++|++|+++++....  ..
T Consensus       152 ~~m~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G-----------------ivt~~dl~~~~~~~~~~~~  211 (280)
T 3kh5_A          152 DYIT---RDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVG-----------------IITSTDFIKLLGSDWAFNH  211 (280)
T ss_dssp             GGCB---CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEE-----------------EEEHHHHHHHHTSHHHHHH
T ss_pred             HHhC---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEE-----------------EEEHHHHHHHHhhhhhhhh
Confidence            5543   23678999999999999999 699999998432 122                 999999999985421  00


Q ss_pred             -----cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          164 -----LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       164 -----l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                           +......++.++  .+++ ++.|..+++..+|++.|.+.  +...+||||.+|+++|-||..||-
T Consensus       212 ~~~~~~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd~~g~~~Givt~~dil  276 (280)
T 3kh5_A          212 MQTGNVREITNVRMEEI--MKRD-VITAKEGDKLKKIAEIMVTN--DIGALPVVDENLRIKGIITEKDVL  276 (280)
T ss_dssp             HHSCCTHHHHHCBHHHH--SBSS-CCCBCTTCBHHHHHHHHHHH--TCCEEEEECTTCBEEEEEEHHHHG
T ss_pred             hcccchhhhhCCcHHHH--hcCC-CEEECCCCCHHHHHHHHHHC--CCCEEEEECCCCeEEEEEeHHHHH
Confidence                 001123344443  3566 89999999999999999885  558999999999999999988874

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.11  E-value=2.3e-10  Score=105.83  Aligned_cols=174  Identities=13%  Similarity=0.111  Sum_probs=132.6

Q ss_pred             ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc----------
Q 041297           16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----------   85 (379)
Q Consensus        16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----------   85 (379)
                      -+++....|+.+|++.+.+++...+||-+..+..                .+.+++|+|+.-||+-++..          
T Consensus       124 ~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~----------------~~~~l~Givt~~di~~~l~~~~~~~~~~~~  187 (323)
T 3t4n_C          124 TASIHPSRPLFEACLKMLESRSGRIPLIDQDEET----------------HREIVVSVLTQYRILKFVALNCRETHFLKI  187 (323)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT----------------CCEEEEEEEEHHHHHHHHHHHCGGGGGCCS
T ss_pred             ceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC----------------CccceEEEecHHHHHHHHHhcCCchhhhhC
Confidence            4677888999999999999999999999854320                12359999999999987652          


Q ss_pred             -ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc
Q 041297           86 -CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL  163 (379)
Q Consensus        86 -VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~  163 (379)
                       |+++--.-..-+..+.|++++.||++.|. +|++++.|++...+-               .=++|+.|+++++.+....
T Consensus       188 ~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~---------------~Giit~~dl~~~~~~~~~~  252 (323)
T 3t4n_C          188 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL---------------INVYEAYDVLGLIKGGIYN  252 (323)
T ss_dssp             BGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEETTHHHHHHHTTHHH
T ss_pred             cHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeE---------------EEEEeHHHHHHHHhhchhh
Confidence             55551101123678999999999999999 699999998643221               1299999999999775421


Q ss_pred             cCCCCCCcccccccccC------CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          164 LNPTPNQPINSHNIIDD------AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       164 l~p~p~~SI~sLG~I~~------~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      .   ...++.++  .++      + ++.|..+++..+|++.|.+.  +...+||||.+|+++|-||..||-
T Consensus       253 ~---~~~~v~~~--m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~~~l~Giit~~Dil  315 (323)
T 3t4n_C          253 D---LSLSVGEA--LMRRSDDFEG-VYTCTKNDKLSTIMDNIRKA--RVHRFFVVDDVGRLVGVLTLSDIL  315 (323)
T ss_dssp             H---TTSBHHHH--GGGSCTTCCC-CEEECTTCBHHHHHHHHHHS--CCCEEEEECTTSBEEEEEEHHHHH
T ss_pred             h---ccCCHHHH--HhhccccCCC-CEEECCCCCHHHHHHHHHHh--CCCEEEEECCCCcEEEEEEHHHHH
Confidence            1   13344443  333      6 99999999999999999885  558999999999999999988773

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.10  E-value=1.3e-10  Score=104.65  Aligned_cols=169  Identities=17%  Similarity=0.164  Sum_probs=125.8

Q ss_pred             ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceee-eccc--------c
Q 041297           16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIIT-FLCP--------C   86 (379)
Q Consensus        16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~-~la~--------V   86 (379)
                      -+++....|+.+|+..+.+++...+||-+.+                     ++++|+|+.-||+- ++.+        |
T Consensus        70 ~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~---------------------~~~~Giit~~di~~~~~~~~~~~~~~~v  128 (282)
T 2yzq_A           70 VPVVKENDTLKKAAKLMLEYDYRRVVVVDSK---------------------GKPVGILTVGDIIRRYFAKSEKYKGVEI  128 (282)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------SCEEEEEEHHHHHHHTTTTCSGGGGCBS
T ss_pred             CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CEEEEEEEHHHHHHHHHhccCCcccCcH
Confidence            4667778999999999999999999998732                     46999999999998 7752        5


Q ss_pred             cccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHH------HHHHh
Q 041297           87 FCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLI------RYFLN  159 (379)
Q Consensus        87 S~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVv------RFLl~  159 (379)
                      +++..   ..++.+++++++.||++.|. +|+++++|++...+-               .=++|+.|++      +++..
T Consensus       129 ~~~m~---~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~---------------~Giit~~dl~~~~~~~~~~~~  190 (282)
T 2yzq_A          129 EPYYQ---RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNL---------------VGIVDETDLLRDSEIVRIMKS  190 (282)
T ss_dssp             TTTSB---SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCE---------------EEEEEGGGGGGCGGGCC----
T ss_pred             HHHhC---CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeE---------------EEEEEHHHHhhhhhhhhhhcc
Confidence            55553   33678999999999999999 589999887642211               1178888888      66531


Q ss_pred             hh----------------ccc----CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEE
Q 041297          160 FI----------------GLL----NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLV  219 (379)
Q Consensus       160 ~i----------------g~l----~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLI  219 (379)
                      +.                ..+    ......++.++  .+++ +..|..++++.+|++.|.+.  +...+||||.+|+++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~lv  265 (282)
T 2yzq_A          191 TELAASSEEEWILESHPTLLFEKFELQLPNKPVAEI--MTRD-VIVATPHMTVHEVALKMAKY--SIEQLPVIRGEGDLI  265 (282)
T ss_dssp             ----------------------------CCCBGGGT--CBSS-CCCBCTTSBHHHHHHHHHHH--TCSEEEEEETTTEEE
T ss_pred             chhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHh--cCCC-CceeCCCCCHHHHHHHHHHc--CcceeEEECCCCCEE
Confidence            00                000    11235566653  4577 99999999999999999876  558999999989999


Q ss_pred             eeeCccccC
Q 041297          220 GDISPFSLN  228 (379)
Q Consensus       220 GeISa~~L~  228 (379)
                      |-||..||-
T Consensus       266 Giit~~Dil  274 (282)
T 2yzq_A          266 GLIRDFDLL  274 (282)
T ss_dssp             EEEEHHHHG
T ss_pred             EEEeHHHHH
Confidence            999988874

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.06  E-value=6.9e-10  Score=103.19  Aligned_cols=196  Identities=11%  Similarity=0.094  Sum_probs=134.8

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc-
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL-  163 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~-  163 (379)
                      |+++..+. .-+..|++++++.||++.|. +|.+++.|+++...+              -+-++|..|+++++...... 
T Consensus        37 v~dim~p~-~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~--------------~vGivt~~Dll~~l~~~~~~~  101 (330)
T 2v8q_E           37 CYDLIPTS-SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS--------------FVGMLTITDFINILHRYYKSA  101 (330)
T ss_dssp             GGGGSCSE-EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTE--------------EEEEEEHHHHHHHHHHHHHHH
T ss_pred             HhhhccCC-CcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCe--------------EEEEEEHHHHHHHHHHHHhcc
Confidence            78887532 45889999999999999998 699999997653221              13499999999998764321 


Q ss_pred             ---cCCCCCCccccc-----ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC-CCcEEeeeCccccCCCcHHH
Q 041297          164 ---LNPTPNQPINSH-----NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE-EGRLVGDISPFSLNSCDETV  234 (379)
Q Consensus       164 ---l~p~p~~SI~sL-----G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~-dGkLIGeISa~~L~~CDet~  234 (379)
                         +..+...++.++     .+..++ +..|+.+++..+|++.|++.  ....+||||. +|+++|-|+..||..     
T Consensus       102 ~~~~~~l~~~~~~~~~~~~~~im~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~~Givt~~dl~~-----  173 (330)
T 2v8q_E          102 LVQIYELEEHKIETWREVYLQDSFKP-LVCISPNASLFDAVSSLIRN--KIHRLPVIDPESGNTLYILTHKRILK-----  173 (330)
T ss_dssp             TTTCCCGGGCBHHHHHHHHSSSSCCC-CCCBCTTSBHHHHHHHHHHH--TCSCEEEECTTTCCEEEEECHHHHHH-----
T ss_pred             ccchhHHhhccHHHHHHHHhhcccCC-ceEeCCCCCHHHHHHHHHHC--CCCeEEEEeCCCCcEEEEEcHHHHHH-----
Confidence               111112222222     123566 99999999999999999875  4578999999 899999998877642     


Q ss_pred             HHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCc
Q 041297          235 AAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYS  314 (379)
Q Consensus       235 a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S  314 (379)
                        ++.        .+... .|.+++                   +.       .+      - ++.     .        
T Consensus       174 --~~~--------~~~~~-~~~~~~-------------------~~-------~~------v-~~~-----~--------  196 (330)
T 2v8q_E          174 --FLK--------LFITE-FPKPEF-------------------MS-------KS------L-EEL-----Q--------  196 (330)
T ss_dssp             --HHH--------HHSCS-SSCCGG-------------------GG-------SB------H-HHH-----T--------
T ss_pred             --HHH--------HHhhc-cCchhh-------------------hc-------CC------H-HHh-----c--------
Confidence              000        00000 000000                   00       00      0 000     0        


Q ss_pred             ccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          315 ARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       315 ~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                        ......++++.+..++.+++..+..|+.+++.|+|++|.++|+|+..
T Consensus       197 --v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~  243 (330)
T 2v8q_E          197 --IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKF  243 (330)
T ss_dssp             --CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGG
T ss_pred             --ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHH
Confidence              00114578999999999999999999999999999999999999965

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.06  E-value=8.5e-10  Score=94.12  Aligned_cols=137  Identities=15%  Similarity=0.162  Sum_probs=89.7

Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhh
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAY  249 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~  249 (379)
                      .+|.++  -+++ +.+|..++++.+|+++|.+.  +.+++||||.+|+++|-||-.||...-..       ....+....
T Consensus        18 ~~V~di--M~~~-v~~v~~~~tl~~a~~~m~~~--~~~~~pVvd~~g~lvGiit~~Dll~~~~~-------~~~~~~~~~   85 (170)
T 4esy_A           18 VPIRDI--LTSP-VVTVREDDTLDAVAKTMLEH--QIGCAPVVDQNGHLVGIITESDFLRGSIP-------FWIYEASEI   85 (170)
T ss_dssp             SBGGGG--CCSC-CCCEETTSBHHHHHHHHHHT--TCSEEEEECTTSCEEEEEEGGGGGGGTCC-------TTHHHHHHH
T ss_pred             CCHHHh--cCCC-CcEECCcCcHHHHHHHHHHc--CCeEEEEEcCCccEEEEEEHHHHHHHHhh-------ccccchhhh
Confidence            445553  4677 99999999999999999986  56999999999999999999998542100       000000000


Q ss_pred             hccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCC
Q 041297          250 MDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPW  329 (379)
Q Consensus       250 vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~  329 (379)
                      .+...+...+.+                +....   ...                         ..+.--+..+++|+|.
T Consensus        86 ~~~~~~~~~~~~----------------~~~~~---~~~-------------------------~v~~im~~~~~tv~~~  121 (170)
T 4esy_A           86 LSRAIPAPEVEH----------------LFETG---RKL-------------------------TASAVMTQPVVTAAPE  121 (170)
T ss_dssp             HTTTSCHHHHHH----------------HHHHH---TTC-------------------------BHHHHCBCCSCCBCTT
T ss_pred             hhhccchhhHHh----------------hhccc---ccc-------------------------chhhhcccCcccCCcc
Confidence            111001111100                00000   000                         0000112457999999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          330 SSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       330 SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      .+|.+++..|..|+++|+.|+| +|.++|+|+..
T Consensus       122 ~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~  154 (170)
T 4esy_A          122 DSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRR  154 (170)
T ss_dssp             SBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHH
T ss_pred             hhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHH
Confidence            9999999999999999999999 68999999854

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.98  E-value=5.3e-10  Score=90.81  Aligned_cols=129  Identities=17%  Similarity=0.199  Sum_probs=91.0

Q ss_pred             CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      ..+++.+++++-..++..++.++++.+|++.|.+.  ..+.+||||.+|+++|-|+..+|...       +..   +.+ 
T Consensus         6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~-------~~~---~~~-   72 (144)
T 2nyc_A            6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG--RVSSVPIIDENGYLINVYEAYDVLGL-------IKG---GIY-   72 (144)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHHH-------HHT---C---
T ss_pred             hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHc--CcceeeEEcCCCcEEEEEcHHHHHHH-------hcc---ccc-
Confidence            36788898866644499999999999999999876  45899999999999999998887531       100   000 


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                        -....|..+                   .|.     . .+                            .....++++.
T Consensus        73 --~~~~~~v~~-------------------~m~-----~-~~----------------------------~~~~~~~~v~   97 (144)
T 2nyc_A           73 --NDLSLSVGE-------------------ALM-----R-RS----------------------------DDFEGVYTCT   97 (144)
T ss_dssp             ----CCSBHHH-------------------HHH-----H-CC----------------------------------CEEC
T ss_pred             --ccCCccHHH-------------------HHh-----c-Cc----------------------------cccCCCeEEC
Confidence              000000000                   010     0 00                            0013478999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +..+|.+++..+..++.+++.|+|++|.++|+|+..-
T Consensus        98 ~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~d  134 (144)
T 2nyc_A           98 KNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  134 (144)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             CCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHH
Confidence            9999999999999999999999999999999998754

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.90  E-value=3.5e-09  Score=98.32  Aligned_cols=171  Identities=13%  Similarity=0.087  Sum_probs=128.5

Q ss_pred             cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----------
Q 041297           17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----------   85 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----------   85 (379)
                      +++....|+.+|+..+.+++...+||-+..+..                ....++|+|+.-||+-++..           
T Consensus       120 ~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~----------------~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~  183 (334)
T 2qrd_G          120 IYVHPMHSLMDACLAMSKSRARRIPLIDVDGET----------------GSEMIVSVLTQYRILKFISMNCKETAMLRVP  183 (334)
T ss_dssp             CCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT----------------TEEEEEEEEEHHHHHHHHHHHCGGGGGCCCB
T ss_pred             eeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc----------------CccceEEEeeHHHHHHHHHhhccchhhhhCc
Confidence            788889999999999999999999998743210                01349999999999987751           


Q ss_pred             cccc--ccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297           86 CFCS--FAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG  162 (379)
Q Consensus        86 VS~l--i~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig  162 (379)
                      |+++  +-  ...+..+.|++++.||++.|. ++.++++|++...+-               .=++|..|+++++.+...
T Consensus       184 v~~l~~~m--~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~---------------~Giit~~dl~~~~~~~~~  246 (334)
T 2qrd_G          184 LNQMTIGT--WSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTL---------------LNVYESVDVMHLIQDGDY  246 (334)
T ss_dssp             GGGSSCSB--CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEETHHHHHHHTTSCG
T ss_pred             HHHhCCcc--cCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcE---------------EEEEEHHHHHHHhhcccc
Confidence            5553  11  123677999999999999999 689999988642211               129999999999876431


Q ss_pred             ccCCCCCCccccccccc------CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          163 LLNPTPNQPINSHNIID------DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       163 ~l~p~p~~SI~sLG~I~------~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      .   ....++.++  .+      ++ +..|+.+++..+|++.|.+.  +...+||||.+|+++|-||..||-
T Consensus       247 ~---~~~~~v~~~--m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~l~Giit~~dil  310 (334)
T 2qrd_G          247 S---NLDLSVGEA--LLKRPANFDG-VHTCRATDRLDGIFDAIKHS--RVHRLFVVDENLKLEGILSLADIL  310 (334)
T ss_dssp             G---GGGSBHHHH--HTTCCTTCCC-CCEECTTCBHHHHHHHHHHS--CCCEEEEECTTCBEEEEEEHHHHH
T ss_pred             c---cccCcHHHH--HhcccccCCC-CEEECCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEeHHHHH
Confidence            0   112333332  23      36 89999999999999999885  458899999999999999987763

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.74  E-value=1.1e-08  Score=86.17  Aligned_cols=137  Identities=16%  Similarity=0.164  Sum_probs=85.8

Q ss_pred             CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHH
Q 041297          181 AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLV  260 (379)
Q Consensus       181 ~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~  260 (379)
                      + +..|..++++.+|+++|.+.  ..+.+||||.+|+++|-|+..+|........   .......+......  .-+.+ 
T Consensus        15 ~-~~~v~~~~~l~~a~~~m~~~--~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~~--~~~~~-   85 (180)
T 3sl7_A           15 N-LHVVKPSTSVDDALELLVEK--KVTGLPVIDDNWTLVGVVSDYDLLALDSISG---RSQNDTNLFPDVDS--TWKTF-   85 (180)
T ss_dssp             G-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHTCC------------------------CCCSH-
T ss_pred             C-ceeeCCCCcHHHHHHHHHHc--CCCeEEEECCCCeEEEEEEHHHHHhhhhhcc---ccCCcccccccccc--hhhhh-
Confidence            5 88999999999999999886  5589999999999999999999976421000   00000001000000  00000 


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHH
Q 041297          261 RLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQAL  340 (379)
Q Consensus       261 ~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAl  340 (379)
                                  .....++...     .                       ....+.--+..++++.+..+|..++..+.
T Consensus        86 ------------~~~~~~~~~~-----~-----------------------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~  125 (180)
T 3sl7_A           86 ------------NELQKLISKT-----Y-----------------------GKVVGDLMTPSPLVVRDSTNLEDAARLLL  125 (180)
T ss_dssp             ------------HHHHHHHHTT-----T-----------------------TCBHHHHSEESCCCEETTSBHHHHHHHHT
T ss_pred             ------------HHHHHHHhcc-----c-----------------------cccHHHHhCCCceEeCCCCcHHHHHHHHH
Confidence                        0000000000     0                       00000001244789999999999999999


Q ss_pred             HcCCcEEEEeeCCCCcccceEeehhh
Q 041297          341 ARRDRLRSMAKAENPNFCPVRIQAKK  366 (379)
Q Consensus       341 aHRV~~vWVvd~e~~l~~~v~~~~~~  366 (379)
                      .|+++++.|+|++|.++|+|+..---
T Consensus       126 ~~~~~~lpVvd~~g~~vGiit~~dil  151 (180)
T 3sl7_A          126 ETKFRRLPVVDADGKLIGILTRGNVV  151 (180)
T ss_dssp             TSTTCEEEEECTTCBEEEEEEHHHHH
T ss_pred             HcCCCEEEEECCCCeEEEEEEHHHHH
Confidence            99999999999999999999975433

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.71  E-value=2e-08  Score=79.64  Aligned_cols=107  Identities=16%  Similarity=0.111  Sum_probs=83.6

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      .+++ +..++.+++..+|++.|.+.  ..+.+||+|.+|+++|-|+..+|...-       .           +..    
T Consensus         7 m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~G~vt~~dl~~~~-------~-----------~~~----   61 (122)
T 3kpb_A            7 LSKP-PITAHSNISIMEAAKILIKH--NINHLPIVDEHGKLVGIITSWDIAKAL-------A-----------QNK----   61 (122)
T ss_dssp             CCSC-CCCEETTSBHHHHHHHHHHH--TCSCEEEECTTSBEEEEECHHHHHHHH-------H-----------TTC----
T ss_pred             hCCC-CEEeCCCCcHHHHHHHHHHc--CCCeEEEECCCCCEEEEEEHHHHHHHH-------H-----------hcc----
Confidence            3456 88999999999999999886  558999999999999999887774410       0           000    


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                                               ..   .         .+.                  -...++++.+..+|.+++.
T Consensus        62 -------------------------~~---v---------~~~------------------~~~~~~~v~~~~~l~~~~~   86 (122)
T 3kpb_A           62 -------------------------KT---I---------EEI------------------MTRNVITAHEDEPVDHVAI   86 (122)
T ss_dssp             -------------------------CB---G---------GGT------------------SBSSCCCEETTSBHHHHHH
T ss_pred             -------------------------cC---H---------HHH------------------hcCCCeEECCCCCHHHHHH
Confidence                                     00   0         000                  1134689999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      ++..++.+++.|+|++|.++|+|+...
T Consensus        87 ~~~~~~~~~l~Vvd~~g~~~Givt~~d  113 (122)
T 3kpb_A           87 KMSKYNISGVPVVDDYRRVVGIVTSED  113 (122)
T ss_dssp             HHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             HHHHhCCCeEEEECCCCCEEEEEeHHH
Confidence            999999999999999999999998643

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.70  E-value=1.1e-08  Score=86.64  Aligned_cols=133  Identities=12%  Similarity=0.024  Sum_probs=91.4

Q ss_pred             HHHhhhcccCCCCCCccccccccc-CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHH
Q 041297          156 YFLNFIGLLNPTPNQPINSHNIID-DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETV  234 (379)
Q Consensus       156 FLl~~ig~l~p~p~~SI~sLG~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~  234 (379)
                      +....-..+..+...+|.++=--. .+ +..|..++++.+|++.|.+.  ..+.+||||.+|+++|-|+..+|...    
T Consensus        10 ~~~~~~~~~~~l~~~~v~dim~~~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~----   82 (165)
T 3fhm_A           10 HSSGRENLYFQGMATFVKDLLDRKGRD-VVTVGPDVSIGEAAGTLHAH--KIGAVVVTDADGVVLGIFTERDLVKA----   82 (165)
T ss_dssp             ------CCCCSSSSCBHHHHHHHHCSC-CCEECTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH----
T ss_pred             cccccchhhHhhhhcCHHHHhccCCCC-CeEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHHH----
Confidence            334444555556666666653211 35 89999999999999999876  55899999999999999988776431    


Q ss_pred             HHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCc
Q 041297          235 AAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYS  314 (379)
Q Consensus       235 a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S  314 (379)
                         +.                         .    ++..       ..   . .+      . .+.              
T Consensus        83 ---~~-------------------------~----~~~~-------~~---~-~~------v-~~~--------------   98 (165)
T 3fhm_A           83 ---VA-------------------------G----QGAA-------SL---Q-QS------V-SVA--------------   98 (165)
T ss_dssp             ---HH-------------------------H----HGGG-------GG---T-SB------G-GGT--------------
T ss_pred             ---HH-------------------------h----cCCc-------cc---c-CC------H-HHH--------------
Confidence               00                         0    0000       00   0 00      0 000              


Q ss_pred             ccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          315 ARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       315 ~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                          -...+++|.+..+|.+++..+..|+++++.|+|+ |.++|+|+...
T Consensus        99 ----m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~d  143 (165)
T 3fhm_A           99 ----MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGD  143 (165)
T ss_dssp             ----SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHH
T ss_pred             ----hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHH
Confidence                1135789999999999999999999999999999 99999999643

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.69  E-value=7e-09  Score=84.26  Aligned_cols=117  Identities=14%  Similarity=0.138  Sum_probs=86.9

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC-CCcHHHHHHHHhcchhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN-SCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~-~CDet~a~A~atLSAgdf~  247 (379)
                      ..++.++  .+++ +..++.++++.+|++.|.+.  ..+.+||||++|+++|-|+..+|. ..-                
T Consensus         6 ~~~v~~i--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~~~----------------   64 (138)
T 2yzi_A            6 KAPIKVY--MTKK-LLGVKPSTSVQEASRLMMEF--DVGSLVVINDDGNVVGFFTKSDIIRRVI----------------   64 (138)
T ss_dssp             TSBGGGT--CBCC-CCEECTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHHTT----------------
T ss_pred             hhhHHHH--hcCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEeHHHHHHHHH----------------
Confidence            4455553  4467 89999999999999999876  458999999999999999988873 210                


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                         ..+                  .           . ...+      . .+.                  -...++++.
T Consensus        65 ---~~~------------------~-----------~-~~~~------v-~~~------------------m~~~~~~v~   86 (138)
T 2yzi_A           65 ---VPG------------------L-----------P-YDIP------V-ERI------------------MTRNLITAN   86 (138)
T ss_dssp             ---TTC------------------C-----------C-TTSB------G-GGT------------------CBCSCCEEE
T ss_pred             ---hcC------------------C-----------c-ccCC------H-HHH------------------hhCCCeEEC
Confidence               000                  0           0 0000      0 000                  113578999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      +..+|.+++..+..|+++++ |+|++|.++|+|+...-
T Consensus        87 ~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~di  123 (138)
T 2yzi_A           87 VNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDL  123 (138)
T ss_dssp             TTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHH
T ss_pred             CCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHH
Confidence            99999999999999999999 99999999999996543

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.66  E-value=2.1e-08  Score=85.43  Aligned_cols=106  Identities=12%  Similarity=0.113  Sum_probs=84.9

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      +-+++....|+.+|++.|.+++...+||.+.+                     ++++|+|+.-||+-++..         
T Consensus        27 ~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~---------------------g~lvGiit~~Dll~~~~~~~~~~~~~~   85 (170)
T 4esy_A           27 PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN---------------------GHLVGIITESDFLRGSIPFWIYEASEI   85 (170)
T ss_dssp             CCCCEETTSBHHHHHHHHHHTTCSEEEEECTT---------------------SCEEEEEEGGGGGGGTCCTTHHHHHHH
T ss_pred             CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC---------------------ccEEEEEEHHHHHHHHhhccccchhhh
Confidence            55788899999999999999999999999732                     469999999999865542         


Q ss_pred             ---------------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCc
Q 041297           86 ---------------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDS  143 (379)
Q Consensus        86 ---------------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~  143 (379)
                                           |+++..   -.+.+|.|+++|.||+++|. +|+++++|++++ +-         .    
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~v~~im~---~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g-~l---------v----  148 (170)
T 4esy_A           86 LSRAIPAPEVEHLFETGRKLTASAVMT---QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDG-VP---------V----  148 (170)
T ss_dssp             HTTTSCHHHHHHHHHHHTTCBHHHHCB---CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETT-EE---------E----
T ss_pred             hhhccchhhHHhhhccccccchhhhcc---cCcccCCcchhHHHHHHHHHHcCCcEEEEEECC-EE---------E----
Confidence                                 222222   23678999999999999999 799999998742 11         1    


Q ss_pred             ceEEeeHHHHHHHHHhh
Q 041297          144 EYCWLTQEDLIRYFLNF  160 (379)
Q Consensus       144 ~yC~LTQeDVvRFLl~~  160 (379)
                        =++|+.||+|||+..
T Consensus       149 --Givt~~Dil~~l~~~  163 (170)
T 4esy_A          149 --GIVTRRDLLKLLLLE  163 (170)
T ss_dssp             --EEEEHHHHTTTSCCC
T ss_pred             --EEEEHHHHHHHHHhc
Confidence              199999999998654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.64  E-value=5.7e-08  Score=79.20  Aligned_cols=121  Identities=15%  Similarity=0.191  Sum_probs=84.4

Q ss_pred             CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHH
Q 041297          181 AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLV  260 (379)
Q Consensus       181 ~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~  260 (379)
                      + +..|..++++.+|++.|.+.  ..+.+||||.+|+++|-|+..+|......                 +.  ....+ 
T Consensus        16 ~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~-----------------~~--~~~~~-   72 (152)
T 4gqw_A           16 D-LHVVKPTTTVDEALELLVEN--RITGFPVIDEDWKLVGLVSDYDLLALDSG-----------------DS--TWKTF-   72 (152)
T ss_dssp             T-CCCBCTTSBHHHHHHHHHHT--TCSEEEEECTTCBEEEEEEHHHHTTCC-----------------------CCHHH-
T ss_pred             C-CeEECCCCcHHHHHHHHHHc--CCceEEEEeCCCeEEEEEEHHHHHHhhcc-----------------cC--cccch-
Confidence            6 88999999999999999886  55899999999999999999999763210                 00  00000 


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHH
Q 041297          261 RLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQAL  340 (379)
Q Consensus       261 ~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAl  340 (379)
                      ..    +     .   ..+...     .          +.     .        ...--...++++.+..+|.+++.++.
T Consensus        73 ~~----~-----~---~~~~~~-----~----------~~-----~--------v~~~m~~~~~~v~~~~~l~~a~~~~~  112 (152)
T 4gqw_A           73 NA----V-----Q---KLLSKT-----N----------GK-----L--------VGDLMTPAPLVVEEKTNLEDAAKILL  112 (152)
T ss_dssp             HH----H-----H---TC--------------------CC-----B--------HHHHSEESCCCEESSSBHHHHHHHHH
T ss_pred             HH----H-----H---HHHHHh-----c----------cc-----c--------HHHhcCCCceEECCCCcHHHHHHHHH
Confidence            00    0     0   000000     0          00     0        00001134689999999999999999


Q ss_pred             HcCCcEEEEeeCCCCcccceEeeh
Q 041297          341 ARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       341 aHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .|+++++.|+|++|.++|+|+...
T Consensus       113 ~~~~~~l~Vvd~~g~~~Giit~~d  136 (152)
T 4gqw_A          113 ETKYRRLPVVDSDGKLVGIITRGN  136 (152)
T ss_dssp             HSSCCEEEEECTTSBEEEEEEHHH
T ss_pred             HCCCCEEEEECCCCcEEEEEEHHH
Confidence            999999999999999999998754

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.61  E-value=1.6e-07  Score=77.69  Aligned_cols=115  Identities=16%  Similarity=0.047  Sum_probs=90.2

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++.-+. .-+..++|++++-||++.|. +|..+++|++....+              -.=++|..|+++++...-   
T Consensus        25 v~diM~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~--------------lvGivt~~dl~~~~~~~~---   86 (148)
T 3lv9_A           25 IREIMVPR-TDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDD--------------ILGFVHIRDLYNQKINEN---   86 (148)
T ss_dssp             GGGTSEET-TTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTS--------------EEEEEEHHHHHHHHHHHS---
T ss_pred             HHHccccH-HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCc--------------EEEEEEHHHHHHHHhcCC---
Confidence            67776431 23567999999999999999 689999887653111              011999999999987653   


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                          ..++.++=   ++ +..|..+++..+|++.|.+.  +...+||||.+|+++|-|+..||-
T Consensus        87 ----~~~v~~~m---~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~~~Giit~~dil  140 (148)
T 3lv9_A           87 ----KIELEEIL---RD-IIYISENLTIDKALERIRKE--KLQLAIVVDEYGGTSGVVTIEDIL  140 (148)
T ss_dssp             ----CCCGGGTC---BC-CEEEETTSBHHHHHHHHHHH--TCSEEEEECTTSSEEEEEEHHHHH
T ss_pred             ----CccHHHhc---CC-CeEECCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEEHHHHH
Confidence                45566543   56 89999999999999999886  458899999999999999988763

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.61  E-value=7e-08  Score=78.07  Aligned_cols=103  Identities=11%  Similarity=0.111  Sum_probs=81.2

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR  261 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~  261 (379)
                      +..+..++++.+|++.|++.  ..+.+||||.+ |+++|-|+..||...-.                  ... +      
T Consensus        15 ~~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~~vGivt~~dl~~~~~------------------~~~-~------   67 (127)
T 3nqr_A           15 MITLKRNQTLDECLDVIIES--AHSRFPVISEDKDHIEGILMAKDLLPFMR------------------SDA-E------   67 (127)
T ss_dssp             CCCEETTCCHHHHHHHHHHH--CCSEEEEESSSTTCEEEEEEGGGGGGGGS------------------TTC-C------
T ss_pred             eEEEcCCCCHHHHHHHHHhC--CCCEEEEEcCCCCcEEEEEEHHHHHHHHh------------------ccC-C------
Confidence            88999999999999999886  45899999998 89999999998865100                  000 0      


Q ss_pred             HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297          262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA  341 (379)
Q Consensus       262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla  341 (379)
                                              . .+      - .+.                +   +.++++.+..+|.+++..+..
T Consensus        68 ------------------------~-~~------v-~~~----------------m---~~~~~v~~~~~l~~a~~~m~~   96 (127)
T 3nqr_A           68 ------------------------A-FS------M-DKV----------------L---RTAVVVPESKRVDRMLKEFRS   96 (127)
T ss_dssp             ------------------------C-CC------H-HHH----------------C---BCCCEEETTCBHHHHHHHHHH
T ss_pred             ------------------------C-CC------H-HHH----------------c---CCCeEECCCCcHHHHHHHHHh
Confidence                                    0 00      0 000                1   226889999999999999999


Q ss_pred             cCCcEEEEeeCCCCcccceEee
Q 041297          342 RRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       342 HRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      |+.+++-|+|++|.++|+|+..
T Consensus        97 ~~~~~lpVvd~~g~~~Giit~~  118 (127)
T 3nqr_A           97 QRYHMAIVIDEFGGVSGLVTIE  118 (127)
T ss_dssp             TTCCEEEEECTTSCEEEEEEHH
T ss_pred             cCCeEEEEEeCCCCEEEEEEHH
Confidence            9999999999999999999864

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.61  E-value=4.1e-08  Score=79.73  Aligned_cols=117  Identities=10%  Similarity=0.087  Sum_probs=85.9

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      ..++.++=--+++ +.+++.++++.+|++.|++.  ..+.+||||.+ |+++|-|+..||...                 
T Consensus         5 ~~~v~~iM~~~~~-v~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~~~Givt~~dl~~~-----------------   64 (130)
T 3i8n_A            5 DVPVTQVMTPRPV-VFRVDATMTINEFLDKHKDT--PFSRPLVYSEQKDNIIGFVHRLELFKM-----------------   64 (130)
T ss_dssp             --CCTTTSCCBCC-CCEEETTSBHHHHHHHTTTC--SCSCCEEESSSTTCEEEECCHHHHHHH-----------------
T ss_pred             cCCHhhCCCcHHH-EEEEcCCCCHHHHHHHHHhC--CCCEEEEEeCCCCcEEEEEEHHHHHHH-----------------
Confidence            4455555323355 88999999999999999875  55899999997 899999988777441                 


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                        ...+.+                              . .+      - .+.                +   ++++++.
T Consensus        65 --~~~~~~------------------------------~-~~------v-~~~----------------m---~~~~~v~   85 (130)
T 3i8n_A           65 --QQSGSG------------------------------Q-KQ------L-GAV----------------M---RPIQVVL   85 (130)
T ss_dssp             --HHTTTT------------------------------T-SB------H-HHH----------------S---EECCEEE
T ss_pred             --HhcCCC------------------------------c-CC------H-HHH----------------h---cCCcCcC
Confidence              000000                              0 00      0 000                1   2368999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +..+|.+++..+..|+.+++-|+|++|.++|+|+..-
T Consensus        86 ~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~d  122 (130)
T 3i8n_A           86 NNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLED  122 (130)
T ss_dssp             TTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred             CCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHH
Confidence            9999999999999999999999999999999998643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.59  E-value=9.6e-08  Score=75.73  Aligned_cols=104  Identities=19%  Similarity=0.289  Sum_probs=83.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++.||++.|. ++.+.++|++...+-               .=++|+.|+++++.....        ++.++
T Consensus        11 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~G~vt~~dl~~~~~~~~~--------~v~~~   67 (122)
T 3kpb_A           11 PITAHSNISIMEAAKILIKHNINHLPIVDEHGKL---------------VGIITSWDIAKALAQNKK--------TIEEI   67 (122)
T ss_dssp             CCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBE---------------EEEECHHHHHHHHHTTCC--------BGGGT
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCE---------------EEEEEHHHHHHHHHhccc--------CHHHH
Confidence            567899999999999999 689999997642211               119999999999876322        45544


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..++.+++..+|++.|.+.  +...+||||.+|+++|-|+..||-
T Consensus        68 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~~g~~~Givt~~dl~  115 (122)
T 3kpb_A           68 --MTRN-VITAHEDEPVDHVAIKMSKY--NISGVPVVDDYRRVVGIVTSEDIS  115 (122)
T ss_dssp             --SBSS-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHH
T ss_pred             --hcCC-CeEECCCCCHHHHHHHHHHh--CCCeEEEECCCCCEEEEEeHHHHH
Confidence              3466 88999999999999999875  458999999999999999988763

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.59  E-value=1.9e-07  Score=76.38  Aligned_cols=109  Identities=20%  Similarity=0.223  Sum_probs=86.4

Q ss_pred             ceEEeCCCCchhHHHHHHh-cCccEEEEecCCc-ccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297           96 IVRHLKPSASLLEAVDLLL-GGVQNLVILPAGI-KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN  173 (379)
Q Consensus        96 ll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~-k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~  173 (379)
                      .+..+.|++++.||++.|. ++.++++|++... ++              -.=++|..|+++++.....     +..++.
T Consensus        14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~--------------~~Givt~~dl~~~~~~~~~-----~~~~v~   74 (141)
T 2rih_A           14 PPVSLPETATIREVATELAKNRVGLAVLTARDNPKR--------------PVAVVSERDILRAVAQRLD-----LDGPAM   74 (141)
T ss_dssp             CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEE--------------EEEEEEHHHHHHHHHTTCC-----TTSBSG
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcce--------------eEEEEEHHHHHHHHhcCCC-----CCCCHH
Confidence            3678999999999999999 5899999986532 11              0129999999999876421     245565


Q ss_pred             ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ++  .+++ +..|+.+ +..+|++.|.+.  +...+||||.+|+++|-|+..||-.
T Consensus        75 ~~--m~~~-~~~v~~~-~l~~a~~~m~~~--~~~~l~Vvd~~g~~~Giit~~dll~  124 (141)
T 2rih_A           75 PI--ANSP-ITVLDTD-PVHVAAEKMRRH--NIRHVVVVNKNGELVGVLSIRDLCF  124 (141)
T ss_dssp             GG--CBCC-CEEETTS-BHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHS
T ss_pred             HH--cCCC-CeEEcCC-CHHHHHHHHHHc--CCeEEEEEcCCCcEEEEEEHHHHHH
Confidence            53  3567 9999999 999999999886  4578999999999999999998855

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.58  E-value=1.6e-07  Score=75.77  Aligned_cols=116  Identities=13%  Similarity=0.086  Sum_probs=86.0

Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhh
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAY  249 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~  249 (379)
                      .++.++  .+++ +..+..+++..+|++.|.+.  ..+.+||+| +|+++|-|+..+|...       ++.        .
T Consensus         4 ~~v~~i--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd-~~~~~Givt~~dl~~~-------~~~--------~   62 (133)
T 2ef7_A            4 EIVKEY--MKTQ-VISVTKDAKLNDIAKVMTEK--NIGSVIVVD-GNKPVGIITERDIVKA-------IGK--------G   62 (133)
T ss_dssp             CBGGGT--SBCS-CCEEETTCBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHHH-------HHT--------T
T ss_pred             ccHHHh--ccCC-CEEECCCCcHHHHHHHHHhc--CCCEEEEEE-CCEEEEEEcHHHHHHH-------Hhc--------C
Confidence            344443  4566 89999999999999999876  458999999 9999999998877431       000        0


Q ss_pred             hccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCC
Q 041297          250 MDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPW  329 (379)
Q Consensus       250 vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~  329 (379)
                      .+.                                 . .+      . .+.                  -...+++|.+.
T Consensus        63 ~~~---------------------------------~-~~------v-~~~------------------~~~~~~~v~~~   83 (133)
T 2ef7_A           63 KSL---------------------------------E-TK------A-EEF------------------MTASLITIRED   83 (133)
T ss_dssp             CCT---------------------------------T-CB------G-GGT------------------SEECCCCEETT
T ss_pred             CCc---------------------------------c-cC------H-HHH------------------cCCCCEEECCC
Confidence            000                                 0 00      0 000                  11357899999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          330 SSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       330 SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      .+|.+++.++..++.+++.|+|++|.++|+|+..--
T Consensus        84 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dl  119 (133)
T 2ef7_A           84 SPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDI  119 (133)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence            999999999999999999999999999999997543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.55  E-value=5.6e-08  Score=83.83  Aligned_cols=118  Identities=9%  Similarity=0.015  Sum_probs=87.3

Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhh
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAY  249 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~  249 (379)
                      .++.++  .+++ +..|..+++..+|++.|.+.  ..+.+||+|.+|+++|-|+..+|...-.                 
T Consensus         9 ~~v~~i--m~~~-~~~v~~~~~l~ea~~~~~~~--~~~~~pVvd~~g~~vGivt~~dl~~~~~-----------------   66 (184)
T 1pvm_A            9 MRVEKI--MNSN-FKTVNWNTTVFDAVKIMNEN--HLYGLVVKDDNGNDVGLLSERSIIKRFI-----------------   66 (184)
T ss_dssp             CBGGGT--SBTT-CCEEETTCBHHHHHHHHHHH--TCCEEEEECTTSCEEEEEEHHHHHHHTG-----------------
T ss_pred             cCHHHh--cCCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEeHHHHHHHHh-----------------
Confidence            455553  4567 99999999999999999886  4589999999999999999888743100                 


Q ss_pred             hccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCC
Q 041297          250 MDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPW  329 (379)
Q Consensus       250 vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~  329 (379)
                       ..+                            ... ...+      . .+                  --+..++++.+.
T Consensus        67 -~~~----------------------------~~~-~~~~------v-~~------------------im~~~~~~v~~~   91 (184)
T 1pvm_A           67 -PRN----------------------------KKP-DEVP------I-RL------------------VMRKPIPKVKSD   91 (184)
T ss_dssp             -GGC----------------------------CCG-GGSB------G-GG------------------TSBSSCCEEETT
T ss_pred             -hcc----------------------------cCc-ccCC------H-HH------------------HhCCCCcEECCC
Confidence             000                            000 0000      0 00                  011356899999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          330 SSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       330 SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .+|.+++.++..|+++++.|+|++|.++|+|+..-
T Consensus        92 ~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~d  126 (184)
T 1pvm_A           92 YDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTD  126 (184)
T ss_dssp             CBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHH
Confidence            99999999999999999999999999999999753

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.55  E-value=1.1e-07  Score=78.64  Aligned_cols=117  Identities=10%  Similarity=0.052  Sum_probs=87.9

Q ss_pred             CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhh
Q 041297          168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDL  246 (379)
Q Consensus       168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf  246 (379)
                      ...++.++=--..+ +..++++++..+|++.|++.  ..+.+||||.+ |+++|-|+..||...                
T Consensus        21 ~~~~v~diM~~~~~-~~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~lvGivt~~dl~~~----------------   81 (148)
T 3lv9_A           21 EEKKIREIMVPRTD-MVCIYESDSEEKILAILKEE--GVTRYPVCRKNKDDILGFVHIRDLYNQ----------------   81 (148)
T ss_dssp             GTCBGGGTSEETTT-CCCEETTCCHHHHHHHHHHS--CCSEEEEESSSTTSEEEEEEHHHHHHH----------------
T ss_pred             CCCCHHHccccHHH-eEEECCCCCHHHHHHHHHHC--CCCEEEEEcCCCCcEEEEEEHHHHHHH----------------
Confidence            35566654211126 99999999999999999986  55899999998 899999988777430                


Q ss_pred             hhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceee
Q 041297          247 MAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVC  326 (379)
Q Consensus       247 ~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC  326 (379)
                         +..                            ...  ...         .+.                  - ..++++
T Consensus        82 ---~~~----------------------------~~~--~~v---------~~~------------------m-~~~~~v  100 (148)
T 3lv9_A           82 ---KIN----------------------------ENK--IEL---------EEI------------------L-RDIIYI  100 (148)
T ss_dssp             ---HHH----------------------------HSC--CCG---------GGT------------------C-BCCEEE
T ss_pred             ---Hhc----------------------------CCC--ccH---------HHh------------------c-CCCeEE
Confidence               000                            000  000         000                  1 347899


Q ss_pred             cCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          327 YPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       327 ~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .+..+|.+++..+..|+.+++-|+|++|.++|+|+..-
T Consensus       101 ~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~d  138 (148)
T 3lv9_A          101 SENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIED  138 (148)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHH
T ss_pred             CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence            99999999999999999999999999999999998654

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.55  E-value=1.6e-07  Score=75.65  Aligned_cols=106  Identities=18%  Similarity=0.273  Sum_probs=84.8

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|++++.||++.|. +|.+.++|+++ .+-               .=++|..|+++++.+...     ...++.++
T Consensus        14 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~---------------~Givt~~dl~~~~~~~~~-----~~~~v~~~   72 (133)
T 2ef7_A           14 VISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKP---------------VGIITERDIVKAIGKGKS-----LETKAEEF   72 (133)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEEET-TEE---------------EEEEEHHHHHHHHHTTCC-----TTCBGGGT
T ss_pred             CEEECCCCcHHHHHHHHHhcCCCEEEEEEC-CEE---------------EEEEcHHHHHHHHhcCCC-----cccCHHHH
Confidence            667999999999999998 69999999872 111               129999999999876422     24556654


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..|+.+++..+|++.|.+.  ....+||||.+|+++|-||..||-
T Consensus        73 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~~g~~~Giit~~dll  120 (133)
T 2ef7_A           73 --MTAS-LITIREDSPITGALALMRQF--NIRHLPVVDDKGNLKGIISIRDIT  120 (133)
T ss_dssp             --SEEC-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             --cCCC-CEEECCCCCHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHHH
Confidence              3456 88999999999999999876  447899999999999999988764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.54  E-value=4.4e-07  Score=73.74  Aligned_cols=108  Identities=11%  Similarity=0.054  Sum_probs=87.4

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc----ccccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----CFCSF   90 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----VS~li   90 (379)
                      +-+++....|+.+|++.+.+++...+||-+.+                    .++++|+|+.-|++-++..    |+++.
T Consensus        16 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--------------------~~~~~Givt~~dl~~~~~~~~~~v~~~m   75 (129)
T 3jtf_A           16 RMDLLDISQPLPQLLATIIETAHSRFPVYEDD--------------------RDNIIGILLAKDLLRYMLEPALDIRSLV   75 (129)
T ss_dssp             GCCCEETTSCHHHHHHHHHHSCCSEEEEESSS--------------------TTCEEEEEEGGGGGGGGTCTTSCGGGGC
T ss_pred             HeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------------------CCcEEEEEEHHHHHhHhccCCcCHHHHh
Confidence            34677889999999999999999999998732                    2479999999999987753    77776


Q ss_pred             cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297           91 AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI  161 (379)
Q Consensus        91 ~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i  161 (379)
                      .+    +..+.|+++|.||++.|. ++.++++|+++..+-               .=++|++||++.|.+-|
T Consensus        76 ~~----~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~---------------~Giit~~Dil~~l~gei  128 (129)
T 3jtf_A           76 RP----AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGI---------------SGLVTMEDVLEQIVGDI  128 (129)
T ss_dssp             BC----CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCE---------------EEEEEHHHHHHHHHHTC
T ss_pred             CC----CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCE---------------EEEEEHHHHHHHHhCCC
Confidence            32    568999999999999999 589999998753221               11999999999998754

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.54  E-value=1.7e-07  Score=80.31  Aligned_cols=119  Identities=14%  Similarity=0.051  Sum_probs=87.5

Q ss_pred             CCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhh
Q 041297          167 TPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGD  245 (379)
Q Consensus       167 ~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgd  245 (379)
                      +...++.++=--.++ +..|+.++++.+|++.|++.  ..+.+||||.+ |+++|-|+..||...               
T Consensus        39 l~~~~v~diM~~~~~-~~~v~~~~~v~~a~~~m~~~--~~~~~pVvd~~~~~lvGivt~~dl~~~---------------  100 (172)
T 3lhh_A           39 LDERTISSLMVPRSD-IVFLDLNLPLDANLRTVMQS--PHSRFPVCRNNVDDMVGIISAKQLLSE---------------  100 (172)
T ss_dssp             ----CTTTTSEEGGG-CCCEETTSCHHHHHHHHHTC--CCSEEEEESSSTTSEEEEEEHHHHHHH---------------
T ss_pred             cCCCCHHHhCccHHH-eEEEcCCCCHHHHHHHHHhC--CCCEEEEEeCCCCeEEEEEEHHHHHHH---------------
Confidence            345566665322256 89999999999999999885  55899999998 999999988777440               


Q ss_pred             hhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcccee
Q 041297          246 LMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIV  325 (379)
Q Consensus       246 f~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vt  325 (379)
                          ...                  +          ..    .+      - .+.                 .  ..+++
T Consensus       101 ----~~~------------------~----------~~----~~------v-~~i-----------------m--~~~~~  118 (172)
T 3lhh_A          101 ----SIA------------------G----------ER----LE------L-VDL-----------------V--KNCNF  118 (172)
T ss_dssp             ----HHT------------------T----------CC----CC------G-GGG-----------------C--BCCEE
T ss_pred             ----Hhh------------------c----------Cc----cc------H-HHH-----------------h--cCCeE
Confidence                000                  0          00    00      0 010                 1  45789


Q ss_pred             ecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          326 CYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       326 C~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      +.+..+|.+++..+..|+.+++=|+|++|.++|+|+...-
T Consensus       119 v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Di  158 (172)
T 3lhh_A          119 VPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDM  158 (172)
T ss_dssp             EETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             eCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHH
Confidence            9999999999999999999999999999999999987543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.54  E-value=1.7e-07  Score=79.29  Aligned_cols=119  Identities=16%  Similarity=0.164  Sum_probs=90.9

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++..+...-+..+.|++++.||++.|. +|.+.++|++...+-               .=++|..|+++++.......
T Consensus        26 v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~~~   90 (165)
T 3fhm_A           26 VKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVV---------------LGIFTERDLVKAVAGQGAAS   90 (165)
T ss_dssp             HHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHHHHHGGGG
T ss_pred             HHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeE---------------EEEEEHHHHHHHHHhcCCcc
Confidence            66666431123678999999999999998 689999998743211               11999999999998764222


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                         ...++.++  ..++ +..|+.+++..+|++.|.+.  +...+||||. |+++|-|+..||-
T Consensus        91 ---~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~-g~~~Giit~~dil  145 (165)
T 3fhm_A           91 ---LQQSVSVA--MTKN-VVRCQHNSTTDQLMEIMTGG--RFRHVPVEEN-GRLAGIISIGDVV  145 (165)
T ss_dssp             ---GTSBGGGT--SBSS-CCCBCTTCBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHH
T ss_pred             ---ccCCHHHH--hcCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHHH
Confidence               24555554  3466 88999999999999999876  4589999999 9999999988774

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.53  E-value=2e-07  Score=78.52  Aligned_cols=115  Identities=10%  Similarity=0.109  Sum_probs=86.7

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC-cEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG-RLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG-kLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      ..++.++=--.++ +..++.+++..+|++.|++.  ..+.+||+|.+| +++|-|+..||.......    ....+    
T Consensus        37 ~~~v~diM~~~~~-~~~v~~~~~i~~a~~~m~~~--~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~----~~~~v----  105 (156)
T 3oi8_A           37 DLEVRDAMITRSR-MNVLKENDSIERITAYVIDT--AHSRFPVIGEDKDEVLGILHAKDLLKYMFNP----EQFHL----  105 (156)
T ss_dssp             TCBGGGTCEEGGG-CCCEETTCCHHHHHHHHHHH--CCSEEEEESSSTTCEEEEEEGGGGGGGSSCG----GGCCH----
T ss_pred             CCCHhheeeeHHH-eEEECCCCCHHHHHHHHHHC--CCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC----CcccH----
Confidence            4556655211236 89999999999999999885  558999999985 999999998886521000    00000    


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                                                                        .+.                +   ..++++.
T Consensus       106 --------------------------------------------------~~i----------------m---~~~~~v~  116 (156)
T 3oi8_A          106 --------------------------------------------------KSI----------------L---RPAVFVP  116 (156)
T ss_dssp             --------------------------------------------------HHH----------------C---BCCCEEE
T ss_pred             --------------------------------------------------HHH----------------c---CCCEEEC
Confidence                                                              000                0   1268999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +..+|.+++..+..|+.+++=|+|++|.++|+|+..
T Consensus       117 ~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~  152 (156)
T 3oi8_A          117 EGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFE  152 (156)
T ss_dssp             TTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHH
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHH
Confidence            999999999999999999999999999999999853

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.52  E-value=3e-07  Score=75.26  Aligned_cols=114  Identities=10%  Similarity=0.029  Sum_probs=85.3

Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC--cEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG--RLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG--kLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      .++.++  ..++ +..+..+++..+|++.|.+.  ..+.+||||.+|  +++|-|+..+|...       ++        
T Consensus         5 ~~v~~i--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~~~Givt~~dl~~~-------~~--------   64 (141)
T 2rih_A            5 IRTSEL--LKRP-PVSLPETATIREVATELAKN--RVGLAVLTARDNPKRPVAVVSERDILRA-------VA--------   64 (141)
T ss_dssp             CBGGGG--CCSC-CEEEETTCBHHHHHHHHHHH--TCSEEEEEETTEEEEEEEEEEHHHHHHH-------HH--------
T ss_pred             eEHHHH--hcCC-CeEeCCCCcHHHHHHHHHHc--CCCEEEEEcCCCcceeEEEEEHHHHHHH-------Hh--------
Confidence            344443  4567 99999999999999999886  458999999999  99999988776430       00        


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                         ..                   .        ..   . .+      . .+.                  -...+++|.
T Consensus        65 ---~~-------------------~--------~~---~-~~------v-~~~------------------m~~~~~~v~   85 (141)
T 2rih_A           65 ---QR-------------------L--------DL---D-GP------A-MPI------------------ANSPITVLD   85 (141)
T ss_dssp             ---TT-------------------C--------CT---T-SB------S-GGG------------------CBCCCEEET
T ss_pred             ---cC-------------------C--------CC---C-CC------H-HHH------------------cCCCCeEEc
Confidence               00                   0        00   0 00      0 010                  113578999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +. +|.+++.++..++.+++.|+|++|.++|+|+..
T Consensus        86 ~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~  120 (141)
T 2rih_A           86 TD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIR  120 (141)
T ss_dssp             TS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             CC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHH
Confidence            99 999999999999999999999999999999864

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.52  E-value=2.3e-07  Score=78.22  Aligned_cols=112  Identities=16%  Similarity=0.146  Sum_probs=85.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccC----CCCCCc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLN----PTPNQP  171 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~----p~p~~S  171 (379)
                      +..+.|++++.||++.|. +|+..++|++...+-               .=++|..|+++++....+.+.    .....+
T Consensus        15 ~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~l---------------vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T 2o16_A           15 PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKL---------------LGIVSQRDLLAAQESSLQRSAQGDSLAFETP   79 (160)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEEHHHHHHHHHHHCC---------CCCB
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEEeHHHHHHHHHHhhcccccccchhcccC
Confidence            567899999999999998 689999998742211               119999999999987544321    123445


Q ss_pred             ccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          172 INSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       172 I~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      +.++  .+++ +..|+.++++.+|++.|.+.  ....+||||. |+++|-||..||-.
T Consensus        80 v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~-g~lvGiit~~dil~  131 (160)
T 2o16_A           80 LFEV--MHTD-VTSVAPQAGLKESAIYMQKH--KIGCLPVVAK-DVLVGIITDSDFVT  131 (160)
T ss_dssp             HHHH--SCSC-EEEBCTTSBHHHHHHHHHHT--TCSCEEEEET-TEEEEEECHHHHHH
T ss_pred             HHHH--hcCC-CeEECCCCCHHHHHHHHHHh--CCCEEEEEEC-CEEEEEEEHHHHHH
Confidence            5553  4467 99999999999999999885  4478999998 99999999887643

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.51  E-value=2.2e-07  Score=77.74  Aligned_cols=125  Identities=10%  Similarity=0.062  Sum_probs=84.8

Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCce-eEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTS-VAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRP  255 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tA-VAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~p  255 (379)
                      +.+++ +..|..+++..+|++.|.+.  ..+. +||||.+ +++|-|+..+|...-.      ..+     ..|+..   
T Consensus        21 im~~~-~~~v~~~~tl~ea~~~m~~~--~~~~~~~Vvd~~-~~vGivt~~dl~~~~~------~~~-----~~~~~~---   82 (157)
T 1o50_A           21 LISLK-PTVVEEDTPIEEIVDRILED--PVTRTVYVARDN-KLVGMIPVMHLLKVSG------FHF-----FGFIPK---   82 (157)
T ss_dssp             SSCCC-CEEECTTCBHHHHHHHHHHS--TTCCEEEEEETT-EEEEEEEHHHHHHHHH------HHH-----HCCCC----
T ss_pred             cccCC-CceECCCCCHHHHHHHHHhC--CCCccEEEEECC-EEEEEEEHHHHHHHHh------hhH-----Hhhhcc---
Confidence            35667 99999999999999999875  4588 9999988 9999999988854110      000     001110   


Q ss_pred             hhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHH
Q 041297          256 LKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAV  335 (379)
Q Consensus       256 pe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAV  335 (379)
                      ++.                    +...     .         ..      .    .....+.--.. ++++.+..+|.++
T Consensus        83 ~~~--------------------~~~~-----~---------~~------~----~~~~v~~im~~-~~~v~~~~~l~~a  117 (157)
T 1o50_A           83 EEL--------------------IRSS-----M---------KR------L----IAKNASEIMLD-PVYVHMDTPLEEA  117 (157)
T ss_dssp             --------------------------C-----C---------CC------C----SSCBHHHHCBC-CCCBCTTSBHHHH
T ss_pred             HHH--------------------HHHH-----H---------HH------H----cCCcHHHHcCC-CeEECCCCCHHHH
Confidence            000                    0000     0         00      0    00001100123 7899999999999


Q ss_pred             HHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          336 IMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       336 MaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +..+..++.+++.|+|++|.++|+|+...
T Consensus       118 ~~~m~~~~~~~lpVvd~~g~~vGiit~~d  146 (157)
T 1o50_A          118 LKLMIDNNIQEMPVVDEKGEIVGDLNSLE  146 (157)
T ss_dssp             HHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             HHHHHHCCCcEEEEEcCCCEEEEEEEHHH
Confidence            99999999999999999999999999643

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.51  E-value=1.3e-07  Score=76.51  Aligned_cols=117  Identities=9%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc-CCCcHHHHHHHHhcchhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL-NSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L-~~CDet~a~A~atLSAgdf~  247 (379)
                      ..++.+  +.+++ +..++.+++..+|+++|++.  ..+.+||||.+|+++|-|+..+| ...                 
T Consensus         7 ~~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~~-----------------   64 (138)
T 2p9m_A            7 NIKVKD--VMTKN-VITAKRHEGVVEAFEKMLKY--KISSLPVIDDENKVIGIVTTTDIGYNL-----------------   64 (138)
T ss_dssp             TCBGGG--TSBCS-CCCEETTSBHHHHHHHHHHH--TCCEEEEECTTCBEEEEEEHHHHHHHH-----------------
T ss_pred             cCCHHH--hhcCC-ceEECCCCcHHHHHHHHHHC--CCcEEEEECCCCeEEEEEEHHHHHHHH-----------------
Confidence            344554  34567 89999999999999999876  45899999999999999988776 320                 


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                        +..+                            . . ...+      . .+.                  -...+++|.
T Consensus        65 --~~~~----------------------------~-~-~~~~------v-~~~------------------m~~~~~~v~   87 (138)
T 2p9m_A           65 --IRDK----------------------------Y-T-LETT------I-GDV------------------MTKDVITIH   87 (138)
T ss_dssp             --TTTC----------------------------C-C-SSCB------H-HHH------------------SCSSCCCEE
T ss_pred             --Hhhc----------------------------c-c-CCcC------H-HHH------------------hCCCcEEEC
Confidence              0000                            0 0 0000      0 000                  113468999


Q ss_pred             CCCcHHHHHHHHHHcC-----CcEEEEeeCCCCcccceEeeh
Q 041297          328 PWSSLMAVIMQALARR-----DRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       328 p~SSLvAVMaQAlaHR-----V~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +..+|.+++.++..|+     ++++.|+|++|.++|+|+..-
T Consensus        88 ~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~d  129 (138)
T 2p9m_A           88 EDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGD  129 (138)
T ss_dssp             TTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHH
T ss_pred             CCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHH
Confidence            9999999999999999     999999999999999999754

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.50  E-value=1.3e-07  Score=76.68  Aligned_cols=116  Identities=9%  Similarity=0.062  Sum_probs=88.4

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++.-+. ..+..+.|++++-||++.|. +|..+++|++....+              -.=++|..|+++++.+..   
T Consensus         8 v~~iM~~~-~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~--------------~~Givt~~dl~~~~~~~~---   69 (130)
T 3i8n_A            8 VTQVMTPR-PVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDN--------------IIGFVHRLELFKMQQSGS---   69 (130)
T ss_dssp             CTTTSCCB-CCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTC--------------EEEECCHHHHHHHHHTTT---
T ss_pred             HhhCCCcH-HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCc--------------EEEEEEHHHHHHHHhcCC---
Confidence            44444321 33668999999999999999 588899887643111              011999999999987642   


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                         +..++.++=   ++ +..|..+++..+|++.|.+.  +...+||||.+|+++|-|+..||-
T Consensus        70 ---~~~~v~~~m---~~-~~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~g~~vGivt~~dil  124 (130)
T 3i8n_A           70 ---GQKQLGAVM---RP-IQVVLNNTALPKVFDQMMTH--RLQLALVVDEYGTVLGLVTLEDIF  124 (130)
T ss_dssp             ---TTSBHHHHS---EE-CCEEETTSCHHHHHHHHHHH--TCCEEEEECTTSCEEEEEEHHHHH
T ss_pred             ---CcCCHHHHh---cC-CcCcCCCCcHHHHHHHHHHc--CCeEEEEEcCCCCEEEEEEHHHHH
Confidence               255666653   45 78999999999999999885  558899999999999999988763

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.50  E-value=1.4e-07  Score=76.27  Aligned_cols=115  Identities=22%  Similarity=0.222  Sum_probs=87.2

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHH-HHHHHhhhcc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDL-IRYFLNFIGL  163 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDV-vRFLl~~ig~  163 (379)
                      |+++.-+   .+..+.|++++-||++.|. +|.+.++|+++..+-               .=++|..|+ ++++...   
T Consensus        10 v~~im~~---~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~---   68 (138)
T 2p9m_A           10 VKDVMTK---NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKV---------------IGIVTTTDIGYNLIRDK---   68 (138)
T ss_dssp             GGGTSBC---SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBE---------------EEEEEHHHHHHHHTTTC---
T ss_pred             HHHhhcC---CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeE---------------EEEEEHHHHHHHHHhhc---
Confidence            5666542   3567899999999999998 689999988643211               119999999 8887642   


Q ss_pred             cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhcccc-----CceeEEEcCCCcEEeeeCccccC
Q 041297          164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIK-----QTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~-----~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .....++.++  .+++ +..++.+++..+|++.|.+.  +     ...+||||++|+++|-|+..||-
T Consensus        69 --~~~~~~v~~~--m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~~~~l~Vvd~~g~~~Giit~~dll  131 (138)
T 2p9m_A           69 --YTLETTIGDV--MTKD-VITIHEDASILEAIKKMDIS--GKKEEIINQLPVVDKNNKLVGIISDGDII  131 (138)
T ss_dssp             --CCSSCBHHHH--SCSS-CCCEETTSBHHHHHHHHTCC-------CCCEEEEECTTSBEEEEEEHHHHH
T ss_pred             --ccCCcCHHHH--hCCC-cEEECCCCCHHHHHHHHHhc--CCccccccEEEEECCCCeEEEEEEHHHHH
Confidence              1234555554  4466 89999999999999999875  3     47899999999999999988763

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.50  E-value=4.2e-07  Score=75.91  Aligned_cols=115  Identities=10%  Similarity=0.059  Sum_probs=88.5

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEe-cCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVIL-PAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL  163 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi-~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~  163 (379)
                      |+++.-+. .-+..+.|++++-||++.|. +|.++++|+ +....+        .      .=++|..|+++++...-  
T Consensus        22 v~~iM~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~--------l------vGivt~~dl~~~~~~~~--   84 (153)
T 3oco_A           22 ASDVMVDR-TSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDK--------I------IGYAYNYDIVRQARIDD--   84 (153)
T ss_dssp             HHHHSEEG-GGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEE--------E------EEEEEHHHHHHHHHHHT--
T ss_pred             eeeEecch-hheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCc--------E------EEEEEHHHHHhHHhcCC--
Confidence            55554321 23567999999999999999 689999998 432111        0      11999999999987652  


Q ss_pred             cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                           ..++.++=   ++ +..|..+++..+|++.|.+.  +...+||||.+|+++|-|+..||-
T Consensus        85 -----~~~v~~~m---~~-~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd~~g~~vGivt~~dil  138 (153)
T 3oco_A           85 -----KAKISTIM---RD-IVSVPENMKVPDVMEEMSAH--RVPMAIVIDEYGGTSGIITDKDVY  138 (153)
T ss_dssp             -----TSBGGGTC---BC-CEEEETTSBHHHHHHHHHHT--TCSCEEEECTTSCEEEEECHHHHH
T ss_pred             -----CCcHHHHh---CC-CeEECCCCCHHHHHHHHHHc--CCcEEEEEeCCCCEEEEeeHHHHH
Confidence                 45666653   56 89999999999999999886  448899999999999999988774

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.49  E-value=7.4e-08  Score=82.39  Aligned_cols=110  Identities=14%  Similarity=0.091  Sum_probs=85.7

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..|+|++++-||+++|. +|..++.|+++..+-.         .      ++|..|+++++...-.........+|.++
T Consensus        27 v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lv---------G------iit~~Di~~~~~~~~~~~~~~~~~~v~~i   91 (156)
T 3k6e_A           27 LAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFV---------G------TIGLRDIMAYQMEHDLSQEIMADTDIVHM   91 (156)
T ss_dssp             SCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEE---------E------EEEHHHHHHHHHHHTCCHHHHTTSBGGGT
T ss_pred             eEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEE---------E------EEEecchhhhhhhcccccccccccCHHHh
Confidence            678999999999999999 7999999986532211         1      89999999999875433333344555543


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..|..+++..+|+++|.+.    .-+||||.+|+++|=|+..|+-
T Consensus        92 --m~~~-~~~v~~~~~l~~~~~~m~~~----~~lpVVd~~g~l~GiiT~~Dil  137 (156)
T 3k6e_A           92 --TKTD-VAVVSPDFTITEVLHKLVDE----SFLPVVDAEGIFQGIITRKSIL  137 (156)
T ss_dssp             --CBCS-CCCBCTTCCHHHHHHHTTTS----SEEEEECTTSBEEEEEEHHHHH
T ss_pred             --hcCC-ceecccccHHHHHHHHHHHc----CCeEEEecCCEEEEEEEHHHHH
Confidence              4567 89999999999999999652    3499999999999999988873

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.48  E-value=1.3e-07  Score=79.85  Aligned_cols=118  Identities=14%  Similarity=0.079  Sum_probs=83.5

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      .+++ +..|..+++..+|+++|.+.  ..+.+||||.+|+++|-|+..+|......      .     +..+..      
T Consensus        11 m~~~-~~~v~~~~tl~~a~~~m~~~--~~~~~pVvd~~~~lvGivt~~dl~~~~~~------~-----~~~~~~------   70 (160)
T 2o16_A           11 MTRH-PHTLLRTHTLNDAKHLMEAL--DIRHVPIVDANKKLLGIVSQRDLLAAQES------S-----LQRSAQ------   70 (160)
T ss_dssp             SEES-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHHHHHH------H-----CC----------
T ss_pred             hcCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEeHHHHHHHHHH------h-----hccccc------
Confidence            4566 88999999999999999876  45899999999999999998887541100      0     000000      


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                                   +         ..   . .         .+.     .        .+.--...+++|.+..+|..++.
T Consensus        71 -------------~---------~~---~-~---------~~~-----~--------v~~im~~~~~~v~~~~~l~~a~~  102 (160)
T 2o16_A           71 -------------G---------DS---L-A---------FET-----P--------LFEVMHTDVTSVAPQAGLKESAI  102 (160)
T ss_dssp             ----------------------------------------CCC-----B--------HHHHSCSCEEEBCTTSBHHHHHH
T ss_pred             -------------c---------cc---h-h---------ccc-----C--------HHHHhcCCCeEECCCCCHHHHHH
Confidence                         0         00   0 0         000     0        00001135789999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .+..++++++.|+|+ |.++|+|+...
T Consensus       103 ~m~~~~~~~lpVvd~-g~lvGiit~~d  128 (160)
T 2o16_A          103 YMQKHKIGCLPVVAK-DVLVGIITDSD  128 (160)
T ss_dssp             HHHHTTCSCEEEEET-TEEEEEECHHH
T ss_pred             HHHHhCCCEEEEEEC-CEEEEEEEHHH
Confidence            999999999999999 99999999754

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.47  E-value=1.5e-07  Score=78.10  Aligned_cols=136  Identities=16%  Similarity=0.114  Sum_probs=88.7

Q ss_pred             EeeHHHHHHHHHhhhcccCCCCCCcccccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCc
Q 041297          147 WLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISP  224 (379)
Q Consensus       147 ~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa  224 (379)
                      .++.+|..+|--+  +.++....+++.++=  ++  + +..|..++++.+|++.|.+.  ..+.+||||.+|+++|-|+.
T Consensus         7 ~f~~~~~~~~~~~--~~l~~~l~~~v~dim--~~~~~-~~~v~~~~~~~~a~~~m~~~--~~~~~~Vvd~~~~~~Givt~   79 (149)
T 3k2v_A            7 GFTAEDFALSHPG--GALGRKLLLRVNDIM--HTGDE-IPHVGLQATLRDALLEITRK--NLGMTAICDDDMNIIGIFTD   79 (149)
T ss_dssp             ---------------CHHHHHTTSBGGGTS--BCGGG-SCEECTTCBHHHHHHHHHHH--TSSEEEEECTTCBEEEEEEH
T ss_pred             CCCHHHhhhcCCC--chhchhcccCHHHHh--cCCCC-CeEECCCCcHHHHHHHHHhC--CCcEEEEECCCCcEEEEecH
Confidence            4455665555432  222333346777753  44  6 89999999999999999886  55899999999999999988


Q ss_pred             cccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCcccccccc
Q 041297          225 FSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGS  304 (379)
Q Consensus       225 ~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~  304 (379)
                      .+|..                   .+..+                                ..+.   .... ++.    
T Consensus        80 ~dl~~-------------------~~~~~--------------------------------~~~~---~~~v-~~~----  100 (149)
T 3k2v_A           80 GDLRR-------------------VFDTG--------------------------------VDMR---DASI-ADV----  100 (149)
T ss_dssp             HHHHH-------------------HHCSS--------------------------------SCCT---TCBH-HHH----
T ss_pred             HHHHH-------------------HHhcC--------------------------------CCcc---cCcH-HHH----
Confidence            77743                   01100                                0000   0000 000    


Q ss_pred             CCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          305 ARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       305 ~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                                    -...+++|++..+|.+++..+..|+++++.|+|++ .++|+|+..
T Consensus       101 --------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~  144 (149)
T 3k2v_A          101 --------------MTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMH  144 (149)
T ss_dssp             --------------SEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHH
T ss_pred             --------------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHH
Confidence                          11346899999999999999999999999999987 999999853

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.47  E-value=7e-07  Score=79.65  Aligned_cols=116  Identities=9%  Similarity=0.054  Sum_probs=87.9

Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchh
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAG  244 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAg  244 (379)
                      +|.+..++.+  +..++ +..|..+++..+|+++|.+.  ..+.+||+|.+|+++|-|+..||.....       ...+.
T Consensus         8 ~~~~~~~~~~--~~~~~-~~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~l~Givt~~dl~~~~~-------~~~v~   75 (213)
T 1vr9_A            8 HHHHHMKVKK--WVTQD-FPMVEESATVRECLHRMRQY--QTNECIVKDREGHFRGVVNKEDLLDLDL-------DSSVF   75 (213)
T ss_dssp             -----CBGGG--GCBSC-SCEEETTCBHHHHHHHHHHT--TSSEEEEECTTSBEEEEEEGGGGTTSCT-------TSBSG
T ss_pred             ccccccCHHH--hhcCC-CeEECCCCcHHHHHHHHHHC--CCCEEEEEcCCCEEEEEEEHHHHHhhcC-------CCcHH
Confidence            3444444433  34566 89999999999999999886  5589999999999999999999975221       00000


Q ss_pred             hhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccce
Q 041297          245 DLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAI  324 (379)
Q Consensus       245 df~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~v  324 (379)
                      |+                                                                        -...++
T Consensus        76 ~i------------------------------------------------------------------------m~~~~~   83 (213)
T 1vr9_A           76 NK------------------------------------------------------------------------VSLPDF   83 (213)
T ss_dssp             GG------------------------------------------------------------------------CBCTTC
T ss_pred             HH------------------------------------------------------------------------ccCCCE
Confidence            00                                                                        012478


Q ss_pred             eecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          325 VCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       325 tC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      ++.+..+|.+++..+..|+++++-|+|++|.++|+|+..-
T Consensus        84 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~D  123 (213)
T 1vr9_A           84 FVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHD  123 (213)
T ss_dssp             CEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHH
T ss_pred             EECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHH
Confidence            9999999999999999999999999999999999998753

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.47  E-value=8.8e-08  Score=78.07  Aligned_cols=123  Identities=20%  Similarity=0.248  Sum_probs=86.2

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhh----
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNF----  160 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~----  160 (379)
                      |+++..+. ..+..++|++++.||++.|. +|...++|++...+-               .=++|..|+++++...    
T Consensus         7 v~~im~~~-~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~G~vt~~dl~~~~~~~~~~~   70 (152)
T 4gqw_A            7 VGEFMTKK-EDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKL---------------VGLVSDYDLLALDSGDSTWK   70 (152)
T ss_dssp             GGGTSEES-TTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBE---------------EEEEEHHHHTTCC----CCH
T ss_pred             hhhccCCC-CCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeE---------------EEEEEHHHHHHhhcccCccc
Confidence            44454321 23677999999999999998 688899887653211               1289999998764321    


Q ss_pred             -----hcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          161 -----IGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       161 -----ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                           -..+......++.++  .+++ +..|+.+++..+|++.|.+.  +...+||||.+|+++|-|+..||-.
T Consensus        71 ~~~~~~~~~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~~~~~--~~~~l~Vvd~~g~~~Giit~~dil~  139 (152)
T 4gqw_A           71 TFNAVQKLLSKTNGKLVGDL--MTPA-PLVVEEKTNLEDAAKILLET--KYRRLPVVDSDGKLVGIITRGNVVR  139 (152)
T ss_dssp             HHHHHHTC-----CCBHHHH--SEES-CCCEESSSBHHHHHHHHHHS--SCCEEEEECTTSBEEEEEEHHHHHH
T ss_pred             chHHHHHHHHHhccccHHHh--cCCC-ceEECCCCcHHHHHHHHHHC--CCCEEEEECCCCcEEEEEEHHHHHH
Confidence                 112222334556554  4566 88899999999999999875  4478999999999999999887743

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.47  E-value=1.9e-07  Score=76.98  Aligned_cols=120  Identities=15%  Similarity=0.189  Sum_probs=87.7

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-c
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-L  163 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~  163 (379)
                      |+++..+. ..+..+.|++++-||++.|. +|..+++|++...+-               .=++|..|+++++.+..+ .
T Consensus        17 v~~im~~~-~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~---------------~Givt~~dl~~~~~~~~~~~   80 (150)
T 3lqn_A           17 VKDLMISS-EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKL---------------HGLISTAMILDGILGLERIE   80 (150)
T ss_dssp             HHHHSEEG-GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEEHHHHHHHTBCSSSBC
T ss_pred             hhhcccCC-CceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCE---------------EEEEEHHHHHHHHHhhcccc
Confidence            55555321 23667999999999999998 689999998643211               119999999999864321 1


Q ss_pred             cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +......++.++  .+++ +..|..+++..+|++.|.+.   .. +||||.+|+++|-|+..||-
T Consensus        81 ~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~~~~~---~~-l~Vvd~~g~~~Giit~~dil  138 (150)
T 3lqn_A           81 FERLEEMKVEQV--MKQD-IPVLKLEDSFAKALEMTIDH---PF-ICAVNEDGYFEGILTRRAIL  138 (150)
T ss_dssp             GGGGGGCBGGGT--CBSS-CCEEETTCBHHHHHHHHHHC---SE-EEEECTTCBEEEEEEHHHHH
T ss_pred             hhHHhcCCHHHH--hcCC-CceeCCCCCHHHHHHHHHhC---CE-EEEECCCCcEEEEEEHHHHH
Confidence            112234556553  4567 89999999999999999764   23 99999999999999988764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.47  E-value=5.4e-07  Score=77.16  Aligned_cols=115  Identities=9%  Similarity=0.005  Sum_probs=90.1

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++.-+. .-+..+.|++++-||++.|. +|..+++|++....+              -.=++|..|+++++...    
T Consensus        44 v~diM~~~-~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~--------------lvGivt~~dl~~~~~~~----  104 (172)
T 3lhh_A           44 ISSLMVPR-SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDD--------------MVGIISAKQLLSESIAG----  104 (172)
T ss_dssp             TTTTSEEG-GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTS--------------EEEEEEHHHHHHHHHTT----
T ss_pred             HHHhCccH-HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCe--------------EEEEEEHHHHHHHHhhc----
Confidence            66666421 23678999999999999999 589999997653111              01189999999998764    


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                         ...++.++=   ++ +..|+.+++..+|++.|.+.  +...+||||.+|+++|=|+..||-
T Consensus       105 ---~~~~v~~im---~~-~~~v~~~~~l~~a~~~m~~~--~~~~~pVvd~~g~lvGiit~~Dil  159 (172)
T 3lhh_A          105 ---ERLELVDLV---KN-CNFVPNSLSGMELLEHFRTT--GSQMVFVVDEYGDLKGLVTLQDMM  159 (172)
T ss_dssp             ---CCCCGGGGC---BC-CEEEETTCCHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             ---CcccHHHHh---cC-CeEeCCCCCHHHHHHHHHHc--CCeEEEEEeCCCCEEEEeeHHHHH
Confidence               145666653   66 89999999999999999886  458899999999999999988874

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.47  E-value=3.5e-07  Score=72.53  Aligned_cols=109  Identities=12%  Similarity=0.103  Sum_probs=81.3

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      .+++ +..++.+++..+|++.|.+.  ..+.+||+| +|+++|-|+..+|...       +..   +     .+.     
T Consensus         7 m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd-~~~~~G~it~~dl~~~-------~~~---~-----~~~-----   62 (125)
T 1pbj_A            7 MVTD-VDTIDITASLEDVLRNYVEN--AKGSSVVVK-EGVRVGIVTTWDVLEA-------IAE---G-----DDL-----   62 (125)
T ss_dssp             CBCS-CCEEETTCBHHHHHHHHHHH--CCCEEEEEE-TTEEEEEEEHHHHHHH-------HHH---T-----CCT-----
T ss_pred             cCCC-ceEECCCCcHHHHHHHHHHc--CCCEEEEEe-CCeeEEEEeHHHHHHH-------Hhc---C-----Ccc-----
Confidence            3456 89999999999999999875  458999999 9999999988877430       000   0     000     


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                                                  ...+      - .+.                  -...++++.+..+|.+++.
T Consensus        63 ----------------------------~~~~------v-~~~------------------m~~~~~~v~~~~~l~~~~~   89 (125)
T 1pbj_A           63 ----------------------------AEVK------V-WEV------------------MERDLVTISPRATIKEAAE   89 (125)
T ss_dssp             ----------------------------TTSB------H-HHH------------------CBCGGGEECTTSCHHHHHH
T ss_pred             ----------------------------cccC------H-HHH------------------cCCCCeEECCCCCHHHHHH
Confidence                                        0000      0 000                  1134789999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .+..|+.+++.|+|+ |.++|+|+..-
T Consensus        90 ~~~~~~~~~l~Vvd~-~~~~Gvit~~d  115 (125)
T 1pbj_A           90 KMVKNVVWRLLVEED-DEIIGVISATD  115 (125)
T ss_dssp             HHHHHTCSEEEEEET-TEEEEEEEHHH
T ss_pred             HHHhcCCcEEEEEEC-CEEEEEEEHHH
Confidence            999999999999999 99999998643

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.47  E-value=2.7e-07  Score=74.77  Aligned_cols=111  Identities=14%  Similarity=0.210  Sum_probs=82.1

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|++++.||++.|. +|..+++|++...+-               .=++|..|+++++.....   .....++.++
T Consensus        21 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~---~~~~~~v~~~   82 (144)
T 2nyc_A           21 MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL---------------INVYEAYDVLGLIKGGIY---NDLSLSVGEA   82 (144)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEEHHHHHHHHHTC-------CCSBHHHH
T ss_pred             ceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcE---------------EEEEcHHHHHHHhccccc---ccCCccHHHH
Confidence            567999999999999998 689999888743211               119999999999876321   1224455553


Q ss_pred             cccc----CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIID----DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~----~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      =.-+    .+ +..|+.++++.+|++.|.+.  +...+||||.+|+++|-|+..||-
T Consensus        83 m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~~~Giit~~dil  136 (144)
T 2nyc_A           83 LMRRSDDFEG-VYTCTKNDKLSTIMDNIRKA--RVHRFFVVDDVGRLVGVLTLSDIL  136 (144)
T ss_dssp             HHHCC-------CEECTTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHH
T ss_pred             HhcCccccCC-CeEECCCCcHHHHHHHHHHC--CCCEEEEECCCCCEEEEEEHHHHH
Confidence            1111    15 89999999999999999876  458999999999999999988763

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.46  E-value=3e-07  Score=77.27  Aligned_cols=126  Identities=14%  Similarity=0.100  Sum_probs=89.3

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMA  248 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a  248 (379)
                      ..++.++=  ++. + .|..++++.+|++.|.+.  ..+.+||||.+|+++|-|+..+|...       +          
T Consensus        16 ~~~v~~im--~~~-~-~v~~~~~~~~a~~~m~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~-------~----------   72 (159)
T 3fv6_A           16 KLQVKDFQ--SIP-V-VIHENVSVYDAICTMFLE--DVGTLFVVDRDAVLVGVLSRKDLLRA-------S----------   72 (159)
T ss_dssp             TCBGGGSC--BCC-C-EEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH-------H----------
T ss_pred             hCCHHHHc--CCC-E-EECCCCcHHHHHHHHHHC--CCCEEEEEcCCCcEEEEEeHHHHHHH-------h----------
Confidence            44566653  344 5 899999999999999885  55899999999999999987766430       0          


Q ss_pred             hhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecC
Q 041297          249 YMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYP  328 (379)
Q Consensus       249 ~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p  328 (379)
                       +..                             ... ...+      . .+.                +.....++++.+
T Consensus        73 -~~~-----------------------------~~~-~~~~------v-~~~----------------m~~~~~~~~v~~   98 (159)
T 3fv6_A           73 -IGQ-----------------------------QEL-TSVP------V-HII----------------MTRMPNITVCRR   98 (159)
T ss_dssp             -TSC-----------------------------SCT-TTCB------G-GGT----------------SEETTSCCCBCT
T ss_pred             -hcc-----------------------------Ccc-cCcC------H-HHH----------------HcCCCCcEEECC
Confidence             000                             000 0000      0 000                112235789999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEeeCCC---CcccceEeehhhHHHHH
Q 041297          329 WSSLMAVIMQALARRDRLRSMAKAEN---PNFCPVRIQAKKQQLSR  371 (379)
Q Consensus       329 ~SSLvAVMaQAlaHRV~~vWVvd~e~---~l~~~v~~~~~~~~~~~  371 (379)
                      ..+|.+++..+..|+++++.|+|++|   .++|+|+...--+.+.+
T Consensus        99 ~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           99 EDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999999   99999997654444433

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.45  E-value=5.6e-07  Score=73.09  Aligned_cols=104  Identities=11%  Similarity=0.109  Sum_probs=81.7

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhh
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKD  258 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~  258 (379)
                      ++ +..+..++++.+|++.|++.  ..+.+||+|.+ |+++|-|+..||.....                  +..     
T Consensus        15 ~~-~~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~~~Givt~~dl~~~~~------------------~~~-----   68 (129)
T 3jtf_A           15 SR-MDLLDISQPLPQLLATIIET--AHSRFPVYEDDRDNIIGILLAKDLLRYML------------------EPA-----   68 (129)
T ss_dssp             GG-CCCEETTSCHHHHHHHHHHS--CCSEEEEESSSTTCEEEEEEGGGGGGGGT------------------CTT-----
T ss_pred             HH-eEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCCcEEEEEEHHHHHhHhc------------------cCC-----
Confidence            45 88999999999999999985  55899999996 89999999988865100                  000     


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHH
Q 041297          259 LVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQ  338 (379)
Q Consensus       259 l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQ  338 (379)
                                                 . .       - ++.                +   ..++++.+..+|.+++..
T Consensus        69 ---------------------------~-~-------v-~~~----------------m---~~~~~v~~~~~l~~~~~~   93 (129)
T 3jtf_A           69 ---------------------------L-D-------I-RSL----------------V---RPAVFIPEVKRLNVLLRE   93 (129)
T ss_dssp             ---------------------------S-C-------G-GGG----------------C---BCCCEEETTCBHHHHHHH
T ss_pred             ---------------------------c-C-------H-HHH----------------h---CCCeEeCCCCcHHHHHHH
Confidence                                       0 0       0 000                1   127899999999999999


Q ss_pred             HHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          339 ALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       339 AlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +..|+.+++-|+|++|.++|+|+..-
T Consensus        94 m~~~~~~~~pVvd~~g~~~Giit~~D  119 (129)
T 3jtf_A           94 FRASRNHLAIVIDEHGGISGLVTMED  119 (129)
T ss_dssp             HHTSSCCEEEEECC-CCEEEEEEHHH
T ss_pred             HHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence            99999999999999999999998654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.45  E-value=3.4e-07  Score=76.95  Aligned_cols=116  Identities=12%  Similarity=0.190  Sum_probs=90.0

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++..+   ++ .+.|++++.||++.|. +|..+++|++...+-               .=++|..|++++++..    
T Consensus        19 v~~im~~---~~-~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~----   75 (159)
T 3fv6_A           19 VKDFQSI---PV-VIHENVSVYDAICTMFLEDVGTLFVVDRDAVL---------------VGVLSRKDLLRASIGQ----   75 (159)
T ss_dssp             GGGSCBC---CC-EEETTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHHTSC----
T ss_pred             HHHHcCC---CE-EECCCCcHHHHHHHHHHCCCCEEEEEcCCCcE---------------EEEEeHHHHHHHhhcc----
Confidence            6666652   34 8999999999999999 689999998743211               1299999999988543    


Q ss_pred             CCCCCCcccccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC---cEEeeeCccccCC
Q 041297          165 NPTPNQPINSHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG---RLVGDISPFSLNS  229 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG---kLIGeISa~~L~~  229 (379)
                      ......++.++  .++  + +..|..+++..+|++.|.+.  +...+||||.+|   +++|-|+..||-.
T Consensus        76 ~~~~~~~v~~~--m~~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~~~~vGiit~~dil~  140 (159)
T 3fv6_A           76 QELTSVPVHII--MTRMPN-ITVCRREDYVMDIAKHLIEK--QIDALPVIKDTDKGFEVIGRVTKTNMTK  140 (159)
T ss_dssp             SCTTTCBGGGT--SEETTS-CCCBCTTSBHHHHHHHHHHH--TCSEEEEEEECSSSEEEEEEEEHHHHHH
T ss_pred             CcccCcCHHHH--HcCCCC-cEEECCCCCHHHHHHHHHHc--CCcEEEEEeCCCcceeEEEEEEHHHHHH
Confidence            12345566664  444  6 89999999999999999876  558999999998   9999998877643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.45  E-value=8.8e-08  Score=77.26  Aligned_cols=116  Identities=9%  Similarity=0.069  Sum_probs=84.4

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC-CCcHHHHHHHHhcchhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN-SCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~-~CDet~a~A~atLSAgdf~  247 (379)
                      ..++.++  ..++ +..++.+++..+|+++|.+.  ..+.+||+|.+|+++|-|+..+|. ..-                
T Consensus         7 ~~~v~~i--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~~~----------------   65 (133)
T 1y5h_A            7 MTTARDI--MNAG-VTCVGEHETLTAAAQYMREH--DIGALPICGDDDRLHGMLTDRDIVIKGL----------------   65 (133)
T ss_dssp             -CCHHHH--SEET-CCCEETTSBHHHHHHHHHHH--TCSEEEEECGGGBEEEEEEHHHHHHTTG----------------
T ss_pred             hcCHHHH--hcCC-ceEeCCCCCHHHHHHHHHHh--CCCeEEEECCCCeEEEEEeHHHHHHHHH----------------
Confidence            3444443  3456 88999999999999999875  458999999999999999988875 211                


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                         ..+..+                             ...+      . .+.                  -...+++|.
T Consensus        66 ---~~~~~~-----------------------------~~~~------v-~~~------------------m~~~~~~v~   88 (133)
T 1y5h_A           66 ---AAGLDP-----------------------------NTAT------A-GEL------------------ARDSIYYVD   88 (133)
T ss_dssp             ---GGTCCT-----------------------------TTSB------H-HHH------------------HTTCCCCEE
T ss_pred             ---hcCCCc-----------------------------cccC------H-HHH------------------hcCCCEEEC
Confidence               000000                             0000      0 000                  112468999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +..+|.+++.++..++.+++.|+|+ |.++|+|+..
T Consensus        89 ~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~  123 (133)
T 1y5h_A           89 ANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEA  123 (133)
T ss_dssp             TTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHH
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence            9999999999999999999999998 8999999864

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.44  E-value=1.1e-07  Score=77.17  Aligned_cols=107  Identities=12%  Similarity=0.063  Sum_probs=79.9

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL  259 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l  259 (379)
                      ++ +..++.+++..+|++.|.+.  ..+.+||+| +|+++|-|+..+|...                  ....       
T Consensus        17 ~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd-~~~~~Givt~~dl~~~------------------~~~~-------   67 (135)
T 2rc3_A           17 HT-VVAIGPDDSVFNAMQKMAAD--NIGALLVMK-DEKLVGILTERDFSRK------------------SYLL-------   67 (135)
T ss_dssp             CC-CCEECTTSBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHHH------------------GGGS-------
T ss_pred             CC-cEEECCCCcHHHHHHHHHhc--CCCEEEEEE-CCEEEEEEehHHHHHH------------------HHHc-------
Confidence            56 89999999999999999876  458999999 9999999988877420                  0000       


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297          260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA  339 (379)
Q Consensus       260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA  339 (379)
                                 |..       ..   . .+      . .+.                  -...++++.+..+|.+++.++
T Consensus        68 -----------~~~-------~~---~-~~------v-~~~------------------m~~~~~~v~~~~~l~~~~~~m  100 (135)
T 2rc3_A           68 -----------DKP-------VK---D-TQ------V-KEI------------------MTRQVAYVDLNNTNEDCMALI  100 (135)
T ss_dssp             -----------SSC-------GG---G-SB------G-GGT------------------SBCSCCCBCTTCBHHHHHHHH
T ss_pred             -----------CCC-------cc---c-CC------H-HHh------------------ccCCCeEECCCCcHHHHHHHH
Confidence                       000       00   0 00      0 000                  113478999999999999999


Q ss_pred             HHcCCcEEEEeeCCCCcccceEee
Q 041297          340 LARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       340 laHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..|+.+++.|+| +|.++|+|+..
T Consensus       101 ~~~~~~~lpVvd-~g~~~Giit~~  123 (135)
T 2rc3_A          101 TEMRVRHLPVLD-DGKVIGLLSIG  123 (135)
T ss_dssp             HHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             HHhCCCEEEEEe-CCEEEEEEEHH
Confidence            999999999999 89999999864

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.43  E-value=4.6e-07  Score=75.78  Aligned_cols=118  Identities=18%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccE-EEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh--
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQN-LVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI--  161 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~r-llVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i--  161 (379)
                      |+++.-+   -+..+.|++++.||++.|. ++.++ ++|++.. +-.               =++|..|+++++...+  
T Consensus        18 v~~im~~---~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~v---------------Givt~~dl~~~~~~~~~~   78 (157)
T 1o50_A           18 VCKLISL---KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLV---------------GMIPVMHLLKVSGFHFFG   78 (157)
T ss_dssp             HTTSSCC---CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEE---------------EEEEHHHHHHHHHHHHHC
T ss_pred             HhhcccC---CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEE---------------EEEEHHHHHHHHhhhHHh
Confidence            4455432   3678999999999999998 68888 8888764 321               2999999999876421  


Q ss_pred             -----ccc----CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          162 -----GLL----NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       162 -----g~l----~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                           ..|    ......++.++  . .. +..|+.+++..+|++.|.+.  ....+||||.+|+++|-||..||-
T Consensus        79 ~~~~~~~~~~~~~~~~~~~v~~i--m-~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~vGiit~~dll  148 (157)
T 1o50_A           79 FIPKEELIRSSMKRLIAKNASEI--M-LD-PVYVHMDTPLEEALKLMIDN--NIQEMPVVDEKGEIVGDLNSLEIL  148 (157)
T ss_dssp             CCC-------CCCCCSSCBHHHH--C-BC-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             hhccHHHHHHHHHHHcCCcHHHH--c-CC-CeEECCCCCHHHHHHHHHHC--CCcEEEEEcCCCEEEEEEEHHHHH
Confidence                 111    12234445443  2 23 78899999999999999886  458899999999999999988763

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.43  E-value=5.4e-07  Score=72.83  Aligned_cols=106  Identities=12%  Similarity=0.053  Sum_probs=84.1

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFC   88 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~   88 (379)
                      +-+++....|+.+|++.+.+++...+||.+.+                    .++++|+|+.-|++-++.+      |++
T Consensus        14 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--------------------~~~~vGivt~~dl~~~~~~~~~~~~v~~   73 (127)
T 3nqr_A           14 QMITLKRNQTLDECLDVIIESAHSRFPVISED--------------------KDHIEGILMAKDLLPFMRSDAEAFSMDK   73 (127)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESSS--------------------TTCEEEEEEGGGGGGGGSTTCCCCCHHH
T ss_pred             HeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC--------------------CCcEEEEEEHHHHHHHHhccCCCCCHHH
Confidence            34678889999999999999999999999732                    1479999999999987752      777


Q ss_pred             cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297           89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  159 (379)
Q Consensus        89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~  159 (379)
                      +..+    ...+.|+++|.||++.|. +++++++|+++..+-               .=++|++||+++|.+
T Consensus        74 ~m~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~---------------~Giit~~dll~~l~g  126 (127)
T 3nqr_A           74 VLRT----AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGV---------------SGLVTIEDILELIVG  126 (127)
T ss_dssp             HCBC----CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCE---------------EEEEEHHHHHHHC--
T ss_pred             HcCC----CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCE---------------EEEEEHHHHHHHHhC
Confidence            7632    357999999999999999 699999998643221               119999999999864

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.43  E-value=3e-07  Score=76.28  Aligned_cols=122  Identities=14%  Similarity=0.121  Sum_probs=85.3

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL  163 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~  163 (379)
                      |+++..+   .+..+.|++++.||++.|. +|.+.++|+++. -.+              -.=++|..|+++++......
T Consensus        15 v~dim~~---~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~--------------~~Givt~~dl~~~~~~~~~~   77 (164)
T 2pfi_A           15 VEHFMNH---SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQI--------------LVGIVQRAQLVQALQAEPPS   77 (164)
T ss_dssp             HHHHCBC---CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCB--------------EEEEEEHHHHHHHHHC----
T ss_pred             HHHHcCC---CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCE--------------EEEEEEHHHHHHHHHhhccc
Confidence            5555543   3566899999999999999 589999998751 111              11299999999998764333


Q ss_pred             cCCCCCCccccccc----ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          164 LNPTPNQPINSHNI----IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       164 l~p~p~~SI~sLG~----I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ..+....++.++-.    +++. +..|+.+++..+|++.|.+.  +...+|||| +|+++|-|+..||-
T Consensus        78 ~~~~~~~~v~~~m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd-~g~l~Giit~~dil  142 (164)
T 2pfi_A           78 RAPGHQQCLQDILARGCPTEPV-TLTLFSETTLHQAQNLFKLL--NLQSLFVTS-RGRAVGCVSWVEMK  142 (164)
T ss_dssp             ---CCCCBHHHHHHTTCCCBCC-CCCEETTCBHHHHHHHHHHT--TCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred             cCCcccchhhhhhcccccccCC-ceEECCCCcHHHHHHHHHHh--CCCEEEEEE-CCEEEEEEEHHHHH
Confidence            22333344444321    1122 67899999999999999875  458999999 89999999988774

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.43  E-value=4.1e-07  Score=72.17  Aligned_cols=106  Identities=11%  Similarity=0.075  Sum_probs=83.6

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|++++-||++.|. +|.+.++|++ ..+-               .=++|..|+++++.+...    ....++.++
T Consensus        11 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~---------------~G~it~~dl~~~~~~~~~----~~~~~v~~~   70 (125)
T 1pbj_A           11 VDTIDITASLEDVLRNYVENAKGSSVVVK-EGVR---------------VGIVTTWDVLEAIAEGDD----LAEVKVWEV   70 (125)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEE---------------EEEEEHHHHHHHHHHTCC----TTTSBHHHH
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCee---------------EEEEeHHHHHHHHhcCCc----ccccCHHHH
Confidence            567899999999999999 5888988887 2111               129999999999876432    234455553


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..++.+++..+|++.|.+.  +...+||+|. |+++|-||..||-
T Consensus        71 --m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~-~~~~Gvit~~dl~  117 (125)
T 1pbj_A           71 --MERD-LVTISPRATIKEAAEKMVKN--VVWRLLVEED-DEIIGVISATDIL  117 (125)
T ss_dssp             --CBCG-GGEECTTSCHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHH
T ss_pred             --cCCC-CeEECCCCCHHHHHHHHHhc--CCcEEEEEEC-CEEEEEEEHHHHH
Confidence              3456 89999999999999999886  4589999998 9999999988763

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.43  E-value=3e-07  Score=75.16  Aligned_cols=108  Identities=13%  Similarity=0.119  Sum_probs=83.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++-||++.|. +|..+++|++....+        .      .=++|..|+++++.+.-    +....++.++
T Consensus        14 ~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~--------l------vGivt~~dl~~~~~~~~----~~~~~~v~~~   75 (130)
T 3hf7_A           14 IVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDD--------A------ISMLRVREAYRLMTEKK----EFTKEIMLRA   75 (130)
T ss_dssp             CCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGG--------E------EEEEEHHHHHHHHTSSS----CCCHHHHHHH
T ss_pred             EEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCc--------E------EEEEEHHHHHHHHhccC----ccchhhHHHh
Confidence            678999999999999999 688999997542111        0      11899999999986532    1223345554


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        . ++ +..|..+++..+|++.|.+.  +...+||||.+|+++|=|+..||-
T Consensus        76 --m-~~-~~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~g~lvGiit~~Dil  122 (130)
T 3hf7_A           76 --A-DE-IYFVPEGTPLSTQLVKFQRN--KKKVGLVVDEYGDIQGLVTVEDIL  122 (130)
T ss_dssp             --S-BC-CCEEETTCBHHHHHHHHHHH--CCCEEEEECTTSCEEEEEEHHHHH
T ss_pred             --c-cC-CeEeCCCCcHHHHHHHHHhc--CCeEEEEEcCCCCEEEEeeHHHHH
Confidence              2 56 78999999999999999885  447899999999999999988763

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.42  E-value=3.2e-07  Score=76.00  Aligned_cols=120  Identities=17%  Similarity=0.208  Sum_probs=86.7

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-c
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-L  163 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~  163 (379)
                      |+++..+. ..+..+.|++++.||++.|. +|+++++|++...+-               .=++|..|+++++...-. .
T Consensus        13 v~~im~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~---------------~Givt~~dl~~~~~~~~~~~   76 (157)
T 2emq_A           13 VKPFLIPA-DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKL---------------HGLISMTMMMDAILGLERIE   76 (157)
T ss_dssp             STTTCEEG-GGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCE---------------EEEEEHHHHHHHSBCSSSBC
T ss_pred             HHhhccCC-ccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCE---------------EEEeeHHHHHHHHhcccccc
Confidence            45554321 13567999999999999999 689999998742211               129999999998764210 0


Q ss_pred             cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +......++.++  .+++ +..|+.+++..+|++.|.+.  + . +||||.+|+++|-||..||-
T Consensus        77 ~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~-~-l~Vvd~~g~~~Giit~~dil  134 (157)
T 2emq_A           77 FERLETMKVEEV--MNRN-IPRLRLDDSLMKAVGLIVNH--P-F-VCVENDDGYFAGIFTRREVL  134 (157)
T ss_dssp             GGGGGTCBGGGT--CBCC-CCEEETTSBHHHHHHHHHHS--S-E-EEEECSSSSEEEEEEHHHHH
T ss_pred             hHHhcCCcHHHH--hCCC-CceecCCCcHHHHHHHHhhC--C-E-EEEEcCCCeEEEEEEHHHHH
Confidence            011234555553  4567 89999999999999999875  2 2 99999999999999887764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.40  E-value=4.2e-07  Score=75.35  Aligned_cols=127  Identities=9%  Similarity=0.054  Sum_probs=85.7

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC--CCcEEeeeCccccCCCcHHHHHHHHhcchhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE--EGRLVGDISPFSLNSCDETVAAAIATLLAGDL  246 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~--dGkLIGeISa~~L~~CDet~a~A~atLSAgdf  246 (379)
                      ..++.++  .+++ +..++.+++..+|+++|.+.  ..+.+||||.  +|+++|-|+..+|....       ..   + .
T Consensus        12 ~~~v~di--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~pVvd~~~~~~~~Givt~~dl~~~~-------~~---~-~   75 (164)
T 2pfi_A           12 HVRVEHF--MNHS-ITTLAKDTPLEEVVKVVTST--DVTEYPLVESTESQILVGIVQRAQLVQAL-------QA---E-P   75 (164)
T ss_dssp             SCBHHHH--CBCC-CCCEETTCBHHHHHHHHHTC--CCSEEEEESCTTTCBEEEEEEHHHHHHHH-------HC------
T ss_pred             CCCHHHH--cCCC-CeEECCCCcHHHHHHHHHhC--CCCceeEEecCCCCEEEEEEEHHHHHHHH-------Hh---h-c
Confidence            4455543  4566 88999999999999999875  4589999997  78999999988874311       00   0 0


Q ss_pred             hhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceee
Q 041297          247 MAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVC  326 (379)
Q Consensus       247 ~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC  326 (379)
                      -.+...   .+               ....+.|...     .                             .....+++|
T Consensus        76 ~~~~~~---~~---------------~~v~~~m~~~-----~-----------------------------~~~~~~~~v  103 (164)
T 2pfi_A           76 PSRAPG---HQ---------------QCLQDILARG-----C-----------------------------PTEPVTLTL  103 (164)
T ss_dssp             -----C---CC---------------CBHHHHHHTT-----C-----------------------------CCBCCCCCE
T ss_pred             cccCCc---cc---------------chhhhhhccc-----c-----------------------------cccCCceEE
Confidence            000000   00               0000011000     0                             011126899


Q ss_pred             cCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          327 YPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       327 ~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .+..+|.+++..+..|+++++.|+| +|.++|+|+..-
T Consensus       104 ~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~d  140 (164)
T 2pfi_A          104 FSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVE  140 (164)
T ss_dssp             ETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             CCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHH
Confidence            9999999999999999999999999 899999999654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.40  E-value=5.3e-07  Score=77.67  Aligned_cols=118  Identities=16%  Similarity=0.207  Sum_probs=89.8

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++..+   .+..+.|+++|.||++.|. ++.++++|++...+-               .=++|..|+++++...-.. 
T Consensus        11 v~~im~~---~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~---------------vGivt~~dl~~~~~~~~~~-   71 (184)
T 1pvm_A           11 VEKIMNS---NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGND---------------VGLLSERSIIKRFIPRNKK-   71 (184)
T ss_dssp             GGGTSBT---TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCE---------------EEEEEHHHHHHHTGGGCCC-
T ss_pred             HHHhcCC---CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEEeHHHHHHHHhhcccC-
Confidence            5555542   3667999999999999999 699999998642111               1299999999988753111 


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                        ....++.++  .+++ +..|..+++..+|++.|.+.  +...+||||.+|+++|-||..||-.
T Consensus        72 --~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~~Givt~~dll~  129 (184)
T 1pvm_A           72 --PDEVPIRLV--MRKP-IPKVKSDYDVKDVAAYLSEN--GLERCAVVDDPGRVVGIVTLTDLSR  129 (184)
T ss_dssp             --GGGSBGGGT--SBSS-CCEEETTCBHHHHHHHHHHH--TCSEEEEECTTCCEEEEEEHHHHTT
T ss_pred             --cccCCHHHH--hCCC-CcEECCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHHH
Confidence              123445543  3466 89999999999999999886  4588999999999999999999865

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.40  E-value=2.8e-07  Score=76.72  Aligned_cols=108  Identities=15%  Similarity=0.253  Sum_probs=85.0

Q ss_pred             ceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297           96 IVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN  173 (379)
Q Consensus        96 ll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~  173 (379)
                      -+..+.|++++.||++.|. ++.+.++|.+++ ...                 ++|..|+++++...-.   .....++.
T Consensus        22 ~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~G-----------------ivt~~dl~~~~~~~~~---~~~~~~v~   81 (157)
T 4fry_A           22 TIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAG-----------------IVTERDYARKVVLQER---SSKATRVE   81 (157)
T ss_dssp             CCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEE-----------------EEEHHHHHHHSGGGTC---CSSSCBHH
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEE-----------------EEEHHHHHHHHHhccC---CccccCHH
Confidence            4778999999999999998 688888885421 122                 9999999999876432   22355566


Q ss_pred             ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ++  .+++ +..|+.+++..+|++.|.+.  +...+|||| +|+++|-|+..||-.
T Consensus        82 ~~--m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd-~g~~~Giit~~dil~  131 (157)
T 4fry_A           82 EI--MTAK-VRYVEPSQSTDECMALMTEH--RMRHLPVLD-GGKLIGLISIGDLVK  131 (157)
T ss_dssp             HH--SBSS-CCCBCTTSBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHH
T ss_pred             HH--cCCC-CcEECCCCcHHHHHHHHHHc--CCCEEEEEE-CCEEEEEEEHHHHHH
Confidence            53  4566 88999999999999999886  458999999 899999998877643

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.39  E-value=6e-07  Score=73.74  Aligned_cols=108  Identities=11%  Similarity=0.110  Sum_probs=83.6

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhh
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKD  258 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~  258 (379)
                      ++ +..++.++++.+|+++|++.  ..+.+||++.+ |+++|-|+..||...-.                  ...     
T Consensus        13 ~~-~~~v~~~~~v~~a~~~m~~~--~~~~~pVvd~~~~~~vGivt~~dl~~~~~------------------~~~-----   66 (136)
T 3lfr_A           13 SQ-MISIKATQTPREFLPAVIDA--AHSRYPVIGESHDDVLGVLLAKDLLPLIL------------------KAD-----   66 (136)
T ss_dssp             GG-CCCEETTCCHHHHHHHHHHH--CCSEEEEESSSTTCEEEEEEGGGGGGGGG------------------SSS-----
T ss_pred             HH-EEEEcCCCCHHHHHHHHHhC--CCCEEEEEcCCCCcEEEEEEHHHHHHHHH------------------hcc-----
Confidence            45 88999999999999999986  55899999998 89999999988865110                  000     


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHH
Q 041297          259 LVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQ  338 (379)
Q Consensus       259 l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQ  338 (379)
                                            ..   . .+      - .+.                +   ++++++.+..+|.+++..
T Consensus        67 ----------------------~~---~-~~------v-~~~----------------m---~~~~~v~~~~~l~~~~~~   94 (136)
T 3lfr_A           67 ----------------------GD---S-DD------V-KKL----------------L---RPATFVPESKRLNVLLRE   94 (136)
T ss_dssp             ----------------------GG---G-CC------G-GGT----------------C---BCCCEEETTCBHHHHHHH
T ss_pred             ----------------------CC---C-cC------H-HHH----------------c---CCCeEECCCCcHHHHHHH
Confidence                                  00   0 00      0 000                1   127899999999999999


Q ss_pred             HHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          339 ALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       339 AlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      +..|+.+++=|+|++|.++|+|+..--
T Consensus        95 m~~~~~~~~~Vvd~~g~lvGiit~~Di  121 (136)
T 3lfr_A           95 FRANHNHMAIVIDEYGGVAGLVTIEDV  121 (136)
T ss_dssp             HHHHTCCEEEEECTTSCEEEEEEHHHH
T ss_pred             HHhcCCeEEEEEeCCCCEEEEEEHHHH
Confidence            999999999999999999999987543

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.39  E-value=7.4e-07  Score=72.21  Aligned_cols=115  Identities=21%  Similarity=0.318  Sum_probs=85.5

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++..+   .+..+.|++++-||++.|. +|...++|++...+-               .=++|..|+++.++..-   
T Consensus         9 v~~im~~---~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~---   67 (138)
T 2yzi_A            9 IKVYMTK---KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNV---------------VGFFTKSDIIRRVIVPG---   67 (138)
T ss_dssp             GGGTCBC---CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHTTTTC---
T ss_pred             HHHHhcC---CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEEeHHHHHHHHHhcC---
Confidence            4454432   3567999999999999998 689999998742211               11999999986543321   


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                       .....++.++  .+++ +..++.+++..+|++.|.+.  +...+ |||.+|+++|-|+..||-
T Consensus        68 -~~~~~~v~~~--m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l-Vvd~~g~~~Giit~~dil  124 (138)
T 2yzi_A           68 -LPYDIPVERI--MTRN-LITANVNTPLGEVLRKMAEH--RIKHI-LIEEEGKIVGIFTLSDLL  124 (138)
T ss_dssp             -CCTTSBGGGT--CBCS-CCEEETTSBHHHHHHHHHHH--TCSEE-EEEETTEEEEEEEHHHHH
T ss_pred             -CcccCCHHHH--hhCC-CeEECCCCcHHHHHHHHHhc--CCCEE-EECCCCCEEEEEEHHHHH
Confidence             1235566654  4567 89999999999999999876  44778 999999999999988764

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.38  E-value=3e-07  Score=76.84  Aligned_cols=120  Identities=13%  Similarity=0.152  Sum_probs=87.2

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-c
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-L  163 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~  163 (379)
                      |+++..+. .-+..+.|++++.||++.|. +|...++|++...+-               .=++|..|+++++.+.-. .
T Consensus        16 v~~im~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~l---------------vGivt~~dl~~~~~~~~~~~   79 (159)
T 1yav_A           16 VGQFMIEA-DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRL---------------HGLIGTNMIMNSIFGLERIE   79 (159)
T ss_dssp             HHHHSEEG-GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBE---------------EEEEEHHHHHHHHBCSSSBC
T ss_pred             HHHHhCCc-cceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCE---------------EEEeEHHHHHHHhhhhcccc
Confidence            55555421 13567899999999999998 699999998753221               129999999999865311 1


Q ss_pred             cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +......++.++  .+++ +..|..+++..+|++.|.+.   .- +||||.+|+++|-|+..||-
T Consensus        80 ~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~---~~-lpVvd~~g~~vGiit~~dil  137 (159)
T 1yav_A           80 FEKLDQITVEEV--MLTD-IPRLHINDPIMKGFGMVINN---GF-VCVENDEQVFEGIFTRRVVL  137 (159)
T ss_dssp             GGGTTTSBHHHH--SBCS-CCEEETTSBHHHHHHHTTTC---SE-EEEECTTCBEEEEEEHHHHH
T ss_pred             hhhhccCCHHHh--cCCC-CceEcCCCCHHHHHHHHHhC---CE-EEEEeCCCeEEEEEEHHHHH
Confidence            111334556553  4567 89999999999999999764   22 99999999999999887764

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.37  E-value=4.9e-07  Score=74.98  Aligned_cols=117  Identities=18%  Similarity=0.162  Sum_probs=90.1

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++..+. ..+..+.|++++.||++.|. +|...++|++...+-               .=++|..|+++++....   
T Consensus        30 v~dim~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~---   90 (149)
T 3k2v_A           30 VNDIMHTG-DEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNI---------------IGIFTDGDLRRVFDTGV---   90 (149)
T ss_dssp             GGGTSBCG-GGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBE---------------EEEEEHHHHHHHHCSSS---
T ss_pred             HHHHhcCC-CCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcE---------------EEEecHHHHHHHHhcCC---
Confidence            67776531 13678999999999999999 689999998743221               11999999999886532   


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                       .....++.++  .+++ +..|+.+++..+|++.|.+.  +...+||||.+ +++|-|+..||-
T Consensus        91 -~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~-~~~Giit~~dil  147 (149)
T 3k2v_A           91 -DMRDASIADV--MTRG-GIRIRPGTLAVDALNLMQSR--HITCVLVADGD-HLLGVVHMHDLL  147 (149)
T ss_dssp             -CCTTCBHHHH--SEES-CCEECTTCBHHHHHHHHHHH--TCSEEEEEETT-EEEEEEEHHHHT
T ss_pred             -CcccCcHHHH--cCCC-CeEECCCCCHHHHHHHHHHc--CCCEEEEecCC-EEEEEEEHHHhh
Confidence             2345566654  4566 88999999999999999886  45889999977 999999988864

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.37  E-value=9.5e-07  Score=74.81  Aligned_cols=122  Identities=11%  Similarity=0.165  Sum_probs=88.7

Q ss_pred             ccccccCC-CCceEEe--CCCCchhHHHHHHh-cCccEEEEec--CCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297           86 CFCSFAKD-SGIVRHL--KPSASLLEAVDLLL-GGVQNLVILP--AGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  159 (379)
Q Consensus        86 VS~li~~~-~gll~~V--~P~tsLLdAie~m~-~G~~rllVi~--s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~  159 (379)
                      |+++.-+. +..+..|  .|++++.||++.|. +|.++++|++  ...+-               .=++|..|+++++..
T Consensus        13 v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~l---------------vGiit~~dl~~~~~~   77 (185)
T 2j9l_A           13 AMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRL---------------VGFVLRRDLIISIEN   77 (185)
T ss_dssp             HHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBE---------------EEEEEHHHHHHHHHH
T ss_pred             HHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeE---------------EEEEEHHHHHHHHHh
Confidence            55665432 1225567  99999999999999 6899998883  32111               128999999999876


Q ss_pred             hhcc-----------c---------CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEE
Q 041297          160 FIGL-----------L---------NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLV  219 (379)
Q Consensus       160 ~ig~-----------l---------~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLI  219 (379)
                      .-..           |         ......++.++  .+++ +..|+.+++..+|++.|.+.  +...+|||| +|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd-~g~~v  151 (185)
T 2j9l_A           78 ARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNI--LDLS-PFTVTDLTPMEIVVDIFRKL--GLRQCLVTH-NGRLL  151 (185)
T ss_dssp             HHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGG--EESS-CCEEETTSBHHHHHHHHHHH--TCSEEEEEE-TTEEE
T ss_pred             hcccCCCccccceeecccCCcccccccccCccHHHh--hCcC-CeEeCCCCCHHHHHHHHHhC--CCcEEEEEE-CCEEE
Confidence            4211           0         11234455543  5567 99999999999999999875  458899999 99999


Q ss_pred             eeeCccccC
Q 041297          220 GDISPFSLN  228 (379)
Q Consensus       220 GeISa~~L~  228 (379)
                      |-|+..||-
T Consensus       152 Giit~~dll  160 (185)
T 2j9l_A          152 GIITKKDVL  160 (185)
T ss_dssp             EEEEHHHHH
T ss_pred             EEEEHHHHH
Confidence            999887764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.36  E-value=8e-07  Score=72.98  Aligned_cols=108  Identities=11%  Similarity=0.043  Sum_probs=84.7

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------cc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------CF   87 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------VS   87 (379)
                      +-+++....|+.+|++.+.+++...+||-+.+                    .++++|+|+.-|++-++.+       |+
T Consensus        14 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~--------------------~~~~vGivt~~dl~~~~~~~~~~~~~v~   73 (136)
T 3lfr_A           14 QMISIKATQTPREFLPAVIDAAHSRYPVIGES--------------------HDDVLGVLLAKDLLPLILKADGDSDDVK   73 (136)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESSS--------------------TTCEEEEEEGGGGGGGGGSSSGGGCCGG
T ss_pred             HEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC--------------------CCcEEEEEEHHHHHHHHHhccCCCcCHH
Confidence            34677889999999999999999999998732                    1479999999999987762       67


Q ss_pred             ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297           88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI  161 (379)
Q Consensus        88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i  161 (379)
                      ++..   . +..+.|+++|.||++.|. +|+++++|++...+-.               =++|+.||++.|.+-+
T Consensus        74 ~~m~---~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lv---------------Giit~~Dil~~l~~~~  129 (136)
T 3lfr_A           74 KLLR---P-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVA---------------GLVTIEDVLEQIVGDI  129 (136)
T ss_dssp             GTCB---C-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEE---------------EEEEHHHHHTTC----
T ss_pred             HHcC---C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE---------------EEEEHHHHHHHHhCCC
Confidence            7663   2 678999999999999999 6999999986432211               1999999999988754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.35  E-value=5e-07  Score=73.15  Aligned_cols=107  Identities=18%  Similarity=0.316  Sum_probs=82.3

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..+.|++++.||++.|. +|...++|+++ .+-               .=++|..|+++++...-.   .....++.++
T Consensus        19 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~---------------~Givt~~dl~~~~~~~~~---~~~~~~v~~~   79 (135)
T 2rc3_A           19 VVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKL---------------VGILTERDFSRKSYLLDK---PVKDTQVKEI   79 (135)
T ss_dssp             CCEECTTSBHHHHHHHHHHHTCSEEEEEET-TEE---------------EEEEEHHHHHHHGGGSSS---CGGGSBGGGT
T ss_pred             cEEECCCCcHHHHHHHHHhcCCCEEEEEEC-CEE---------------EEEEehHHHHHHHHHcCC---CcccCCHHHh
Confidence            567999999999999998 68889988862 111               129999999986654311   1234455553


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        .+++ +..|+.+++..+|++.|.+.  ....+|||| +|+++|-|+..||-
T Consensus        80 --m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd-~g~~~Giit~~dll  126 (135)
T 2rc3_A           80 --MTRQ-VAYVDLNNTNEDCMALITEM--RVRHLPVLD-DGKVIGLLSIGDLV  126 (135)
T ss_dssp             --SBCS-CCCBCTTCBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred             --ccCC-CeEECCCCcHHHHHHHHHHh--CCCEEEEEe-CCEEEEEEEHHHHH
Confidence              4466 88999999999999999876  448899999 89999999988764

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.34  E-value=1.2e-06  Score=76.00  Aligned_cols=114  Identities=11%  Similarity=0.029  Sum_probs=87.9

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++.-+. .-+..|+|++++-||++.|. +|..+++|++....+              -.=++|..|+++++...    
T Consensus        38 v~diM~~~-~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~--------------lvGivt~~Dl~~~~~~~----   98 (173)
T 3ocm_A           38 IRSIMTPR-TDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDE--------------VVGIGRAKDLVADLITE----   98 (173)
T ss_dssp             STTTSEEG-GGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTS--------------EEEEEEHHHHHHHHHHH----
T ss_pred             HHHhCCcH-HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCC--------------EEEEEEHHHHHHHHhcC----
Confidence            66666321 23677999999999999999 689999997643111              01199999999998764    


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                         ...++.    +.++ +..|..++++.+|++.|.+.  +...+||||.+|+++|=|+..|+-
T Consensus        99 ---~~~~v~----~~~~-~~~v~~~~~l~~al~~m~~~--~~~~~~Vvde~g~lvGiIT~~Dil  152 (173)
T 3ocm_A           99 ---GRVRRN----RLRD-PIIVHESIGILRLMDTLKRS--RGQLVLVADEFGAIEGLVTPIDVF  152 (173)
T ss_dssp             ---SSCCGG----GSBC-CCEECGGGCHHHHHHHHHHS--TTCCEEEECTTCCEEEEECHHHHH
T ss_pred             ---CcchhH----hcCC-CeEECCCCcHHHHHHHHHHc--CCeEEEEEeCCCCEEEEEeHHHHH
Confidence               133444    4566 88999999999999999885  447899999999999999988764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.31  E-value=9.5e-07  Score=73.09  Aligned_cols=129  Identities=11%  Similarity=0.041  Sum_probs=87.4

Q ss_pred             CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      ...++.++-.-.++ +..|+.+++..+|++.|.+.  ..+.+||||.+|+++|-|+..+|...                 
T Consensus         9 ~~~~v~~im~~~~~-~~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~~Givt~~dl~~~-----------------   68 (157)
T 2emq_A            9 MQMTVKPFLIPADK-VAHVQPGNYLDHALLVLTKT--GYSAIPVLDTSYKLHGLISMTMMMDA-----------------   68 (157)
T ss_dssp             -CCBSTTTCEEGGG-SCCBCTTSBHHHHHHHHHHS--SSSEEEEECTTCCEEEEEEHHHHHHH-----------------
T ss_pred             hhCcHHhhccCCcc-ceEECCCCcHHHHHHHHHHC--CceEEEEEcCCCCEEEEeeHHHHHHH-----------------
Confidence            34556654321126 88999999999999999886  45899999999999999988777431                 


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                        +..+..           +.   ..    ..      ...                 .        .+.--...++++.
T Consensus        69 --~~~~~~-----------~~---~~----~~------~~~-----------------~--------v~~~m~~~~~~v~   97 (157)
T 2emq_A           69 --ILGLER-----------IE---FE----RL------ETM-----------------K--------VEEVMNRNIPRLR   97 (157)
T ss_dssp             --SBCSSS-----------BC---GG----GG------GTC-----------------B--------GGGTCBCCCCEEE
T ss_pred             --Hhcccc-----------cc---hH----Hh------cCC-----------------c--------HHHHhCCCCceec
Confidence              000000           00   00    00      000                 0        0000123578999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehhhHHH
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQL  369 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~~~~  369 (379)
                      +..+|.+++..+..|++  +.|+|++|.++|+|+...--..+
T Consensus        98 ~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~  137 (157)
T 2emq_A           98 LDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQL  137 (157)
T ss_dssp             TTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHH
T ss_pred             CCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHH
Confidence            99999999999999998  99999999999999975433333

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.31  E-value=1.5e-06  Score=77.86  Aligned_cols=117  Identities=13%  Similarity=0.131  Sum_probs=89.7

Q ss_pred             CCCCcccccccccCCcEEEEecCCchhcHHHHHHhccc-cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhh
Q 041297          167 TPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI-KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGD  245 (379)
Q Consensus       167 ~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~-~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgd  245 (379)
                      .+..|+.++  .+++ +.+|+.+.++-+|++.|++... ....++|||.+|+++|-|+..+|...+.       ...+.|
T Consensus        51 ~~~~~v~~i--M~~~-~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~-------~~~v~~  120 (205)
T 3kxr_A           51 YSENEIGRY--TDHQ-MLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHEP-------HEPLIS  120 (205)
T ss_dssp             SCTTCGGGG--CBCC-CCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSCT-------TSBGGG
T ss_pred             CCcchHHhh--ccCc-eEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCCC-------cchHHH
Confidence            345556543  4677 9999999999999999998211 4578999999999999999888754210       000000


Q ss_pred             hhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcccee
Q 041297          246 LMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIV  325 (379)
Q Consensus       246 f~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vt  325 (379)
                      +                                                                        =...+++
T Consensus       121 i------------------------------------------------------------------------m~~~~~~  128 (205)
T 3kxr_A          121 L------------------------------------------------------------------------LSEDSRA  128 (205)
T ss_dssp             G------------------------------------------------------------------------CCSSCCC
T ss_pred             H------------------------------------------------------------------------hcCCCeE
Confidence            0                                                                        1134689


Q ss_pred             ecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          326 CYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       326 C~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      +++..++.+++..+..|+.+++=|||++|.++|+|++.--
T Consensus       129 v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Di  168 (205)
T 3kxr_A          129 LTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAA  168 (205)
T ss_dssp             EETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHH
T ss_pred             ECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence            9999999999999999999999999999999999997643

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.31  E-value=3.2e-07  Score=76.32  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=79.4

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL  259 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l  259 (379)
                      ++ +..|..++++.+|+++|.+.  ..+.+||+| +|+++|-|+..+|...                   +..       
T Consensus        21 ~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~V~~-~~~~~Givt~~dl~~~-------------------~~~-------   70 (157)
T 4fry_A           21 RT-IYTVTKNDFVYDAIKLMAEK--GIGALLVVD-GDDIAGIVTERDYARK-------------------VVL-------   70 (157)
T ss_dssp             CC-CCEEETTSBHHHHHHHHHHH--TCSEEEEES-SSSEEEEEEHHHHHHH-------------------SGG-------
T ss_pred             CC-CeEECCCCcHHHHHHHHHHc--CCCEEEEee-CCEEEEEEEHHHHHHH-------------------HHh-------
Confidence            55 89999999999999999876  458899965 8999999988777431                   000       


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297          260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA  339 (379)
Q Consensus       260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA  339 (379)
                                ++..       ..   . .      .. .+.                  -..+++++.+..+|.+++..+
T Consensus        71 ----------~~~~-------~~---~-~------~v-~~~------------------m~~~~~~v~~~~~l~~~~~~m  104 (157)
T 4fry_A           71 ----------QERS-------SK---A-T------RV-EEI------------------MTAKVRYVEPSQSTDECMALM  104 (157)
T ss_dssp             ----------GTCC-------SS---S-C------BH-HHH------------------SBSSCCCBCTTSBHHHHHHHH
T ss_pred             ----------ccCC-------cc---c-c------CH-HHH------------------cCCCCcEECCCCcHHHHHHHH
Confidence                      0000       00   0 0      00 000                  113478999999999999999


Q ss_pred             HHcCCcEEEEeeCCCCcccceEeeh
Q 041297          340 LARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       340 laHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      ..|+++++.|+| +|.++|+|+...
T Consensus       105 ~~~~~~~lpVvd-~g~~~Giit~~d  128 (157)
T 4fry_A          105 TEHRMRHLPVLD-GGKLIGLISIGD  128 (157)
T ss_dssp             HHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             HHcCCCEEEEEE-CCEEEEEEEHHH
Confidence            999999999999 899999998654

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.30  E-value=1.1e-06  Score=75.03  Aligned_cols=110  Identities=15%  Similarity=0.172  Sum_probs=83.7

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      |=+++....|+++|+..|.+++.+.+||.+.                     .++++|+|+.-||+-++..         
T Consensus        26 ~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---------------------~~~lvGiit~~Di~~~~~~~~~~~~~~~   84 (156)
T 3k6e_A           26 NLAVLIDTHNADHATLLLSQMTYTRVPVVTD---------------------EKQFVGTIGLRDIMAYQMEHDLSQEIMA   84 (156)
T ss_dssp             SSCCEETTSBHHHHHHHHTTSSSSEEEEECC----------------------CBEEEEEEHHHHHHHHHHHTCCHHHHT
T ss_pred             HeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---------------------CCcEEEEEEecchhhhhhhccccccccc
Confidence            4456788899999999999999999999973                     2469999999999877653         


Q ss_pred             ---ccccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297           86 ---CFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG  162 (379)
Q Consensus        86 ---VS~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig  162 (379)
                         |+++..   -.+..+.|++++.+|++.|.+. +.++|++...+-.         .      ++|++||++.+.+-+.
T Consensus        85 ~~~v~~im~---~~~~~v~~~~~l~~~~~~m~~~-~~lpVVd~~g~l~---------G------iiT~~Dil~~~~~~~~  145 (156)
T 3k6e_A           85 DTDIVHMTK---TDVAVVSPDFTITEVLHKLVDE-SFLPVVDAEGIFQ---------G------IITRKSILKAVNALLH  145 (156)
T ss_dssp             TSBGGGTCB---CSCCCBCTTCCHHHHHHHTTTS-SEEEEECTTSBEE---------E------EEEHHHHHHHHHHHSC
T ss_pred             ccCHHHhhc---CCceecccccHHHHHHHHHHHc-CCeEEEecCCEEE---------E------EEEHHHHHHHHHHHhc
Confidence               455543   2367899999999999999963 3366675432211         1      9999999999987665


Q ss_pred             cc
Q 041297          163 LL  164 (379)
Q Consensus       163 ~l  164 (379)
                      .+
T Consensus       146 ~~  147 (156)
T 3k6e_A          146 DF  147 (156)
T ss_dssp             C-
T ss_pred             cc
Confidence            54

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.29  E-value=2.3e-06  Score=70.39  Aligned_cols=109  Identities=14%  Similarity=0.050  Sum_probs=84.2

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      +-+++....|+.+|++.+.+++...+||.+.+                     ++++|+|+.-||+-++..         
T Consensus        26 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~---------------------~~~~Givt~~dl~~~~~~~~~~~~~~~   84 (150)
T 3lqn_A           26 KVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM---------------------YKLHGLISTAMILDGILGLERIEFERL   84 (150)
T ss_dssp             GSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---------------------CBEEEEEEHHHHHHHTBCSSSBCGGGG
T ss_pred             ceEEECCCCcHHHHHHHHHHcCCcEEEEECCC---------------------CCEEEEEEHHHHHHHHHhhcccchhHH
Confidence            45678889999999999999999999999732                     469999999999877641         


Q ss_pred             ----ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhh
Q 041297           86 ----CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNF  160 (379)
Q Consensus        86 ----VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~  160 (379)
                          |+++..+   .+..+.|+++|.||++.|. +++  ++|++...+-               .=++|+.||+++|.+.
T Consensus        85 ~~~~v~~~m~~---~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~---------------~Giit~~dil~~l~~~  144 (150)
T 3lqn_A           85 EEMKVEQVMKQ---DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYF---------------EGILTRRAILKLLNKK  144 (150)
T ss_dssp             GGCBGGGTCBS---SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBE---------------EEEEEHHHHHHHHHHH
T ss_pred             hcCCHHHHhcC---CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcE---------------EEEEEHHHHHHHHHHH
Confidence                6666542   3678999999999999999 454  6667632211               1199999999999987


Q ss_pred             hccc
Q 041297          161 IGLL  164 (379)
Q Consensus       161 ig~l  164 (379)
                      +..+
T Consensus       145 ~~~~  148 (150)
T 3lqn_A          145 VRQH  148 (150)
T ss_dssp             C---
T ss_pred             hHhh
Confidence            7654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.29  E-value=7.7e-07  Score=74.39  Aligned_cols=124  Identities=10%  Similarity=0.047  Sum_probs=86.8

Q ss_pred             CCCCcccccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchh
Q 041297          167 TPNQPINSHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAG  244 (379)
Q Consensus       167 ~p~~SI~sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAg  244 (379)
                      +...++.++  ..+  + +..|..++++.+|++.|.+.  ..+.+||||.+|+++|-|+..+|...       +..  -.
T Consensus        11 l~~~~v~~i--m~~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~~pVvd~~~~lvGivt~~dl~~~-------~~~--~~   76 (159)
T 1yav_A           11 LLEATVGQF--MIEADK-VAHVQVGNNLEHALLVLTKT--GYTAIPVLDPSYRLHGLIGTNMIMNS-------IFG--LE   76 (159)
T ss_dssp             CTTCBHHHH--SEEGGG-SCCEETTCBHHHHHHHHHHH--CCSEEEEECTTCBEEEEEEHHHHHHH-------HBC--SS
T ss_pred             HhHhhHHHH--hCCccc-eEEECCCCcHHHHHHHHHhC--CCcEEEEECCCCCEEEEeEHHHHHHH-------hhh--hc
Confidence            445666664  334  6 89999999999999999885  45899999999999999988877430       000  00


Q ss_pred             hhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccce
Q 041297          245 DLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAI  324 (379)
Q Consensus       245 df~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~v  324 (379)
                      +|    +.                           .     . .         .             ....+.--...++
T Consensus        77 ~~----~~---------------------------~-----~-~---------~-------------~~~v~~~m~~~~~   97 (159)
T 1yav_A           77 RI----EF---------------------------E-----K-L---------D-------------QITVEEVMLTDIP   97 (159)
T ss_dssp             SB----CG---------------------------G-----G-T---------T-------------TSBHHHHSBCSCC
T ss_pred             cc----ch---------------------------h-----h-h---------c-------------cCCHHHhcCCCCc
Confidence            00    00                           0     0 0         0             0000000112578


Q ss_pred             eecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          325 VCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       325 tC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      ++.+..+|.+++..+..+++  +.|+|++|.++|+|+...-
T Consensus        98 ~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~di  136 (159)
T 1yav_A           98 RLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVV  136 (159)
T ss_dssp             EEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHH
T ss_pred             eEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHH
Confidence            99999999999999999987  9999999999999997543

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.27  E-value=1.6e-06  Score=70.87  Aligned_cols=108  Identities=6%  Similarity=0.010  Sum_probs=84.9

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------c
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------C   86 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------V   86 (379)
                      +-+++....|+.+|++.+.+++...+||-+-+                    .++++|+|+.-|++-++.+        |
T Consensus        13 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~--------------------~~~lvGivt~~dl~~~~~~~~~~~~~~v   72 (130)
T 3hf7_A           13 EIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS--------------------LDDAISMLRVREAYRLMTEKKEFTKEIM   72 (130)
T ss_dssp             GCCEEETTSCHHHHHHHHHTCSSSEEEEESSS--------------------GGGEEEEEEHHHHHHHHTSSSCCCHHHH
T ss_pred             HEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--------------------CCcEEEEEEHHHHHHHHhccCccchhhH
Confidence            44678889999999999999999999998621                    2479999999999877653        5


Q ss_pred             cccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297           87 FCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI  161 (379)
Q Consensus        87 S~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i  161 (379)
                      .++..    .+..+.|++++.||++.|. +|+++++|++...+-               .=++|++||++.|.+.|
T Consensus        73 ~~~m~----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~l---------------vGiit~~Dil~~l~g~i  129 (130)
T 3hf7_A           73 LRAAD----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI---------------QGLVTVEDILEEIVGDF  129 (130)
T ss_dssp             HHHSB----CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCE---------------EEEEEHHHHHHHHHC--
T ss_pred             HHhcc----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCE---------------EEEeeHHHHHHHHhCCC
Confidence            55552    2467999999999999999 689999998643221               11999999999998754

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.26  E-value=1.4e-06  Score=72.69  Aligned_cols=108  Identities=11%  Similarity=0.016  Sum_probs=86.8

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeee-cCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----ccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIW-SSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----CFC   88 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----VS~   88 (379)
                      +-+++....|+.+|++.+.+++...+||- +.+                    .++++|+|+.-|++-++..     |++
T Consensus        31 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~--------------------~~~lvGivt~~dl~~~~~~~~~~~v~~   90 (153)
T 3oco_A           31 SMSVVDVDETIADALLLYLEEQYSRFPVTADND--------------------KDKIIGYAYNYDIVRQARIDDKAKIST   90 (153)
T ss_dssp             GCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE--------------------EEEEEEEEEHHHHHHHHHHHTTSBGGG
T ss_pred             heEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC--------------------CCcEEEEEEHHHHHhHHhcCCCCcHHH
Confidence            45678889999999999999999999998 421                    2479999999999987653     777


Q ss_pred             cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297           89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI  161 (379)
Q Consensus        89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i  161 (379)
                      +. +   .+..+.|+++|.+|++.|. +++++++|++...+-               .=++|+.||+++|.+-+
T Consensus        91 ~m-~---~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~---------------vGivt~~dil~~l~~~~  145 (153)
T 3oco_A           91 IM-R---DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGT---------------SGIITDKDVYEELFGNL  145 (153)
T ss_dssp             TC-B---CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCE---------------EEEECHHHHHHHHHC--
T ss_pred             Hh-C---CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCE---------------EEEeeHHHHHHHHhccC
Confidence            77 3   3578999999999999999 699999998753221               11999999999998754

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.25  E-value=2.1e-06  Score=69.17  Aligned_cols=106  Identities=8%  Similarity=0.030  Sum_probs=84.5

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------cc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------CF   87 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------VS   87 (379)
                      +-.++....|+.+|++.+.+++...+||.+.                      ++++|+|+.-|++-.+.+       |+
T Consensus        14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~Givt~~dl~~~~~~~~~~~~~v~   71 (128)
T 3gby_A           14 DYPVFTLGGSTADAARRLAASGCACAPVLDG----------------------ERYLGMVHLSRLLEGRKGWPTVKEKLG   71 (128)
T ss_dssp             CSCCEETTSBHHHHHHHHHHHTCSEEEEEET----------------------TEEEEEEEHHHHHTTCSSSCCTTCBCC
T ss_pred             CcceECCCCCHHHHHHHHHHCCCcEEEEEEC----------------------CEEEEEEEHHHHHHHHhhCCcccCcHH
Confidence            3467778999999999999999999999982                      369999999999876653       55


Q ss_pred             ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhh
Q 041297           88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNF  160 (379)
Q Consensus        88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~  160 (379)
                      ++..+   .+..+.|+++|.||++.|. ++.++++|+++..+-               .=++|+.|++++|...
T Consensus        72 ~~m~~---~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~---------------~Giit~~dll~~l~~~  127 (128)
T 3gby_A           72 EELLE---TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRY---------------EGVVSRKRILGFLAER  127 (128)
T ss_dssp             GGGCB---CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBE---------------EEEEEHHHHHHHHHTT
T ss_pred             HHccC---CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCE---------------EEEEEHHHHHHHHHhh
Confidence            55542   3567999999999999998 689999998642221               1199999999998754

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.24  E-value=1.5e-06  Score=70.17  Aligned_cols=121  Identities=12%  Similarity=0.021  Sum_probs=89.4

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMA  248 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a  248 (379)
                      +.+++++  .+++ +..++.+++..+|++.|++.  +...+||||. |+++|-|+..+|....                 
T Consensus         4 s~~v~~~--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~-~~~~Givt~~dl~~~~-----------------   60 (128)
T 3gby_A            4 SVTFSYL--AETD-YPVFTLGGSTADAARRLAAS--GCACAPVLDG-ERYLGMVHLSRLLEGR-----------------   60 (128)
T ss_dssp             TCBGGGG--CBCC-SCCEETTSBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHTTC-----------------
T ss_pred             ceEHHHh--hcCC-cceECCCCCHHHHHHHHHHC--CCcEEEEEEC-CEEEEEEEHHHHHHHH-----------------
Confidence            3444443  5677 88999999999999999886  5589999999 9999999988876411                 


Q ss_pred             hhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecC
Q 041297          249 YMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYP  328 (379)
Q Consensus       249 ~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p  328 (379)
                        ..+                            . . ...+      - ++.                  -...++++++
T Consensus        61 --~~~----------------------------~-~-~~~~------v-~~~------------------m~~~~~~v~~   83 (128)
T 3gby_A           61 --KGW----------------------------P-T-VKEK------L-GEE------------------LLETVRSYRP   83 (128)
T ss_dssp             --SSS----------------------------C-C-TTCB------C-CGG------------------GCBCCCCBCT
T ss_pred             --hhC----------------------------C-c-ccCc------H-HHH------------------ccCCCcEECC
Confidence              000                            0 0 0000      0 000                  1234688999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehhhHHH
Q 041297          329 WSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQL  369 (379)
Q Consensus       329 ~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~~~~  369 (379)
                      ..+|.+++..+..|+.+++-|+|++|.++|+|+.+.--+.+
T Consensus        84 ~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (128)
T 3gby_A           84 GEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL  124 (128)
T ss_dssp             TSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             CCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999976544443

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.24  E-value=2.5e-06  Score=71.75  Aligned_cols=114  Identities=18%  Similarity=0.112  Sum_probs=86.7

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc----------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC----------   84 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la----------   84 (379)
                      +-+++....|+.+|++.+.+++...+||-+.                     .++++|+|+.-||+-++.          
T Consensus        15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---------------------~~~~~Givt~~dl~~~~~~~~~~~~~~~   73 (180)
T 3sl7_A           15 NLHVVKPSTSVDDALELLVEKKVTGLPVIDD---------------------NWTLVGVVSDYDLLALDSISGRSQNDTN   73 (180)
T ss_dssp             GCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---------------------TCBEEEEEEHHHHTCC------------
T ss_pred             CceeeCCCCcHHHHHHHHHHcCCCeEEEECC---------------------CCeEEEEEEHHHHHhhhhhccccCCccc
Confidence            4567888999999999999999999999873                     246999999999985431          


Q ss_pred             -------------------------cccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCccc
Q 041297           85 -------------------------PCFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKST  138 (379)
Q Consensus        85 -------------------------~VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~  138 (379)
                                               .|+++..+   .+..+.|+++|.+|++.|. .|+++++|++...+-         
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~---------  141 (180)
T 3sl7_A           74 LFPDVDSTWKTFNELQKLISKTYGKVVGDLMTP---SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKL---------  141 (180)
T ss_dssp             -------CCCSHHHHHHHHHTTTTCBHHHHSEE---SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBE---------
T ss_pred             ccccccchhhhhHHHHHHHhccccccHHHHhCC---CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeE---------
Confidence                                     14444432   2467999999999999999 599999998743221         


Q ss_pred             ccCCcceEEeeHHHHHHHHHhhhcccCCC
Q 041297          139 FHNDSEYCWLTQEDLIRYFLNFIGLLNPT  167 (379)
Q Consensus       139 ~~~~~~yC~LTQeDVvRFLl~~ig~l~p~  167 (379)
                            .-++|+.||++++.+....+..-
T Consensus       142 ------vGiit~~dil~~~~~~~~~~~~~  164 (180)
T 3sl7_A          142 ------IGILTRGNVVRAALQIKRNADSI  164 (180)
T ss_dssp             ------EEEEEHHHHHHHHHHHHHTC---
T ss_pred             ------EEEEEHHHHHHHHHHHhhhhhhh
Confidence                  12999999999999877655544

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.24  E-value=4.5e-07  Score=76.35  Aligned_cols=114  Identities=11%  Similarity=0.125  Sum_probs=87.0

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++.-+. .-+..+.|++++-||++.|. +|..+++|++....+              -.=++|..|+++++.+.    
T Consensus        40 v~diM~~~-~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~--------------lvGivt~~dl~~~~~~~----  100 (156)
T 3oi8_A           40 VRDAMITR-SRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDE--------------VLGILHAKDLLKYMFNP----  100 (156)
T ss_dssp             GGGTCEEG-GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTC--------------EEEEEEGGGGGGGSSCG----
T ss_pred             HhheeeeH-HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCc--------------EEEEEEHHHHHHHHHcC----
Confidence            66666421 23678999999999999999 589999997653211              01189999999876543    


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                         +..++.++=   ++ ++.|+.+++..+|++.|.+.  +...+||||.+|+++|-|+..||
T Consensus       101 ---~~~~v~~im---~~-~~~v~~~~~l~~a~~~m~~~--~~~~~~Vvd~~g~~~Givt~~Di  154 (156)
T 3oi8_A          101 ---EQFHLKSIL---RP-AVFVPEGKSLTALLKEFREQ--RNHMAIVIDEYGGTSGLVTFEDI  154 (156)
T ss_dssp             ---GGCCHHHHC---BC-CCEEETTSBHHHHHHHHHHT--TCCEEEEECTTSSEEEEEEHHHH
T ss_pred             ---CcccHHHHc---CC-CEEECCCCCHHHHHHHHHhc--CCeEEEEECCCCCEEEEEEHHHh
Confidence               344555542   45 78999999999999999886  45889999999999999998776

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.23  E-value=7.7e-07  Score=71.70  Aligned_cols=107  Identities=16%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH-HHHhhhcccCCCCCCcccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR-YFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR-FLl~~ig~l~p~p~~SI~s  174 (379)
                      +..+.|++++.||++.|. +|.+.++|++...+-               .=++|..|+++ ++....    .....++.+
T Consensus        18 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~----~~~~~~v~~   78 (133)
T 1y5h_A           18 VTCVGEHETLTAAAQYMREHDIGALPICGDDDRL---------------HGMLTDRDIVIKGLAAGL----DPNTATAGE   78 (133)
T ss_dssp             CCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBE---------------EEEEEHHHHHHTTGGGTC----CTTTSBHHH
T ss_pred             ceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeE---------------EEEEeHHHHHHHHHhcCC----CccccCHHH
Confidence            456899999999999998 589999988542111               12899999995 554321    122445555


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +  .+++ +..++.+++..+|++.|.+.  ....+||||. |+++|-||..||-
T Consensus        79 ~--m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~-g~~~Giit~~dil  126 (133)
T 1y5h_A           79 L--ARDS-IYYVDANASIQEMLNVMEEH--QVRRVPVISE-HRLVGIVTEADIA  126 (133)
T ss_dssp             H--HTTC-CCCEETTCCHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHH
T ss_pred             H--hcCC-CEEECCCCCHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHHH
Confidence            3  4466 89999999999999999886  4578999998 9999999988763

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.22  E-value=8.8e-07  Score=75.02  Aligned_cols=130  Identities=10%  Similarity=0.007  Sum_probs=81.0

Q ss_pred             EEEE--ecCCchhcHHHHHHhccccCceeEEE--cCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhh
Q 041297          183 ILAI--HYDDPAAFAIPLIAQSHIKQTSVAIV--DEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKD  258 (379)
Q Consensus       183 v~aV--~~~~~A~~Ai~lm~~a~~~~tAVAVV--d~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~  258 (379)
                      +..|  ..++++.+|+++|.+.  ..+.+|||  |.+|+++|-|+..+|...-       ..   +.    ..    .. 
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~--~~~~~pVv~~d~~~~lvGiit~~dl~~~~-------~~---~~----~~----~~-   83 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISET--TYSGFPVVVSRESQRLVGFVLRRDLIISI-------EN---AR----KK----QD-   83 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHC--CCSEEEEESCTTTCBEEEEEEHHHHHHHH-------HH---HH----TS----CS-
T ss_pred             eEEEecCCCccHHHHHHHHHhc--CCCceeEEEECCCCeEEEEEEHHHHHHHH-------Hh---hc----cc----CC-
Confidence            5667  9999999999999886  45899999  7889999999988875411       00   00    00    00 


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHH
Q 041297          259 LVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQ  338 (379)
Q Consensus       259 l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQ  338 (379)
                                  +      ++.+. . .-+   ... . .+.     ..........+.--...++++.+..+|.+++.+
T Consensus        84 ------------~------~~~~~-~-~~~---~~~-~-~~~-----~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~  133 (185)
T 2j9l_A           84 ------------G------VVSTS-I-IYF---TEH-S-PPL-----PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDI  133 (185)
T ss_dssp             ------------C------CCTTC-E-EEC---SSS-C-CCC-----CTTCCCCEECGGGEESSCCEEETTSBHHHHHHH
T ss_pred             ------------C------ccccc-e-eec---ccC-C-ccc-----ccccccCccHHHhhCcCCeEeCCCCCHHHHHHH
Confidence                        0      00000 0 000   000 0 000     000000000111112357899999999999999


Q ss_pred             HHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          339 ALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       339 AlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +..|+.+++.|+| +|.++|+|+..-
T Consensus       134 m~~~~~~~l~Vvd-~g~~vGiit~~d  158 (185)
T 2j9l_A          134 FRKLGLRQCLVTH-NGRLLGIITKKD  158 (185)
T ss_dssp             HHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             HHhCCCcEEEEEE-CCEEEEEEEHHH
Confidence            9999999999999 899999999754

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.20  E-value=6.3e-06  Score=73.45  Aligned_cols=151  Identities=11%  Similarity=0.099  Sum_probs=87.7

Q ss_pred             ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--cccccc
Q 041297           14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCSFA   91 (379)
Q Consensus        14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~li~   91 (379)
                      -+-+++....|+.+|++.+.+++...+||-+.                     .++++|+|+.-|+..++..  |+++..
T Consensus        21 ~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---------------------~~~l~Givt~~dl~~~~~~~~v~~im~   79 (213)
T 1vr9_A           21 QDFPMVEESATVRECLHRMRQYQTNECIVKDR---------------------EGHFRGVVNKEDLLDLDLDSSVFNKVS   79 (213)
T ss_dssp             SCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---------------------TSBEEEEEEGGGGTTSCTTSBSGGGCB
T ss_pred             CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---------------------CCEEEEEEEHHHHHhhcCCCcHHHHcc
Confidence            45577888999999999999999999999863                     2469999999999876653  777764


Q ss_pred             CCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCC
Q 041297           92 KDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQ  170 (379)
Q Consensus        92 ~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~  170 (379)
                      +   .+..+.|++++.||++.|. +|+++++|++...+-               .-++|+.|+++++....+.  .-+..
T Consensus        80 ~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l---------------vGiit~~Dil~~~~~~~~~--~~~~~  139 (213)
T 1vr9_A           80 L---PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRL---------------KGAVSLHDFLEALIEALAM--DVPGI  139 (213)
T ss_dssp             C---TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBE---------------EEEEEHHHHHHHHHHSCC--------
T ss_pred             C---CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEE---------------EEEEEHHHHHHHHHHHhcC--CCCcE
Confidence            3   3578999999999999999 699999998753211               1299999999988753321  00000


Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG  216 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG  216 (379)
                         .|-.      .......+..+|.++|.+.  ....++|++.+|
T Consensus       140 ---~l~~------~~~~~~~~l~~~~~~l~~~--~~~~l~V~~~~~  174 (213)
T 1vr9_A          140 ---RFSV------LLEDKPGELRKVVDALALS--NINILSVITTRS  174 (213)
T ss_dssp             ----------------------------------------------
T ss_pred             ---EEEE------EeCCCCccHHHHHHHHHHC--CCcEEEEEEEec
Confidence               1111      1112233467778888775  336677776655

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.18  E-value=2.8e-06  Score=79.54  Aligned_cols=118  Identities=15%  Similarity=0.087  Sum_probs=91.7

Q ss_pred             CCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcc
Q 041297          166 PTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLL  242 (379)
Q Consensus       166 p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLS  242 (379)
                      ..+..++.++  .+++ +.+|..++++.+|++.|++.-.   ..+.+||||.+|+++|-|+..+|...+.       ...
T Consensus       133 ~~~~~~v~~i--M~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~~-------~~~  202 (286)
T 2oux_A          133 HYEDETAGAI--MTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDD-------DTL  202 (286)
T ss_dssp             TSCTTBHHHH--CBSC-CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCT-------TSB
T ss_pred             cCChHHHHHh--CCCC-ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCCC-------CCc
Confidence            4566677654  5677 9999999999999999987522   3467999999999999999998865310       000


Q ss_pred             hhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcc
Q 041297          243 AGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSE  322 (379)
Q Consensus       243 Agdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~  322 (379)
                      +.++                                                                        -...
T Consensus       203 v~~i------------------------------------------------------------------------m~~~  210 (286)
T 2oux_A          203 IADI------------------------------------------------------------------------LNER  210 (286)
T ss_dssp             HHHH------------------------------------------------------------------------SBSC
T ss_pred             HHHH------------------------------------------------------------------------cCCC
Confidence            1111                                                                        0123


Q ss_pred             ceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          323 AIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       323 ~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      ++++++..++..|+..+..|+.+++-|||++|.++|+|++.--
T Consensus       211 ~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Di  253 (286)
T 2oux_A          211 VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDI  253 (286)
T ss_dssp             CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHH
T ss_pred             CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHH
Confidence            6889999999999999999999999999999999999997543

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.15  E-value=2.7e-06  Score=78.74  Aligned_cols=114  Identities=13%  Similarity=0.084  Sum_probs=87.6

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGD  245 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgd  245 (379)
                      ..++.+  +.+++ +.+|..++++.+|++.|++...   +...+||||.+|+++|-|+..+|...               
T Consensus       134 ~~~v~~--iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---------------  195 (278)
T 2yvy_A          134 EDEAGG--LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------  195 (278)
T ss_dssp             TTBGGG--TCBSC-CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS---------------
T ss_pred             cchHHh--hcCCC-ceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC---------------
Confidence            444543  45677 9999999999999999987532   45899999999999999987776421               


Q ss_pred             hhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcccee
Q 041297          246 LMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIV  325 (379)
Q Consensus       246 f~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vt  325 (379)
                           +..                                ...         .+.                  -...+++
T Consensus       196 -----~~~--------------------------------~~v---------~~i------------------m~~~~~~  211 (278)
T 2yvy_A          196 -----DPR--------------------------------TRV---------AEI------------------MNPKVVY  211 (278)
T ss_dssp             -----CTT--------------------------------CBS---------TTT------------------SBSSCCC
T ss_pred             -----CCC--------------------------------CcH---------HHH------------------hCCCCeE
Confidence                 000                                000         000                  1134789


Q ss_pred             ecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          326 CYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       326 C~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +++..++..++..+..|+.+++-|||++|.++|+|++.-
T Consensus       212 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~D  250 (278)
T 2yvy_A          212 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  250 (278)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             EeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHH
Confidence            999999999999999999999999999999999999753

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.07  E-value=5e-06  Score=72.10  Aligned_cols=107  Identities=12%  Similarity=-0.005  Sum_probs=85.7

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----cccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----CFCS   89 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----VS~l   89 (379)
                      +-+++....|+.+|+..+.+++...+||.+.+                    ..+++|+|+.-|++.++.+     |+ +
T Consensus        47 ~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------------------~~~lvGivt~~Dl~~~~~~~~~~~v~-~  105 (173)
T 3ocm_A           47 DVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS--------------------LDEVVGIGRAKDLVADLITEGRVRRN-R  105 (173)
T ss_dssp             GCCCEETTSCHHHHHHHHHHSSCSEEEEESSS--------------------TTSEEEEEEHHHHHHHHHHHSSCCGG-G
T ss_pred             HeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC--------------------CCCEEEEEEHHHHHHHHhcCCcchhH-h
Confidence            45678889999999999999999999998632                    2479999999999987642     65 3


Q ss_pred             ccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297           90 FAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI  161 (379)
Q Consensus        90 i~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i  161 (379)
                      ..    .+..|.|+++|.+|++.|. ++++.++|++...+-.               =++|++||++.|.+-+
T Consensus       106 ~~----~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lv---------------GiIT~~Dil~~l~~~i  159 (173)
T 3ocm_A          106 LR----DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIE---------------GLVTPIDVFEAIAGEF  159 (173)
T ss_dssp             SB----CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEE---------------EEECHHHHHHHHHCCC
T ss_pred             cC----CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEE---------------EEEeHHHHHHHHhCcC
Confidence            32    2468999999999999999 6899999986432211               1999999999998754

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.05  E-value=4.2e-06  Score=75.12  Aligned_cols=47  Identities=26%  Similarity=0.459  Sum_probs=39.8

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ++ +..+..++++.+|++.|.+.  +.+.+||||.+|+++|=|+..||-.
T Consensus       194 ~~-~~~~~~~~~~~~~~~~m~~~--~~~~~pVvd~~~~~~Giit~~dll~  240 (245)
T 3l2b_A          194 DN-LVAVSTDDLVEDVKVTMSET--RYSNYPVIDENNKVVGSIARFHLIS  240 (245)
T ss_dssp             TT-CCCEETTSBHHHHHHHHHHH--CCSEEEEECTTCBEEEEEECC----
T ss_pred             Cc-cEEECCCCcHHHHHHHHHhc--CCceEEEEcCCCeEEEEEEHHHhhc
Confidence            55 99999999999999999986  5599999999999999999999854

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.98  E-value=9e-06  Score=72.76  Aligned_cols=110  Identities=17%  Similarity=0.218  Sum_probs=84.6

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHhc----CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLLG----GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI  161 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~~----G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i  161 (379)
                      |+++.-.   -+..+.|++++-||++.|.+    +++.++|++...+-.               =++|..|+++.     
T Consensus        56 v~~iM~~---~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lv---------------Givt~~dll~~-----  112 (205)
T 3kxr_A           56 IGRYTDH---QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYL---------------GTVRRYDIFKH-----  112 (205)
T ss_dssp             GGGGCBC---CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEE---------------EEEEHHHHTTS-----
T ss_pred             HHhhccC---ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEE---------------EEEEHHHHHhC-----
Confidence            5555532   25689999999999999996    788888876532211               18888888642     


Q ss_pred             cccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          162 GLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       162 g~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                           -+..+|.++  .+++ +..|+.+++..+|++.|++.  +...+||||.+|+++|=|+..|+-
T Consensus       113 -----~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVVD~~g~lvGiIT~~Dil  169 (205)
T 3kxr_A          113 -----EPHEPLISL--LSED-SRALTANTTLLDAAEAIEHS--REIELPVIDDAGELIGRVTLRAAT  169 (205)
T ss_dssp             -----CTTSBGGGG--CCSS-CCCEETTSCHHHHHHHHHTS--SCSEEEEECTTSBEEEEEEHHHHH
T ss_pred             -----CCcchHHHH--hcCC-CeEECCCCCHHHHHHHHHhc--CCCEEEEEcCCCeEEEEEEHHHHH
Confidence                 245666664  5677 99999999999999999886  558999999999999999877763

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=97.94  E-value=1.1e-05  Score=72.43  Aligned_cols=56  Identities=14%  Similarity=0.230  Sum_probs=46.8

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ..+++++  .+++ +..|..+++..+|+++|++.  ....+||||.+|+++|=|+..||..
T Consensus         6 ~~~v~~i--m~~~-~~~v~~~~~~~~a~~~m~~~--~~~~lpVvd~~~~l~Giit~~di~~   61 (245)
T 3l2b_A            6 KLKVEDL--EMDK-IAPLAPEVSLKMAWNIMRDK--NLKSIPVADGNNHLLGMLSTSNITA   61 (245)
T ss_dssp             CCBGGGS--CCBC-CCCBCTTCBHHHHHHHHHHT--TCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred             cCcHHHh--cCCC-CcEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCEEEEEEEHHHHHH
Confidence            3455555  3466 88999999999999999885  5589999999999999999999864

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.83  E-value=3.6e-05  Score=71.20  Aligned_cols=110  Identities=19%  Similarity=0.218  Sum_probs=85.5

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHhc------CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLLG------GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  159 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~~------G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~  159 (379)
                      |+++.-.   -+..|.|++++-+|++.|.+      ++.++.|++...+-               .=++|..|+++.   
T Consensus       137 v~~iM~~---~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~l---------------vGivt~~dll~~---  195 (278)
T 2yvy_A          137 AGGLMTP---EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRL---------------KGVLSLRDLIVA---  195 (278)
T ss_dssp             GGGTCBS---CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBE---------------EEEEEHHHHHHS---
T ss_pred             HHhhcCC---CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCE---------------EEEEEHHHHhcC---
Confidence            5555532   36779999999999999996      68889887653211               118999999864   


Q ss_pred             hhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          160 FIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       160 ~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                             -+..+|.++  .+++ +..|+.+++..+|++.|++.  +...+||||.+|+++|-|+..|+-
T Consensus       196 -------~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~lvGivT~~Dil  252 (278)
T 2yvy_A          196 -------DPRTRVAEI--MNPK-VVYVRTDTDQEEVARLMADY--DFTVLPVVDEEGRLVGIVTVDDVL  252 (278)
T ss_dssp             -------CTTCBSTTT--SBSS-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHH
T ss_pred             -------CCCCcHHHH--hCCC-CeEEeCCCCHHHHHHHHHhc--CCCEEEEEeCCCeEEEEEEHHHHH
Confidence                   135566654  4577 99999999999999999886  458999999999999999887764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.81  E-value=1.9e-05  Score=73.89  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=82.0

Q ss_pred             eEEeCCCCchhHHHHHHhc------CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCC
Q 041297           97 VRHLKPSASLLEAVDLLLG------GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQ  170 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~~------G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~  170 (379)
                      +..|.|++++-+|++.|.+      |+.++.|++...+-               .=++|..|+++.          .+..
T Consensus       147 ~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~l---------------vGivt~~dll~~----------~~~~  201 (286)
T 2oux_A          147 FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHL---------------VGVISLRDLIVN----------DDDT  201 (286)
T ss_dssp             CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBE---------------EEEEEHHHHTTS----------CTTS
T ss_pred             ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeE---------------EEEEEHHHHHcC----------CCCC
Confidence            6789999999999999985      78889998653221               118999998874          2455


Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +|.++  .+++ +..|+.+++..+|++.|++.  +...+||||.+|+++|-|+..|+-
T Consensus       202 ~v~~i--m~~~-~~~v~~~~~l~ea~~~m~~~--~~~~lpVVd~~g~lvGiIT~~Dil  254 (286)
T 2oux_A          202 LIADI--LNER-VISVHVGDDQEDVAQTIRDY--DFLAVPVTDYDDHLLGIVTVDDII  254 (286)
T ss_dssp             BHHHH--SBSC-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHH
T ss_pred             cHHHH--cCCC-CeeecCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHH
Confidence            66653  4577 99999999999999999886  458999999999999999887764

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.69  E-value=2.3e-05  Score=81.74  Aligned_cols=163  Identities=14%  Similarity=0.136  Sum_probs=88.3

Q ss_pred             CCccccccccc--CCcEEEEecCCchhcHHHHHH-hccccCceeEEEcCCCcEEeeeCccccCCCcHHH-HHHHHhcchh
Q 041297          169 NQPINSHNIID--DAGILAIHYDDPAAFAIPLIA-QSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETV-AAAIATLLAG  244 (379)
Q Consensus       169 ~~SI~sLG~I~--~~~v~aV~~~~~A~~Ai~lm~-~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~-a~A~atLSAg  244 (379)
                      ..+++++  .+  ++ +..++.+++..++++.|+ +.  +.+.+||||++|+++|-|+-.||..--... ...-..++..
T Consensus       452 ~~~V~di--M~p~~~-v~~v~~~~t~~e~~~~~~~~~--~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~  526 (632)
T 3org_A          452 EMTAREI--MHPIEG-EPHLFPDSEPQHIKGILEKFP--NRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGH  526 (632)
T ss_dssp             TSBHHHH--CBCTTT-SCCBCSSSCHHHHHHHHHHST--TCCEECBBCTTCBBCCEESHHHHTTTTTTC-----------
T ss_pred             cCcHHHH--hhcCCC-ceEecCCCcHHHHHHHHHhcC--CcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccc
Confidence            4455554  34  56 889999999999999998 65  568999999999999999999997632110 0000001111


Q ss_pred             hhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccce
Q 041297          245 DLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAI  324 (379)
Q Consensus       245 df~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~v  324 (379)
                      +.....+    .+++.         +.++.   ..+ ... ...     ...+.|...  ..+.  .......-=+++++
T Consensus       527 ~~~~~~~----~~~l~---------~~~~~---~~~-~~~-~~~-----~~~~~e~~~--~~~~--~~~~v~~iMt~~pi  579 (632)
T 3org_A          527 RTLVLLD----AADLS---------ENIEG---LVD-ETP-SGE-----HSSKGKRTA--TVLE--PTSSLVVPCDVSPI  579 (632)
T ss_dssp             -----------------------------------------------------------------------CCSCCCCCC
T ss_pred             cceeccC----HHHHH---------hhccc---CCC-CCc-ccc-----hhhhcccce--Eeec--cccccchhhcCCCc
Confidence            1111111    01110         01110   000 000 000     000000000  0000  00001111235589


Q ss_pred             eecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          325 VCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       325 tC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      |+.+..++.+++.+|..|+.|++=|| ++|.++|+|+.+.
T Consensus       580 tV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~D  618 (632)
T 3org_A          580 VVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVERED  618 (632)
T ss_dssp             EEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGG
T ss_pred             eecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhh
Confidence            99999999999999999999999999 7899999998753

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.63  E-value=7.8e-05  Score=75.24  Aligned_cols=114  Identities=13%  Similarity=0.077  Sum_probs=87.2

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGD  245 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgd  245 (379)
                      ..++.+  +.+++ +.+++.++++-+|++.|++.-.   +.+.+||||.+|+++|-++..||...               
T Consensus       154 ~~~v~~--iM~~~-~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~---------------  215 (473)
T 2zy9_A          154 EDEAGG--LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------  215 (473)
T ss_dssp             TTBSTT--TCBSC-EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---------------
T ss_pred             CCCHHH--hCCCC-ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---------------
Confidence            444443  35577 9999999999999999987521   34789999999999999987766421               


Q ss_pred             hhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcccee
Q 041297          246 LMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIV  325 (379)
Q Consensus       246 f~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vt  325 (379)
                           +...|                                -         .+.                  -.+++++
T Consensus       216 -----~~~~~--------------------------------v---------~di------------------m~~~~~~  231 (473)
T 2zy9_A          216 -----DPRTR--------------------------------V---------AEI------------------MNPKVVY  231 (473)
T ss_dssp             -----CTTSB--------------------------------G---------GGT------------------SBSSCCC
T ss_pred             -----CCCCc--------------------------------H---------HHH------------------hCCCCeE
Confidence                 00000                                0         000                  1134789


Q ss_pred             ecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          326 CYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       326 C~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +++..++.+++..+..|+.+++-|||++|.++|+|.+.-
T Consensus       232 v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~D  270 (473)
T 2zy9_A          232 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  270 (473)
T ss_dssp             EESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             EeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHh
Confidence            999999999999999999999999999999999999754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.63  E-value=8.5e-06  Score=82.93  Aligned_cols=107  Identities=10%  Similarity=0.021  Sum_probs=0.0

Q ss_pred             cCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC---CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCC
Q 041297          179 DDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE---GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRP  255 (379)
Q Consensus       179 ~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d---GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~p  255 (379)
                      .++ +..|+.++++.+|+++|++.  ..+.+||||.+   |+++|-|+..||..-     .             -+...|
T Consensus       104 ~~~-~~~v~~~~tv~eal~~m~~~--~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-----~-------------~~~~~~  162 (503)
T 1me8_A          104 VVS-DSNVKPDQTFADVLAISQRT--THNTVAVTDDGTPHGVLLGLVTQRDYPID-----L-------------TQTETK  162 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccC-CeEECCCCcHHHHHHHHHHc--CceEEEEEECCCcCCeEEEEEEHHHHHhh-----h-------------ccccCc
Confidence            456 89999999999999999886  45899999998   899999999998741     0             000000


Q ss_pred             hhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHH
Q 041297          256 LKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAV  335 (379)
Q Consensus       256 pe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAV  335 (379)
                                                      -         .+.                +.+..+++++.+..||.++
T Consensus       163 --------------------------------V---------~di----------------M~~~~~~~tv~~~~sl~ea  185 (503)
T 1me8_A          163 --------------------------------V---------SDM----------------MTPFSKLVTAHQDTKLSEA  185 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------H---------HHH----------------hCCCCCCEEEcCCCcHHHH
Confidence                                            0         000                1122347999999999999


Q ss_pred             HHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          336 IMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       336 MaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +..+..|+++++-|||++|.++|+|+..
T Consensus       186 ~~~m~~~~i~~lpVVDe~g~lvGiIT~~  213 (503)
T 1me8_A          186 NKIIWEKKLNALPIIDDDQHLRYIVFRK  213 (503)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHcCCCEEEEEcCCCeEEEEEEec
Confidence            9999999999999999999999999875

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.56  E-value=8.4e-05  Score=75.46  Aligned_cols=114  Identities=14%  Similarity=0.118  Sum_probs=86.3

Q ss_pred             ccccccCCCCceEEeCCC-CchhHHHHHHh-cCccEEEEec-CCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297           86 CFCSFAKDSGIVRHLKPS-ASLLEAVDLLL-GGVQNLVILP-AGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG  162 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~-tsLLdAie~m~-~G~~rllVi~-s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig  162 (379)
                      |+++.-   .-+.+|+|+ +++.||+++|. +++.+++|++ +..+-               .=++|..||++++.... 
T Consensus       386 V~diM~---~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~l---------------vGiVt~~Dll~~l~~~~-  446 (527)
T 3pc3_A          386 IAELEL---PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSV---------------LGVVGQETLITQIVSMN-  446 (527)
T ss_dssp             GGGGCC---CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCE---------------EEEEEHHHHHHHHHHHC-
T ss_pred             HHHhCc---CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEE---------------EEEEEHHHHHHHHHhcc-
Confidence            445443   236679999 99999999999 6999999987 32211               11999999999998742 


Q ss_pred             ccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC----CcEEeeeCccccC
Q 041297          163 LLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE----GRLVGDISPFSLN  228 (379)
Q Consensus       163 ~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d----GkLIGeISa~~L~  228 (379)
                         ..+..+|.++  .+++ +..|+.+++..+|+++|.+.    .-+||||.+    |+++|=|+..||-
T Consensus       447 ---~~~~~~V~~i--m~~~-~~~v~~~~~l~~a~~~m~~~----~~~pVVd~~~~~~g~lvGIVT~~Dll  506 (527)
T 3pc3_A          447 ---RQQSDPAIKA--LNKR-VIRLNESEILGKLARVLEVD----PSVLILGKNPAGKVELKALATKLDVT  506 (527)
T ss_dssp             ---CCTTSBGGGG--EETT-CCEEETTSBHHHHHHHHTTC----SEEEEEEECSSSCEEEEEEEEHHHHH
T ss_pred             ---CcCCCcHHHH--hcCC-CeEECCCCcHHHHHHHHhhC----CEEEEEeCCcccCCeEEEEEEHHHHH
Confidence               1235566654  5677 99999999999999999653    347999985    8999999877763

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.51  E-value=0.00022  Score=66.61  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=43.0

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC--CcEEeeeCccccCC
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE--GRLVGDISPFSLNS  229 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d--GkLIGeISa~~L~~  229 (379)
                      -.++ +..|..++++.+|.++|.+.  +.+++||||.+  |+|||-|+-.||..
T Consensus        19 Mt~~-vvtv~~~~tv~~~~~lm~~~--~~~~~PVVd~~~~~~LvGiIt~~dl~~   69 (250)
T 2d4z_A           19 MVRD-VTSIASTSTYGDLLHVLRQT--KLKFFPFVDTPDTNTLLGSIDRTEVEG   69 (250)
T ss_dssp             SBSS-CCCEETTCBHHHHHHHHHHC--CCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             cCCC-CeEECCCCCHHHHHHHHHhc--CCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence            4577 99999999999999999886  56999999984  69999999999864

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.47  E-value=0.00011  Score=73.74  Aligned_cols=126  Identities=11%  Similarity=0.035  Sum_probs=92.5

Q ss_pred             eeHHHHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEc--CCCcEEeeeCcc
Q 041297          148 LTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVD--EEGRLVGDISPF  225 (379)
Q Consensus       148 LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd--~dGkLIGeISa~  225 (379)
                      +|.++.-+++..-.. +        .+  +..++ ++.++.+++..+|+++|++.  ..+.+||+|  .+|+++|-|+..
T Consensus        77 ~~~e~~~~~i~~v~~-~--------~~--im~~~-~~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~~~lvGivt~~  142 (491)
T 1zfj_A           77 MSITEQAEEVRKVKR-S--------EN--GVIID-PFFLTPEHKVSEAEELMQRY--RISGVPIVETLANRKLVGIITNR  142 (491)
T ss_dssp             SCHHHHHHHHHHHHH-H--------TT--TTSSS-CCCBCSSSBHHHHHHHHHHT--TCSEEEEESCTTTCBEEEEEEHH
T ss_pred             CCHHHHHHHHHHHhh-H--------Hh--cCcCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEEeCCCCEEEEEEEHH
Confidence            466666666544222 1        11  34456 88899999999999999886  568999999  789999999988


Q ss_pred             ccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccC
Q 041297          226 SLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSA  305 (379)
Q Consensus       226 ~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~  305 (379)
                      ||...                   .+..                                ...         .+.     
T Consensus       143 Dl~~~-------------------~~~~--------------------------------~~v---------~~i-----  157 (491)
T 1zfj_A          143 DMRFI-------------------SDYN--------------------------------API---------SEH-----  157 (491)
T ss_dssp             HHHHC-------------------SCSS--------------------------------SBT---------TTS-----
T ss_pred             HHhhh-------------------ccCC--------------------------------CcH---------HHH-----
Confidence            87431                   0100                                000         000     


Q ss_pred             CcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          306 RSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       306 ~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                                 + .+..++++.+..+|.+++..+..|+.+++.|||++|.++|+|+..-
T Consensus       158 -----------m-~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~D  204 (491)
T 1zfj_A          158 -----------M-TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKD  204 (491)
T ss_dssp             -----------C-CCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHH
T ss_pred             -----------c-CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHH
Confidence                       1 1125789999999999999999999999999999999999998643

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.46  E-value=1.7e-05  Score=79.80  Aligned_cols=127  Identities=22%  Similarity=0.165  Sum_probs=7.9

Q ss_pred             eeHHHHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          148 LTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       148 LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      +|.||..+|+..-..         +.+  +..++ +..|..+++..+|+++|++.  ..+.+||||.+|+++|-|+..||
T Consensus        82 ~~~e~~~~~v~~v~~---------~~~--iM~~~-~~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~lvGivt~~Dl  147 (494)
T 1vrd_A           82 LTPDEQARQVSIVKK---------TEN--GIIYD-PITVTPDMTVKEAIDLMAEY--KIGGLPVVDEEGRLVGLLTNRDV  147 (494)
T ss_dssp             SCHHHHHHHHHHHHT---------C-------------------------------------------------------
T ss_pred             CChHHHHHHHHhhhh---------Hhh--cCccC-CeEECCCCCHHHHHHHHHHc--CceEEEEEcCCCEEEEEEEHHHH
Confidence            566676666543221         122  24456 89999999999999999875  45899999999999999999998


Q ss_pred             CCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCc
Q 041297          228 NSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARS  307 (379)
Q Consensus       228 ~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~  307 (379)
                      ....                   +..                                ...         .+.       
T Consensus       148 ~~~~-------------------~~~--------------------------------~~v---------~~i-------  160 (494)
T 1vrd_A          148 RFEK-------------------NLS--------------------------------KKI---------KDL-------  160 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Hhhc-------------------CCC--------------------------------CcH---------HHH-------
Confidence            7410                   000                                000         000       


Q ss_pred             CCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          308 ARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       308 ~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                               +.++..++++.+..+|.+++..+..|+.+++-|||++|.++|+|+...
T Consensus       161 ---------m~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~D  208 (494)
T 1vrd_A          161 ---------MTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKD  208 (494)
T ss_dssp             ---------------------------------------------------------
T ss_pred             ---------hCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHH
Confidence                     011235789999999999999999999999999999999999998653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.43  E-value=0.0002  Score=73.33  Aligned_cols=107  Identities=13%  Similarity=0.106  Sum_probs=84.5

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC--CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCC
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE--EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRP  255 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~--dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~p  255 (379)
                      +.++ ++.+..+++..+|+++|++.  ..+.+||+|.  +|+|+|-|+..||....                   +...|
T Consensus       119 m~~d-~v~l~~~~tv~ea~~~m~~~--~~s~~pVvd~g~~~~lvGiVt~rDl~~~~-------------------~~~~~  176 (511)
T 3usb_A          119 VISD-PFFLTPEHQVYDAEHLMGKY--RISGVPVVNNLDERKLVGIITNRDMRFIQ-------------------DYSIK  176 (511)
T ss_dssp             SSSS-CCCBCTTSBHHHHHHHHHHH--CCSEEEEESCTTTCBEEEEEEHHHHTTCC-------------------CSSSB
T ss_pred             cccC-CEEECCCCCHHHHHHHHHHc--CCcEEEEEecCCCCEEEEEEEehHhhhhc-------------------cCCCc
Confidence            3456 78899999999999999986  5599999998  89999999988886410                   00000


Q ss_pred             hhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHH
Q 041297          256 LKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAV  335 (379)
Q Consensus       256 pe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAV  335 (379)
                      ..+                   .                                      + .+.++++..+..+|.++
T Consensus       177 V~~-------------------v--------------------------------------M-~~~~~vtv~~~~~l~ea  198 (511)
T 3usb_A          177 ISD-------------------V--------------------------------------M-TKEQLITAPVGTTLSEA  198 (511)
T ss_dssp             HHH-------------------H--------------------------------------C-CCCCCCCEETTCCHHHH
T ss_pred             HHH-------------------h--------------------------------------c-ccCCCEEECCCCCHHHH
Confidence            000                   0                                      0 11357899999999999


Q ss_pred             HHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          336 IMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       336 MaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +..+..|+.+++=|||++|.++|+|...-
T Consensus       199 l~~m~~~~i~~lpVVDe~g~l~GiIT~~D  227 (511)
T 3usb_A          199 EKILQKYKIEKLPLVDNNGVLQGLITIKD  227 (511)
T ss_dssp             HHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             HHHHHHcCCCEEEEEeCCCCEeeeccHHH
Confidence            99999999999999999999999998753

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.31  E-value=0.00046  Score=69.64  Aligned_cols=104  Identities=20%  Similarity=0.256  Sum_probs=83.9

Q ss_pred             ceEEeCCCCchhHHHHHHhc------CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCC
Q 041297           96 IVRHLKPSASLLEAVDLLLG------GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPN  169 (379)
Q Consensus        96 ll~~V~P~tsLLdAie~m~~------G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~  169 (379)
                      -+..+.|++++-||++.|.+      +..++.|++...+-               .=++|..|+++.          -+.
T Consensus       164 ~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~l---------------vGiVt~~Dll~~----------~~~  218 (473)
T 2zy9_A          164 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRL---------------KGVLSLRDLIVA----------DPR  218 (473)
T ss_dssp             CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBE---------------EEEEEHHHHHHS----------CTT
T ss_pred             CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcE---------------EEEEEHHHHhcC----------CCC
Confidence            37889999999999999996      46788887653211               118999999863          145


Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      .+|.++  .+++ +..|+.+++..+|++.|++.  +...+||||.+|+++|-|+..|+-.
T Consensus       219 ~~v~di--m~~~-~~~v~~~~~l~ea~~~m~~~--~~~~lpVVDe~g~lvGiIT~~Dil~  273 (473)
T 2zy9_A          219 TRVAEI--MNPK-VVYVRTDTDQEEVARLMADY--DFTVLPVVDEEGRLVGIVTVDDVLD  273 (473)
T ss_dssp             SBGGGT--SBSS-CCCEESSSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred             CcHHHH--hCCC-CeEEeCCCcHHHHHHHHHhc--CCcEEEEEcCCCEEEEEEehHhhHH
Confidence            667664  4577 99999999999999999986  5589999999999999999988854

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.27  E-value=0.00029  Score=73.39  Aligned_cols=122  Identities=13%  Similarity=0.067  Sum_probs=80.4

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh--cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL--GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-  162 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~--~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-  162 (379)
                      |.++..+. .-+..++|++++-|+++.|.  ++.+++.|+++..+-.+               .+|+.|+++.+..... 
T Consensus       455 V~diM~p~-~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvG---------------iVt~~DL~~~l~~~~~~  518 (632)
T 3org_A          455 AREIMHPI-EGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLG---------------AISRKEIVDRLQHVLED  518 (632)
T ss_dssp             HHHHCBCT-TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCC---------------EESHHHHTTTTTTC---
T ss_pred             HHHHhhcC-CCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEE---------------EEEHHHHHHHHHHHhhh
Confidence            66766421 23567899999999999999  47888888775221111               4555555544432211 


Q ss_pred             ------------------------ccCC-C-----------------CCCcccccccccCCcEEEEecCCchhcHHHHHH
Q 041297          163 ------------------------LLNP-T-----------------PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIA  200 (379)
Q Consensus       163 ------------------------~l~p-~-----------------p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~  200 (379)
                                              .+.+ .                 +..++.+  +.+++ +..|+.++++.+|+++|+
T Consensus       519 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~--iMt~~-pitV~~~~~l~ea~~~M~  595 (632)
T 3org_A          519 VPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV--PCDVS-PIVVTSYSLVRQLHFLFV  595 (632)
T ss_dssp             ----------------------------------------------------CC--SCCCC-CCEEETTCBHHHHHHHHH
T ss_pred             cccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch--hhcCC-CceecCCCcHHHHHHHHH
Confidence                                    0000 0                 0001222  35566 889999999999999999


Q ss_pred             hccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          201 QSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       201 ~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      +.  +.+.+||| ++|+++|=|+-.||-.
T Consensus       596 ~~--~i~~lpVv-e~G~lvGIVT~~Dll~  621 (632)
T 3org_A          596 ML--MPSMIYVT-ERGKLVGIVEREDVAY  621 (632)
T ss_dssp             HT--CCSEEEEE-ETTEEEEEEEGGGTEE
T ss_pred             hc--CCCEEEEE-ECCEEEEEEehhhHHH
Confidence            86  55889999 8899999999999944

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.23  E-value=0.00052  Score=68.75  Aligned_cols=102  Identities=23%  Similarity=0.292  Sum_probs=80.7

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEec--CCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILP--AGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN  173 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~--s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~  173 (379)
                      +..++|++++-|+++.|. .+..++.|++  +.-+-               .=++|..|++++.         -+..+|.
T Consensus       100 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~l---------------vGivt~~Dl~~~~---------~~~~~v~  155 (491)
T 1zfj_A          100 PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKL---------------VGIITNRDMRFIS---------DYNAPIS  155 (491)
T ss_dssp             CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBE---------------EEEEEHHHHHHCS---------CSSSBTT
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEE---------------EEEEEHHHHhhhc---------cCCCcHH
Confidence            566899999999999999 6888998876  32111               1289999998641         1455666


Q ss_pred             ccccccC-CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          174 SHNIIDD-AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       174 sLG~I~~-~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      ++  .++ + +..|+.+++..++++.|.+.  +...+||||.+|+++|-|+..||
T Consensus       156 ~i--m~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVVd~~g~lvGivt~~Di  205 (491)
T 1zfj_A          156 EH--MTSEH-LVTAAVGTDLETAERILHEH--RIEKLPLVDNSGRLSGLITIKDI  205 (491)
T ss_dssp             TS--CCCSC-CCCEETTCCHHHHHHHHHHT--TCSEEEEECTTSBEEEEEEHHHH
T ss_pred             HH--cCCCC-CEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEEHHHH
Confidence            64  445 6 88999999999999999886  55899999999999999998776

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.19  E-value=0.00089  Score=62.50  Aligned_cols=49  Identities=14%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ++++. .+.|..+++...+..+|++.  ...-++|++ +|||||=|+-.||.+
T Consensus       194 ~md~s-P~tv~~~tsL~~v~~LF~~l--glr~l~V~~-~GrLVGIVTrkDl~k  242 (250)
T 2d4z_A          194 RIDQS-PFQLVEGTSLQKTHTLFSLL--GLDRAYVTS-MGKLVGVVALAEIQA  242 (250)
T ss_dssp             CEECC-SCCBCTTCBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHH
T ss_pred             cccCC-CeEECCCCcHHHHHHHHHHh--CCeEEEEEE-CCEEEEEEEHHHHHH
Confidence            57888 99999999999999999986  558999996 799999999888865

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.19  E-value=7.8e-05  Score=76.07  Aligned_cols=105  Identities=12%  Similarity=0.029  Sum_probs=76.5

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL  259 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l  259 (379)
                      ++ ++.++.++++.+|+++|++.  ..+.+||||.+|+|+|-|+..||..-.                   +.       
T Consensus        97 ~d-~v~v~~~~tv~ea~~~m~~~--~~s~~PVvd~~~~lvGiVt~rDL~~~~-------------------~~-------  147 (496)
T 4fxs_A           97 TH-PVTVRPEQTIADVMELTHYH--GFAGFPVVTENNELVGIITGRDVRFVT-------------------DL-------  147 (496)
T ss_dssp             BC-CCCBCSSSBHHHHHHHHTSS--CCCEEEEECSSSBEEEEEEHHHHTTCC-------------------CT-------
T ss_pred             cC-ceEECCCCCHHHHHHHHHHc--CCcEEEEEccCCEEEEEEEHHHHhhcc-------------------cC-------
Confidence            56 78899999999999999885  558999999999999999998886200                   00       


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297          260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA  339 (379)
Q Consensus       260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA  339 (379)
                                                . .+      - .|.                +..+.++++..+..+|.+++..+
T Consensus       148 --------------------------~-~~------v-~di----------------M~p~~~~vtv~~~~~l~ea~~~m  177 (496)
T 4fxs_A          148 --------------------------T-KS------V-AAV----------------MTPKERLATVKEGATGAEVQEKM  177 (496)
T ss_dssp             --------------------------T-SB------G-GGT----------------SEEGGGCCEEECC----CGGGTC
T ss_pred             --------------------------C-Cc------H-HHH----------------hcCCCCCEEECCCCCHHHHHHHH
Confidence                                      0 00      0 000                11134578999999999999999


Q ss_pred             HHcCCcEEEEeeCCCCcccceEee
Q 041297          340 LARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       340 laHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..||.+++=|||++|.++|+|.+.
T Consensus       178 ~~~~i~~lpVVDe~G~l~GiIT~~  201 (496)
T 4fxs_A          178 HKARVEKILVVNDEFQLKGMITAK  201 (496)
T ss_dssp             C---CCCEEEECTTSBCCEEECCC
T ss_pred             HHcCCCEEEEEcCCCCEEEeehHh
Confidence            999999999999999999999875

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.12  E-value=6.9e-05  Score=76.26  Aligned_cols=104  Identities=10%  Similarity=0.075  Sum_probs=0.0

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL  259 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l  259 (379)
                      ++ +..++.+++..+|+++|++.  ..+.+|||| +|+|+|-|+..||+...                   +..      
T Consensus        96 ~~-~v~v~~~~tv~ea~~~m~~~--~~s~~pVvd-~g~lvGIVt~rDl~~~~-------------------~~~------  146 (490)
T 4avf_A           96 RD-PVTVTPSTKIIELLQMAREY--GFSGFPVVE-QGELVGIVTGRDLRVKP-------------------NAG------  146 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cC-ceEeCCCCcHHHHHHHHHHh--CCCEEEEEE-CCEEEEEEEhHHhhhcc-------------------ccC------
Confidence            55 78999999999999999885  458999999 89999999999996210                   000      


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297          260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA  339 (379)
Q Consensus       260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA  339 (379)
                                                  .+      - .|.                +..+..+++..+..+|.+++..+
T Consensus       147 ----------------------------~~------V-~~v----------------Mtp~~~~vtv~~~~~l~ea~~~m  175 (490)
T 4avf_A          147 ----------------------------DT------V-AAI----------------MTPKDKLVTAREGTPLEEMKAKL  175 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------Cc------H-HHH----------------hccCCCCEEECCCCcHHHHHHHH
Confidence                                        00      0 000                01123578999999999999999


Q ss_pred             HHcCCcEEEEeeCCCCcccceEee
Q 041297          340 LARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       340 laHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..|+.+++=|||++|.++|+|.+.
T Consensus       176 ~~~~i~~lpVVDe~g~lvGiIT~~  199 (490)
T 4avf_A          176 YENRIEKMLVVDENFYLRGLVTFR  199 (490)
T ss_dssp             ------------------------
T ss_pred             HHcCCCEEEEEcCCCcEEEEEehH
Confidence            999999999999999999999875

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.09  E-value=0.00012  Score=74.25  Aligned_cols=127  Identities=10%  Similarity=0.014  Sum_probs=69.1

Q ss_pred             eeHHHHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCc
Q 041297          148 LTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISP  224 (379)
Q Consensus       148 LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa  224 (379)
                      .|.|++.+|+..-         +++.+  +..++ +..+..+++..+|+++|.+.  ..+.+||||.   +|+++|-|+.
T Consensus        95 ~t~e~~~~~v~~v---------~~~~~--im~~~-~~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~~~~lvGiVt~  160 (514)
T 1jcn_A           95 CTPEFQANEVRKV---------KNFEQ--GFITD-PVVLSPSHTVGDVLEAKMRH--GFSGIPITETGTMGSKLVGIVTS  160 (514)
T ss_dssp             SCHHHHHHHHHHH---------HTCCT--TSCSS-CCCCCC-------------------CEESCC--------CCEECT
T ss_pred             CCHHHHHHHHHhh---------hhhhh--ccccC-CEEECCCCCHHHHHHHHHhc--CCCEEEEEeCCCcCCEEEEEEEH
Confidence            3889998888532         12332  23355 77899999999999999875  4589999998   5899999999


Q ss_pred             cccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCcccccccc
Q 041297          225 FSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGS  304 (379)
Q Consensus       225 ~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~  304 (379)
                      .||.....                 .+..                                .+.         ++.    
T Consensus       161 ~Dl~~~~~-----------------~~~~--------------------------------~~v---------~~v----  178 (514)
T 1jcn_A          161 RDIDFLAE-----------------KDHT--------------------------------TLL---------SEV----  178 (514)
T ss_dssp             TTTC----------------------------------------------------------------------------
T ss_pred             HHHHhhhh-----------------ccCC--------------------------------CCH---------HHH----
Confidence            99875210                 0000                                000         000    


Q ss_pred             CCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297          305 ARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRI  362 (379)
Q Consensus       305 ~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~  362 (379)
                                  +.....+++.++..+|.+++..+..|+.+++-|||++|.++|+|+.
T Consensus       179 ------------m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~  224 (514)
T 1jcn_A          179 ------------MTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIAR  224 (514)
T ss_dssp             --------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----C
T ss_pred             ------------hCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEH
Confidence                        0112357899999999999999999999999999999999999984

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.09  E-value=0.00076  Score=68.47  Aligned_cols=111  Identities=17%  Similarity=0.109  Sum_probs=82.7

Q ss_pred             cccccCcc-ccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------
Q 041297           15 DEIALGQF-IHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------   85 (379)
Q Consensus        15 ~~~~~~~~-~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------   85 (379)
                      +-+++... .|+.+|++.+.+++...+||-+.+                    ..+++|+|+.-||+-++..        
T Consensus       393 ~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~--------------------~g~lvGiVt~~Dll~~l~~~~~~~~~~  452 (527)
T 3pc3_A          393 APPVILKSDATVGEAIALMKKHRVDQLPVVDQD--------------------DGSVLGVVGQETLITQIVSMNRQQSDP  452 (527)
T ss_dssp             CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT--------------------TCCEEEEEEHHHHHHHHHHHCCCTTSB
T ss_pred             CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC--------------------CCEEEEEEEHHHHHHHHHhccCcCCCc
Confidence            45667778 999999999999999999998721                    2469999999999866542        


Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCCcccCCCCCCcccccCCcce-EEeeHHHHHHHHHhhh
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEY-CWLTQEDLIRYFLNFI  161 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~~k~~~~~s~~~~~~~~~~y-C~LTQeDVvRFLl~~i  161 (379)
                      |+++..+   .+..|+|+++|.|++++|.+.- -++|+++.-+.            ..++ =++|++||++||.+..
T Consensus       453 V~~im~~---~~~~v~~~~~l~~a~~~m~~~~-~~pVVd~~~~~------------~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          453 AIKALNK---RVIRLNESEILGKLARVLEVDP-SVLILGKNPAG------------KVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             GGGGEET---TCCEEETTSBHHHHHHHHTTCS-EEEEEEECSSS------------CEEEEEEEEHHHHHHHHHTCC
T ss_pred             HHHHhcC---CCeEECCCCcHHHHHHHHhhCC-EEEEEeCCccc------------CCeEEEEEEHHHHHHHHHhcc
Confidence            6666643   3678999999999999997432 24556542100            0112 2999999999998865

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=96.88  E-value=0.0087  Score=61.26  Aligned_cols=110  Identities=14%  Similarity=0.023  Sum_probs=86.5

Q ss_pred             ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc---cccccc
Q 041297           14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC---PCFCSF   90 (379)
Q Consensus        14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la---~VS~li   90 (379)
                      -|-+++....|+++|++.+.+++...+||.+.. .                  ..+++|+|+.-|+.-.--   .|+++.
T Consensus       121 ~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~------------------~~~lvGiVt~rDl~~~~~~~~~V~~vM  181 (511)
T 3usb_A          121 SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-D------------------ERKLVGIITNRDMRFIQDYSIKISDVM  181 (511)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-T------------------TCBEEEEEEHHHHTTCCCSSSBHHHHC
T ss_pred             cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-C------------------CCEEEEEEEehHhhhhccCCCcHHHhc
Confidence            366789999999999999999999999998731 0                  247999999999863111   177776


Q ss_pred             cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297           91 AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  159 (379)
Q Consensus        91 ~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~  159 (379)
                      -+  ..+..+.+++++.|+++.|. .+++.++|++...+-               .=.+|.+||++.+..
T Consensus       182 ~~--~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l---------------~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          182 TK--EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVL---------------QGLITIKDIEKVIEF  234 (511)
T ss_dssp             CC--CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBE---------------EEEEEHHHHHHHHHC
T ss_pred             cc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCE---------------eeeccHHHHHHhhhc
Confidence            53  24678999999999999999 699999998753321               118999999999865

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=96.86  E-value=0.00016  Score=73.50  Aligned_cols=108  Identities=13%  Similarity=0.133  Sum_probs=0.0

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN  173 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~  173 (379)
                      +..|+|++++-||+++|. +|..++.|+++.  ..+        ..      =++|..|+.+.        ......+|.
T Consensus       107 ~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~--------lv------GiVt~~Dl~~~--------~~~~~~~V~  164 (503)
T 1me8_A          107 DSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGV--------LL------GLVTQRDYPID--------LTQTETKVS  164 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCe--------EE------EEEEHHHHHhh--------hccccCcHH
Confidence            567999999999999999 688888887653  111        00      17888888753        112355666


Q ss_pred             ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ++=--+++ +..|+.+++..+|+++|++.  +...+||||.+|+++|=|+..||..
T Consensus       165 diM~~~~~-~~tv~~~~sl~ea~~~m~~~--~i~~lpVVDe~g~lvGiIT~~Dil~  217 (503)
T 1me8_A          165 DMMTPFSK-LVTAHQDTKLSEANKIIWEK--KLNALPIIDDDQHLRYIVFRKDYDR  217 (503)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHhCCCCC-CEEEcCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEecHHHH
Confidence            65322234 88999999999999999886  5589999999999999999988853

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.76  E-value=0.0011  Score=67.60  Aligned_cols=105  Identities=11%  Similarity=0.221  Sum_probs=72.7

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++-|++++|. .+..++.|+++.-+-               .=.+|..|+.         |..-...+|.++
T Consensus        99 ~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~l---------------vGiVt~rDL~---------~~~~~~~~v~di  154 (496)
T 4fxs_A           99 PVTVRPEQTIADVMELTHYHGFAGFPVVTENNEL---------------VGIITGRDVR---------FVTDLTKSVAAV  154 (496)
T ss_dssp             CCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBE---------------EEEEEHHHHT---------TCCCTTSBGGGT
T ss_pred             ceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEE---------------EEEEEHHHHh---------hcccCCCcHHHH
Confidence            457899999999999999 588888887753211               1189999985         223345566664


Q ss_pred             cccc-CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          176 NIID-DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       176 G~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                        .+ ++++..++.+++..+|+++|++.  +...+||||.+|+|+|-|+..|+-.
T Consensus       155 --M~p~~~~vtv~~~~~l~ea~~~m~~~--~i~~lpVVDe~G~l~GiIT~~DIl~  205 (496)
T 4fxs_A          155 --MTPKERLATVKEGATGAEVQEKMHKA--RVEKILVVNDEFQLKGMITAKDFHK  205 (496)
T ss_dssp             --SEEGGGCCEEECC----CGGGTCC-----CCCEEEECTTSBCCEEECCC----
T ss_pred             --hcCCCCCEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCCEEEeehHhHHHH
Confidence              34 22388999999999999999886  5588999999999999999998843

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.60  E-value=0.00034  Score=70.36  Aligned_cols=102  Identities=19%  Similarity=0.229  Sum_probs=0.6

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..|.|++++-||++.|. ++...+.|++...+-.+               ++|..|+.+. .        -...++.++
T Consensus       105 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvG---------------ivt~~Dl~~~-~--------~~~~~v~~i  160 (494)
T 1vrd_A          105 PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVG---------------LLTNRDVRFE-K--------NLSKKIKDL  160 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEE---------------EEEHHHHHhh-c--------CCCCcHHHH
Confidence            677999999999999999 57778888764322111               7888888751 1        124455543


Q ss_pred             ccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          176 NIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       176 G~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                        .++  + +..|+.+++..+|++.|.+.  +...+||||.+|+++|-|+..||
T Consensus       161 --m~~~~~-~~~v~~~~~l~ea~~~m~~~--~~~~lpVVd~~g~lvGiIt~~Dl  209 (494)
T 1vrd_A          161 --MTPREK-LIVAPPDISLEKAKEILHQH--RIEKLPLVSKDNKLVGLITIKDI  209 (494)
T ss_dssp             -----------------------------------------------------C
T ss_pred             --hCCCCC-CeEECCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHH
Confidence              344  6 89999999999999999886  45889999999999999997766

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.37  E-value=0.00055  Score=69.39  Aligned_cols=105  Identities=18%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCC---cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG---IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPI  172 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~---~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI  172 (379)
                      ...+.|++++-||+++|. .+.+.++|+++.   .+-.+               ++|..|+.+.. .      .....++
T Consensus       118 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvG---------------iVt~~Dl~~~~-~------~~~~~~v  175 (514)
T 1jcn_A          118 PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVG---------------IVTSRDIDFLA-E------KDHTTLL  175 (514)
T ss_dssp             CCCCCC-----------------CEESCC--------CC---------------EECTTTTC------------------
T ss_pred             CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEE---------------EEEHHHHHhhh-h------ccCCCCH
Confidence            457899999999999999 588888887652   11111               78888876421 1      0123445


Q ss_pred             cccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          173 NSHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       173 ~sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      .++  .++  + +..|+.+++..+|+++|.+.  ....+||||.+|+++|-|+-.||-
T Consensus       176 ~~v--m~~~~~-~~tv~~~~~l~ea~~~m~~~--~~~~lpVVd~~g~lvGiIt~~Dll  228 (514)
T 1jcn_A          176 SEV--MTPRIE-LVVAPAGVTLKEANEILQRS--KKGKLPIVNDCDELVAIIARTDLK  228 (514)
T ss_dssp             -------CCBC-CCCEETTCCSTTTTTHHHHH--TCSCCCEESSSSCCC----CCCCS
T ss_pred             HHH--hCCCCC-CeEECCCCCHHHHHHHHHHc--CCCcccEECCCCeEEEEEEHHHHH
Confidence            543  344  6 89999999999999999886  447899999999999999977763

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=96.26  E-value=0.00087  Score=50.99  Aligned_cols=43  Identities=9%  Similarity=0.264  Sum_probs=38.5

Q ss_pred             EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +..|.+++++.+|+++|++.  +..++||+| +|+++|=|+-.||.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~--~i~~~~V~d-~~~lvGIvT~~Di~   44 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRN--KAGSAVVME-GDEILGVVTERDIL   44 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHT--TCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred             CEEECCCCcHHHHHHHHHHc--CCCEEEEEE-CCEEEEEEEHHHHH
Confidence            67899999999999999886  568999998 68999999999984

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=95.96  E-value=0.0012  Score=66.66  Aligned_cols=102  Identities=18%  Similarity=0.287  Sum_probs=0.0

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++-|+++.|. .|..++.|++.  .+.        .      =++|..|+++   +        +..++.++
T Consensus       103 ~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~l--------v------Givt~~Dl~~---~--------~~~~v~~i  155 (486)
T 2cu0_A          103 VITIAPDETVDFALFLMEKHGIDGLPVVED--EKV--------V------GIITKKDIAA---R--------EGKLVKEL  155 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEE--------E------EEEEHHHhcc---C--------CCCCHHHH
Confidence            567889999999999999 57778887765  220        0      1788888764   1        34556554


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC  230 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C  230 (379)
                        .+++ +..|+.+++..+|++.|++.  +...+||||.+|+++|-|+..||...
T Consensus       156 --m~~~-~~~v~~~~~l~eal~~m~~~--~~~~lpVVde~g~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          156 --MTKE-VITVPESIEVEEALKIMIEN--RIDRLPVVDERGKLVGLITMSDLVAR  205 (486)
T ss_dssp             -------------------------------------------------------
T ss_pred             --ccCC-CeEECCcCcHHHHHHHHHHc--CCCEEEEEecCCeEEEEEEHHHHHHh
Confidence              4556 88999999999999999875  45789999999999999999998654

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=95.91  E-value=0.0087  Score=45.37  Aligned_cols=40  Identities=15%  Similarity=0.052  Sum_probs=36.8

Q ss_pred             cceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297          322 EAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRI  362 (379)
Q Consensus       322 ~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~  362 (379)
                      +++++.|..|+.++...|..|+++++=|+| +|.++|+|+-
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~   40 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTE   40 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEH
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEH
Confidence            378999999999999999999999999998 5789999984

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=95.87  E-value=0.0014  Score=66.77  Aligned_cols=103  Identities=15%  Similarity=0.192  Sum_probs=0.0

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++-||+++|. +|..++.|+++ -+-.+               ++|..|+ +|..        -...+|.++
T Consensus        98 ~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~-g~lvG---------------IVt~rDl-~~~~--------~~~~~V~~v  152 (490)
T 4avf_A           98 PVTVTPSTKIIELLQMAREYGFSGFPVVEQ-GELVG---------------IVTGRDL-RVKP--------NAGDTVAAI  152 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEeCCCCcHHHHHHHHHHhCCCEEEEEEC-CEEEE---------------EEEhHHh-hhcc--------ccCCcHHHH
Confidence            468899999999999999 58888888772 11111               7788887 3322        123445543


Q ss_pred             cccc-C-CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          176 NIID-D-AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       176 G~I~-~-~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                        .+ + + +..|+.+++..+|+++|++.  +...+||||.+|+++|-|+..|+..
T Consensus       153 --Mtp~~~-~vtv~~~~~l~ea~~~m~~~--~i~~lpVVDe~g~lvGiIT~~Dil~  203 (490)
T 4avf_A          153 --MTPKDK-LVTAREGTPLEEMKAKLYEN--RIEKMLVVDENFYLRGLVTFRDIEK  203 (490)
T ss_dssp             --------------------------------------------------------
T ss_pred             --hccCCC-CEEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEehHHhhh
Confidence              33 2 5 89999999999999999986  5588999999999999999998854

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=95.77  E-value=0.0016  Score=65.71  Aligned_cols=101  Identities=15%  Similarity=0.203  Sum_probs=0.0

Q ss_pred             CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297          180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL  259 (379)
Q Consensus       180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l  259 (379)
                      .+ ++.++.+++..+++++|++.  ..+.+||+|. |+++|-|+..||.. +.       ...+.               
T Consensus       101 ~~-~~~v~~~~tv~ea~~~~~~~--~~~~~pVvd~-~~lvGivt~~Dl~~-~~-------~~~v~---------------  153 (486)
T 2cu0_A          101 ED-VITIAPDETVDFALFLMEKH--GIDGLPVVED-EKVVGIITKKDIAA-RE-------GKLVK---------------  153 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cC-ceEECCCCCHHHHHHHHHHc--CCcEEEEEEC-CEEEEEEEHHHhcc-CC-------CCCHH---------------
Confidence            56 89999999999999999876  4589999998 99999999998863 10       00000               


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297          260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA  339 (379)
Q Consensus       260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA  339 (379)
                                                             +.                  -+.++++..+..+|.+++..+
T Consensus       154 ---------------------------------------~i------------------m~~~~~~v~~~~~l~eal~~m  176 (486)
T 2cu0_A          154 ---------------------------------------EL------------------MTKEVITVPESIEVEEALKIM  176 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------HH------------------ccCCCeEECCcCcHHHHHHHH
Confidence                                                   00                  012467889999999999999


Q ss_pred             HHcCCcEEEEeeCCCCcccceEeeh
Q 041297          340 LARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       340 laHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      ..|+.+++-|||++|.++|+|+.+-
T Consensus       177 ~~~~~~~lpVVde~g~lvGiiT~~D  201 (486)
T 2cu0_A          177 IENRIDRLPVVDERGKLVGLITMSD  201 (486)
T ss_dssp             -------------------------
T ss_pred             HHcCCCEEEEEecCCeEEEEEEHHH
Confidence            9999999999999999999998753

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=94.84  E-value=0.0052  Score=64.24  Aligned_cols=107  Identities=13%  Similarity=0.105  Sum_probs=0.4

Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhc
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMD  251 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd  251 (379)
                      -|+|...  +.+.++.++.+|+++|++-  ..+++||||.   +|||+|=++-.|++.-|..       ..+.|+|    
T Consensus       142 ~g~i~dP--vtl~P~~Tv~da~~l~~~~--~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~-------~~V~evM----  206 (556)
T 4af0_A          142 NGFITDP--LCLGPDATVGDVLEIKAKF--GFCGVPITETGEPDSKLLGIVTGRDVQFQDAE-------TPIKSVM----  206 (556)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCccCCC--eEcCCCCCHHHHHHHHHHh--CCCccccccccCcCCEEEEEEecccccccccc-------eEhhhhc----
Confidence            4666544  7899999999999999886  4599999997   7899999999998763211       0011111    


Q ss_pred             cCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCc
Q 041297          252 CGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSS  331 (379)
Q Consensus       252 ~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SS  331 (379)
                                                                                          +.+++|-....+
T Consensus       207 --------------------------------------------------------------------T~~lvt~~~~~~  218 (556)
T 4af0_A          207 --------------------------------------------------------------------TTEVVTGSSPIT  218 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------ccceEEecCCCC
Confidence                                                                                124677777788


Q ss_pred             HHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          332 LMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       332 LvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      |.++..-+-.||...+=|||++|.|+|+|.++-
T Consensus       219 leeA~~iL~~~kieklpVVd~~g~LvGlIT~kD  251 (556)
T 4af0_A          219 LEKANSLLRETKKGKLPIVDSNGHLVSLVARSD  251 (556)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHHHccccceeEEccCCcEEEEEEech
Confidence            889999999999999999999999999998753

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=87.70  E-value=0.1  Score=54.61  Aligned_cols=90  Identities=19%  Similarity=0.124  Sum_probs=0.0

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc---ccccccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC---PCFCSFA   91 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la---~VS~li~   91 (379)
                      |-|++.-..||+||++.+.+.+.+.+||-.- +.                 ...+.+|+|+.-|+- |--   +|+++.-
T Consensus       147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~-g~-----------------~~~kLvGIvT~RD~r-f~d~~~~V~evMT  207 (556)
T 4af0_A          147 DPLCLGPDATVGDVLEIKAKFGFCGVPITET-GE-----------------PDSKLLGIVTGRDVQ-FQDAETPIKSVMT  207 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCCCCCHHHHHHHHHHhCCCccccccc-cC-----------------cCCEEEEEEeccccc-ccccceEhhhhcc
Confidence            6789999999999999999999999999762 11                 146799999999964 321   1777765


Q ss_pred             CCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC
Q 041297           92 KDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG  126 (379)
Q Consensus        92 ~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~  126 (379)
                      +   -|.++..++++-||.++|. ..+..|+|++..
T Consensus       208 ~---~lvt~~~~~~leeA~~iL~~~kieklpVVd~~  240 (556)
T 4af0_A          208 T---EVVTGSSPITLEKANSLLRETKKGKLPIVDSN  240 (556)
T ss_dssp             ------------------------------------
T ss_pred             c---ceEEecCCCCHHHHHHHHHHccccceeEEccC
Confidence            3   2889999999999999999 588888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.3
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.27
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.26
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.26
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.19
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.13
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.07
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.99
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.98
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.94
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.9
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.88
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.88
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.83
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.81
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.8
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.78
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.77
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.75
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.7
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.7
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.69
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.64
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.64
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.63
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.62
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.62
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.6
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.59
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.58
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.57
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.56
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.56
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.55
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.53
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.53
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.52
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.51
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.49
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.41
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.36
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.31
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.28
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.26
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.19
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.18
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.17
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.15
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.13
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	97.94
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	97.89

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=8.2e-13  Score=108.77  Aligned_cols=128  Identities=17%  Similarity=0.194  Sum_probs=93.0

Q ss_pred             CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      ..++|.+||++..+++.+|+.++++.+|+++|.+.  +.+++||||.+|+++|-|+..|+..                  
T Consensus         4 ~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~--~~~~ipVvd~~~~~vG~it~~Di~~------------------   63 (140)
T d2nyca1           4 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG--RVSSVPIIDENGYLINVYEAYDVLG------------------   63 (140)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHH------------------
T ss_pred             ccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHc--CCcEEEEEecCCeEcceehhhHHHH------------------
Confidence            46899999998877799999999999999999886  6699999999999999998877633                  


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                       ++..+... .        +..+    ..+.+..    .                              ..-...+++|.
T Consensus        64 -~~~~~~~~-~--------~~~~----~~~~~~~----~------------------------------~~~~~~~~~v~   95 (140)
T d2nyca1          64 -LIKGGIYN-D--------LSLS----VGEALMR----R------------------------------SDDFEGVYTCT   95 (140)
T ss_dssp             -HHHTC-------------CCSB----HHHHHHH----C------------------------------C------CEEC
T ss_pred             -HHhhcccc-c--------cccc----hhhhhhh----h------------------------------hhcccccEEEC
Confidence             11100000 0        0000    0000000    0                              00124468999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.++|.++|..+..++.|+++|||++|.++|+|+.+
T Consensus        96 ~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~  131 (140)
T d2nyca1          96 KNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS  131 (140)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             CCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHH
Confidence            999999999999999999999999999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.27  E-value=3e-12  Score=108.37  Aligned_cols=121  Identities=13%  Similarity=0.080  Sum_probs=93.1

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      +=|++....|+.+|++.|.+++...+|||+.+                    .++++|++++.||+-++..         
T Consensus        31 ~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~--------------------~~~~vGiis~~Di~~~l~~~~~~~~~~~   90 (179)
T d2ooxe1          31 RLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE--------------------ANKFAGLLTMADFVNVIKYYYQSSSFPE   90 (179)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHTCSCEEEEETT--------------------TTEEEEEECHHHHHHHHHHHHHHCSCGG
T ss_pred             cEEEEECcchHHHHHHHHHHcCCCeEEEEeCC--------------------CCeeEEEEeechHHHHHHhccccccchh
Confidence            45788999999999999999999999999854                    2579999999999877652         


Q ss_pred             -ccccc-------------cCC-CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEee
Q 041297           86 -CFCSF-------------AKD-SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLT  149 (379)
Q Consensus        86 -VS~li-------------~~~-~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LT  149 (379)
                       ...+.             ... ...+++++|+++|.||++.|. +|+||+.|+++..+.          ++..=-.++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~----------~~~~vvgiiT  160 (179)
T d2ooxe1          91 AIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET----------GSEMIVSVLT  160 (179)
T ss_dssp             GGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTT----------CCEEEEEEEE
T ss_pred             hhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCc----------CCCcEEEEEe
Confidence             11110             011 234789999999999999999 699999998753221          1111223999


Q ss_pred             HHHHHHHHHhhhcccC
Q 041297          150 QEDLIRYFLNFIGLLN  165 (379)
Q Consensus       150 QeDVvRFLl~~ig~l~  165 (379)
                      |.||+|||..++.+..
T Consensus       161 ~~dIlk~l~~~~~~~~  176 (179)
T d2ooxe1         161 QYRILKFISMNCKETA  176 (179)
T ss_dssp             HHHHHHHHHTTCGGGG
T ss_pred             HHHHHHHHHHhhhHhh
Confidence            9999999999988754

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1.7e-12  Score=106.92  Aligned_cols=127  Identities=18%  Similarity=0.209  Sum_probs=93.4

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMA  248 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a  248 (379)
                      .+++.+|++....++..|..++++.+|+++|.+.  +.+++||||.+|+++|-||..|+...-                 
T Consensus         8 ~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~--~~~~lpVvd~~~~~~Gvit~~di~~~l-----------------   68 (145)
T d2v8qe1           8 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQH--RVSALPVVDEKGRVVDIYSKFDVINLA-----------------   68 (145)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHH--CCSEEEEECTTSBEEEEEEGGGTGGGG-----------------
T ss_pred             hCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHc--CCCcccccccCCceEEEEEcchhhhhh-----------------
Confidence            5789999886643399999999999999999886  559999999999999999998885411                 


Q ss_pred             hhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecC
Q 041297          249 YMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYP  328 (379)
Q Consensus       249 ~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p  328 (379)
                        ...                                ...       + .+...+... .      .+..-...+++|.+
T Consensus        69 --~~~--------------------------------~~~-------~-~~~~v~~~~-~------~~~~~~~~~~~v~~   99 (145)
T d2v8qe1          69 --AEK--------------------------------TYN-------N-LDVSVTKAL-Q------HRSHYFEGVLKCYL   99 (145)
T ss_dssp             --GSS--------------------------------CCC-------C-CSSBHHHHG-G------GCCSCCCSCCEECT
T ss_pred             --hcc--------------------------------ccc-------c-hhhhhhhcc-c------hhhhccCCCeEECC
Confidence              000                                000       0 000000000 0      00012245789999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          329 WSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       329 ~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..||.+++..+..||+|++||||++|.++|+|+..
T Consensus       100 ~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~  134 (145)
T d2v8qe1         100 HETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLS  134 (145)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             CCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHH
Confidence            99999999999999999999999999999999853

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=5.4e-12  Score=104.60  Aligned_cols=140  Identities=16%  Similarity=0.103  Sum_probs=87.2

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      .+++ ++.|+.++|+.+|+++|++.  ..+++||||++|++||-||-.|+..+......                  +..
T Consensus        10 m~r~-v~~v~~~~~l~~a~~~m~~~--~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~------------------~~~   68 (156)
T d2yzqa1          10 YQRY-VSIVWEGTPLKAALKALLLS--NSMALPVVDSEGNLVGIVDETDLLRDSEIVRI------------------MKS   68 (156)
T ss_dssp             SBSC-CCCEETTSBHHHHHHHHHTC--SSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------------
T ss_pred             hcCC-CeEECCcCcHHHHHHHHHHc--CCCEEEEEeCCCCceeEEeeeechhhhccccc------------------ccc
Confidence            5677 99999999999999999987  56999999999999999998888542210000                  000


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                      ..  ....    ..    ...+.     .....     .     ..+....+......+.--..++++|.+..||.+++.
T Consensus        69 ~~--~~~~----~~----~~~~~-----~~~~~-----~-----~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~  123 (156)
T d2yzqa1          69 TE--LAAS----SE----EEWIL-----ESHPT-----L-----LFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVAL  123 (156)
T ss_dssp             -----------------------------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHH
T ss_pred             cc--cccc----hh----hhhhh-----hhhhh-----h-----hHHHhhhcccCCEeehhcccCceEECcccccHHHHH
Confidence            00  0000    00    00000     00000     0     000000000011111112345899999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEee
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      .+..||++|++|+|++|.++|+|+..
T Consensus       124 ~m~~~~~~~lpVvd~~g~lvGivt~~  149 (156)
T d2yzqa1         124 KMAKYSIEQLPVIRGEGDLIGLIRDF  149 (156)
T ss_dssp             HHHHHTCSEEEEEETTTEEEEEEEHH
T ss_pred             HHHHcCeeEEEEEeCCCEEEEEEEHH
Confidence            99999999999999999999999854

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=9.3e-12  Score=103.45  Aligned_cols=114  Identities=20%  Similarity=0.319  Sum_probs=89.4

Q ss_pred             ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------cc
Q 041297           16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------CF   87 (379)
Q Consensus        16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------VS   87 (379)
                      =|++....|+.+|++.|.+++..++||++.+                    ..+++|++++.|++-++-+        ..
T Consensus        25 vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~--------------------~~~~vG~is~~Dl~~~~~~~~~~~~~~~~   84 (159)
T d2v8qe2          25 LVVFDTSLQVKKAFFALVTNGVRAAPLWDSK--------------------KQSFVGMLTITDFINILHRYYKSALVQIY   84 (159)
T ss_dssp             EEEEETTSBHHHHHHHHHHHTCSEEEEEETT--------------------TTEEEEEEEHHHHHHHHHHHHHHHTTTCC
T ss_pred             eEEEcCCCcHHHHHHHHHHcCCCceeEEECC--------------------CCcEEEEEEHHHHHHHHHhccccccchhh
Confidence            3788999999999999999999999999853                    2469999999999887764        00


Q ss_pred             c-----------cc-cCCCCceEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHH
Q 041297           88 C-----------SF-AKDSGIVRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLI  154 (379)
Q Consensus        88 ~-----------li-~~~~gll~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVv  154 (379)
                      .           .. +-....+++++|+++|.||++.|.+ |+||++|+++...+        ...      .+||+||+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~--------~~G------ivT~~dil  150 (159)
T d2v8qe2          85 ELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN--------TLY------ILTHKRIL  150 (159)
T ss_dssp             CGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCC--------EEE------EECHHHHH
T ss_pred             hhhhhhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCe--------EEE------EEeHHHHH
Confidence            0           00 1112457899999999999999995 99999998643211        111      89999999


Q ss_pred             HHHHhhhcc
Q 041297          155 RYFLNFIGL  163 (379)
Q Consensus       155 RFLl~~ig~  163 (379)
                      |||..+|+|
T Consensus       151 k~l~~~~~~  159 (159)
T d2v8qe2         151 KFLKLFITE  159 (159)
T ss_dssp             HHHHHHSCS
T ss_pred             HHHHHHcCC
Confidence            999988875

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.13  E-value=1.4e-11  Score=102.91  Aligned_cols=125  Identities=13%  Similarity=0.085  Sum_probs=90.5

Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhh
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYM  250 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~v  250 (379)
                      +|+++++-..++++.|+.++++.+|+++|.+.  ..+++||+|.+|+++|-|+..||...-.........+.+.|+    
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~--~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~----   75 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEK--NISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEA----   75 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHT--TCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHH----
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHc--CcceEeeecccceEEEEEEeeeeeehhccccccccccchhhh----
Confidence            56778877544499999999999999999986  559999999999999999988874310000000000000000    


Q ss_pred             ccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCC
Q 041297          251 DCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWS  330 (379)
Q Consensus       251 d~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~S  330 (379)
                                                  +.     . .                            ..-....++|++..
T Consensus        76 ----------------------------~~-----~-~----------------------------~~~~~~~~~v~~~~   93 (153)
T d2ooxe2          76 ----------------------------LL-----K-R----------------------------PANFDGVHTCRATD   93 (153)
T ss_dssp             ----------------------------HH-----T-S----------------------------CCCSSCCCEECTTC
T ss_pred             ----------------------------ee-----e-e----------------------------ecccCCCeEECCCC
Confidence                                        00     0 0                            00123468999999


Q ss_pred             cHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          331 SLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       331 SLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +|.+++..+..|++++++|||++|.++|+|+..
T Consensus        94 ~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~  126 (153)
T d2ooxe2          94 RLDGIFDAIKHSRVHRLFVVDENLKLEGILSLA  126 (153)
T ss_dssp             BHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHH
T ss_pred             cHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHH
Confidence            999999999999999999999999999999865

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.07  E-value=3.6e-10  Score=95.32  Aligned_cols=138  Identities=10%  Similarity=0.053  Sum_probs=89.7

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      .+++.++-..+.+ +.+++.+.++.+|+.+|.+.  +.+++||+|++ |+++|-||..||...-       ..       
T Consensus        19 ~~~~~dvm~~s~~-vv~i~~~~~v~~A~~~m~~~--~i~~lpVvd~~~~~~vGiis~~Di~~~l-------~~-------   81 (179)
T d2ooxe1          19 SRTSYDVLPTSFR-LIVFDVTLFVKTSLSLLTLN--NIVSAPLWDSEANKFAGLLTMADFVNVI-------KY-------   81 (179)
T ss_dssp             HSBHHHHSCSEEE-EEEEETTSBHHHHHHHHHHH--TCSCEEEEETTTTEEEEEECHHHHHHHH-------HH-------
T ss_pred             CCEeeeeCCCCCc-EEEEECcchHHHHHHHHHHc--CCCeEEEEeCCCCeeEEEEeechHHHHH-------Hh-------
Confidence            4578888777788 99999999999999999986  66999999975 7999999988875410       00       


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                       +...                 .........+...     .         .+. .... ..      ....-...+++|.
T Consensus        82 -~~~~-----------------~~~~~~~~~~~~~-----~---------~~~-~~~~-~~------~~~~~~~~~i~v~  121 (179)
T d2ooxe1          82 -YYQS-----------------SSFPEAIAEIDKF-----R---------LLG-LREV-ER------KIGAIPPETIYVH  121 (179)
T ss_dssp             -HHHH-----------------CSCGGGGGGGGGS-----B---------HHH-HHHH-HH------HTTCSCSSCCCBC
T ss_pred             -cccc-----------------ccchhhhhhhhcc-----c---------hhh-hccc-ce------eeeecccCceEEC
Confidence             0000                 0000000000000     0         000 0000 00      0001234579999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCCCC-----cccceEee
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAENP-----NFCPVRIQ  363 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~-----l~~~v~~~  363 (379)
                      +..||..++..+..|++||+||+|++|.     ++|++...
T Consensus       122 ~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~  162 (179)
T d2ooxe1         122 PMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQY  162 (179)
T ss_dssp             TTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHH
T ss_pred             CCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHH
Confidence            9999999999999999999999999875     56777643

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=2.2e-10  Score=93.60  Aligned_cols=126  Identities=11%  Similarity=0.063  Sum_probs=86.3

Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCCh
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPL  256 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~pp  256 (379)
                      +++++ ...|..++++.+|++.|.+.  ..+++||||.+|+++|-||..||..+....              +...    
T Consensus         9 ~m~~~-p~~v~~~~~v~~a~~~m~~~--~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~--------------~~~~----   67 (145)
T d1o50a3           9 LISLK-PTVVEEDTPIEEIVDRILED--PVTRTVYVARDNKLVGMIPVMHLLKVSGFH--------------FFGF----   67 (145)
T ss_dssp             SSCCC-CEEECTTCBHHHHHHHHHHS--TTCCEEEEEETTEEEEEEEHHHHHHHHHHH--------------HHCC----
T ss_pred             hCCCC-CEEECCcCcHHHHHHHHHHc--CCceEEEeccCcceeeeeccchhhhhhhcc--------------cccc----
Confidence            35677 89999999999999999986  559999999999999999988875421100              0000    


Q ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHH
Q 041297          257 KDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVI  336 (379)
Q Consensus       257 e~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVM  336 (379)
                                            ....   ...       . .+.   . .+.   ..... .-...+++|++..+|..++
T Consensus        68 ----------------------~~~~---~~~-------~-~~~---~-~~~---~~~~~-~~~~~~~~i~~~~~l~~a~  106 (145)
T d1o50a3          68 ----------------------IPKE---ELI-------R-SSM---K-RLI---AKNAS-EIMLDPVYVHMDTPLEEAL  106 (145)
T ss_dssp             ----------------------CC------------------CC---C-CCS---SCBHH-HHCBCCCCBCTTSBHHHHH
T ss_pred             ----------------------cchh---HHH-------H-hhh---h-hcc---ccCHH-HHcCCCEEEcCCCCHHHHH
Confidence                                  0000   000       0 000   0 000   00000 0113478999999999999


Q ss_pred             HHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          337 MQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       337 aQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .++..|++++++|||++|.++|+|+..-
T Consensus       107 ~~m~~~~i~~lpVVd~~g~i~Gvit~~d  134 (145)
T d1o50a3         107 KLMIDNNIQEMPVVDEKGEIVGDLNSLE  134 (145)
T ss_dssp             HHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             HHHHHcCceEEEEEeCCCeEEEEEEHHH
Confidence            9999999999999999999999998643

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=6e-10  Score=92.26  Aligned_cols=133  Identities=8%  Similarity=-0.009  Sum_probs=89.9

Q ss_pred             CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC-CCcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297          169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE-EGRLVGDISPFSLNSCDETVAAAIATLLAGDLM  247 (379)
Q Consensus       169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~-dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~  247 (379)
                      .+|+.||-..+.+ +..++.++++.+|+++|.+.  ..+++|||++ +|+++|-||..||-.....              
T Consensus        12 ~~t~~Dlm~~~~~-vv~l~~~~sv~eA~~~l~~~--~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~--------------   74 (159)
T d2v8qe2          12 SHRCYDLIPTSSK-LVVFDTSLQVKKAFFALVTN--GVRAAPLWDSKKQSFVGMLTITDFINILHR--------------   74 (159)
T ss_dssp             HSBGGGGSCSEEE-EEEEETTSBHHHHHHHHHHH--TCSEEEEEETTTTEEEEEEEHHHHHHHHHH--------------
T ss_pred             CCEEEeECCCCCc-eEEEcCCCcHHHHHHHHHHc--CCCceeEEECCCCcEEEEEEHHHHHHHHHh--------------
Confidence            3588888666777 99999999999999999986  5599999987 5799999988776431100              


Q ss_pred             hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297          248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY  327 (379)
Q Consensus       248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~  327 (379)
                          +              ....+..              .      ..............      .......++++|+
T Consensus        75 ----~--------------~~~~~~~--------------~------~~~~~~~~~~~~~~------~~~~~~~~~~~v~  110 (159)
T d2v8qe2          75 ----Y--------------YKSALVQ--------------I------YELEEHKIETWREV------YLQDSFKPLVCIS  110 (159)
T ss_dssp             ----H--------------HHHHTTT--------------C------CCGGGCBHHHHHHH------HSSSSCCCCCCBC
T ss_pred             ----c--------------cccccch--------------h------hhhhhhhcccccce------eeeeeccceEEEC
Confidence                0              0000000              0      00000000000000      0011335679999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEeeCC-CCcccceEe
Q 041297          328 PWSSLMAVIMQALARRDRLRSMAKAE-NPNFCPVRI  362 (379)
Q Consensus       328 p~SSLvAVMaQAlaHRV~~vWVvd~e-~~l~~~v~~  362 (379)
                      |..+|..||..+..|++||++|+|.| |.++|+|+.
T Consensus       111 ~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~  146 (159)
T d2v8qe2         111 PNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTH  146 (159)
T ss_dssp             TTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECH
T ss_pred             CCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeH
Confidence            99999999999999999999999964 789999974

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.94  E-value=1.1e-09  Score=91.17  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=93.3

Q ss_pred             cccccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----
Q 041297           11 MHWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----   85 (379)
Q Consensus        11 ~~~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----   85 (379)
                      -.|.|=+++....|+.+|++.+.+++...+||++.+                     .+++|+++.-||+-++..     
T Consensus         9 g~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---------------------~~~vG~it~~Dl~~~~~~~~~~~   67 (153)
T d2ooxe2           9 GTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE---------------------GTLLNVYESVDVMHLIQDGDYSN   67 (153)
T ss_dssp             SBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG---------------------GBEEEEEEHHHHHHHHGGGCGGG
T ss_pred             CCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc---------------------ceEEEEEEeeeeeehhccccccc
Confidence            368999999999999999999999999999999832                     369999999999887763     


Q ss_pred             ----ccccccCC---CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHH
Q 041297           86 ----CFCSFAKD---SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF  157 (379)
Q Consensus        86 ----VS~li~~~---~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFL  157 (379)
                          +++++...   ...+..+.|+++|.|+++.|. +|+|+++|++...+-               .=.+|+.||++|+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l---------------vGivT~~Dil~~~  132 (153)
T d2ooxe2          68 LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKL---------------EGILSLADILNYI  132 (153)
T ss_dssp             GGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBE---------------EEEEEHHHHHHHH
T ss_pred             cccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEE---------------EEEEEHHHHHHHH
Confidence                55554322   234678999999999999998 899999998643221               1189999999999


Q ss_pred             Hhhh
Q 041297          158 LNFI  161 (379)
Q Consensus       158 l~~i  161 (379)
                      +..-
T Consensus       133 ~~~~  136 (153)
T d2ooxe2         133 IYDK  136 (153)
T ss_dssp             HSCT
T ss_pred             HcCc
Confidence            7643

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.90  E-value=1.6e-09  Score=89.65  Aligned_cols=118  Identities=16%  Similarity=0.214  Sum_probs=92.1

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++..+.   +.+|+|+++|.||++.|. +|.++++|++...+-               +=++|+.|++|++...-...
T Consensus         5 v~dim~~~---~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~---------------~Giit~~di~~~~~~~~~~~   66 (142)
T d1pvma4           5 VEKIMNSN---FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGND---------------VGLLSERSIIKRFIPRNKKP   66 (142)
T ss_dssp             GGGTSBTT---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCE---------------EEEEEHHHHHHHTGGGCCCG
T ss_pred             HHHhCCCC---CcEECCcCcHHHHHHHHHHCCCceEeeeccCCcc---------------cceEEeechhhhhhhhcccc
Confidence            66666532   669999999999999998 699999997643221               22899999999876533221


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                         ...+++++  .+++ +..++.+++..+|+++|.+.  +...+||||.+|+++|-||..||-.
T Consensus        67 ---~~~~v~~i--m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd~~g~l~Giit~~Dil~  123 (142)
T d1pvma4          67 ---DEVPIRLV--MRKP-IPKVKSDYDVKDVAAYLSEN--GLERCAVVDDPGRVVGIVTLTDLSR  123 (142)
T ss_dssp             ---GGSBGGGT--SBSS-CCEEETTCBHHHHHHHHHHH--TCSEEEEECTTCCEEEEEEHHHHTT
T ss_pred             ---cccccccc--cccc-cccccchhhHHHHHHHHHHc--CCcEEEEEecCCEEEEEEEHHHHHH
Confidence               23345554  3567 99999999999999999876  5589999999999999999999866

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.88  E-value=2.9e-09  Score=87.32  Aligned_cols=117  Identities=14%  Similarity=0.058  Sum_probs=83.3

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      .+++ +.+++.+++..+|++.|.+.  +.+.+||||.+|+++|.||..+|...                   ..      
T Consensus         8 M~~~-~~~v~~~~tl~~a~~~m~~~--~~~~lpVvd~~~~~~Giit~~dl~~~-------------------~~------   59 (139)
T d2o16a3           8 MTRH-PHTLLRTHTLNDAKHLMEAL--DIRHVPIVDANKKLLGIVSQRDLLAA-------------------QE------   59 (139)
T ss_dssp             SEES-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHHH-------------------HH------
T ss_pred             CcCC-CeEECCcCCHHHHHHHHHHc--CCCeeeeecccccccccccHHHHHHH-------------------HH------
Confidence            4566 89999999999999999986  56999999999999999998777431                   10      


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                             ..+..+..         .   ...      ..  +             .....-..+++++|++..+|.+++.
T Consensus        60 -------~~~~~~~~---------~---~~~------~~--~-------------~~v~~im~~~~~~v~~~~~l~~a~~   99 (139)
T d2o16a3          60 -------SSLQRSAQ---------G---DSL------AF--E-------------TPLFEVMHTDVTSVAPQAGLKESAI   99 (139)
T ss_dssp             -------HHCC---------------------------C--C-------------CBHHHHSCSCEEEBCTTSBHHHHHH
T ss_pred             -------hhhhhhhc---------c---ccc------cc--c-------------cchhHhhccccccccccchHHHHHH
Confidence                   00000000         0   000      00  0             0000012356899999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEee
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      .+..|++++++|+|+ |.++|+|+..
T Consensus       100 ~m~~~~~~~lpVvd~-~~lvGiit~~  124 (139)
T d2o16a3         100 YMQKHKIGCLPVVAK-DVLVGIITDS  124 (139)
T ss_dssp             HHHHTTCSCEEEEET-TEEEEEECHH
T ss_pred             HHHHcCceEEEEEEC-CEEEEEEEHH
Confidence            999999999999995 8899999854

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.88  E-value=4.1e-09  Score=87.11  Aligned_cols=112  Identities=11%  Similarity=0.090  Sum_probs=85.5

Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCCh
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPL  256 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~pp  256 (379)
                      +.+++ +.+|+.+++..+|++.|++.  +.+.++|+|.+|+++|-|+-.|+..                  .++..+..+
T Consensus         8 im~~~-~~~v~~~~tl~~a~~~m~~~--~~~~~~V~d~~~~~~Giit~~di~~------------------~~~~~~~~~   66 (142)
T d1pvma4           8 IMNSN-FKTVNWNTTVFDAVKIMNEN--HLYGLVVKDDNGNDVGLLSERSIIK------------------RFIPRNKKP   66 (142)
T ss_dssp             TSBTT-CCEEETTCBHHHHHHHHHHH--TCCEEEEECTTSCEEEEEEHHHHHH------------------HTGGGCCCG
T ss_pred             hCCCC-CcEECCcCcHHHHHHHHHHC--CCceEeeeccCCcccceEEeechhh------------------hhhhhcccc
Confidence            35677 99999999999999999886  5589999999999999998777621                  011111000


Q ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHH
Q 041297          257 KDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVI  336 (379)
Q Consensus       257 e~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVM  336 (379)
                      ..                             .+      . .+                  --...+++|+++.+|.+++
T Consensus        67 ~~-----------------------------~~------v-~~------------------im~~~~~~v~~~~~l~~~~   92 (142)
T d1pvma4          67 DE-----------------------------VP------I-RL------------------VMRKPIPKVKSDYDVKDVA   92 (142)
T ss_dssp             GG-----------------------------SB------G-GG------------------TSBSSCCEEETTCBHHHHH
T ss_pred             cc-----------------------------cc------c-cc------------------ccccccccccchhhHHHHH
Confidence            00                             00      0 00                  0124579999999999999


Q ss_pred             HHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          337 MQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       337 aQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..+..+++++++|+|++|.++|+|+..
T Consensus        93 ~~m~~~~~~~lpVvd~~g~l~Giit~~  119 (142)
T d1pvma4          93 AYLSENGLERCAVVDDPGRVVGIVTLT  119 (142)
T ss_dssp             HHHHHHTCSEEEEECTTCCEEEEEEHH
T ss_pred             HHHHHcCCcEEEEEecCCEEEEEEEHH
Confidence            999999999999999999999999954

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=6.9e-09  Score=84.87  Aligned_cols=112  Identities=11%  Similarity=0.043  Sum_probs=88.5

Q ss_pred             cccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------
Q 041297           13 WCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------   85 (379)
Q Consensus        13 ~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------   85 (379)
                      |-|=+++....|+.||++.+.+++..++||.+.+                     ++++|+|+..||+-++..       
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~---------------------~~~~Gvit~~di~~~l~~~~~~~~~   77 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK---------------------GRVVDIYSKFDVINLAAEKTYNNLD   77 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT---------------------SBEEEEEEGGGTGGGGGSSCCCCCS
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCcccccccC---------------------CceEEEEEcchhhhhhhcccccchh
Confidence            4566888999999999999999999999998732                     469999999999988873       


Q ss_pred             --ccccccC---CCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297           86 --CFCSFAK---DSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  159 (379)
Q Consensus        86 --VS~li~~---~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~  159 (379)
                        +......   ....+..+.|+++|.|+++.|. +++|+++|++...+               =.-++|+.||+|||+.
T Consensus        78 ~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~---------------l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          78 VSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDV---------------VKGIVSLSDILQALVL  142 (145)
T ss_dssp             SBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSB---------------EEEEEEHHHHHHHHHS
T ss_pred             hhhhhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCE---------------EEEEEEHHHHHHHHHh
Confidence              2222211   1234668999999999999998 79999999864221               1239999999999986


Q ss_pred             h
Q 041297          160 F  160 (379)
Q Consensus       160 ~  160 (379)
                      .
T Consensus       143 ~  143 (145)
T d2v8qe1         143 T  143 (145)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.81  E-value=7.2e-10  Score=89.28  Aligned_cols=110  Identities=10%  Similarity=0.105  Sum_probs=82.1

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      .+++ +.+|+.+++..+|+++|++.  +.+++||+|.+|+++|-||..||...-                  +..     
T Consensus         7 M~~~-~~~v~~~~tl~~a~~~m~~~--~~~~~pVvd~~~~~~Giit~~Di~~~~------------------~~~-----   60 (123)
T d1y5ha3           7 MNAG-VTCVGEHETLTAAAQYMREH--DIGALPICGDDDRLHGMLTDRDIVIKG------------------LAA-----   60 (123)
T ss_dssp             SEET-CCCEETTSBHHHHHHHHHHH--TCSEEEEECGGGBEEEEEEHHHHHHTT------------------GGG-----
T ss_pred             cCCC-CcEECCcCcHHHHHHHHHHc--CCCceEEEeccchhhhhhhhhhHhhhh------------------hhc-----
Confidence            3566 89999999999999999886  559999999999999999977763200                  000     


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                                   +..          . ...      .. ++.                  -+..+++|++..+|..++.
T Consensus        61 -------------~~~----------~-~~~------~v-~~i------------------m~~~~~~v~~~~~~~~~~~   91 (123)
T d1y5ha3          61 -------------GLD----------P-NTA------TA-GEL------------------ARDSIYYVDANASIQEMLN   91 (123)
T ss_dssp             -------------TCC----------T-TTS------BH-HHH------------------HTTCCCCEETTCCHHHHHH
T ss_pred             -------------CCC----------c-ccc------eE-EEE------------------eeccceeeeecchHHHHHH
Confidence                         000          0 000      00 000                  1245789999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEee
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      .+..|+++++-|+| +|.++|+|+.+
T Consensus        92 ~m~~~~~~~lpVvd-~~~lvGiit~~  116 (123)
T d1y5ha3          92 VMEEHQVRRVPVIS-EHRLVGIVTEA  116 (123)
T ss_dssp             HHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             HHHHcCceEEEEEE-CCEEEEEEEHH
Confidence            99999999999999 57899999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=5.1e-09  Score=85.61  Aligned_cols=113  Identities=13%  Similarity=0.061  Sum_probs=88.2

Q ss_pred             CcccccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc----
Q 041297           10 PMHWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----   85 (379)
Q Consensus        10 ~~~~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----   85 (379)
                      ..-|-+=+++....|+.||++.+.+++..++||++.+                     ++++|+++.-||+-++..    
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~---------------------~~~vG~it~~Di~~~~~~~~~~   71 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN---------------------GYLINVYEAYDVLGLIKGGIYN   71 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---------------------CBEEEEEEHHHHHHHHHTC---
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC---------------------CeEcceehhhHHHHHHhhcccc
Confidence            4457788899999999999999999999999999832                     469999999999988874    


Q ss_pred             -----ccccccCC---CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           86 -----CFCSFAKD---SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        86 -----VS~li~~~---~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                           +...+...   ......+.|+++|.+|++.|. ++.|++.|+++..+-               .=.+|+.||++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l---------------~GiIt~~Dii~~  136 (140)
T d2nyca1          72 DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRL---------------VGVLTLSDILKY  136 (140)
T ss_dssp             -CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBE---------------EEEEEHHHHHHH
T ss_pred             ccccchhhhhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeE---------------EEEEEHHHHHHH
Confidence                 22222111   134678999999999999999 599999998643221               119999999999


Q ss_pred             HH
Q 041297          157 FL  158 (379)
Q Consensus       157 Ll  158 (379)
                      |+
T Consensus       137 l~  138 (140)
T d2nyca1         137 IL  138 (140)
T ss_dssp             HH
T ss_pred             Hh
Confidence            86

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.78  E-value=2.9e-09  Score=86.00  Aligned_cols=110  Identities=17%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC------CCCC
Q 041297           98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP------TPNQ  170 (379)
Q Consensus        98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p------~p~~  170 (379)
                      ..+.|+++|.||+++|. +|+++++|.++....                 ++|..|+++++......+..      ....
T Consensus        12 ~~v~~~~tl~~a~~~m~~~~~~~l~V~d~~lvg-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2          12 PILSKEDRLGSAFKKINEGGIGRIIVANEKIEG-----------------LLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             CEECTTSBHHHHHHHTTGGGCCEEEEESSSEEE-----------------EEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             eEECCCCcHHHHHHHHHHhCCeEEEEEecceec-----------------eeeccchhhhhccccccchhhhhccccccC
Confidence            46999999999999997 799999997654333                 88888888887543332221      1244


Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      +++++.  +.+ +.+++.++++.+|+++|.+.  +.+.+||||.+|+++|-||-.|+-.
T Consensus        75 ~v~~im--~~~-~~~v~~~~~l~~a~~~m~~~--~i~~lpVvd~~g~lvGiit~~Dil~  128 (135)
T d3ddja2          75 PIIDYM--TPN-PVTVYNTSDEFTAINIMVTR--NFGSLPVVDINDKPVGIVTEREFLL  128 (135)
T ss_dssp             BGGGTS--EES-CCCEETTSCHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHGG
T ss_pred             CHHHHh--CCc-cceEEeccccchhhhhhhhc--ceeEEEEEeCCCEEEEEEEHHHHHH
Confidence            555543  556 88999999999999999875  5589999999999999999988744

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.77  E-value=6e-09  Score=85.82  Aligned_cols=111  Identities=15%  Similarity=0.035  Sum_probs=85.5

Q ss_pred             cCcccccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---
Q 041297            9 RPMHWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---   85 (379)
Q Consensus         9 ~~~~~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---   85 (379)
                      ++.+--+=+++....++.+|+..+++++..++||++.+                     +++||+++.-|++-++..   
T Consensus         7 ~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~---------------------~~lvG~it~~Dl~~~~~~~~~   65 (156)
T d2yzqa1           7 EPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE---------------------GNLVGIVDETDLLRDSEIVRI   65 (156)
T ss_dssp             TTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT---------------------SCEEEEEEGGGGGGCGGGCC-
T ss_pred             HHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC---------------------CCceeEEeeeechhhhccccc
Confidence            34444466888999999999999999999999999832                     469999999998654331   


Q ss_pred             -----------------------------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCccc
Q 041297           86 -----------------------------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKL  129 (379)
Q Consensus        86 -----------------------------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~  129 (379)
                                                         |.++..   ..+.++.|+++|.|+++.|. +|+|+++|+++..+-
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~---~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l  142 (156)
T d2yzqa1          66 MKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMT---RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDL  142 (156)
T ss_dssp             -------------------------------CCCBGGGTCB---SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEE
T ss_pred             ccccccccchhhhhhhhhhhhhhHHHhhhcccCCEeehhcc---cCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEE
Confidence                                               111111   12677999999999999999 699999998754322


Q ss_pred             CCCCCCcccccCCcceEEeeHHHHHHHHH
Q 041297          130 QPKPSLKSTFHNDSEYCWLTQEDLIRYFL  158 (379)
Q Consensus       130 ~~~~s~~~~~~~~~~yC~LTQeDVvRFLl  158 (379)
                      .         .      ++|++||+|+|+
T Consensus       143 v---------G------ivt~~Dil~~l~  156 (156)
T d2yzqa1         143 I---------G------LIRDFDLLKVLV  156 (156)
T ss_dssp             E---------E------EEEHHHHGGGGC
T ss_pred             E---------E------EEEHHHHHHHhC
Confidence            1         1      999999999874

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.75  E-value=3.5e-09  Score=85.91  Aligned_cols=113  Identities=18%  Similarity=0.214  Sum_probs=89.9

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC--CCCCccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP--TPNQPIN  173 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p--~p~~SI~  173 (379)
                      +.+|+|+++|.||+++|. +|+++++|++...+.               +-++|..|+++++.........  ....+|.
T Consensus        12 v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~---------------~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~   76 (141)
T d3ddja1          12 VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKV---------------VGIVTVVNAIKQLAKAVDKLDPDYFYGKVVK   76 (141)
T ss_dssp             CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHHHHHHHHTCTHHHHTCBHH
T ss_pred             CeEEcCcCcHHHHHHHHHHcCCCeeecccccCcc---------------ccccccccchhhhhccccccccccccCCCHH
Confidence            688999999999999999 799999997653322               3399999999999775543322  2344555


Q ss_pred             ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      ++  .+++ +..+..+++..+|+++|.+.  +...+||||.+|+++|-||-.|+-.
T Consensus        77 ~i--m~~~-~~~v~~~~~~~~~~~~m~~~--~~~~l~Vvd~~~~~iGiIt~~Dil~  127 (141)
T d3ddja1          77 DV--MVTN-LVTIDELASVNRAAAEMIVK--RIGSLLILNKDNTIRGIITERDLLI  127 (141)
T ss_dssp             HH--SBCC-CCBCCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             HH--hCcc-cccccccchhhHHHHHHHHc--CCCEEEEEccCCEEEEEEEHHHHHH
Confidence            43  3566 88999999999999999885  5588999999999999999888753

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=8.5e-09  Score=83.92  Aligned_cols=111  Identities=19%  Similarity=0.197  Sum_probs=84.9

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccC----------
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLN----------  165 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~----------  165 (379)
                      ...|.|++++.||++.|. +|+++++|++...+               -.-.+|+.|+++++......+-          
T Consensus        14 p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~---------------~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~   78 (145)
T d1o50a3          14 PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNK---------------LVGMIPVMHLLKVSGFHFFGFIPKEELIRSSM   78 (145)
T ss_dssp             CEEECTTCBHHHHHHHHHHSTTCCEEEEEETTE---------------EEEEEEHHHHHHHHHHHHHCCCC-------CC
T ss_pred             CEEECCcCcHHHHHHHHHHcCCceEEEeccCcc---------------eeeeeccchhhhhhhcccccccchhHHHHhhh
Confidence            478999999999999999 69999999764322               1239999999999976543222          


Q ss_pred             -CCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          166 -PTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       166 -p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                       .+...++.   .+..+ .+.+..++++.+|++.|.+.  +...+||||.+|+++|-||..|+-
T Consensus        79 ~~~~~~~~~---~~~~~-~~~i~~~~~l~~a~~~m~~~--~i~~lpVVd~~g~i~Gvit~~dil  136 (145)
T d1o50a3          79 KRLIAKNAS---EIMLD-PVYVHMDTPLEEALKLMIDN--NIQEMPVVDEKGEIVGDLNSLEIL  136 (145)
T ss_dssp             CCCSSCBHH---HHCBC-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             hhccccCHH---HHcCC-CEEEcCCCCHHHHHHHHHHc--CceEEEEEeCCCeEEEEEEHHHHH
Confidence             12222222   23345 67899999999999999886  568999999999999999987763

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.70  E-value=1.9e-08  Score=81.25  Aligned_cols=106  Identities=15%  Similarity=0.108  Sum_probs=82.0

Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC--CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE--EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCG  253 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~--dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~  253 (379)
                      |.+. + .+.|..+++..+|+++|.+.  ..+++||||.  +|+++|-||-.||...                   ... 
T Consensus         2 gmi~-d-pvtv~~~~tv~~a~~~m~~~--~~~~~pVvD~~~~~~lvGivt~~Di~~~-------------------~~~-   57 (126)
T d1zfja4           2 GVII-D-PFFLTPEHKVSEAEELMQRY--RISGVPIVETLANRKLVGIITNRDMRFI-------------------SDY-   57 (126)
T ss_dssp             TTSS-S-CCCBCSSSBHHHHHHHHHHT--TCSEEEEESCTTTCBEEEEEEHHHHHHC-------------------SCS-
T ss_pred             CCEe-C-ceEECCCCCHHHHHHHHHHh--CCCcEEEEeeccCCeEEEEeEHHHHHHh-------------------hcc-
Confidence            5554 4 46899999999999999986  5599999997  7899999988776320                   000 


Q ss_pred             CChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHH
Q 041297          254 RPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLM  333 (379)
Q Consensus       254 ~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLv  333 (379)
                                                      . .+.     . +.                  -.+..++++.+..+|.
T Consensus        58 --------------------------------~-~~~-----~-~~------------------~~~~~~~~~~~~~~l~   80 (126)
T d1zfja4          58 --------------------------------N-API-----S-EH------------------MTSEHLVTAAVGTDLE   80 (126)
T ss_dssp             --------------------------------S-SBT-----T-TS------------------CCCSCCCCEETTCCHH
T ss_pred             --------------------------------C-Cce-----e-ee------------------eeccceeecCCCCCHH
Confidence                                            0 000     0 00                  1234568999999999


Q ss_pred             HHHHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297          334 AVIMQALARRDRLRSMAKAENPNFCPVRI  362 (379)
Q Consensus       334 AVMaQAlaHRV~~vWVvd~e~~l~~~v~~  362 (379)
                      .++..+..|+++++.|||++|.++|+|+.
T Consensus        81 ~a~~~m~~~~~~~lpVVd~~g~lvGiiT~  109 (126)
T d1zfja4          81 TAERILHEHRIEKLPLVDNSGRLSGLITI  109 (126)
T ss_dssp             HHHHHHHHTTCSEEEEECTTSBEEEEEEH
T ss_pred             HHHHHHHhcCCcEEEEEcCCCeEEEEEEH
Confidence            99999999999999999999999999984

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.70  E-value=4e-08  Score=78.91  Aligned_cols=116  Identities=19%  Similarity=0.181  Sum_probs=89.2

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL  163 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~  163 (379)
                      |+++.-+.   +.++.|++++.||++.|. +|..+++|+... ..+              -.=++|..|+++++.+....
T Consensus         3 V~dim~~~---~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~--------------~iGi~~~~dl~~~~~~~~~~   65 (131)
T d2riha1           3 TSELLKRP---PVSLPETATIREVATELAKNRVGLAVLTARDNPKR--------------PVAVVSERDILRAVAQRLDL   65 (131)
T ss_dssp             GGGGCCSC---CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEE--------------EEEEEEHHHHHHHHHTTCCT
T ss_pred             HHHhccCC---CEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCE--------------EEEEEeeecccccccccccc
Confidence            67777542   468999999999999998 699999996432 221              11289999999999875431


Q ss_pred             cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                      .     .   ......++ ...+.++++..+|+++|.+.  +...+||||.+|+++|=||-.||-.
T Consensus        66 ~-----~---~~~~~~~~-~~~v~~~~~~~~a~~~m~~~--~i~~lpVvd~~g~l~Giit~~Dll~  120 (131)
T d2riha1          66 D-----G---PAMPIANS-PITVLDTDPVHVAAEKMRRH--NIRHVVVVNKNGELVGVLSIRDLCF  120 (131)
T ss_dssp             T-----S---BSGGGCBC-CCEEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHS
T ss_pred             c-----c---cccccccc-ceeEeeecchHHHHHHHHHC--CeEEEEEEcCCCeEEEEEEHHHHHH
Confidence            1     1   11234456 78899999999999999886  5589999999999999999988844

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.69  E-value=1.5e-08  Score=81.80  Aligned_cols=107  Identities=17%  Similarity=0.270  Sum_probs=87.0

Q ss_pred             ceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           96 IVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        96 ll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      -+..++|+++|.||++.|. +++++++|+++.                .-+.++|..|+++.+.....     ...++.+
T Consensus        13 ~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~----------------~~~Givt~~dl~~~~~~~~~-----~~~~v~~   71 (127)
T d2ef7a1          13 QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN----------------KPVGIITERDIVKAIGKGKS-----LETKAEE   71 (127)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHTCSEEEEEETT----------------EEEEEEEHHHHHHHHHTTCC-----TTCBGGG
T ss_pred             CCeEECCcCcHHHHHHHHHHcCCceEEeeccc----------------chhhhcchhHHHHHHHhhcc-----ccchhhh
Confidence            3678999999999999998 699999998642                23459999999999875432     2344444


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      +  .+++ ++.|..+++..+|++.|.+.  +.+.+||||.+|+++|-||..||-
T Consensus        72 ~--~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~~~lvGiit~~Dll  120 (127)
T d2ef7a1          72 F--MTAS-LITIREDSPITGALALMRQF--NIRHLPVVDDKGNLKGIISIRDIT  120 (127)
T ss_dssp             T--SEEC-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             h--hhhh-ccccccccchhHHHHHHHHc--CceEEEEEeCCCeEEEEEEHHHHH
Confidence            3  3566 89999999999999999886  458999999999999999998874

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.64  E-value=2.1e-08  Score=81.12  Aligned_cols=117  Identities=13%  Similarity=0.124  Sum_probs=84.3

Q ss_pred             Ccccccccc-cCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhh
Q 041297          170 QPINSHNII-DDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMA  248 (379)
Q Consensus       170 ~SI~sLG~I-~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a  248 (379)
                      +||+++--- +++ ++.|.+++++.+|+++|++.  +.+++||++ +|+++|-|+-.||..       ++          
T Consensus         2 ~tV~dim~~k~~~-v~~i~~~~tl~~a~~~m~~~--~~~~vpV~~-~~~~vGiit~~Di~~-------~~----------   60 (127)
T d2rc3a1           2 KTVKHLLQEKGHT-VVAIGPDDSVFNAMQKMAAD--NIGALLVMK-DEKLVGILTERDFSR-------KS----------   60 (127)
T ss_dssp             CBHHHHHHHHCCC-CCEECTTSBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHH-------HG----------
T ss_pred             ccHHHHHccCCCc-cEEECCcCcHHHHHHHHHHc--CCCEEEEEE-CCeEEEEEEccchhh-------hh----------
Confidence            455554222 246 99999999999999999986  558999998 789999998776621       00          


Q ss_pred             hhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecC
Q 041297          249 YMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYP  328 (379)
Q Consensus       249 ~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p  328 (379)
                       ...+.++.+                             .                         ....--.+.+++|++
T Consensus        61 -~~~~~~~~~-----------------------------~-------------------------~v~~im~~~~~~v~~   85 (127)
T d2rc3a1          61 -YLLDKPVKD-----------------------------T-------------------------QVKEIMTRQVAYVDL   85 (127)
T ss_dssp             -GGSSSCGGG-----------------------------S-------------------------BGGGTSBCSCCCBCT
T ss_pred             -hhhcccccc-----------------------------e-------------------------eEeeeccceeEEecc
Confidence             000000000                             0                         000012356799999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          329 WSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       329 ~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      ..++.+++..+..++++|+=|+| +|.++|+|+..
T Consensus        86 ~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~  119 (127)
T d2rc3a1          86 NNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIG  119 (127)
T ss_dssp             TCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             CccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHH
Confidence            99999999999999999999999 68999999853

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.64  E-value=3.2e-08  Score=80.94  Aligned_cols=119  Identities=15%  Similarity=0.123  Sum_probs=88.9

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++.-+   -+..+.|+++|.||+++|. +|+++++|++...+-               .=.+|+.|+++++.+.+..+
T Consensus         4 v~diM~~---~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~---------------~Giit~~dl~~~~~~~~~~~   65 (139)
T d2o16a3           4 VEDMMTR---HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKL---------------LGIVSQRDLLAAQESSLQRS   65 (139)
T ss_dssp             GGGTSEE---SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEEHHHHHHHHHHHCC--
T ss_pred             HHHhCcC---CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccc---------------cccccHHHHHHHHHhhhhhh
Confidence            4555532   2577999999999999999 599999998643211               11899999999998876543


Q ss_pred             CC----CCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NP----TPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p----~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ..    ....+|.++  .+++ +..|+.+++..+|+++|.+.  +...+|||| +|+++|-||-.|+-
T Consensus        66 ~~~~~~~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd-~~~lvGiit~~Dil  127 (139)
T d2o16a3          66 AQGDSLAFETPLFEV--MHTD-VTSVAPQAGLKESAIYMQKH--KIGCLPVVA-KDVLVGIITDSDFV  127 (139)
T ss_dssp             -------CCCBHHHH--SCSC-EEEBCTTSBHHHHHHHHHHT--TCSCEEEEE-TTEEEEEECHHHHH
T ss_pred             hcccccccccchhHh--hccc-cccccccchHHHHHHHHHHc--CceEEEEEE-CCEEEEEEEHHHHH
Confidence            32    223455553  3567 99999999999999999885  557899998 69999999988773

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.63  E-value=4.6e-08  Score=79.12  Aligned_cols=124  Identities=10%  Similarity=0.059  Sum_probs=88.5

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      .+++ +.+|+.+++..+|+++|++.  ..+++||++.+|+++|-|+..++..+-..               ..+-     
T Consensus         8 Mt~~-v~~v~~~~tl~~a~~~m~~~--~~~~ipVv~~~~~~~g~i~~~di~~~~~~---------------~~~~-----   64 (141)
T d3ddja1           8 MSTK-VQTIYKEVRLDQAVKLMLRR--GFRRLPVIDDDNKVVGIVTVVNAIKQLAK---------------AVDK-----   64 (141)
T ss_dssp             SBCS-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHHHHH---------------HHHH-----
T ss_pred             CcCC-CeEEcCcCcHHHHHHHHHHc--CCCeeecccccCccccccccccchhhhhc---------------cccc-----
Confidence            4566 99999999999999999986  66999999999999999998887431100               0000     


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                                  ....    ..      ...+                         .+.--...++++.+..++..++.
T Consensus        65 ------------~~~~----~~------~~~~-------------------------v~~im~~~~~~v~~~~~~~~~~~   97 (141)
T d3ddja1          65 ------------LDPD----YF------YGKV-------------------------VKDVMVTNLVTIDELASVNRAAA   97 (141)
T ss_dssp             ------------TCTH----HH------HTCB-------------------------HHHHSBCCCCBCCTTSBHHHHHH
T ss_pred             ------------cccc----cc------cCCC-------------------------HHHHhCcccccccccchhhHHHH
Confidence                        0000    00      0000                         00001245789999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEeehhhHHHHH
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQAKKQQLSR  371 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~~~~~~~~~  371 (379)
                      .+..++.+++.|+|++|.++|+|+..-=-+.+.+
T Consensus        98 ~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          98 EMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             HHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999986554444433

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.62  E-value=1.1e-08  Score=82.88  Aligned_cols=107  Identities=18%  Similarity=0.325  Sum_probs=84.2

Q ss_pred             ceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297           96 IVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS  174 (379)
Q Consensus        96 ll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s  174 (379)
                      -+..+.|+++|.||+++|. +|+..++|+++. +               -.-++|..|++|++...-.   +....++.+
T Consensus        14 ~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~-~---------------~vGiit~~Di~~~~~~~~~---~~~~~~v~~   74 (127)
T d2rc3a1          14 TVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-K---------------LVGILTERDFSRKSYLLDK---PVKDTQVKE   74 (127)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEEETT-E---------------EEEEEEHHHHHHHGGGSSS---CGGGSBGGG
T ss_pred             ccEEECCcCcHHHHHHHHHHcCCCEEEEEECC-e---------------EEEEEEccchhhhhhhhcc---cccceeEee
Confidence            4788999999999999999 799999987642 1               1229999999998754332   222344554


Q ss_pred             cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                        +.+++ +..+.+++++.+|++.|.+.  +...+|||| +|+++|-||..||
T Consensus        75 --im~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd-~~~~~GiIt~~Di  121 (127)
T d2rc3a1          75 --IMTRQ-VAYVDLNNTNEDCMALITEM--RVRHLPVLD-DGKVIGLLSIGDL  121 (127)
T ss_dssp             --TSBCS-CCCBCTTCBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHH
T ss_pred             --eccce-eEEeccCccHHHHHHHHHHC--CCcEEEEEE-CCEEEEEEEHHHH
Confidence              34577 99999999999999999885  558999998 7999999998876

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=9.6e-09  Score=82.52  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=81.8

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..++|++++.||+++|. +|+++++|+++..+-               +=++|..|++++++.+-..   .....+.++
T Consensus        11 ~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~---------------~Giit~~Di~~~~~~~~~~---~~~~~v~~i   72 (123)
T d1y5ha3          11 VTCVGEHETLTAAAQYMREHDIGALPICGDDDRL---------------HGMLTDRDIVIKGLAAGLD---PNTATAGEL   72 (123)
T ss_dssp             CCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBE---------------EEEEEHHHHHHTTGGGTCC---TTTSBHHHH
T ss_pred             CcEECCcCcHHHHHHHHHHcCCCceEEEeccchh---------------hhhhhhhhHhhhhhhcCCC---cccceEEEE
Confidence            567999999999999997 699999998643221               1199999999887654221   112223322


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                        .+++ +..++.++++.+|++.|.+.  +...+|||| +|+++|=||..|+
T Consensus        73 --m~~~-~~~v~~~~~~~~~~~~m~~~--~~~~lpVvd-~~~lvGiit~~Di  118 (123)
T d1y5ha3          73 --ARDS-IYYVDANASIQEMLNVMEEH--QVRRVPVIS-EHRLVGIVTEADI  118 (123)
T ss_dssp             --HTTC-CCCEETTCCHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHH
T ss_pred             --eecc-ceeeeecchHHHHHHHHHHc--CceEEEEEE-CCEEEEEEEHHHH
Confidence              3455 99999999999999999875  558999998 6899999998886

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.60  E-value=4e-08  Score=79.06  Aligned_cols=106  Identities=17%  Similarity=0.155  Sum_probs=72.6

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK  257 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe  257 (379)
                      ..++ +..+..++++.+|+++|.+.  +.+.+||||++|+++|-|+-.+|..-+                   +     +
T Consensus         7 M~~~-~v~v~~~~~v~~a~~~m~~~--~~~~~~Vvd~~~~~~G~it~~dl~~~~-------------------~-----~   59 (122)
T d2yzqa2           7 MTQN-PVTITLPATRNYALELFKKY--KVRSFPVVNKEGKLVGIISVKRILVNP-------------------D-----E   59 (122)
T ss_dssp             SEES-CCCEESSCC--------------CCEEEEECTTCCEEEEEESSCC------------------------------
T ss_pred             cCCC-CEEECCcCcHHHHHHHHHHc--CCcEEEEEeccccchhhhhcchhhhhh-------------------c-----c
Confidence            3456 88999999999999999885  559999999999999999988875300                   0     0


Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297          258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM  337 (379)
Q Consensus       258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa  337 (379)
                                                  . .       . ++.                  -..++++|++..+|.+++.
T Consensus        60 ----------------------------~-~-------~-~~~------------------~~~~~~~v~~~~~l~~~~~   84 (122)
T d2yzqa2          60 ----------------------------E-Q-------L-AML------------------VKRDVPVVKENDTLKKAAK   84 (122)
T ss_dssp             -----------------------------------------CC------------------CBSCCCEEETTSBHHHHHH
T ss_pred             ----------------------------c-c-------h-hhc------------------cccceeecchhhHHHHHHH
Confidence                                        0 0       0 000                  1234689999999999999


Q ss_pred             HHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          338 QALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       338 QAlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      .+..|+++++=|+|++|.++|+|+.+--
T Consensus        85 ~~~~~~~~~lpVvd~~~~liGiit~~di  112 (122)
T d2yzqa2          85 LMLEYDYRRVVVVDSKGKPVGILTVGDI  112 (122)
T ss_dssp             HHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             HHHHcCcEEEEEEeCCCEEEEEEEHHHH
Confidence            9999999999999999999999986543

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.59  E-value=1.9e-08  Score=81.48  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=88.6

Q ss_pred             ceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-ccCCCCCCccc
Q 041297           96 IVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-LLNPTPNQPIN  173 (379)
Q Consensus        96 ll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~l~p~p~~SI~  173 (379)
                      -+.+|+|+++|-||+++|. +|..++.|+++..+-.               =++|..||++++..... .+......++.
T Consensus        13 ~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~v---------------Giit~~di~~~~~~~~~~~~~~~~~~~v~   77 (132)
T d1yava3          13 KVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLH---------------GLIGTNMIMNSIFGLERIEFEKLDQITVE   77 (132)
T ss_dssp             GSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEE---------------EEEEHHHHHHHHBCSSSBCGGGTTTSBHH
T ss_pred             ceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccc---------------cEEEcchhHHHhhcccccccccccccccc
Confidence            4788999999999999999 7999999987532211               18999999999987533 34455667777


Q ss_pred             ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ++  .+++ +..|..+++..+|+..|.+.    .-+||||.+|+++|-|+-.|+-
T Consensus        78 ~~--m~~~-~~~v~~~~~l~~~~~~~~~~----~~l~Vvd~~~~~~Givt~~dil  125 (132)
T d1yava3          78 EV--MLTD-IPRLHINDPIMKGFGMVINN----GFVCVENDEQVFEGIFTRRVVL  125 (132)
T ss_dssp             HH--SBCS-CCEEETTSBHHHHHHHTTTC----SEEEEECTTCBEEEEEEHHHHH
T ss_pred             cc--cccc-ccccccchhHHHHHHHHHhC----CEEEEEccCCEEEEEEEHHHHH
Confidence            64  4567 99999999999999998653    3499999999999999887763

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=1.3e-07  Score=75.60  Aligned_cols=106  Identities=12%  Similarity=0.084  Sum_probs=86.6

Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCCh
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPL  256 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~pp  256 (379)
                      +++++ +..|+.+++.-+|++.|++.  +.++++|||.+|+++|-|+..||..-+.                  +     
T Consensus         6 ~m~~~-~~~v~~~~tv~ea~~~m~~~--~~~~v~Vvd~~~~~~Gii~~~dl~~~~~------------------~-----   59 (121)
T d1vr9a3           6 WVTQD-FPMVEESATVRECLHRMRQY--QTNECIVKDREGHFRGVVNKEDLLDLDL------------------D-----   59 (121)
T ss_dssp             GCBSC-SCEEETTCBHHHHHHHHHHT--TSSEEEEECTTSBEEEEEEGGGGTTSCT------------------T-----
T ss_pred             hhcCC-CeEECCCCCHHHHHHhhhhc--CcEEEEEEeCCceeEEEeehhhhhhhhc------------------c-----
Confidence            35677 99999999999999999986  5699999999999999999988864100                  0     


Q ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHH
Q 041297          257 KDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVI  336 (379)
Q Consensus       257 e~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVM  336 (379)
                                                   ...         .+                  -....++++++..+|.+++
T Consensus        60 -----------------------------~~v---------~~------------------~~~~~~~~v~~~~~l~~~~   83 (121)
T d1vr9a3          60 -----------------------------SSV---------FN------------------KVSLPDFFVHEEDNITHAL   83 (121)
T ss_dssp             -----------------------------SBS---------GG------------------GCBCTTCCEETTSBHHHHH
T ss_pred             -----------------------------ccc---------cc------------------cccCccEEECCCCCHHHHH
Confidence                                         000         00                  0224578999999999999


Q ss_pred             HHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          337 MQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       337 aQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      .++..+++.++=|+|++|.++|+|...-
T Consensus        84 ~~~~~~~~~~lpVvde~g~~~Gvit~~d  111 (121)
T d1vr9a3          84 LLFLEHQEPYLPVVDEEMRLKGAVSLHD  111 (121)
T ss_dssp             HHHHHCCCSEEEEECTTCBEEEEEEHHH
T ss_pred             HHHHhcCceeeeeECCCCeEEEEEEHHH
Confidence            9999999999999999999999998743

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=4.2e-08  Score=79.40  Aligned_cols=103  Identities=11%  Similarity=0.076  Sum_probs=82.5

Q ss_pred             cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----------
Q 041297           17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----------   85 (379)
Q Consensus        17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----------   85 (379)
                      +++....|+++|++.+.+++...+||.+.+                     ++++|+++.-||+-++++           
T Consensus        15 ~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~---------------------~~~vGiit~~di~~~~~~~~~~~~~~~~~   73 (132)
T d1yava3          15 AHVQVGNNLEHALLVLTKTGYTAIPVLDPS---------------------YRLHGLIGTNMIMNSIFGLERIEFEKLDQ   73 (132)
T ss_dssp             CCEETTCBHHHHHHHHHHHCCSEEEEECTT---------------------CBEEEEEEHHHHHHHHBCSSSBCGGGTTT
T ss_pred             EEEcCCCCHHHHHHHHHhhCCCceEEeecc---------------------cccccEEEcchhHHHhhcccccccccccc
Confidence            567888999999999999999999999732                     469999999999987764           


Q ss_pred             --ccccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCCc--ccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297           86 --CFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGI--KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI  161 (379)
Q Consensus        86 --VS~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~~--k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i  161 (379)
                        |+++..+   .+..++|+++|.++++.|.+. +.++|+++..  ..                 .+|++||++||..+|
T Consensus        74 ~~v~~~m~~---~~~~v~~~~~l~~~~~~~~~~-~~l~Vvd~~~~~~G-----------------ivt~~dil~~l~~~i  132 (132)
T d1yava3          74 ITVEEVMLT---DIPRLHINDPIMKGFGMVINN-GFVCVENDEQVFEG-----------------IFTRRVVLKELNKHI  132 (132)
T ss_dssp             SBHHHHSBC---SCCEEETTSBHHHHHHHTTTC-SEEEEECTTCBEEE-----------------EEEHHHHHHHHHHHC
T ss_pred             ccccccccc---cccccccchhHHHHHHHHHhC-CEEEEEccCCEEEE-----------------EEEHHHHHHHHHhhC
Confidence              4454432   367999999999999999874 3455565422  23                 999999999998754

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.56  E-value=6.1e-08  Score=78.12  Aligned_cols=116  Identities=14%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhh
Q 041297          170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAY  249 (379)
Q Consensus       170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~  249 (379)
                      .+|.+  +.+++ +++++++++..+|+++|++.  +.+.+||+| +|+++|-||..||..+                   
T Consensus         4 ~~V~d--~m~~~-~v~v~~~~tl~~a~~~m~~~--~~~~~pV~d-~~~~~Givt~~dl~~~-------------------   58 (127)
T d2ef7a1           4 EIVKE--YMKTQ-VISVTKDAKLNDIAKVMTEK--NIGSVIVVD-GNKPVGIITERDIVKA-------------------   58 (127)
T ss_dssp             CBGGG--TSBCS-CCEEETTCBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHHH-------------------
T ss_pred             cCHHH--hCCCC-CeEECCcCcHHHHHHHHHHc--CCceEEeec-ccchhhhcchhHHHHH-------------------
Confidence            34554  34677 99999999999999999886  568999998 5899999998776321                   


Q ss_pred             hccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCC
Q 041297          250 MDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPW  329 (379)
Q Consensus       250 vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~  329 (379)
                      +..+                                ...   . ... ++.                  -...+++|++.
T Consensus        59 ~~~~--------------------------------~~~---~-~~v-~~~------------------~~~~~~~v~~~   83 (127)
T d2ef7a1          59 IGKG--------------------------------KSL---E-TKA-EEF------------------MTASLITIRED   83 (127)
T ss_dssp             HHTT--------------------------------CCT---T-CBG-GGT------------------SEECCCCEETT
T ss_pred             HHhh--------------------------------ccc---c-chh-hhh------------------hhhhccccccc
Confidence            1100                                000   0 000 010                  12457899999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297          330 SSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK  365 (379)
Q Consensus       330 SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~  365 (379)
                      .+|.++...+..|+++|+.|+|++|.++|+|+..--
T Consensus        84 ~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dl  119 (127)
T d2ef7a1          84 SPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDI  119 (127)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             cchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHH
Confidence            999999999999999999999999999999986543

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.56  E-value=5.7e-08  Score=77.75  Aligned_cols=105  Identities=12%  Similarity=0.123  Sum_probs=82.4

Q ss_pred             eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +.+|+|++|+-||++.|. +|.+.++|.+++ +-               +=.+|+.|+++++.....    ....++.++
T Consensus        10 ~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~-~~---------------~Gvit~~Di~~~l~~~~~----~~~~~v~~~   69 (120)
T d1pbja3          10 VDTIDITASLEDVLRNYVENAKGSSVVVKEG-VR---------------VGIVTTWDVLEAIAEGDD----LAEVKVWEV   69 (120)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEEETT-EE---------------EEEEEHHHHHHHHHHTCC----TTTSBHHHH
T ss_pred             CeEECCcCcHHHHHHHHHHcCceEEEEEeCC-cE---------------EEEEEeeecccccccccc----ccceeEeee
Confidence            568999999999999998 688777776542 11               128999999999976432    334556553


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                        .+++ +..|+.++++.+|++.|++.  ....+||+| +|+++|-||..|+
T Consensus        70 --m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~l~V~~-~~~l~Givt~~Di  115 (120)
T d1pbja3          70 --MERD-LVTISPRATIKEAAEKMVKN--VVWRLLVEE-DDEIIGVISATDI  115 (120)
T ss_dssp             --CBCG-GGEECTTSCHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHH
T ss_pred             --cccc-cccccchhHHHHHHHHHHHc--CCeEEEEEE-CCEEEEEEEHHHH
Confidence              4667 89999999999999999886  347899876 7999999998876

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.55  E-value=1.1e-07  Score=77.29  Aligned_cols=115  Identities=22%  Similarity=0.290  Sum_probs=87.8

Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL  164 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l  164 (379)
                      |+++..+   -+.+++|++++.||++.|. +|..+++|+++..+-.         .      .+|+.||++++...-.  
T Consensus         7 V~~im~~---~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~---------G------iit~~di~~~~~~~~~--   66 (132)
T d2yzia1           7 IKVYMTK---KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVV---------G------FFTKSDIIRRVIVPGL--   66 (132)
T ss_dssp             GGGTCBC---CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEE---------E------EEEHHHHHHHTTTTCC--
T ss_pred             HHHHcCC---CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceee---------e------eeeHHHHHHHHhhccC--
Confidence            5566543   3789999999999999999 6889999877532210         1      8999999998876421  


Q ss_pred             CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                        -...++.++  ..++ +..+++++++.+|++.|.+.  ....+||+ .+|+++|-||-.|+-
T Consensus        67 --~~~~~v~~i--m~~~-~~~v~~~~~~~~~~~~m~~~--~~~~l~V~-~~~~~vGivt~~Dil  122 (132)
T d2yzia1          67 --PYDIPVERI--MTRN-LITANVNTPLGEVLRKMAEH--RIKHILIE-EEGKIVGIFTLSDLL  122 (132)
T ss_dssp             --CTTSBGGGT--CBCS-CCEEETTSBHHHHHHHHHHH--TCSEEEEE-ETTEEEEEEEHHHHH
T ss_pred             --ccceeEeec--cccc-ccccCcchHHHHHHHHHHHc--CCCEEEEE-ECCEEEEEEEHHHHH
Confidence              134566664  4567 89999999999999999876  44788865 579999999988763

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.53  E-value=8e-08  Score=78.27  Aligned_cols=110  Identities=12%  Similarity=0.083  Sum_probs=84.7

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------   85 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------   85 (379)
                      |-+++....|+.+|++.|++++..++||++.+.                   ...++|+++..|++-++.+         
T Consensus        20 ~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~-------------------~~~lvg~is~~dl~~~l~~~~~~~~~~~   80 (160)
T d2d4za3          20 DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD-------------------TNTLLGSIDRTEVEGLLQRRISAYRRQP   80 (160)
T ss_dssp             SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT-------------------TCBEEEEEEHHHHHHHHHHHHHTTSSSC
T ss_pred             CCeEECCCCcHHHHHHHHHhcCCCccccccccc-------------------cccccccchHHHHHHHHhhccccccccc
Confidence            667888899999999999999999999999543                   2578999999999887763         


Q ss_pred             --------------------ccccccCC-CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCc
Q 041297           86 --------------------CFCSFAKD-SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDS  143 (379)
Q Consensus        86 --------------------VS~li~~~-~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~  143 (379)
                                          ....+... .-.+.+|+|+++|-+|+++|. .|+++++|.+.+ +-.+            
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g-~lvG------------  147 (160)
T d2d4za3          81 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMG-KLVG------------  147 (160)
T ss_dssp             CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETT-EEEE------------
T ss_pred             hhhccccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEECC-EEEE------------
Confidence                                01111111 112567999999999999999 599999997653 2111            


Q ss_pred             ceEEeeHHHHHHHHHh
Q 041297          144 EYCWLTQEDLIRYFLN  159 (379)
Q Consensus       144 ~yC~LTQeDVvRFLl~  159 (379)
                         .+|++||++.+.|
T Consensus       148 ---iIt~~Di~k~I~g  160 (160)
T d2d4za3         148 ---VVALAEIQAAIEG  160 (160)
T ss_dssp             ---EEEHHHHHHHHHC
T ss_pred             ---EEEHHHHHHHhCC
Confidence               9999999998753

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=9.7e-08  Score=80.10  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=81.5

Q ss_pred             cCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------------
Q 041297           19 LGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------------   85 (379)
Q Consensus        19 ~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------------   85 (379)
                      .....|++||+..|.+++...+||=..+.                   .++++|+|+.-||+-++..             
T Consensus        22 ~~~~~tv~~a~~ll~~~~~~~~PVV~~~~-------------------~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1          22 TQDSMTVEDVETIISETTYSGFPVVVSRE-------------------SQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             ESSCEEHHHHHHHHHHCCCSEEEEESCTT-------------------TCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             CCCcCCHHHHHHHHHHcCCCceeeeecCC-------------------CCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            46778999999999999999999987443                   2579999999999876652             


Q ss_pred             -------------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcce
Q 041297           86 -------------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEY  145 (379)
Q Consensus        86 -------------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~y  145 (379)
                                         |+++..+   .+..|.|+++|.+++++|. .|+++++|.+++ +-.         .     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~im~~---~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g-~lv---------G-----  144 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPPTLKLRNILDL---SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLL---------G-----  144 (169)
T ss_dssp             EECSSSCCCCCTTCCCCEECGGGEES---SCCEEETTSBHHHHHHHHHHHTCSEEEEEETT-EEE---------E-----
T ss_pred             hhhcccchhhhhccccccchhhhccC---CCEEECCCCcHHHHHHHHHhcCceEEEEEECC-EEE---------E-----
Confidence                               3333322   2568999999999999997 689999887653 111         1     


Q ss_pred             EEeeHHHHHHHHHhh
Q 041297          146 CWLTQEDLIRYFLNF  160 (379)
Q Consensus       146 C~LTQeDVvRFLl~~  160 (379)
                       ++|+.||+|||.+.
T Consensus       145 -iIt~~Dil~~l~~~  158 (169)
T d2j9la1         145 -IITKKDVLKHIAQM  158 (169)
T ss_dssp             -EEEHHHHHHHHHHH
T ss_pred             -EEEHHHHHHHHHHH
Confidence             99999999999763

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.52  E-value=1.5e-07  Score=76.41  Aligned_cols=111  Identities=17%  Similarity=0.103  Sum_probs=84.9

Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCG  253 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~  253 (379)
                      +-+++ ++++..++++-+|++.|++.-.   ....++|||.+|+++|-++..+|..-+..       .++.|        
T Consensus         6 iM~~d-~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~~~-------~~v~~--------   69 (127)
T d2ouxa2           6 IMTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDDD-------TLIAD--------   69 (127)
T ss_dssp             HCBSC-CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCTT-------SBHHH--------
T ss_pred             hCCCC-cEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccccc-------EEhhh--------
Confidence            34567 9999999999999999987532   23679999999999999965555321100       00000        


Q ss_pred             CChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHH
Q 041297          254 RPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLM  333 (379)
Q Consensus       254 ~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLv  333 (379)
                                              .                                        =.+++++++|..+|.
T Consensus        70 ------------------------i----------------------------------------m~~~~~~v~~~~~l~   85 (127)
T d2ouxa2          70 ------------------------I----------------------------------------LNERVISVHVGDDQE   85 (127)
T ss_dssp             ------------------------H----------------------------------------SBSCCCCEETTSBHH
T ss_pred             ------------------------h----------------------------------------ccCCCccCCCCCCHH
Confidence                                    0                                        124478999999999


Q ss_pred             HHHHHHHHcCCcEEEEeeCCCCcccceEeehhhH
Q 041297          334 AVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQ  367 (379)
Q Consensus       334 AVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~~  367 (379)
                      .++..+..|+.+++=|+|++|.++|+|+.+---+
T Consensus        86 ~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~  119 (127)
T d2ouxa2          86 DVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIID  119 (127)
T ss_dssp             HHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHH
Confidence            9999999999999999999999999999765433

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.51  E-value=1.1e-07  Score=76.58  Aligned_cols=124  Identities=10%  Similarity=-0.001  Sum_probs=83.5

Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhh
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYM  250 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~v  250 (379)
                      +|+++-  .++ +..|..+++..+|+++|++.  ..+.+||+|  ++++|.++..++...-                ..-
T Consensus         2 ~V~~lM--~~~-~~~v~~~~tl~~a~~~m~~~--~~~~l~V~d--~~lvg~~~~~~~~~~~----------------~~~   58 (135)
T d3ddja2           2 NIETLM--IKN-PPILSKEDRLGSAFKKINEG--GIGRIIVAN--EKIEGLLTTRDLLSTV----------------ESY   58 (135)
T ss_dssp             SGGGTC--EES-CCEECTTSBHHHHHHHTTGG--GCCEEEEES--SSEEEEEEHHHHHGGG----------------TTC
T ss_pred             EeeEEe--eCC-CeEECCCCcHHHHHHHHHHh--CCeEEEEEe--cceeceeeccchhhhh----------------ccc
Confidence            345544  355 77899999999999999775  568999985  4799998877764310                000


Q ss_pred             ccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCC
Q 041297          251 DCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWS  330 (379)
Q Consensus       251 d~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~S  330 (379)
                      ....+...                ....+.     . .                         ..+.--+..+++|++..
T Consensus        59 ~~~~~~~~----------------~~~~~~-----~-~-------------------------~v~~im~~~~~~v~~~~   91 (135)
T d3ddja2          59 CKDSCSQG----------------DLYHIS-----T-T-------------------------PIIDYMTPNPVTVYNTS   91 (135)
T ss_dssp             C---CCHH----------------HHHHHH-----T-S-------------------------BGGGTSEESCCCEETTS
T ss_pred             cccchhhh----------------hccccc-----c-C-------------------------CHHHHhCCccceEEecc
Confidence            00000000                000000     0 0                         00011245679999999


Q ss_pred             cHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          331 SLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       331 SLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      ++.+++..+..|++++++|+|++|.++|+|+..-
T Consensus        92 ~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~D  125 (135)
T d3ddja2          92 DEFTAINIMVTRNFGSLPVVDINDKPVGIVTERE  125 (135)
T ss_dssp             CHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             ccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHH
Confidence            9999999999999999999999999999998653

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.49  E-value=3.8e-07  Score=74.14  Aligned_cols=133  Identities=10%  Similarity=-0.017  Sum_probs=84.5

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC--CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCC
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE--EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRP  255 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~--dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~p  255 (379)
                      -.++ +.+|++++++.+|+++|++.  +.+++||||.  +|.++|.+|-.+|..       ++......+.....+....
T Consensus        17 M~~~-~~~v~~~~tv~e~~~~l~~~--~~~~~PVvd~~~~~~lvg~is~~dl~~-------~l~~~~~~~~~~~~~~~~~   86 (160)
T d2d4za3          17 MVRD-VTSIASTSTYGDLLHVLRQT--KLKFFPFVDTPDTNTLLGSIDRTEVEG-------LLQRRISAYRRQPFEEMLT   86 (160)
T ss_dssp             SBSS-CCCEETTCBHHHHHHHHHHC--CCSEEEEESCTTTCBEEEEEEHHHHHH-------HHHHHHHTTSSSCCCSCCB
T ss_pred             cCCC-CeEECCCCcHHHHHHHHHhc--CCCccccccccccccccccchHHHHHH-------HHhhccccccccchhhccc
Confidence            3567 99999999999999999986  6699999996  479999999888743       1111111111100111000


Q ss_pred             hhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHH
Q 041297          256 LKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAV  335 (379)
Q Consensus       256 pe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAV  335 (379)
                      +.........            ..        .                  .   ........-...++++.|..||..+
T Consensus        87 ~~~~~~~~~~------------~~--------~------------------~---~~~~~~~~~~~~~~tv~~~~~l~~~  125 (160)
T d2d4za3          87 LEEIYRWEQR------------EK--------N------------------V---VVNFETCRIDQSPFQLVEGTSLQKT  125 (160)
T ss_dssp             HHHHHHHHHH------------HT--------T------------------C---BCCTTSSCEECCSCCBCTTCBHHHH
T ss_pred             cchhhhhhhh------------hc--------c------------------c---ccceeeecccCCCEEEcCCCCHHHH
Confidence            0000000000            00        0                  0   0000111123558999999999999


Q ss_pred             HHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297          336 IMQALARRDRLRSMAKAENPNFCPVRI  362 (379)
Q Consensus       336 MaQAlaHRV~~vWVvd~e~~l~~~v~~  362 (379)
                      +.-+..|+++|+=|+| +|.++|+|+-
T Consensus       126 ~~~m~~~~v~~l~V~d-~g~lvGiIt~  151 (160)
T d2d4za3         126 HTLFSLLGLDRAYVTS-MGKLVGVVAL  151 (160)
T ss_dssp             HHHHHHHTCSEEEEEE-TTEEEEEEEH
T ss_pred             HHHHHHcCCeEEEEEE-CCEEEEEEEH
Confidence            9999999999998877 7999999984

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.41  E-value=1.7e-07  Score=77.63  Aligned_cols=108  Identities=14%  Similarity=0.111  Sum_probs=85.0

Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccC
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCG  253 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~  253 (379)
                      +-+++ ++++.+++++-+|++.|++.-.   ....++|||.+|+++|-|+..+|..++..                    
T Consensus         6 iM~~~-~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~~--------------------   64 (144)
T d2yvxa2           6 LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPR--------------------   64 (144)
T ss_dssp             GCBSC-CCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCTT--------------------
T ss_pred             ccCCC-CEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcccc--------------------
Confidence            34566 9999999999999999976421   23689999999999999988887542210                    


Q ss_pred             CChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHH
Q 041297          254 RPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLM  333 (379)
Q Consensus       254 ~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLv  333 (379)
                                                      ...         .+                  --.+.+++++|..++.
T Consensus        65 --------------------------------~~v---------~~------------------im~~~~~~v~~~~~~~   85 (144)
T d2yvxa2          65 --------------------------------TRV---------AE------------------IMNPKVVYVRTDTDQE   85 (144)
T ss_dssp             --------------------------------CBS---------TT------------------TSBSSCCCEESSCCHH
T ss_pred             --------------------------------cch---------HH------------------hcccCCccCCCCChHH
Confidence                                            000         00                  0224578999999999


Q ss_pred             HHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297          334 AVIMQALARRDRLRSMAKAENPNFCPVRIQA  364 (379)
Q Consensus       334 AVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~  364 (379)
                      +++..+..|+.+++=|||++|.++|+|+.+-
T Consensus        86 ~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~D  116 (144)
T d2yvxa2          86 EVARLMADYDFTVLPVVDEEGRLVGIVTVDD  116 (144)
T ss_dssp             HHHHHHHHSCCSEEEEECSSCBEEEEEEHHH
T ss_pred             HHHHHHHHcCCCEEEEEeECCEEEEEEEHHH
Confidence            9999999999999999999999999999753

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=2.8e-07  Score=73.65  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=79.0

Q ss_pred             eEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297           97 VRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH  175 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL  175 (379)
                      +..|.|+++|-||++.|.+ +...++|+++..+-               +-++|..|++++          .+..++.++
T Consensus        11 ~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~---------------~Gii~~~dl~~~----------~~~~~v~~~   65 (121)
T d1vr9a3          11 FPMVEESATVRECLHRMRQYQTNECIVKDREGHF---------------RGVVNKEDLLDL----------DLDSSVFNK   65 (121)
T ss_dssp             SCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBE---------------EEEEEGGGGTTS----------CTTSBSGGG
T ss_pred             CeEECCCCCHHHHHHhhhhcCcEEEEEEeCCcee---------------EEEeehhhhhhh----------hcccccccc
Confidence            4579999999999999995 66666667543221               238888888754          224566665


Q ss_pred             ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297          176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS  229 (379)
Q Consensus       176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~  229 (379)
                        .+.+ ...++.+++..+|++.|.+.  +...+||||.+|+++|-|+..|+-.
T Consensus        66 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~lpVvde~g~~~Gvit~~dil~  114 (121)
T d1vr9a3          66 --VSLP-DFFVHEEDNITHALLLFLEH--QEPYLPVVDEEMRLKGAVSLHDFLE  114 (121)
T ss_dssp             --CBCT-TCCEETTSBHHHHHHHHHHC--CCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred             --ccCc-cEEECCCCCHHHHHHHHHhc--CceeeeeECCCCeEEEEEEHHHHHH
Confidence              3455 77899999999999999986  5589999999999999998877643

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.31  E-value=1.1e-06  Score=70.60  Aligned_cols=106  Identities=13%  Similarity=0.011  Sum_probs=84.6

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---cccccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---CFCSFA   91 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---VS~li~   91 (379)
                      |-+++....|+.+|++.+.+.+...+||-+..+                   .++++|+|+.-||.-....   ++..+-
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~-------------------~~~lvGivt~~Di~~~~~~~~~~~~~~~   66 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-------------------NRKLVGIITNRDMRFISDYNAPISEHMT   66 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-------------------TCBEEEEEEHHHHHHCSCSSSBTTTSCC
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeecc-------------------CCeEEEEeEHHHHHHhhccCCceeeeee
Confidence            567899999999999999999999999997322                   3579999999999776553   333332


Q ss_pred             CCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCc--ccCCCCCCcccccCCcceEEeeHHHHHHHHH
Q 041297           92 KDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGI--KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL  158 (379)
Q Consensus        92 ~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~--k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl  158 (379)
                      .  -.+.++.|++++.+|++.|. ++++++.|++...  ..                 ++|+.||+|.+.
T Consensus        67 ~--~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvG-----------------iiT~~Dil~~~~  117 (126)
T d1zfja4          67 S--EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSG-----------------LITIKDIEKVIE  117 (126)
T ss_dssp             C--SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEE-----------------EEEHHHHHHHHH
T ss_pred             c--cceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEE-----------------EEEHHHHHHHhh
Confidence            1  23567889999999999998 7999999986432  33                 999999999865

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.28  E-value=9.4e-07  Score=71.54  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=87.8

Q ss_pred             ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------
Q 041297           14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------   85 (379)
Q Consensus        14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------   85 (379)
                      .+-+++....|+.+|+..+.+++...+||.+.+                     ++++|+|+.-||+-.+..        
T Consensus        13 ~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~---------------------~~~~Giit~~di~~~~~~~~~~~~~~   71 (132)
T d2yzia1          13 KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD---------------------GNVVGFFTKSDIIRRVIVPGLPYDIP   71 (132)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT---------------------SCEEEEEEHHHHHHHTTTTCCCTTSB
T ss_pred             CCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc---------------------ceeeeeeeHHHHHHHHhhccCcccee
Confidence            456889999999999999999999999998843                     469999999999865542        


Q ss_pred             ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297           86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG  162 (379)
Q Consensus        86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig  162 (379)
                      |+++..+   .+..++|++++.||++.|. +|+++++|.+++ +               -.=.+|+.||+|.+..-+.
T Consensus        72 v~~im~~---~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~-~---------------~vGivt~~Dil~a~~~~le  130 (132)
T d2yzia1          72 VERIMTR---NLITANVNTPLGEVLRKMAEHRIKHILIEEEG-K---------------IVGIFTLSDLLEASRRRLE  130 (132)
T ss_dssp             GGGTCBC---SCCEEETTSBHHHHHHHHHHHTCSEEEEEETT-E---------------EEEEEEHHHHHHHHHCCSC
T ss_pred             Eeecccc---cccccCcchHHHHHHHHHHHcCCCEEEEEECC-E---------------EEEEEEHHHHHHHHHHHHc
Confidence            6666642   3668999999999999998 699999886542 1               1128999999999876543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.26  E-value=4.9e-08  Score=78.62  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=50.7

Q ss_pred             EeCCCCchhHHHHHHh-cCccEEEEecCCc-ccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297           99 HLKPSASLLEAVDLLL-GGVQNLVILPAGI-KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN  176 (379)
Q Consensus        99 ~V~P~tsLLdAie~m~-~G~~rllVi~s~~-k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG  176 (379)
                      +|.|+++|.||+++|. +|+.++.|+++.. .+       ....      ++|+-|+.....+..       ..++....
T Consensus         8 tv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~-------~lvG------ivT~~Di~~~~~~~~-------~~~~~~~~   67 (120)
T d1jr1a4           8 VLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS-------RLVG------IISSRDIDFLKEEEH-------DRFLEEIM   67 (120)
T ss_dssp             C----CCCC--CCBC---------------CTT-------CCC-----------------------------------CC
T ss_pred             EECCcCCHHHHHHHHHHhCCCeEEEeeccccCC-------eEee------eeeeeeeeehhcccc-------CceeEEEE
Confidence            7999999999999999 5999999987532 11       0111      788888743322222       34455555


Q ss_pred             cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      ..+++ +..+..+++..+|+++|++.  +...+||||.+|+|+|=|+-.|+
T Consensus        68 ~~~~~-~~~v~~~~~~~~a~~~m~~~--~i~~lpVVd~~~~lvGiiT~~Di  115 (120)
T d1jr1a4          68 TKRED-LVVAPAGITLKEANEILQRS--KKGKLPIVNENDELVAIIARTDL  115 (120)
T ss_dssp             SBTTT-SCCEETTCCHHHHHHHTCSC--C---CEEEETTTEEEEEECHHHH
T ss_pred             eeccC-ceEECCCCCHHHHHHHHHHc--CccEEEEEcCCCEEEEEEEHHHh
Confidence            56677 99999999999999999775  55889999999999999998887

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.19  E-value=1.5e-06  Score=69.41  Aligned_cols=108  Identities=7%  Similarity=0.003  Sum_probs=81.1

Q ss_pred             ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC--CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCC
Q 041297          178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE--EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRP  255 (379)
Q Consensus       178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~--dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~p  255 (379)
                      .+++ +..|+.+++..+|++.|++.  ..+++||++.  +|+++|-++-.+|..                   ++..   
T Consensus         7 m~~~-~v~v~~~~tl~ea~~~m~~~--~~~~~~Vv~~d~~~~~iGi~~~~dl~~-------------------~~~~---   61 (131)
T d2riha1           7 LKRP-PVSLPETATIREVATELAKN--RVGLAVLTARDNPKRPVAVVSERDILR-------------------AVAQ---   61 (131)
T ss_dssp             CCSC-CEEEETTCBHHHHHHHHHHH--TCSEEEEEETTEEEEEEEEEEHHHHHH-------------------HHHT---
T ss_pred             ccCC-CEEECCCCcHHHHHHHHHHh--CCCcEEEEEEcCCCEEEEEEeeecccc-------------------cccc---
Confidence            4677 89999999999999999885  5589999954  579999997665532                   1110   


Q ss_pred             hhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHH
Q 041297          256 LKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAV  335 (379)
Q Consensus       256 pe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAV  335 (379)
                                                +.  ...      ..                   ...-...+.+|++..++..+
T Consensus        62 --------------------------~~--~~~------~~-------------------~~~~~~~~~~v~~~~~~~~a   88 (131)
T d2riha1          62 --------------------------RL--DLD------GP-------------------AMPIANSPITVLDTDPVHVA   88 (131)
T ss_dssp             --------------------------TC--CTT------SB-------------------SGGGCBCCCEEETTSBHHHH
T ss_pred             --------------------------cc--ccc------cc-------------------cccccccceeEeeecchHHH
Confidence                                      00  000      00                   00012346789999999999


Q ss_pred             HHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297          336 IMQALARRDRLRSMAKAENPNFCPVRIQ  363 (379)
Q Consensus       336 MaQAlaHRV~~vWVvd~e~~l~~~v~~~  363 (379)
                      +.++..||++++=|||++|.++|+|++.
T Consensus        89 ~~~m~~~~i~~lpVvd~~g~l~Giit~~  116 (131)
T d2riha1          89 AEKMRRHNIRHVVVVNKNGELVGVLSIR  116 (131)
T ss_dssp             HHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             HHHHHHCCeEEEEEEcCCCeEEEEEEHH
Confidence            9999999999999999999999999974

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.18  E-value=1.5e-06  Score=69.58  Aligned_cols=107  Identities=19%  Similarity=0.193  Sum_probs=69.3

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--ccccccC
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCSFAK   92 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~li~~   92 (379)
                      +-+++....|+.+|+..+.+.+...+||-+.+                     ++|+|+|+.-|++....+  +.++..+
T Consensus        10 ~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~---------------------~~~~G~it~~dl~~~~~~~~~~~~~~~   68 (122)
T d2yzqa2          10 NPVTITLPATRNYALELFKKYKVRSFPVVNKE---------------------GKLVGIISVKRILVNPDEEQLAMLVKR   68 (122)
T ss_dssp             SCCCEESSCC------------CCEEEEECTT---------------------CCEEEEEESSCC----------CCCBS
T ss_pred             CCEEECCcCcHHHHHHHHHHcCCcEEEEEecc---------------------ccchhhhhcchhhhhhcccchhhcccc
Confidence            45678889999999999999999999998632                     479999999999876554  6666654


Q ss_pred             CCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhh
Q 041297           93 DSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNF  160 (379)
Q Consensus        93 ~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~  160 (379)
                      .   +.++.|++++.||++.|. +++++++|++...+-.+               .+|+.||++.+++.
T Consensus        69 ~---~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liG---------------iit~~dil~~~~~~  119 (122)
T d2yzqa2          69 D---VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVG---------------ILTVGDIIRRYFAK  119 (122)
T ss_dssp             C---CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEE---------------EEEHHHHHHHTTTT
T ss_pred             c---eeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEE---------------EEEHHHHHHHHHhH
Confidence            3   457999999999999998 69999999875432111               89999999877654

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.17  E-value=1e-06  Score=70.27  Aligned_cols=99  Identities=14%  Similarity=0.141  Sum_probs=80.5

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------c
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------C   86 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------V   86 (379)
                      |-+++....|+.+|+..+.+++...+||-+                      .++++|+++.-||+-++..        |
T Consensus         9 ~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~----------------------~~~~~Gvit~~Di~~~l~~~~~~~~~~v   66 (120)
T d1pbja3           9 DVDTIDITASLEDVLRNYVENAKGSSVVVK----------------------EGVRVGIVTTWDVLEAIAEGDDLAEVKV   66 (120)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHCCCEEEEEE----------------------TTEEEEEEEHHHHHHHHHHTCCTTTSBH
T ss_pred             CCeEECCcCcHHHHHHHHHHcCceEEEEEe----------------------CCcEEEEEEeeeccccccccccccceeE
Confidence            446788899999999999999999999975                      2469999999999876663        5


Q ss_pred             cccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHH
Q 041297           87 FCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIR  155 (379)
Q Consensus        87 S~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvR  155 (379)
                      .++..+   .+..++|++++.||++.|. +|+++++|++++ .-.                 .+|+.||+|
T Consensus        67 ~~~m~~---~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~G-----------------ivt~~Dil~  117 (120)
T d1pbja3          67 WEVMER---DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIG-----------------VISATDILR  117 (120)
T ss_dssp             HHHCBC---GGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEE-----------------EEEHHHHHH
T ss_pred             eeeccc---ccccccchhHHHHHHHHHHHcCCeEEEEEECCEEEE-----------------EEEHHHHHh
Confidence            555543   2568999999999999998 699999987642 122                 899999987

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.15  E-value=2.2e-06  Score=70.73  Aligned_cols=101  Identities=22%  Similarity=0.319  Sum_probs=76.7

Q ss_pred             eEEeCCCCchhHHHHHHhc-C-----ccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCC
Q 041297           97 VRHLKPSASLLEAVDLLLG-G-----VQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQ  170 (379)
Q Consensus        97 l~~V~P~tsLLdAie~m~~-G-----~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~  170 (379)
                      +..+.|++++-||++.|.+ |     ++.+.|++...+-.+               ++|-.|+++.          .+..
T Consensus        11 ~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G---------------~v~~~dl~~~----------~~~~   65 (144)
T d2yvxa2          11 YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKG---------------VLSLRDLIVA----------DPRT   65 (144)
T ss_dssp             CCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCC---------------BCBHHHHTTS----------CTTC
T ss_pred             CEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEec---------------ccchhhhhhc----------cccc
Confidence            6789999999999999974 2     566666654332211               6777787542          2234


Q ss_pred             cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297          171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL  227 (379)
Q Consensus       171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L  227 (379)
                      .+.+  +.+++ +..++++++..+|++.|.+.  +...+||||.+|||+|=|+..|+
T Consensus        66 ~v~~--im~~~-~~~v~~~~~~~~a~~~m~~~--~~~~lPVVd~~g~lvGiIt~~Di  117 (144)
T d2yvxa2          66 RVAE--IMNPK-VVYVRTDTDQEEVARLMADY--DFTVLPVVDEEGRLVGIVTVDDV  117 (144)
T ss_dssp             BSTT--TSBSS-CCCEESSCCHHHHHHHHHHS--CCSEEEEECSSCBEEEEEEHHHH
T ss_pred             chHH--hcccC-CccCCCCChHHHHHHHHHHc--CCCEEEEEeECCEEEEEEEHHHH
Confidence            4444  35677 99999999999999999986  55899999999999999988775

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6.1e-06  Score=68.83  Aligned_cols=118  Identities=13%  Similarity=0.127  Sum_probs=84.2

Q ss_pred             CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcc
Q 041297           94 SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPI  172 (379)
Q Consensus        94 ~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI  172 (379)
                      +.+...+++++++-||+++|. .|.+.+.|+.+.-.+       ....      ++|+.|++++|.............++
T Consensus        16 ~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~-------~lvG------~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1          16 PLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQ-------RLVG------FVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTC-------BEEE------EEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             CceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCC-------eEEE------EEEhHHHHHHHhcccccccccccchh
Confidence            345677899999999999999 799999997532111       0111      89999999999764333332222222


Q ss_pred             cc------------------cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297          173 NS------------------HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN  228 (379)
Q Consensus       173 ~s------------------LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~  228 (379)
                      ..                  -.+.+++ ++.|.+++++.+++++|.+-  ....++|+| +|+++|=|+-.||-
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~im~~~-~~tv~~~~~l~~v~~~~~~~--~~~~l~V~d-~g~lvGiIt~~Dil  152 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPPTLKLRNILDLS-PFTVTDLTPMEIVVDIFRKL--GLRQCLVTH-NGRLLGIITKKDVL  152 (169)
T ss_dssp             EECSSSCCCCCTTCCCCEECGGGEESS-CCEEETTSBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred             hhhcccchhhhhccccccchhhhccCC-CEEECCCCcHHHHHHHHHhc--CceEEEEEE-CCEEEEEEEHHHHH
Confidence            11                  2345677 99999999999999999774  446777665 89999999887763

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.94  E-value=4.1e-07  Score=73.06  Aligned_cols=108  Identities=19%  Similarity=0.094  Sum_probs=49.7

Q ss_pred             cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----cccc
Q 041297           15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----CFCS   89 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----VS~l   89 (379)
                      |-|++....|+.||++.+.+++...+||-+.+..                  ..+++|+|+--||......     +..+
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~------------------~~~lvGivT~~Di~~~~~~~~~~~~~~~   66 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRM------------------GSRLVGIISSRDIDFLKEEEHDRFLEEI   66 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------C------------------TTCCC----------------------C
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeecccc------------------CCeEeeeeeeeeeeehhccccCceeEEE
Confidence            4478899999999999999999999999874322                  4679999999998644432     3333


Q ss_pred             ccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297           90 FAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  156 (379)
Q Consensus        90 i~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF  156 (379)
                      .-.. ..+..+.|++++.||+++|. +++++++|++...+-.+               ++|+.||+|-
T Consensus        67 ~~~~-~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvG---------------iiT~~Di~k~  118 (120)
T d1jr1a4          67 MTKR-EDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVA---------------IIARTDLKKN  118 (120)
T ss_dssp             CSBT-TTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEE---------------EECHHHHHHH
T ss_pred             Eeec-cCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEE---------------EEEHHHhhhc
Confidence            2211 23678999999999999998 69999999865332211               9999999874

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.89  E-value=1.4e-05  Score=64.38  Aligned_cols=106  Identities=11%  Similarity=0.050  Sum_probs=82.4

Q ss_pred             cccccCccccHHHHHHHHHhcC-----CceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc--ccc
Q 041297           15 DEIALGQFIHRCHALLALKRLN-----ESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC--PCF   87 (379)
Q Consensus        15 ~~~~~~~~~tv~dAl~aL~~s~-----~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la--~VS   87 (379)
                      |-+++....|+++|+..|++++     ...+||=+.                     .++++|+++.-|++..--  .|+
T Consensus        10 d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---------------------~~~l~G~v~~~~l~~~~~~~~v~   68 (127)
T d2ouxa2          10 EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---------------------ENHLVGVISLRDLIVNDDDTLIA   68 (127)
T ss_dssp             CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---------------------TCBEEEEEEHHHHTTSCTTSBHH
T ss_pred             CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec---------------------CCeEEEEEEeeccccccccEEhh
Confidence            5688999999999999999875     356666552                     357999999888864322  277


Q ss_pred             ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297           88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  159 (379)
Q Consensus        88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~  159 (379)
                      ++..+.   +..+.|++++.||+++|. ++++++.|++...+-.+               ++|+.||++++.+
T Consensus        69 ~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvG---------------iIt~~Dil~~i~e  123 (127)
T d2ouxa2          69 DILNER---VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLG---------------IVTVDDIIDVIDD  123 (127)
T ss_dssp             HHSBSC---CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEE---------------EEEHHHHHHHHHH
T ss_pred             hhccCC---CccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEE---------------EEEHHHHHHHHHH
Confidence            877642   457999999999999999 69999999875333211               9999999999865