Citrus Sinensis ID: 041458
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 568 | 2.2.26 [Sep-21-2011] | |||||||
| A3KPF8 | 576 | Pentatricopeptide repeat- | yes | no | 0.991 | 0.977 | 0.679 | 0.0 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.859 | 0.816 | 0.398 | 1e-108 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.829 | 0.782 | 0.369 | 2e-92 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.882 | 0.795 | 0.268 | 5e-65 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.830 | 0.749 | 0.279 | 6e-65 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.827 | 0.741 | 0.278 | 4e-64 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.802 | 0.815 | 0.276 | 4e-62 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.825 | 0.745 | 0.279 | 8e-62 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.806 | 0.711 | 0.269 | 3e-61 | |
| Q9FRS4 | 559 | Pentatricopeptide repeat- | no | no | 0.765 | 0.778 | 0.296 | 5e-61 |
| >sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/577 (67%), Positives = 482/577 (83%), Gaps = 14/577 (2%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYGFYSQIPN--LHSFSLNKGFIRVLASTQVTISPKDSV 58
M+TLL+SV ++A+P P RKA GF S IP+ LH S++KG RVLASTQ+T+SPKDS
Sbjct: 1 MSTLLNSVLSMASPESSP-RKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSA 59
Query: 59 YT------KPNRKPGN-NNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKA 111
+T KP+ G+ ++D R + L+D+F LE +V+ GHKP+V +T LLYDLCKA
Sbjct: 60 FTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKA 119
Query: 112 NKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTY 171
N++KKAI+V+E+MVSSGIIPDAS+YTYLVN LCK+GNVGYAMQLVEKMED+GYP+NTVTY
Sbjct: 120 NRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTY 179
Query: 172 NSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231
N+LVRGLCMLG+LNQSLQF++RL+QKGL PNAFTYSFLLEAAYKERG A+KLLD+II
Sbjct: 180 NALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIV 239
Query: 232 KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE 291
KGG+PNLVSYNVLLTG CKEGRT++A+ FR+LP+KGF+ NVVSYNILLR LC +GRWEE
Sbjct: 240 KGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEE 299
Query: 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG--RFRPSAASYNPI 349
AN LLAEMDGGDR+P++VTYNILI SLA+HG+T+ AL+VL EM KG +FR +A SYNP+
Sbjct: 300 ANSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLKEMSKGNHQFRVTATSYNPV 359
Query: 350 IARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLC-GVGKVQEAFAIIQSLGNKQN 408
IARLC EGKVDLVVKCLD+M +RRCKPNEGTYN + LC KVQEAF IIQSL NKQ
Sbjct: 360 IARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQK 419
Query: 409 SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468
+FYK VITSLCRKG T+ AFQLLYEMT+ GF PD++TYS+LIRGLC+EG+ A+E
Sbjct: 420 CCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTGAME 479
Query: 469 IFVVMEEYD-YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527
+ +MEE + KP VDNFNA++LGLCK RRTDL++EVF+MM+EK +MPNETTY ILVEGI
Sbjct: 480 VLSIMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMPNETTYAILVEGI 539
Query: 528 AHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564
AH+DELEL+ EVL EL+LR+V+ ++AV+R+VMQ++ +
Sbjct: 540 AHEDELELAKEVLDELRLRKVIGQNAVDRIVMQFNLD 576
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/494 (39%), Positives = 313/494 (63%), Gaps = 6/494 (1%)
Query: 68 NNNDTRH--RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMV 125
+NN R R +L + F LE MV G+ PD++ T L+ C+ K +KA K++E++
Sbjct: 105 SNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILE 164
Query: 126 SSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLN 185
SG +PD +Y +++ CK G + A+ ++++M + VTYN+++R LC G L
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLK 221
Query: 186 QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLL 245
Q+++ LDR++Q+ P+ TY+ L+EA ++ GV AMKLLD++ +G P++V+YNVL+
Sbjct: 222 QAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLV 281
Query: 246 TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRS 305
G+CKEGR +EAI+F D+PS G +PNV+++NI+LRS+C GRW +A +LLA+M S
Sbjct: 282 NGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341
Query: 306 PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKC 365
P++VT+NILI L G A+ +L++M + +P++ SYNP++ C E K+D ++
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401
Query: 366 LDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCR 424
L++M R C P+ TYN L LC GKV++A I+ L +K S Y VI L +
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461
Query: 425 KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDN 484
GKT +A +LL EM PD+ TYSSL+ GL EG ++EA++ F E +P+
Sbjct: 462 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 521
Query: 485 FNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544
FN+++LGLCKSR+TD +++ MI +G PNET+YTIL+EG+A++ + + E+L EL
Sbjct: 522 FNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELC 581
Query: 545 LRQVVSESAVERLV 558
+ ++ +S+ E++
Sbjct: 582 NKGLMKKSSAEQVA 595
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 273/473 (57%), Gaps = 2/473 (0%)
Query: 86 LERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK 145
LE MV KG+ PDV+ T L+ + KA++VME++ G PD +Y L+N CK
Sbjct: 112 LETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQ-PDVFAYNALINGFCK 170
Query: 146 KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFT 205
+ A +++++M + +TVTYN ++ LC G L+ +L+ L++L+ P T
Sbjct: 171 MNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVIT 230
Query: 206 YSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265
Y+ L+EA E GV A+KL+D+++++G KP++ +YN ++ G+CKEG + A R+L
Sbjct: 231 YTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLE 290
Query: 266 SKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTD 325
KG EP+V+SYNILLR+L +G+WEE +L+ +M P +VTY+ILI +L GK +
Sbjct: 291 LKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIE 350
Query: 326 HALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-L 384
A+ +L M + P A SY+P+IA C EG++D+ ++ L+ M C P+ YN L
Sbjct: 351 EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVL 410
Query: 385 AMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT 444
A LC GK +A I LG S Y + ++L G +A ++ EM G
Sbjct: 411 ATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGID 470
Query: 445 PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEV 504
PD TY+S+I LC EG+++EA E+ V M ++ P V +N +LLG CK+ R + ++ V
Sbjct: 471 PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINV 530
Query: 505 FQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERL 557
+ M+ G PNETTYT+L+EGI + E+ +L +SE + +RL
Sbjct: 531 LESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRL 583
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 146/544 (26%), Positives = 262/544 (48%), Gaps = 43/544 (7%)
Query: 44 VLASTQVTISPKDSVYTKPNRKPGNNNDTRHR-------DHKLNDAFLQLERMVSKGHKP 96
V+ T+SP S + + + D R + + KL+DA MV P
Sbjct: 20 VVRGNAATVSPSFSFFWRRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFP 79
Query: 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLV 156
+++ + LL + K NK I + E M + GI + +Y+ L+NC C++ + A+ ++
Sbjct: 80 SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVL 139
Query: 157 EKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE 216
KM GY N VT +SL+ G C +++++ +D++ G PN T++ L+ +
Sbjct: 140 GKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 199
Query: 217 RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRT---------------------- 254
AM L+D ++AKG +P+LV+Y V++ GLCK G T
Sbjct: 200 NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 259
Query: 255 -------------EEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301
++A+ F+++ +KG PNVV+Y+ L+ LC GRW +A+ LL++M
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319
Query: 302 GDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDL 361
+P + T++ LI + GK A K+ DEMVK PS +Y+ +I C ++D
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379
Query: 362 VVKCLDQMFHRRCKPNEGTYNGLAM-LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420
+ + M + C P+ TYN L C +V+E + + + + Y +I
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439
Query: 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480
L + G A ++ EM G P+ TY++L+ GLC G +E+A+ +F ++ +P
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499
Query: 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
+ +N ++ G+CK+ + + ++F + KG P+ Y ++ G + E + +
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALF 559
Query: 541 KELQ 544
KE++
Sbjct: 560 KEMK 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 142/508 (27%), Positives = 248/508 (48%), Gaps = 36/508 (7%)
Query: 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD 132
R D KL+DA MV P +V+ + LL + K NK I + E M + GI +
Sbjct: 56 RLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHN 115
Query: 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLD 192
+Y+ L+NC C++ + A+ ++ KM GY + VT NSL+ G C ++ ++ +
Sbjct: 116 LYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVG 175
Query: 193 RLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG 252
++++ G P++FT++ L+ ++ A+ L+D ++ KG +P+LV+Y +++ GLCK G
Sbjct: 176 QMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235
Query: 253 RTE-----------------------------------EAIRFFRDLPSKGFEPNVVSYN 277
+ +A+ F ++ +KG PNVV+YN
Sbjct: 236 DIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 295
Query: 278 ILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337
L+R LC GRW +A+ LL++M +P +VT++ LI + GK A K+ DEM+K
Sbjct: 296 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 355
Query: 338 RFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM-LCGVGKVQEA 396
P +Y+ +I C ++D + M + C PN TYN L C +V E
Sbjct: 356 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEG 415
Query: 397 FAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRG 456
+ + + + Y +I + + A + +M G PD TYS L+ G
Sbjct: 416 MELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDG 475
Query: 457 LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN 516
LC G +E AL +F ++ +PD+ +N ++ G+CK+ + + ++F + KG PN
Sbjct: 476 LCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535
Query: 517 ETTYTILVEGIAHQDELELSAEVLKELQ 544
TYT ++ G + E + + +E++
Sbjct: 536 VVTYTTMMSGFCRKGLKEEADALFREMK 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/506 (27%), Positives = 250/506 (49%), Gaps = 36/506 (7%)
Query: 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS 134
D KL+DA MV P +V+ LL + K K I + E M I+
Sbjct: 62 HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLY 121
Query: 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRL 194
+Y L+NC C++ + A+ L+ KM GY + VT +SL+ G C ++ ++ +D++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 195 IQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRT 254
++ G P+ T++ L+ + A+ L+D ++ +G +PNLV+Y V++ GLCK G T
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 255 -----------------------------------EEAIRFFRDLPSKGFEPNVVSYNIL 279
++A+ F+++ +KG PNVV+Y+ L
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301
Query: 280 LRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF 339
+ LC GRW +A++LL++M +P +VT+N LI + GK A K+ D+M+K
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361
Query: 340 RPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM-LCGVGKVQEAFA 398
P +YN ++ C ++D + + M + C P+ TYN L C +V++
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421
Query: 399 IIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLC 458
+ + + ++ Y +I L G A ++ +M G PD TYS L+ GLC
Sbjct: 422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481
Query: 459 MEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNET 518
G +E+ALE+F M++ + K D+ + ++ G+CK+ + D ++F + KG PN
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 541
Query: 519 TYTILVEGIAHQDELELSAEVLKELQ 544
TY ++ G+ + L+ + +LK+++
Sbjct: 542 TYNTMISGLCSKRLLQEAYALLKKMK 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 243/492 (49%), Gaps = 36/492 (7%)
Query: 89 MVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN 148
MV P + + LL + K K I + E M GI + +Y L+NC C++
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSF 208
+ A+ L+ KM GY + VT +SL+ G C ++ ++ +D++++ G P+ T++
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 209 LLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG---------------- 252
L+ + A+ L+D ++ +G +PNLV+Y V++ GLCK G
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180
Query: 253 -------------------RTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEAN 293
++A+ F+++ +KG PNVV+Y+ L+ LC GRW +A+
Sbjct: 181 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 240
Query: 294 ELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARL 353
+LL++M +P +VT+N LI + GK A K+ D+M+K P +YN +I
Sbjct: 241 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF 300
Query: 354 CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM-LCGVGKVQEAFAIIQSLGNKQNSSPQ 412
C ++D + + M + C P+ TYN L C +V++ + + + ++
Sbjct: 301 CMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 360
Query: 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVV 472
Y +I L G A ++ +M G PD TYS L+ GLC G +E+ALE+F
Sbjct: 361 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 420
Query: 473 MEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDE 532
M++ + K D+ + ++ G+CK+ + D ++F + KG PN TY ++ G+ +
Sbjct: 421 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 480
Query: 533 LELSAEVLKELQ 544
L+ + +LK+++
Sbjct: 481 LQEAYALLKKMK 492
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 141/505 (27%), Positives = 243/505 (48%), Gaps = 36/505 (7%)
Query: 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASS 135
D KL+DA MV P +V+ LL + K NK I + E M + I D S
Sbjct: 58 DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 117
Query: 136 YTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLI 195
Y L+NC C++ + A+ ++ KM GY + VT +SL+ G C +++++ +D++
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177
Query: 196 QKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTE 255
PN T++ L+ + A+ L+D ++A+G +P+L +Y ++ GLCK G +
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237
Query: 256 -----------------------------------EAIRFFRDLPSKGFEPNVVSYNILL 280
+A+ F ++ +KG PNVV+YN L+
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297
Query: 281 RSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR 340
R LC GRW +A+ LL++M +P +VT++ LI + GK A K+ DEM+K
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357
Query: 341 PSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM-LCGVGKVQEAFAI 399
P +Y+ +I C ++D + M + C PN TYN L C +V+E +
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417
Query: 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM 459
+ + + Y +I L + G A ++ +M G PD TYS L+ GLC
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 477
Query: 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETT 519
G +E+AL +F +++ +PD+ +N ++ G+CK+ + + ++F + KG PN
Sbjct: 478 YGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 537
Query: 520 YTILVEGIAHQDELELSAEVLKELQ 544
YT ++ G + E + + +E++
Sbjct: 538 YTTMISGFCRKGLKEEADALFREMK 562
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/494 (26%), Positives = 246/494 (49%), Gaps = 36/494 (7%)
Query: 87 ERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKK 146
++M SKG + + ++ C+ K+ A M ++ G PD + L+N LC +
Sbjct: 112 KQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLE 171
Query: 147 GNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTY 206
V A++LV++M + G+ +T N+LV GLC+ G ++ ++ +DR+++ G PN TY
Sbjct: 172 CRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231
Query: 207 SFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS 266
+L K AM+LL + + K + V Y++++ GLCK+G + A F ++
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 291
Query: 267 KGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH 326
KGF+ ++++YN L+ C GRW++ +LL +M SP +VT+++LI S GK
Sbjct: 292 KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351
Query: 327 ALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM 386
A ++L EM++ P+ +YN +I C E +++ ++ +D M + C P+ T+N L
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411
Query: 387 -LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP 445
C ++ + + + + + + Y ++ C+ GK A +L EM P
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471
Query: 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLE-- 503
D +Y L+ GLC G +E+ALEIF +E+ + D+ + ++ G+C + + D + +
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531
Query: 504 ---------------------------------VFQMMIEKGQMPNETTYTILVEGIAHQ 530
+F+ M E+G P+E TY IL+
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD 591
Query: 531 DELELSAEVLKELQ 544
D+ +AE+++E++
Sbjct: 592 DDATTAAELIEEMK 605
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 141/475 (29%), Positives = 234/475 (49%), Gaps = 40/475 (8%)
Query: 69 NNDTRHR---DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMV 125
NN+ H + KL DA +E M P +NL+ L + +++ KA+ ++ +MV
Sbjct: 107 NNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCILRVMV 166
Query: 126 SSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLN 185
SG +PD +Y ++ LCKKG++ A+ L+E M G P + +TYN+++R + GN
Sbjct: 167 MSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDYGNAE 226
Query: 186 QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLL 245
Q+++F +Q G P TY+ L+E + G A+++L+D+ +G P++V+YN L+
Sbjct: 227 QAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLV 286
Query: 246 TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRS 305
C+ G EE + + S G E N V+YN LL SLC W+E E+L M
Sbjct: 287 NYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYC 346
Query: 306 PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKC 365
PT++TYNILI L A+ +M++ + P +YN ++ + EG VD ++
Sbjct: 347 PTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIEL 406
Query: 366 LDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRK 425
L + + C P TYN VI L +K
Sbjct: 407 LGLLKNTCCPPGLITYNS----------------------------------VIDGLAKK 432
Query: 426 GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNF 485
G +A +L ++M G PD T SLI G C L+EEA ++ +
Sbjct: 433 GLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTY 492
Query: 486 NALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
++ GLCK + ++++EV ++M+ G P+ET YT +V+G+ +E+ + +E +
Sbjct: 493 RLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYTAIVKGV---EEMGMGSEAV 544
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 568 | ||||||
| 225462201 | 567 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 1.0 | 0.75 | 0.0 | |
| 255544732 | 567 | pentatricopeptide repeat-containing prot | 0.998 | 1.0 | 0.753 | 0.0 | |
| 307135890 | 566 | pentatricopeptide repeat-containing prot | 0.987 | 0.991 | 0.744 | 0.0 | |
| 449453792 | 566 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.991 | 0.738 | 0.0 | |
| 449504220 | 566 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.991 | 0.737 | 0.0 | |
| 224061569 | 567 | predicted protein [Populus trichocarpa] | 0.998 | 1.0 | 0.734 | 0.0 | |
| 356525788 | 572 | PREDICTED: pentatricopeptide repeat-cont | 0.991 | 0.984 | 0.692 | 0.0 | |
| 30699392 | 576 | pentatricopeptide repeat-containing prot | 0.991 | 0.977 | 0.679 | 0.0 | |
| 297842697 | 580 | pentatricopeptide repeat-containing prot | 0.992 | 0.972 | 0.674 | 0.0 | |
| 3152594 | 566 | Contains repeats similar to RECA protein | 0.973 | 0.977 | 0.680 | 0.0 |
| >gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Vitis vinifera] gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/568 (75%), Positives = 495/568 (87%), Gaps = 1/568 (0%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYGFYSQIPNLHSFSLNKGFIRVLASTQVTISPKDSVYT 60
MA L++++S + +PSPE RK GF+SQ+PNLH+ SLNKGF RVLASTQ+TISPKD+V+T
Sbjct: 1 MAILVNAMSPITSPSPENARKVCGFFSQVPNLHTLSLNKGFSRVLASTQITISPKDNVFT 60
Query: 61 KPNRKPGNNNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKV 120
PN + G N D R RD +LNDAFL LE M+ KGHKPD QAT L+Y+LCK+NKM+KA KV
Sbjct: 61 LPNWRSGKN-DPRTRDLRLNDAFLYLEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKV 119
Query: 121 MEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180
ME+M+ SG PD +S T+LVN LCK+GNVGYAMQLVEKME+YGYPTNTVTYNSLVRGLCM
Sbjct: 120 MELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCM 179
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240
GNL+QSLQ LD+ ++KGLVPN FTYSFLLEAAYKERG A++LLD+I+AKGGKPNLVS
Sbjct: 180 HGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVS 239
Query: 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300
YNVLLTGLCKEGRTEEA++FFRDLPSKGF PNVVSYNILLRSLC EGRWE+A ELLAEMD
Sbjct: 240 YNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMD 299
Query: 301 GGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVD 360
GG+RSP+IVT+NILIGSLA HG+TD AL+VLD+M + RF+ +AASYNPIIARLC EGKVD
Sbjct: 300 GGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVD 359
Query: 361 LVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420
LVVKCLDQM +RRC PNEGTYN +A+LC GKVQEAF+IIQSLGNKQNSS +FYK VI+
Sbjct: 360 LVVKCLDQMMYRRCNPNEGTYNAIAVLCEEGKVQEAFSIIQSLGNKQNSSTHDFYKGVIS 419
Query: 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480
SLCRKG TY AFQLLYEMTKYGF PDSYTYSSLIRGLC EG+++EA+EIF +MEE +P
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRP 479
Query: 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
DVDNFNAL+LGLCK R+TDLSL VF+MM++KG MPNETTYTI+VEGIAHQ+E+EL+A VL
Sbjct: 480 DVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAVL 539
Query: 541 KELQLRQVVSESAVERLVMQYDFEGIEV 568
KEL LRQ V S +ERLVMQYD EG+ +
Sbjct: 540 KELYLRQAVGRSTLERLVMQYDLEGLPI 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/568 (75%), Positives = 493/568 (86%), Gaps = 1/568 (0%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYGFYSQIPNLHSFSLNKGFIRVLASTQVTISPKDSVYT 60
MA+L+ SVS L NP E R A GF+S IPNLHSFSLNK F RVLASTQ+TISPKDSV T
Sbjct: 1 MASLVHSVSPLTNPFTEAARIACGFFSHIPNLHSFSLNKDFTRVLASTQITISPKDSVIT 60
Query: 61 KPNRKPGNNNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKV 120
PN + G N D R+RD +++DAF LE +V GHKPDVVQAT LLYDLCK+NKMKKAI+V
Sbjct: 61 LPNWRSGKN-DQRNRDMRISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRV 119
Query: 121 MEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180
MEMM+S GIIPDA+SYT+LVN LCK+GNVGYAMQLVEKMED GYP NTVTYN+LV+GLCM
Sbjct: 120 MEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCM 179
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240
GNLN+SLQFLDRL+QKGLVPNAFTYS LLEAAYKERGV+ AM+LLD+IIAKGG+PNLVS
Sbjct: 180 HGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVS 239
Query: 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300
YNVLLTGLCKEGR EEAIR F++LPSKGF PNVVSYNILLRSLC EGRWEEANELLAEM+
Sbjct: 240 YNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMN 299
Query: 301 GGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVD 360
G +RSP+IVTYNILIGSLA+HGK + AL+V+DEM+ G F+P+A SYNPIIARLC EGKV+
Sbjct: 300 GRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVE 359
Query: 361 LVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420
VV CLDQM RC PNEGT+N +A+LC GKVQEAF++IQSLGNKQNSS ++YK V++
Sbjct: 360 AVVNCLDQMIFGRCSPNEGTFNAIAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVS 419
Query: 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480
LC+KG TY AF LLYEMTKYGFTPDSYTYSSLIRGLC+EG++ EA+EIF ++EE Y+P
Sbjct: 420 CLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRP 479
Query: 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
D+DNFNAL+LG CKS RTDLSLEVF+MMIEKG P+ETTYTILVEGI H++E EL+AEVL
Sbjct: 480 DIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVL 539
Query: 541 KELQLRQVVSESAVERLVMQYDFEGIEV 568
+EL LRQV+S+S VERL+MQYD EG V
Sbjct: 540 RELHLRQVMSQSTVERLIMQYDLEGAPV 567
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/563 (74%), Positives = 488/563 (86%), Gaps = 2/563 (0%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYGFYSQIPNLHSFSLNKGFIRVLASTQVTISPKDSVYT 60
MATLL++VS + N SPE R+ GF+S IPNL SLNKGF +VLASTQ+TISPKD+++T
Sbjct: 1 MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60
Query: 61 KPNRKPGNNNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKV 120
PN K G + + ++ +L DAF LE MV KG KPDV QAT LLYDLCKA KM+KAIKV
Sbjct: 61 LPNWKTGKV-EQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKV 119
Query: 121 MEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180
MEMM+ SGIIPDASSYT+LV+ LC+KGNVGYAMQLV+KME+YGYPTNTVTYNSLVRGLCM
Sbjct: 120 MEMMIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCM 179
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240
GNL QSLQ LDRLIQKGLVPNA+TYSFLLEAAYKERG A KLLD+IIAKGG+PNLVS
Sbjct: 180 HGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVS 239
Query: 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300
YNVLLTGLCKEGRTE+AIR FR+LPSKGF PNVVSYNILLRSLC EGRWEEAN LLAEM+
Sbjct: 240 YNVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMN 299
Query: 301 GGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVD 360
G +RSP+ VTYNILIGSLA HG+T+HAL+VL+EM++ RF+P+A+SYNPIIA LC +GK+D
Sbjct: 300 GDERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLD 359
Query: 361 LVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420
LVVKCLDQM +R C PNEGTYN +A LC G VQEAF+IIQSLGNKQ+SS QEFYK VIT
Sbjct: 360 LVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVIT 419
Query: 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480
SLCRKG TY AFQLLYEMTKYGFTPDS+TYSSLIRGLCMEG++ EA+EIF VMEE + KP
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEE-NNKP 478
Query: 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
D +N+N+L+LG CKSRRTDL+L+VF++M+ KG +PNETTYTILVEGI H+ E++L+ +VL
Sbjct: 479 DTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVL 538
Query: 541 KELQLRQVVSESAVERLVMQYDF 563
+ELQLR V+S+S +ERLVMQYD
Sbjct: 539 RELQLRDVISQSTLERLVMQYDL 561
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/563 (73%), Positives = 484/563 (85%), Gaps = 2/563 (0%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYGFYSQIPNLHSFSLNKGFIRVLASTQVTISPKDSVYT 60
MATLL++VS + NPSPE R+ GF+S IPN+ SLNKGF +VLASTQ+TISPKD+++T
Sbjct: 1 MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
Query: 61 KPNRKPGNNNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKV 120
PN K G D + ++ +LNDAF LE MV KG KPDV QAT LLYDLCK KM+KAIKV
Sbjct: 61 LPNWKIGKL-DQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKV 119
Query: 121 MEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180
MEMM+ SGIIPDA+SYT+LV+ LC+KGNVGYAMQLV+KME+YGYPTNT TYNSLVRGLCM
Sbjct: 120 MEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCM 179
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240
GNL QSLQ LDRLIQKGLVPNA+TYSFLLEAAYKERG A KLLD+IIAKGGKPNLVS
Sbjct: 180 HGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVS 239
Query: 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300
YNVLLTGLCKEGRTE+A++ FR+LPSKGF PNVVSYNILLRSLC EGRWEEAN LLAEMD
Sbjct: 240 YNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMD 299
Query: 301 GGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVD 360
G +RSP+ VTYNILIGSL HG+T+HAL+VL+EM++ RF+P+A+SYNPIIARLC + KVD
Sbjct: 300 GDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVD 359
Query: 361 LVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420
LVVKCLDQM +R C PNEGTYN +A LC G VQEAF+IIQSLGNKQ+ S QEFYK VIT
Sbjct: 360 LVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVIT 419
Query: 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480
SLCRKG TY AFQLLYEMTKYGFTPDS+TYSSLIRGLCMEG++ EA+EIF VMEE + K
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEE-NIKL 478
Query: 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
D +N+N+L+LG CKSRRTDL+L+VF++M+ KG + NETTYTILVEGI H+ E++L+ EVL
Sbjct: 479 DTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVL 538
Query: 541 KELQLRQVVSESAVERLVMQYDF 563
+ELQLR V+++S VERLVMQYD
Sbjct: 539 RELQLRDVINQSTVERLVMQYDL 561
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/563 (73%), Positives = 484/563 (85%), Gaps = 2/563 (0%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYGFYSQIPNLHSFSLNKGFIRVLASTQVTISPKDSVYT 60
MATLL++VS + NPSPE R+ GF+S IPN+ SLNKGF +VLASTQ+TISPKD+++T
Sbjct: 1 MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
Query: 61 KPNRKPGNNNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKV 120
PN K G D + ++ +LNDAF LE MV KG KPDV QAT LLYDLCK KM+KAIKV
Sbjct: 61 LPNWKIGKL-DQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKV 119
Query: 121 MEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180
MEMM+ SGIIPDA+SYT+LV+ LC+KGNVGYAMQLV+KME+YGYPTNT TYNSLVRGLCM
Sbjct: 120 MEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCM 179
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240
GNL QSLQ LDRLIQKGLVPNA+TYSFLLEAAYKERG A KLLD+IIAKGGKPNLVS
Sbjct: 180 HGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVS 239
Query: 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300
YNVLLTGLCKEGRTE+A++ FR+LPSKGF PNVVSYNILLRSLC EGRWEEAN LLAEMD
Sbjct: 240 YNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMD 299
Query: 301 GGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVD 360
G +RSP+ VTYNILIGSL HG+T+HAL+VL+EM++ RF+P+A+SYNPIIARLC + KVD
Sbjct: 300 GDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVD 359
Query: 361 LVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420
LVVKCLDQM +R C PNEGTYN +A LC G VQEAF+IIQSLGNKQ+ S QEFYK VIT
Sbjct: 360 LVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVIT 419
Query: 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480
SLCRKG TY AFQLLYEMTKYGFTPDS+TYSSLIRGLCMEG++ EA+EIF VMEE + K
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEE-NIKL 478
Query: 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
D +N+N+L+LG CKSRRTDL+L+VF++M+ KG + NETTYTILVEGI H+ E++L+ EVL
Sbjct: 479 DTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVL 538
Query: 541 KELQLRQVVSESAVERLVMQYDF 563
+ELQLR V+++S VERL+MQYD
Sbjct: 539 RELQLRDVINQSTVERLIMQYDL 561
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061569|ref|XP_002300545.1| predicted protein [Populus trichocarpa] gi|222847803|gb|EEE85350.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/568 (73%), Positives = 481/568 (84%), Gaps = 1/568 (0%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYGFYSQIPNLHSFSLNKGFIRVLASTQVTISPKDSVYT 60
MATL++SVS L NPSPE R A G +S +PN SFS NKGF RVLAST +TISPKDSV+T
Sbjct: 1 MATLVNSVSPLTNPSPETLRTACGLFSNVPNFRSFSQNKGFTRVLASTHITISPKDSVWT 60
Query: 61 KPNRKPGNNNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKV 120
N K G DTR+RD +LNDAF LE +V KGHKPDV QAT LLYDLCK+NKMKKA +V
Sbjct: 61 LSNWKVGRK-DTRNRDIRLNDAFFHLEFIVRKGHKPDVAQATQLLYDLCKSNKMKKATRV 119
Query: 121 MEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180
MEM + SGIIPDA+SYT+LVN LCK+GN+GYAMQLVEKME+ G PTNTVTYNSLVRGLC
Sbjct: 120 MEMTIESGIIPDAASYTFLVNNLCKRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCK 179
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240
GNLNQSLQ LD+L++KGLVPN FT+SFLLEAAYKERGV AMKLLD IIAKGGKPNLVS
Sbjct: 180 HGNLNQSLQLLDKLMRKGLVPNEFTHSFLLEAAYKERGVDEAMKLLDGIIAKGGKPNLVS 239
Query: 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300
YNVLLTGLCKEGRTEEAI+FFRDLPSKGF PNVVS NI+LRSLC EGRWEEANEL+AEMD
Sbjct: 240 YNVLLTGLCKEGRTEEAIQFFRDLPSKGFNPNVVSCNIILRSLCCEGRWEEANELVAEMD 299
Query: 301 GGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVD 360
+RSP++VTYNILIGSLA HG+ HA +VLDEM++ F+PSAA++NPII+ LC EGK D
Sbjct: 300 SEERSPSLVTYNILIGSLASHGRIQHAFQVLDEMMRASFQPSAATFNPIISHLCKEGKAD 359
Query: 361 LVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420
LVVKCLDQM H C PN+GT+N +A+LC G+VQ AF+IIQSLGNKQNSS +FY+ VI+
Sbjct: 360 LVVKCLDQMIHHCCNPNDGTFNAIAVLCEGGRVQRAFSIIQSLGNKQNSSTHDFYRGVIS 419
Query: 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480
SLCRKG TY AFQLLYEM + GF PD YTYSSLIRGLC+EG+++EALEIF ++EE DY+P
Sbjct: 420 SLCRKGNTYPAFQLLYEMIQSGFVPDPYTYSSLIRGLCVEGMLDEALEIFRLLEENDYRP 479
Query: 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
+ NFNAL+LG CKS RTDLSLE+F+MMI KG PNETTYTILVEGIAH++E EL+AEVL
Sbjct: 480 ILGNFNALILGFCKSGRTDLSLEIFEMMILKGYTPNETTYTILVEGIAHEEEKELAAEVL 539
Query: 541 KELQLRQVVSESAVERLVMQYDFEGIEV 568
KEL +RQV+ + VERLVMQYD +G+ V
Sbjct: 540 KELYIRQVMRRNTVERLVMQYDLKGLPV 567
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/566 (69%), Positives = 478/566 (84%), Gaps = 3/566 (0%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYG--FYSQIPNLHSFSLNKGFIRVLASTQVTISPKDSV 58
MA+LL++VS AN SP+ R G +SQ PNL +FSLNKGF RV ASTQ+ ISPKD++
Sbjct: 1 MASLLNTVSPAANLSPKTKRPTCGGFLHSQFPNLRTFSLNKGFSRVSASTQIAISPKDTI 60
Query: 59 YTKPNRKPGNNNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAI 118
+ PN + G N D + ++ ++ DAFL LE +V KG KP+V QAT LLYDLCK NK +KA+
Sbjct: 61 FNLPNWRVGRN-DQKGKELRIYDAFLHLEYLVGKGQKPEVNQATQLLYDLCKFNKARKAV 119
Query: 119 KVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178
+VMEMMV SGIIPDA+SYT+LVN LCK+GNVGYA+QLVEKME +G+PTNTVTYN+LV+GL
Sbjct: 120 RVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGL 179
Query: 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNL 238
CM GNLNQSLQ LDRL +KGL+PNAFTYSFLLEAAYKERGV AMKLLDDIIAKGG+PNL
Sbjct: 180 CMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNL 239
Query: 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAE 298
VSYNVLLTGLCKEGRTEEAI+ F++LP KGF P+VVS+NILLRSLC EGRWEEANELLAE
Sbjct: 240 VSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANELLAE 299
Query: 299 MDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358
MD D+ P++VTYNILI SL+ +G+T+ A KVLDEM + F+ SA SYNPIIARLC EGK
Sbjct: 300 MDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGK 359
Query: 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYV 418
VDLV+KCLDQM HRRC PNEGTY+ ++ML GKVQEAF IIQSLG+KQN +FYK +
Sbjct: 360 VDLVLKCLDQMIHRRCHPNEGTYSAISMLSEQGKVQEAFFIIQSLGSKQNFPMHDFYKNL 419
Query: 419 ITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY 478
I SLCRKG TY AFQ+LYEMTKYGFTPDSYTYSSLIRG+C EG+++EAL+IF ++EE D+
Sbjct: 420 IASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDH 479
Query: 479 KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE 538
+PD+DN+NAL+LG CK++RTDLS+E+F MM+ KG +PNE TYTILVEG+A ++E +++A+
Sbjct: 480 RPDIDNYNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIAAD 539
Query: 539 VLKELQLRQVVSESAVERLVMQYDFE 564
++KEL L++V+S+S VERL MQYD +
Sbjct: 540 LMKELYLKKVLSQSTVERLCMQYDIK 565
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30699392|ref|NP_178029.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806390|sp|A3KPF8.1|PP131_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79080, chloroplastic; Flags: Precursor gi|126352286|gb|ABO09888.1| At1g79080 [Arabidopsis thaliana] gi|332198080|gb|AEE36201.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/577 (67%), Positives = 482/577 (83%), Gaps = 14/577 (2%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYGFYSQIPN--LHSFSLNKGFIRVLASTQVTISPKDSV 58
M+TLL+SV ++A+P P RKA GF S IP+ LH S++KG RVLASTQ+T+SPKDS
Sbjct: 1 MSTLLNSVLSMASPESSP-RKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSA 59
Query: 59 YT------KPNRKPGN-NNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKA 111
+T KP+ G+ ++D R + L+D+F LE +V+ GHKP+V +T LLYDLCKA
Sbjct: 60 FTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKA 119
Query: 112 NKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTY 171
N++KKAI+V+E+MVSSGIIPDAS+YTYLVN LCK+GNVGYAMQLVEKMED+GYP+NTVTY
Sbjct: 120 NRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTY 179
Query: 172 NSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231
N+LVRGLCMLG+LNQSLQF++RL+QKGL PNAFTYSFLLEAAYKERG A+KLLD+II
Sbjct: 180 NALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIV 239
Query: 232 KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE 291
KGG+PNLVSYNVLLTG CKEGRT++A+ FR+LP+KGF+ NVVSYNILLR LC +GRWEE
Sbjct: 240 KGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEE 299
Query: 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG--RFRPSAASYNPI 349
AN LLAEMDGGDR+P++VTYNILI SLA+HG+T+ AL+VL EM KG +FR +A SYNP+
Sbjct: 300 ANSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLKEMSKGNHQFRVTATSYNPV 359
Query: 350 IARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLC-GVGKVQEAFAIIQSLGNKQN 408
IARLC EGKVDLVVKCLD+M +RRCKPNEGTYN + LC KVQEAF IIQSL NKQ
Sbjct: 360 IARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQK 419
Query: 409 SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468
+FYK VITSLCRKG T+ AFQLLYEMT+ GF PD++TYS+LIRGLC+EG+ A+E
Sbjct: 420 CCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTGAME 479
Query: 469 IFVVMEEYD-YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527
+ +MEE + KP VDNFNA++LGLCK RRTDL++EVF+MM+EK +MPNETTY ILVEGI
Sbjct: 480 VLSIMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMPNETTYAILVEGI 539
Query: 528 AHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564
AH+DELEL+ EVL EL+LR+V+ ++AV+R+VMQ++ +
Sbjct: 540 AHEDELELAKEVLDELRLRKVIGQNAVDRIVMQFNLD 576
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842697|ref|XP_002889230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335071|gb|EFH65489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/580 (67%), Positives = 483/580 (83%), Gaps = 16/580 (2%)
Query: 1 MATLLSSV-STLANPSPEPF-RKAYGFYSQIPN--LHSFSLNKGFIRVLASTQVTISPKD 56
M+TLL+SV S ANPSPE RK+ GF S IP LH S+NKG RVLASTQ+T+SPKD
Sbjct: 1 MSTLLNSVLSMAANPSPESSPRKSLGFVSHIPTGFLHFSSVNKGVARVLASTQITLSPKD 60
Query: 57 SVYT------KPNRKPGN-NNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLC 109
S +T KP+ G+ ++D R + L+D F LE +V+ GHKP+V +T LLYDLC
Sbjct: 61 SAFTITGSSWKPDLGSGSFSDDPRSDEPSLSDTFSHLECLVTDGHKPNVAHSTQLLYDLC 120
Query: 110 KANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTV 169
KAN++KKAI+V+E+MVSSGIIPDAS+YTYLVN LCK+GNVGYAMQLVEKMED+G+P+NTV
Sbjct: 121 KANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGFPSNTV 180
Query: 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229
TYN+LVRGLCMLG+LNQSLQF++RL+Q+GL PNAFTYSFLLEAAYKERG A+KLLD+I
Sbjct: 181 TYNALVRGLCMLGSLNQSLQFVERLMQRGLAPNAFTYSFLLEAAYKERGTDQAVKLLDEI 240
Query: 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRW 289
IAKGG+PNLVSYNVLLTG CKEGRT++A++ FR+LP KGF+ NVVSYNILLR LC +GRW
Sbjct: 241 IAKGGQPNLVSYNVLLTGFCKEGRTDDAMKLFRELPVKGFKANVVSYNILLRCLCCDGRW 300
Query: 290 EEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG---RFRPSAASY 346
+EAN LLAEMDGGDR+P++VTYNILI SLA+HG+T+ A++VL EM KG +FR +A SY
Sbjct: 301 DEANSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQAMQVLKEMSKGHHHQFRVTATSY 360
Query: 347 NPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLC-GVGKVQEAFAIIQSLGN 405
NP+IARLC EGKVDLVVKCLD+M +RRCKPNEGTY+ + LC GKVQEAF IIQSL N
Sbjct: 361 NPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYSAIGALCEHNGKVQEAFYIIQSLSN 420
Query: 406 KQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEE 465
KQ +FYK VITS+CRKG T+ AFQLLYEMT+ GF PD++TYS+LIRGLC+EG+
Sbjct: 421 KQKCCTHDFYKSVITSMCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFIG 480
Query: 466 ALEIFVVMEEYDY-KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILV 524
A+E+ +MEE +Y KP VDNFNA++LGLCK RRTDL+LEVF+MM+ K +MPNETTY I+V
Sbjct: 481 AMEVLSIMEESEYHKPTVDNFNAMILGLCKIRRTDLALEVFEMMVGKKRMPNETTYAIIV 540
Query: 525 EGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564
EGIAH+DELEL+ EVL+EL+ R+V+ ++AV+R+VMQ++ +
Sbjct: 541 EGIAHEDELELAKEVLEELRSRKVIGQNAVDRIVMQFNLD 580
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3152594|gb|AAC17075.1| Contains repeats similar to RECA protein gb|L26100 from Acinetobacter calcoaceticus [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/567 (68%), Positives = 473/567 (83%), Gaps = 14/567 (2%)
Query: 11 LANPSPEPFRKAYGFYSQIPN--LHSFSLNKGFIRVLASTQVTISPKDSVYT------KP 62
+A+P P RKA GF S IP+ LH S++KG RVLASTQ+T+SPKDS +T KP
Sbjct: 1 MASPESSP-RKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSAFTITGSSWKP 59
Query: 63 NRKPGN-NNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVM 121
+ G+ ++D R + L+D+F LE +V+ GHKP+V +T LLYDLCKAN++KKAI+V+
Sbjct: 60 DLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKANRLKKAIRVI 119
Query: 122 EMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCML 181
E+MVSSGIIPDAS+YTYLVN LCK+GNVGYAMQLVEKMED+GYP+NTVTYN+LVRGLCML
Sbjct: 120 ELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALVRGLCML 179
Query: 182 GNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSY 241
G+LNQSLQF++RL+QKGL PNAFTYSFLLEAAYKERG A+KLLD+II KGG+PNLVSY
Sbjct: 180 GSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIVKGGEPNLVSY 239
Query: 242 NVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301
NVLLTG CKEGRT++A+ FR+LP+KGF+ NVVSYNILLR LC +GRWEEAN LLAEMDG
Sbjct: 240 NVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANSLLAEMDG 299
Query: 302 GDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG--RFRPSAASYNPIIARLCSEGKV 359
GDR+P++VTYNILI SLA+HG+T+ AL+VL EM KG +FR +A SYNP+IARLC EGKV
Sbjct: 300 GDRAPSVVTYNILINSLAFHGRTEQALQVLKEMSKGNHQFRVTATSYNPVIARLCKEGKV 359
Query: 360 DLVVKCLDQMFHRRCKPNEGTYNGLAMLC-GVGKVQEAFAIIQSLGNKQNSSPQEFYKYV 418
DLVVKCLD+M +RRCKPNEGTYN + LC KVQEAF IIQSL NKQ +FYK V
Sbjct: 360 DLVVKCLDEMIYRRCKPNEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSV 419
Query: 419 ITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD- 477
ITSLCRKG T+ AFQLLYEMT+ GF PD++TYS+LIRGLC+EG+ A+E+ +MEE +
Sbjct: 420 ITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEESEN 479
Query: 478 YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSA 537
KP VDNFNA++LGLCK RRTDL++EVF+MM+EK +MPNETTY ILVEGIAH+DELEL+
Sbjct: 480 CKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDELELAK 539
Query: 538 EVLKELQLRQVVSESAVERLVMQYDFE 564
EVL EL+LR+V+ ++AV+R+VMQ++ +
Sbjct: 540 EVLDELRLRKVIGQNAVDRIVMQFNLD 566
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 568 | ||||||
| TAIR|locus:2207415 | 576 | AT1G79080 [Arabidopsis thalian | 0.991 | 0.977 | 0.679 | 5.7e-210 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.857 | 0.814 | 0.399 | 1e-100 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.829 | 0.782 | 0.369 | 3.7e-87 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.785 | 0.597 | 0.296 | 1.5e-60 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.813 | 0.725 | 0.292 | 1.5e-60 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.797 | 0.703 | 0.281 | 3.9e-60 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.799 | 0.621 | 0.319 | 3.9e-60 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.813 | 0.743 | 0.288 | 1e-59 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.889 | 0.801 | 0.278 | 1.3e-59 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.820 | 0.740 | 0.288 | 5.7e-59 |
| TAIR|locus:2207415 AT1G79080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2030 (719.7 bits), Expect = 5.7e-210, P = 5.7e-210
Identities = 392/577 (67%), Positives = 482/577 (83%)
Query: 1 MATLLSSVSTLANPSPEPFRKAYGFYSQIPN--LHSFSLNKGFIRVLASTQVTISPKDSV 58
M+TLL+SV ++A+P P RKA GF S IP+ LH S++KG RVLASTQ+T+SPKDS
Sbjct: 1 MSTLLNSVLSMASPESSP-RKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSA 59
Query: 59 YT------KPNRKPGN-NNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKA 111
+T KP+ G+ ++D R + L+D+F LE +V+ GHKP+V +T LLYDLCKA
Sbjct: 60 FTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKA 119
Query: 112 NKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTY 171
N++KKAI+V+E+MVSSGIIPDAS+YTYLVN LCK+GNVGYAMQLVEKMED+GYP+NTVTY
Sbjct: 120 NRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTY 179
Query: 172 NSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231
N+LVRGLCMLG+LNQSLQF++RL+QKGL PNAFTYSFLLEAAYKERG A+KLLD+II
Sbjct: 180 NALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIV 239
Query: 232 KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE 291
KGG+PNLVSYNVLLTG CKEGRT++A+ FR+LP+KGF+ NVVSYNILLR LC +GRWEE
Sbjct: 240 KGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEE 299
Query: 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG--RFRPSAASYNPI 349
AN LLAEMDGGDR+P++VTYNILI SLA+HG+T+ AL+VL EM KG +FR +A SYNP+
Sbjct: 300 ANSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLKEMSKGNHQFRVTATSYNPV 359
Query: 350 IARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVG-KVQEAFAIIQSLGNKQN 408
IARLC EGKVDLVVKCLD+M +RRCKPNEGTYN + LC KVQEAF IIQSL NKQ
Sbjct: 360 IARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQK 419
Query: 409 SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468
+FYK VITSLCRKG T+ AFQLLYEMT+ GF PD++TYS+LIRGLC+EG+ A+E
Sbjct: 420 CCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTGAME 479
Query: 469 IFVVMEEYDY-KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527
+ +MEE + KP VDNFNA++LGLCK RRTDL++EVF+MM+EK +MPNETTY ILVEGI
Sbjct: 480 VLSIMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMPNETTYAILVEGI 539
Query: 528 AHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564
AH+DELEL+ EVL EL+LR+V+ ++AV+R+VMQ++ +
Sbjct: 540 AHEDELELAKEVLDELRLRKVIGQNAVDRIVMQFNLD 576
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
Identities = 197/493 (39%), Positives = 313/493 (63%)
Query: 68 NNNDTRH--RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMV 125
+NN R R +L + F LE MV G+ PD++ T L+ C+ K +KA K++E++
Sbjct: 105 SNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILE 164
Query: 126 SSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLN 185
SG +PD +Y +++ CK G + A+ ++++M + VTYN+++R LC G L
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLK 221
Query: 186 QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLL 245
Q+++ LDR++Q+ P+ TY+ L+EA ++ GV AMKLLD++ +G P++V+YNVL+
Sbjct: 222 QAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLV 281
Query: 246 TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRS 305
G+CKEGR +EAI+F D+PS G +PNV+++NI+LRS+C GRW +A +LLA+M S
Sbjct: 282 NGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341
Query: 306 PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKC 365
P++VT+NILI L G A+ +L++M + +P++ SYNP++ C E K+D ++
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401
Query: 366 LDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCR 424
L++M R C P+ TYN L LC GKV++A I+ L +K S Y VI L +
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461
Query: 425 KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDN 484
GKT +A +LL EM PD+ TYSSL+ GL EG ++EA++ F E +P+
Sbjct: 462 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 521
Query: 485 FNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544
FN+++LGLCKSR+TD +++ MI +G PNET+YTIL+EG+A++ + + E+L EL
Sbjct: 522 FNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELC 581
Query: 545 LRQVVSESAVERL 557
+ ++ +S+ E++
Sbjct: 582 NKGLMKKSSAEQV 594
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 175/473 (36%), Positives = 273/473 (57%)
Query: 86 LERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK 145
LE MV KG+ PDV+ T L+ + KA++VME++ G PD +Y L+N CK
Sbjct: 112 LETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQ-PDVFAYNALINGFCK 170
Query: 146 KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFT 205
+ A +++++M + +TVTYN ++ LC G L+ +L+ L++L+ P T
Sbjct: 171 MNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVIT 230
Query: 206 YSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265
Y+ L+EA E GV A+KL+D+++++G KP++ +YN ++ G+CKEG + A R+L
Sbjct: 231 YTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLE 290
Query: 266 SKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTD 325
KG EP+V+SYNILLR+L +G+WEE +L+ +M P +VTY+ILI +L GK +
Sbjct: 291 LKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIE 350
Query: 326 HALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-L 384
A+ +L M + P A SY+P+IA C EG++D+ ++ L+ M C P+ YN L
Sbjct: 351 EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVL 410
Query: 385 AMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT 444
A LC GK +A I LG S Y + ++L G +A ++ EM G
Sbjct: 411 ATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGID 470
Query: 445 PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEV 504
PD TY+S+I LC EG+++EA E+ V M ++ P V +N +LLG CK+ R + ++ V
Sbjct: 471 PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINV 530
Query: 505 FQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERL 557
+ M+ G PNETTYT+L+EGI + E+ +L +SE + +RL
Sbjct: 531 LESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRL 583
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 135/455 (29%), Positives = 244/455 (53%)
Query: 97 DVVQATNLLYDLC-----KANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK-KGNVG 150
D+ +T+ ++DL + + + KA+ ++ + + G +P SY +++ + K N+
Sbjct: 128 DLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNIS 187
Query: 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLL 210
+A + ++M + N TYN L+RG C GN++ +L D++ KG +PN TY+ L+
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI 247
Query: 211 EAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE 270
+ K R + KLL + KG +PNL+SYNV++ GLC+EGR +E ++ +G+
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307
Query: 271 PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKV 330
+ V+YN L++ C EG + +A + AEM +P+++TY LI S+ G + A++
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367
Query: 331 LDEM-VKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM-LC 388
LD+M V+G P+ +Y ++ +G ++ + L +M P+ TYN L C
Sbjct: 368 LDQMRVRG-LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHC 426
Query: 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSY 448
GK+++A A+++ + K S Y V++ CR +A ++ EM + G PD+
Sbjct: 427 VTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486
Query: 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMM 508
TYSSLI+G C + +EA +++ M PD + AL+ C + +L++ M
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546
Query: 509 IEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543
+EKG +P+ TY++L+ G+ Q + +L +L
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 136/465 (29%), Positives = 238/465 (51%)
Query: 78 KLNDAFLQL-ERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSY 136
K D L L ++M KG ++ + ++ C+ K+ A M ++ G P+ ++
Sbjct: 102 KQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITF 161
Query: 137 TYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQ 196
+ L+N LC +G V A++LV++M + G+ + +T N+LV GLC+ G +++ +D++++
Sbjct: 162 STLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVE 221
Query: 197 KGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256
G PNA TY +L K AM+LL + + K + V Y++++ GLCK G +
Sbjct: 222 YGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDN 281
Query: 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIG 316
A F ++ KG N+++YNIL+ C GRW++ +LL +M +P +VT+++LI
Sbjct: 282 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 341
Query: 317 SLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKP 376
S GK A ++ EM+ P +Y +I C E +D + +D M + C P
Sbjct: 342 SFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 377 NEGTYNGLAM-LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLL 435
N T+N L C ++ + + + + + + Y +I C GK A +L
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 436 YEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS 495
EM P+ TY L+ GLC G E+ALEIF +E+ + D+ +N ++ G+C +
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNA 521
Query: 496 RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
+ D + ++F + KG P TY I++ G+ + L AE+L
Sbjct: 522 SKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS-EAELL 565
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 128/455 (28%), Positives = 238/455 (52%)
Query: 87 ERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKK 146
++M SKG + + ++ C+ K+ A M ++ G PD + L+N LC +
Sbjct: 112 KQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLE 171
Query: 147 GNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTY 206
V A++LV++M + G+ +T N+LV GLC+ G ++ ++ +DR+++ G PN TY
Sbjct: 172 CRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231
Query: 207 SFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS 266
+L K AM+LL + + K + V Y++++ GLCK+G + A F ++
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 291
Query: 267 KGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH 326
KGF+ ++++YN L+ C GRW++ +LL +M SP +VT+++LI S GK
Sbjct: 292 KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351
Query: 327 ALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM 386
A ++L EM++ P+ +YN +I C E +++ ++ +D M + C P+ T+N L
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411
Query: 387 -LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP 445
C ++ + + + + + + Y ++ C+ GK A +L EM P
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471
Query: 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVF 505
D +Y L+ GLC G +E+ALEIF +E+ + D+ + ++ G+C + + D + ++F
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531
Query: 506 QMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
+ KG + Y I++ + +D L A++L
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLS-KADIL 565
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 147/460 (31%), Positives = 236/460 (51%)
Query: 77 HKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSY 136
+++N+A LE M G PD +++ LCK +++ +A K++ M+ G PD +Y
Sbjct: 266 NRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITY 325
Query: 137 TYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFL-DRLI 195
YL+N LCK G V A L ++ P V +N+L+ G G L+ + L D +
Sbjct: 326 GYLMNGLCKIGRVDAAKDLFYRIPK---P-EIVIFNTLIHGFVTHGRLDDAKAVLSDMVT 381
Query: 196 QKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTE 255
G+VP+ TY+ L+ +KE V A+++L D+ KG KPN+ SY +L+ G CK G+ +
Sbjct: 382 SYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKID 441
Query: 256 EAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILI 315
EA ++ + G +PN V +N L+ + C E R EA E+ EM P + T+N LI
Sbjct: 442 EAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLI 501
Query: 316 GSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCK 375
L + HAL +L +M+ + +YN +I G++ K +++M +
Sbjct: 502 SGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSP 561
Query: 376 PNEGTYNGLAM-LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQL 434
+E TYN L LC G+V +A ++ + + ++ +I LCR G +A +
Sbjct: 562 LDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEF 621
Query: 435 LYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494
EM G TPD T++SLI GLC G IE+ L +F ++ PD FN L+ LCK
Sbjct: 622 QKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCK 681
Query: 495 SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELE 534
+ + IE G +PN T++IL++ I Q+ L+
Sbjct: 682 GGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLD 721
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 134/465 (28%), Positives = 237/465 (50%)
Query: 78 KLNDAFLQL-ERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSY 136
K D L L ++M KG ++ + ++ C+ K+ A M ++ G PD ++
Sbjct: 86 KQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTF 145
Query: 137 TYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQ 196
+ L+N LC +G V A++LV++M + G+ +T N+LV GLC+ G ++ ++ +DR+++
Sbjct: 146 STLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVE 205
Query: 197 KGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256
G PN TY +L+ K AM+LL + + K + V Y++++ GLCK+G +
Sbjct: 206 TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265
Query: 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIG 316
A F ++ KGF+ +++ Y L+R C GRW++ +LL +M +P +V ++ LI
Sbjct: 266 AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALID 325
Query: 317 SLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKP 376
GK A ++ EM++ P +Y +I C E ++D LD M + C P
Sbjct: 326 CFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGP 385
Query: 377 NEGTYNGLAM-LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLL 435
N T+N L C + + + + + + + Y +I C GK A +L
Sbjct: 386 NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELF 445
Query: 436 YEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS 495
EM PD +Y L+ GLC G E+ALEIF +E+ + D+ +N ++ G+C +
Sbjct: 446 QEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNA 505
Query: 496 RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540
+ D + ++F + KG P+ TY I++ G+ + L A++L
Sbjct: 506 SKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLS-EADLL 549
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 143/513 (27%), Positives = 253/513 (49%)
Query: 44 VLASTQVTISPKDSVYTKPNRKPGNNNDTRHR-------DHKLNDAFLQLERMVSKGHKP 96
V+ T+SP S + + + D R + + KL+DA MV P
Sbjct: 20 VVRGNAATVSPSFSFFWRRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFP 79
Query: 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLV 156
+++ + LL + K NK I + E M + GI + +Y+ L+NC C++ + A+ ++
Sbjct: 80 SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVL 139
Query: 157 EKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE 216
KM GY N VT +SL+ G C +++++ +D++ G PN T++ L+ +
Sbjct: 140 GKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 199
Query: 217 RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSY 276
AM L+D ++AKG +P+LV+Y V++ GLCK G T+ A + EP V+ Y
Sbjct: 200 NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 259
Query: 277 NILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336
N ++ LC ++A L EM+ P +VTY+ LI L +G+ A ++L +M++
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319
Query: 337 GRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM-LCGVGKVQE 395
+ P +++ +I EGK+ K D+M R P+ TY+ L C ++ E
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379
Query: 396 AFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIR 455
A + + + +K Y +I C+ + + ++ EM++ G ++ TY+ LI+
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439
Query: 456 GLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515
GL G + A EIF M P++ +N LL GLCK+ + + ++ VF+ + P
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499
Query: 516 NETTYTILVEGIAHQDELELSAEVLKELQLRQV 548
TY I++EG+ ++E ++ L L+ V
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 136/472 (28%), Positives = 241/472 (51%)
Query: 78 KLN--DAFLQL-ERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS 134
K+N D + L ERM + D+ L+ C+ +++ A+ V+ M+ G PD
Sbjct: 92 KMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIV 151
Query: 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRL 194
+ + L+N C + A+ LV++M Y NTVT+N+L+ GL + ++++ +DR+
Sbjct: 152 TLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 211
Query: 195 IQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG-KPNLVSYNVLLTGLCKEGR 253
+ +G P+ FTY ++ K + A+ LL + KG + ++V Y ++ LC
Sbjct: 212 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYTTIIDALCNYKN 270
Query: 254 TEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNI 313
+A+ F ++ +KG PNVV+YN L+R LC GRW +A+ LL++M +P +VT++
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330
Query: 314 LIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373
LI + GK A K+ DEM+K P +Y+ +I C ++D + M +
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 374 CKPNEGTYNGLAM-LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAF 432
C PN TYN L C +V+E + + + + Y +I L + G A
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450
Query: 433 QLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492
++ +M G PD TYS L+ GLC G +E+AL +F +++ +PD+ +N ++ G+
Sbjct: 451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Query: 493 CKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544
CK+ + + ++F + KG PN YT ++ G + E + + +E++
Sbjct: 511 CKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A3KPF8 | PP131_ARATH | No assigned EC number | 0.6793 | 0.9911 | 0.9774 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 568 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-24
Identities = 85/379 (22%), Positives = 164/379 (43%), Gaps = 40/379 (10%)
Query: 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229
T+N L+ +++ +L+ L + + GL + Y+ L+ K V A ++ ++
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRW 289
+ G + N+ ++ L+ G + G+ +A + + SK +P+ V +N L+ + G
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 290 EEANELLAEMDGGDR--SPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYN 347
+ A ++LAEM P +T L+ + A G+ D A +V + + + + Y
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618
Query: 348 PIIARLCSE-GKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCG-VGKVQEAFAIIQSLGN 405
I CS+ G D + D M + KP+E ++ L + G G + +AF I+Q
Sbjct: 619 -IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ---- 673
Query: 406 KQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEE 465
+ K G + +YSSL+ ++
Sbjct: 674 -------------------------------DARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 466 ALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525
ALE++ ++ +P V NAL+ LC+ + +LEV M G PN TY+IL+
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 526 GIAHQDELELSAEVLKELQ 544
+D+ ++ ++L + +
Sbjct: 763 ASERKDDADVGLDLLSQAK 781
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 9e-22
Identities = 71/289 (24%), Positives = 125/289 (43%), Gaps = 17/289 (5%)
Query: 89 MVSKGHKPDVVQATNLLYDLC-KANKMKKAIKVMEMMVSSG--IIPDASSYTYLVNCLCK 145
M SK KPD V N L C ++ + +A V+ M + I PD + L+
Sbjct: 533 MRSKNVKPDRV-VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 146 KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFT 205
G V A ++ + + +Y Y V G+ + +L D + +KG+ P+
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 206 YSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265
+S L++ A + A ++L D +G K VSY+ L+ ++A+ + D+
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 266 SKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTD 325
S P V + N L+ +LC + +A E+L+EM P +TY+IL+ + D
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 326 HALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRC 374
L +L + + +P N ++ R C + CL + F + C
Sbjct: 772 VGLDLLSQAKEDGIKP-----NLVMCR-C------ITGLCL-RRFEKAC 807
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 4e-18
Identities = 75/397 (18%), Positives = 161/397 (40%), Gaps = 38/397 (9%)
Query: 103 NLLYDLCKANK-MKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMED 161
N+L +C +++ + A++V+ ++ +G+ D YT L++ K G V ++ +M +
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500
Query: 162 YGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHA 221
G N T+ +L+ G G + ++ + K + P+ ++ L+ A + V
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560
Query: 222 AMKLLDDIIAKGG--KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNIL 279
A +L ++ A+ P+ ++ L+ G+ + A ++ + + Y I
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620
Query: 280 LRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF 339
+ S +G W+ A + +M P V ++ L+ + G D A ++L + K
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680
Query: 340 RPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAI 399
+ SY+ ++ + ++ + + + +P T N L
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL--------------- 725
Query: 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM 459
IT+LC + +A ++L EM + G P++ TYS L+
Sbjct: 726 -------------------ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
Query: 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR 496
+ + L++ +E KP++ + GLC R
Sbjct: 767 KDDADVGLDLLSQAKEDGIKPNLVMCRC-ITGLCLRR 802
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 4e-17
Identities = 22/49 (44%), Positives = 37/49 (75%)
Query: 236 PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLC 284
P++V+YN L+ G CK+G+ EEA++ F ++ +G +PNV +Y+IL+ LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 6e-14
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 271 PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLA 319
P+VV+YN L+ C +G+ EEA +L EM P + TY+ILI L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-14
Identities = 75/327 (22%), Positives = 128/327 (39%), Gaps = 33/327 (10%)
Query: 205 TYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264
TY L+EA + + + + + G +P+ N +L K G +A R F ++
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 265 PSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM--DGGDRSPTIVTYNILIGS---LA 319
P + N+ S+ ++ L G + EA L EM DG D P + + A
Sbjct: 185 PER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 320 YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR---CKP 376
G+ H + +V F S +D+ KC D R P
Sbjct: 241 RAGQQLHCCVLKTGVVGDTF--------------VSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 377 NEGTYNGLAMLCGV---GKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQ 433
+ T +ML G G +EA + + + S Q + +I R A Q
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 434 LLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493
+ + GF D ++L+ G +E+A +F M + ++ ++NAL+ G
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402
Query: 494 KSRRTDLSLEVFQMMIEKGQMPNETTY 520
R ++E+F+ MI +G PN T+
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 84/382 (21%), Positives = 159/382 (41%), Gaps = 45/382 (11%)
Query: 90 VSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149
V G DV +L+ +A KV M + DA S+T +++ K G
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLP 370
Query: 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL 209
A++ ME + +T S++ LG+L+ ++ + +KGL+ + L
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 210 LEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF 269
+E K + + A+++ +I K +++S+ ++ GL R EA+ FFR +
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L 485
Query: 270 EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALK 329
+PN V+ L + G E+ A ++L + + G +AL
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHA--------------HVLRTGIGFDGFLPNAL- 530
Query: 330 VLDEMVK-GRFRPS----------AASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNE 378
LD V+ GR + S+N ++ + GK + V+ ++M P+E
Sbjct: 531 -LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 379 GTYNGLAMLCGVGK---VQEAFAIIQSLGNKQNSSPQ-EFYKYVITSLCRKGKTYQAFQL 434
T+ +++LC + V + S+ K + +P + Y V+ L R GK +A+
Sbjct: 590 VTF--ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
Query: 435 LYEMTKYGFTPDSYTYSSLIRG 456
+ +M TPD + +L+
Sbjct: 648 INKMP---ITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 79/378 (20%), Positives = 157/378 (41%), Gaps = 23/378 (6%)
Query: 117 AIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176
V + SSG PD ++ K G + A +L ++M + N ++ +++
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIG 197
Query: 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP 236
GL GN ++ + + G T+ +L A+ A +L ++ G
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 237 NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELL 296
+ L+ K G E+A F +P K V++N +L + G EEA L
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLY 313
Query: 297 AEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSE 356
EM S T++I+I + +HA + +++ F + ++
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373
Query: 357 GKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGV---GKVQEAFAIIQSLGNKQNSSPQE 413
G+++ D+M + N ++N A++ G G+ +A + + + + +P
Sbjct: 374 GRMEDARNVFDRMPRK----NLISWN--ALIAGYGNHGRGTKAVEMFERM-IAEGVAPNH 426
Query: 414 FYKYVITSLCR-KGKTYQAFQLLYEMTK-YGFTPDSYTYSSLIRGLCMEGLIEEALEIFV 471
+ S CR G + Q +++ M++ + P + Y+ +I L EGL++EA +
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YA 483
Query: 472 VMEEYDYKPDVDNFNALL 489
++ +KP V+ + ALL
Sbjct: 484 MIRRAPFKPTVNMWAALL 501
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 7e-12
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 445 PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494
PD TY++LI G C +G +EEAL++F M++ KP+V ++ L+ GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 6e-11
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 418 VITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLC 458
+I C+KGK +A +L EM K G P+ YTYS LI GLC
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 131 PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLC 179
PD +Y L++ CKKG V A++L +M+ G N TY+ L+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 3e-10
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 201 PNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK 250
P+ TY+ L++ K+ V A+KL +++ +G KPN+ +Y++L+ GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 3e-10
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 306 PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLC 354
P +VTYN LI GK + ALK+ +EM K +P+ +Y+ +I LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 85/431 (19%), Positives = 162/431 (37%), Gaps = 72/431 (16%)
Query: 172 NSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKL---LDD 228
NS +R LC G L Q+L+ L+ + + + + Y L +R V ++
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 229 ----------------------------IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRF 260
+ K + +L S+NVL+ G K G +EA+
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 261 FRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320
+ + G P+V ++ +LR+ E+ A + + N LI
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 321 HGKTDHALKVLDEMVKGRFRPSAASYNPIIA-----RLCSEGKVDLVVKCLDQMFHRRCK 375
G A V D M R S+N +I+ C EG ++ M
Sbjct: 235 CGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEG-----LELFFTMRELSVD 285
Query: 376 PNEGTYNGLAMLCGV------GK------VQEAFAIIQSLGNKQNSSPQEFYKYVITSLC 423
P+ T + C + G+ V+ FA+ S+ N S + Y +
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN----SLIQMYLSL----- 336
Query: 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVD 483
G +A ++ M T D+ +++++I G GL ++ALE + +ME+ + PD
Sbjct: 337 --GSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543
++L D+ +++ ++ KG + L+E + ++ + EV +
Sbjct: 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450
Query: 544 QLRQVVSESAV 554
+ V+S +++
Sbjct: 451 PEKDVISWTSI 461
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 6e-10
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK 145
PDVV L+ CK K+++A+K+ M GI P+ +Y+ L++ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 6e-10
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 480 PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529
PDV +N L+ G CK + + +L++F M ++G PN TY+IL++G+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 9e-10
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 167 NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEA 212
+ VTYN+L+ G C G + ++L+ + + ++G+ PN +TYS L++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 2e-09
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 267 KGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299
KG +P+VV+YN L+ LC GR +EA ELL EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 63/314 (20%), Positives = 125/314 (39%), Gaps = 49/314 (15%)
Query: 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKG-FEPNVVSYNILLRSLCMEGRWEEANELLAEM 299
YN LL ++GR ++ I D+ +G + + + + ++ + +EA +
Sbjct: 377 YNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 300 DGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGR-FRPSAASYNPIIARLCSEGK 358
R+PT+ T+N+L+ A D AL+VL +V+ + Y +I+ GK
Sbjct: 433 ----RNPTLSTFNMLMSVCASSQDIDGALRVL-RLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCG-VGKVQEAFAIIQSLGNKQNSSPQEFYKY 417
VD + + +M + + N T+ L C G+V +AF + +K + +
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 418 VITSLCRKGKTYQAFQLLYEMT--KYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475
+I++ + G +AF +L EM + PD T +L++ G ++ A E
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE------- 600
Query: 476 YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELEL 535
V+QM+ E YTI V + + + +
Sbjct: 601 ----------------------------VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 536 SAEVLKELQLRQVV 549
+ + +++ + V
Sbjct: 633 ALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 36/174 (20%)
Query: 78 KLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYT 137
L+ AF L+ +G K V ++L+ A KKA+++ E + S + P S+
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 138 YLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK 197
L+ LC+ + A++++ +M+ G NT+TY+
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS------------------------- 758
Query: 198 GLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251
LL A+ ++ + LL G KPNLV +TGLC
Sbjct: 759 ----------ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC-ITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 3e-08
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 232 KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRD 263
KG KP++V+YN L+ GLC+ GR +EA+ +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 3e-08
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 442 GFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME 474
G PD TY++LI GLC G ++EA+E+ ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 9e-08
Identities = 99/553 (17%), Positives = 193/553 (34%), Gaps = 147/553 (26%)
Query: 105 LYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLC-------------------- 144
L LC ++++A+K++E M + D +Y L LC
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSH 116
Query: 145 ----------------KKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSL 188
+ G + +A + KM + + ++N LV G G +++L
Sbjct: 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEAL 172
Query: 189 QFLDRLIQKGLVPNAFTYSFLLEAA------YKERGVHA------------AMKLLDDII 230
R++ G+ P+ +T+ +L + R VHA + L +
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 231 AKGG-------------KPNLVSYNVLLTGLCKEGRTEEAIRFF---------------- 261
K G + + +S+N +++G + G E + F
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 262 ---------------RDLPS----KGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGG 302
R++ GF +V N L++ G W EA ++ + M+
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 303 DRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLV 362
D V++ +I +G D AL+ M + P + +++ G +D+
Sbjct: 353 D----AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408
Query: 363 VKCLDQMFHRRCKPNEGTYNGL-AMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITS 421
VK + + N L M + +A + ++ K S + +I
Sbjct: 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS----WTSIIAG 464
Query: 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTYSS---------------------LIRGLCME 460
L + ++A +M P+S T + L G+ +
Sbjct: 465 LRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523
Query: 461 GLIEEAL-EIFVVMEEYDY--------KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511
G + AL +++V +Y + DV ++N LL G + +++E+F M+E
Sbjct: 524 GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 512 GQMPNETTYTILV 524
G P+E T+ L+
Sbjct: 584 GVNPDEVTFISLL 596
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 341 PSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGL 384
P +YN +I C +GKV+ +K ++M R KPN TY+ L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 98/463 (21%), Positives = 179/463 (38%), Gaps = 77/463 (16%)
Query: 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVE 157
V+ A LL D +M +V +G D S L+ G+ G A ++
Sbjct: 294 VISACELLGDERLGREMHG------YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 158 KMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKER 217
+ME + V++ +++ G G +++L+ + Q + P+ T + +L A
Sbjct: 348 RME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403
Query: 218 GVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYN 277
+ +KL + KG +V N L+ K ++A+ F ++P K +V+S+
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWT 459
Query: 278 ILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLA--------YHGKTDHALK 329
++ L + R EA +M P VT LI +L+ GK HA
Sbjct: 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVT---LIAALSACARIGALMCGKEIHAHV 515
Query: 330 VLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCG 389
+ + F P+A +DL V+C
Sbjct: 516 LRTGIGFDGFLPNAL--------------LDLYVRC------------------------ 537
Query: 390 VGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYT 449
G++ A+ Q ++++ + ++T GK A +L M + G PD T
Sbjct: 538 -GRMNYAWN--QFNSHEKDVVS---WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 450 YSSLIRGLCMEGLIEEALEIFVVMEE-YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMM 508
+ SL+ G++ + LE F MEE Y P++ ++ ++ L ++ + + M
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
Query: 509 IEKGQMPNETTYTILVEG--IAHQDEL-ELSAEVLKELQLRQV 548
P+ + L+ I EL EL+A+ + EL V
Sbjct: 652 PIT---PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-07
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNV 273
V+YN L+ GLCK GR EEA+ F+++ +G EP+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 127 SGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKME 160
G+ PD +Y L++ LC+ G V A++L+++ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDV 482
TY++LI GLC G +EEALE+F M+E +PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 51/253 (20%), Positives = 93/253 (36%), Gaps = 56/253 (22%)
Query: 89 MVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN 148
++ G D+V T L+ K +M+ A V + M +I
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI------------------ 392
Query: 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSF 208
++N+L+ G G ++++ +R+I +G+ PN T+
Sbjct: 393 ---------------------SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 209 LLEA----AYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264
+L A E+G + ++ KP + Y ++ L +EG +EA R
Sbjct: 432 VLSACRYSGLSEQGWEIFQSMSEN---HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488
Query: 265 PSKGFEPNVVSYNILLRSLCMEGRWEEAN---ELLAEMDGGDRSPTIVTYNILIGSLAYH 321
P F+P V + LL + + E E L M + +V N+ S
Sbjct: 489 P---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS---- 541
Query: 322 GKTDHALKVLDEM 334
G+ A KV++ +
Sbjct: 542 GRQAEAAKVVETL 554
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 8e-06
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 305 SPTIVTYNILIGSLAYHGKTDHALKVLDEMV 335
P +VTYN LI L G+ D A+++LDEM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA 343
VTYN LI L G+ + AL++ EM + P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF 269
V+YN L++G CK G+ EEA+ F+++ KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-05
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 448 YTYSSLIRGLCMEGLIEEALEIFVVMEE 475
TY+SLI G C G +EEALE+F M+E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (103), Expect = 8e-05
Identities = 49/261 (18%), Positives = 104/261 (39%), Gaps = 5/261 (1%)
Query: 112 NKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTV-T 170
+ A+ ++ ++ + + + L G + A++L+E+ + ++
Sbjct: 2 KDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGL 61
Query: 171 YNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHA-AMKLLDDI 229
L L LG L ++L+ L++ ++ L+PN L + G + A++LL+
Sbjct: 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP--SKGFEPNVVSYNILLRSLCMEG 287
+A P+L + L L + G EEA+ + + L L G
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 288 RWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYN 347
R+EEA ELL + + L GK + AL+ ++ ++ +A +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE-LDPDNAEALY 240
Query: 348 PIIARLCSEGKVDLVVKCLDQ 368
+ L G+ + ++ L++
Sbjct: 241 NLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-05
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 169 VTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA 203
VTYN+L+ GLC G + ++L+ + ++G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 309 VTYNILIGSLAYHGKTDHALKVLDEMVK 336
VTYN LI GK + AL++ EM +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 13/201 (6%)
Query: 115 KKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSL 174
++A+ + M SG+ D +++ ++ + + +A Q + G+P + V +L
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 175 VRGLCMLGNLNQSLQFLDRLIQKGLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG 233
V G + + DR+ +K L+ NA + RG A+++ + +IA+G
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY----GNHGRGTK-AVEMFERMIAEG 421
Query: 234 GKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP-SKGFEPNVVSYNILLRSLCMEGRWEEA 292
PN V++ +L+ G +E+ F+ + + +P + Y ++ L EG +EA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 293 NELLAEMDGGDRSPTIVTYNI 313
++ R+P T N+
Sbjct: 482 YAMIR------RAPFKPTVNM 496
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 342 SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQ 401
S N + LCS G+++ +K L+ M R +E Y L LC + E + +
Sbjct: 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVC 109
Query: 402 SLGNKQNSS-PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME 460
S + S +++ R G+ A+ + +M + D ++++ L+ G
Sbjct: 110 SRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKA 165
Query: 461 GLIEEALEIFVVMEEYDYKPDVDNFNALL 489
G +EAL ++ M +PDV F +L
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVL 194
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 163 GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDR 193
G + VTYN+L+ GLC G ++++++ LD
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 274 VSYNILLRSLCMEGRWEEANELLAEM 299
V+YN L+ LC GR EEA EL EM
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 274 VSYNILLRSLCMEGRWEEANELLAEM 299
V+YN L+ C G+ EEA EL EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 58/283 (20%), Positives = 108/283 (38%), Gaps = 48/283 (16%)
Query: 89 MVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCL----- 143
M PD + ++L + +K+ E+ G+I SY + N L
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI----SYVVVANALIEMYS 435
Query: 144 -CKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPN 202
CK + A+++ + + + +++ S++ GL + ++L F +++ L PN
Sbjct: 436 KCKC--IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPN 488
Query: 203 AFTYSFLLEAAY--------KERGVHAAM----------KLLDDIIAKGGKPN------- 237
+ T L A KE H L D+ + G+ N
Sbjct: 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548
Query: 238 -----LVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292
+VS+N+LLTG G+ A+ F + G P+ V++ LL + G +
Sbjct: 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608
Query: 293 NELLAEM-DGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEM 334
E M + +P + Y ++ L GK A +++M
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 92 KGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMV 125
KG KPDVV L+ LC+A ++ +A+++++ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 345 SYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNE 378
+YN +I LC G+V+ ++ +M R +P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 108 LCKANKMKKAIKVMEMMVSSGIIPDA 133
LCKA ++++A+++ + M GI PD
Sbjct: 10 LCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 485 FNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515
+NALLL L K+ DL+L V + M G P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 568 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.44 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.41 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.35 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.23 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.13 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.02 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.99 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.98 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.95 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.87 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.87 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.83 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.77 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.57 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.55 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.44 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.44 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.39 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.39 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.34 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.31 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.25 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.04 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.84 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.8 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.8 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.78 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.76 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.65 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.62 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.61 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.59 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.54 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.49 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.46 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.44 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.44 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.39 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.36 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.25 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.25 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.24 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.24 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.24 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.22 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.2 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.07 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.03 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.97 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.96 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.85 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.79 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.79 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.76 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.73 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.66 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.64 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.59 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.57 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.42 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.33 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.29 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.29 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.21 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.04 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.0 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.96 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.87 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.64 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.54 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.52 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.43 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.43 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.35 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.33 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.31 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.31 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.28 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.23 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.99 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.93 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.93 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.93 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.81 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.73 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.66 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.61 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.37 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.32 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.18 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.05 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.05 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.88 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.25 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.25 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.13 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.09 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.09 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.06 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.05 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.83 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.83 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.58 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.47 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.31 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.18 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.1 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.03 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.0 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.81 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.78 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.71 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.56 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.23 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.84 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.72 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.44 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.23 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.86 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.76 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.07 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.94 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.56 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 87.94 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.7 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.46 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.45 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.44 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.3 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.26 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.2 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.11 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.8 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.65 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.42 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.36 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.48 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.9 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.59 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.02 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 83.64 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.49 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 83.42 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.35 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.18 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.15 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.15 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.32 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.83 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 81.74 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 81.31 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.1 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.05 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.46 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-70 Score=564.27 Aligned_cols=488 Identities=17% Similarity=0.315 Sum_probs=448.8
Q ss_pred chhhccCChHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGH-KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
..+.+.|++++|+++|++|.+.|+ .++...++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|++
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCH
Confidence 345678999999999999999885 56778888899999999999999999998874 8999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
+.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh--CCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS--KGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT 307 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 307 (568)
...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++|.+.++.|+
T Consensus 534 ~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999976 67899999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAM 386 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~ 386 (568)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+. +..
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 889
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 466 (568)
|++.|++++|.++|++|...+..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|
T Consensus 694 y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHc----c-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCK----S-------------------RRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
.++|+.|.+.|+.||..+|++++..|.+ + +..++|..+|++|.+.|+.||..||..+
T Consensus 774 ~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 774 LDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 9999999999999999999999876432 1 2246799999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhh
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQYD 562 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~ 562 (568)
+.++.+.+..+.+..+++.|...+.. +..++..++..++
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 98777888888888888887766555 5667777777664
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=560.58 Aligned_cols=477 Identities=16% Similarity=0.267 Sum_probs=455.6
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 346788999999999999853 8999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H--cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 231 A--KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 231 ~--~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 7 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAML 387 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~ 387 (568)
.+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...++.|+..+|+. +..|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c---
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM----E--- 460 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~--- 460 (568)
++.|++++|.++|++|...+..||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|.+ +
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999976542 1
Q ss_pred ----------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041458 461 ----------------GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILV 524 (568)
Q Consensus 461 ----------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 524 (568)
+..++|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++++
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li 889 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH
Confidence 2246899999999999999999999999999999999999999999999888899999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCHHH
Q 041458 525 EGIAHQDELELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 553 (568)
+++.+. .++|..++++|.+.|..|.-.
T Consensus 890 ~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 890 DGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 998443 468999999999999986543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-67 Score=553.10 Aligned_cols=476 Identities=15% Similarity=0.215 Sum_probs=444.6
Q ss_pred CchhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 70 NDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
++.|++.|++++|..+|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 467888999999999999983 5788899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
+.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 568899999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV 309 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (568)
.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874 5788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLC 388 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~ 388 (568)
+|+.++.+|++.|+.++|.++|++|.. +++||..+|+.++.+|++.|+.+.+.+++..+.+.|..++..+++. +.+|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 999999999999999999999999986 5889999999999999999999999999999999999999999988 88999
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 468 (568)
++|++++|..+|+.+ .+|..+||.+|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 536 k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 999999999999987 469999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 469 IFVVME-EYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 469 ~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
+|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. ++||..+|.+|+.+|..+|+.+.|+...+++.+..
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 999999 78999999999999999999999999999999995 79999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhhcCC
Q 041458 548 VVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 548 ~~~~~~~~~l~~~~~~~g~ 566 (568)
+.+...+..+...|...|.
T Consensus 688 p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGK 706 (857)
T ss_pred CCCcchHHHHHHHHHHCCC
Confidence 9999999999999988875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=550.28 Aligned_cols=478 Identities=17% Similarity=0.202 Sum_probs=374.6
Q ss_pred CchhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 70 NDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
+.+|++.|++++|+.+|++|...|+.||..+|+.++.+|++.+++..+.+++..+.+.|+.||..+++.||.+|++.|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+
T Consensus 239 ~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 239 VSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred HHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999999874 6888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV 309 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (568)
.+.|..||..+||.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~ 390 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce
Confidence 9999999999999999999999999999999999863 588899999999999999999999999998888899999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLC 388 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~ 388 (568)
||+.++.+|++.|++++|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+. +..|+
T Consensus 391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~ 466 (857)
T PLN03077 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLR 466 (857)
T ss_pred eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 99999999999999999999999998888888888889999999988888888888888753 56677777 67888
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 468 (568)
+.|+.++|..+|++|.. +..||..+|+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+.+|++.|++++|.+
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence 88888888888888865 46777777777777777777777777766666666665555555555555555555555554
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HcC
Q 041458 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ-LRQ 547 (568)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~ 547 (568)
+|+.+ .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++++|.++|++|. +.+
T Consensus 546 ~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 546 QFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 44443 234445555555555555555555555555544455555555555555555555555555555554 233
Q ss_pred CC-CHHHHHHHHHhhhhcC
Q 041458 548 VV-SESAVERLVMQYDFEG 565 (568)
Q Consensus 548 ~~-~~~~~~~l~~~~~~~g 565 (568)
.. +...+..++..|+..|
T Consensus 621 i~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred CCCchHHHHHHHHHHHhCC
Confidence 33 2234444444444444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=522.85 Aligned_cols=462 Identities=18% Similarity=0.237 Sum_probs=440.3
Q ss_pred chhhccCChHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKG-HKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
..+.+.|++++|+.+|++|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 56788999999999999998764 68999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
++|.++|++|.+ ||..+||+++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|..+.+.+++..+
T Consensus 175 ~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 175 IDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred HHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999975 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV 309 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (568)
.+.|..||..+|+.|+.+|++.|++++|.++|++|.. +|..+||+++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999975 499999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLC 388 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~ 388 (568)
||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+. +..|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 478899999 88999
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTK-YGFTPDSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
+.|+.++|.++|++|.+.+..||..+|+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 699999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+ +.| +..+|..+++.|.+.|++++|.+++++|.+.
T Consensus 483 ~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 483 AMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 998765 5789999999999999999999999999999975 455 4679999999999999999999999999999
Q ss_pred CCC
Q 041458 547 QVV 549 (568)
Q Consensus 547 ~~~ 549 (568)
|..
T Consensus 558 g~~ 560 (697)
T PLN03081 558 GLS 560 (697)
T ss_pred CCc
Confidence 864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=522.70 Aligned_cols=458 Identities=15% Similarity=0.205 Sum_probs=440.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHH
Q 041458 94 HKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSG-IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYN 172 (568)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (568)
...+..+|+.++..+.+.|++++|+++|++|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999865 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 041458 173 SLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG 252 (568)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 252 (568)
.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999996 57999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHH
Q 041458 253 RTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLD 332 (568)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (568)
..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 4589999999999999999999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 041458 333 EMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSP 411 (568)
Q Consensus 333 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (568)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++. +.+|+++|++++|.++|++|.+ +|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999975 58
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME-EYDYKPDVDNFNALLL 490 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 490 (568)
..+||.||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 899999999999999999999999999999999999999999999999999999999999998 4799999999999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (568)
+|++.|++++|.+++++| ++.|+..+|+.|+.+|..+|+++.|.++++++.+.++.+...+..++..|+..|.
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 999999999999999876 4789999999999999999999999999999999999888899999999998885
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-30 Score=279.36 Aligned_cols=482 Identities=13% Similarity=0.043 Sum_probs=297.3
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC----------------------
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGI---------------------- 129 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------------- 129 (568)
.+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++.+.+...
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHH
Confidence 4455666666666666665543 22444555555555556666666666555554431
Q ss_pred -----------CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 130 -----------IPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG 198 (568)
Q Consensus 130 -----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 198 (568)
+.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1233444445555555555555555555544431 2234444445555555555555555555554432
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHH
Q 041458 199 LVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNI 278 (568)
Q Consensus 199 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 278 (568)
+.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..
T Consensus 530 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 606 (899)
T TIGR02917 530 -PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLM 606 (899)
T ss_pred -cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 2244455555555555555555555555554442 2234445555555666666666666666655432 234555666
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
+..+|...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+... .+..++..+...+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence 6666666666666666666665443 33455566666666666666666666666665432 244556666666666666
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM 438 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (568)
+++|.++++.+....+............+...|++++|...|+.+....+.+ ..+..++..+.+.|+.++|.+.++++
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666665543333332333556667777777777777776654433 45566677777777777777777777
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 041458 439 TKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNET 518 (568)
Q Consensus 439 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 518 (568)
.+.. +.+...+..+...|...|+.++|.++|+++.+..+ .+...++.+...+...|+ ++|+.+++++.+. .+.+..
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~ 838 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPA 838 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcH
Confidence 7653 33566777777778888888888888888876543 367777788888888888 7788888887764 233556
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCC
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (568)
++..+...+...|++++|.++++++++.++.++.+...++..|+..|.
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 777788888888999999999999999998888888888888888775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-30 Score=278.19 Aligned_cols=482 Identities=14% Similarity=0.063 Sum_probs=270.1
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++++|...++.+.... +.+...+..+...+.+.|++++|.++|+++.+... .+...+..+...+...|+++
T Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 337 SIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChH
Confidence 45678999999999999998764 45788899999999999999999999999988653 35667777888888888888
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|.+.++.+.+.. +.+......++..+.+.|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.
T Consensus 415 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 415 EAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888888877653 223344455566666666666666666666554 23355566666666666666666666666665
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhh
Q 041458 231 AKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVT 310 (568)
Q Consensus 231 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 310 (568)
+.. +.+...+..+...+...|++++|.+.|+++.+... .+..++..+...+.+.|+.++|..+++++...+ +.+...
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 569 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEP 569 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhH
Confidence 542 22344455555556666666666666666554422 244455555555555555555555555554433 233444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhC
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGV 390 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (568)
+..++..|...|++++|.++++.+.+.. +.+...|..+...+.+.|++++|...++++.+..+............+...
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4455555555555555555555554432 223444555555555555555555555555443322222222223444445
Q ss_pred CCHHHHHHHHHHHhhCCCC---------------------------------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNS---------------------------------SPQEFYKYVITSLCRKGKTYQAFQLLYE 437 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 437 (568)
|++++|...|+++....+. .+...+..+...+...|++++|.+.|++
T Consensus 649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555554443222 1333344444444455555555555554
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 438 MTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 438 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
+.+. .|+..++..++.++.+.|++++|.+.++.+.+.... +...+..+...|...|+.++|.++|+++.+.. +++.
T Consensus 729 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 804 (899)
T TIGR02917 729 ALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNA 804 (899)
T ss_pred HHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCH
Confidence 4443 223334444444555555555555555554443222 44444555555555555555555555555432 3344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 518 TTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
.++..+...+...|+ .+|..+++++.+..+.++.....+...+...|
T Consensus 805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 805 VVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 445555555555555 44555555555555554444444444444333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-22 Score=221.45 Aligned_cols=481 Identities=12% Similarity=0.032 Sum_probs=321.0
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVV-QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
.+.+.|++++|+..|+.+.+.++ |+.. ............|+.++|++.++++.+..+ .+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHH
Confidence 35678999999999999887643 3322 111111222345889999999999988753 25667788888888899999
Q ss_pred hHHHHHHHHHhCCC----------------C--Cc-HHHH----------------------------------HHHHHH
Q 041458 151 YAMQLVEKMEDYGY----------------P--TN-TVTY----------------------------------NSLVRG 177 (568)
Q Consensus 151 ~a~~~~~~~~~~~~----------------~--~~-~~~~----------------------------------~~li~~ 177 (568)
+|++.++++.+... + +. ...+ ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999888754310 0 00 0000 011334
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhhHH------------HH
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP-NLVSYN------------VL 244 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l 244 (568)
+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++.++..... ....|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 566788899999998888763 2367788888888889999999999998888763321 111121 22
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHH---------
Q 041458 245 LTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILI--------- 315 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------- 315 (568)
...+.+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..+.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence 3456788889999999988887633 255667778888888999999999988887653 22333333333
Q ss_pred ---------------------------------HHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 041458 316 ---------------------------------GSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLV 362 (568)
Q Consensus 316 ---------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 362 (568)
..+...|++++|++.|++.++..+. +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 3344556677777777766665322 444555666667777777777
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChh---------hHHHHHHHHHhcCChhHHHH
Q 041458 363 VKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQE---------FYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~ 433 (568)
...++++.+..+......+.....+...++.++|...++.+......++.. .+......+...|+.++|+.
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 777777666543333333333444555666777776666654322111111 12234556677788888887
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 041458 434 LLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 513 (568)
+++. .+++...+..+...+.+.|++++|.+.|+...+..+. +...+..++..|...|+.++|.+.++...+. -
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT-A 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-C
Confidence 7762 2345566778888899999999999999999876544 7788889999999999999999999988764 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH------HHHHHHHHhhhhcC
Q 041458 514 MPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE------SAVERLVMQYDFEG 565 (568)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g 565 (568)
+.+..++..+..++...|++++|.+++++++...+.++ .....+...+...|
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 23556677778888899999999999999988766532 23334455555544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-22 Score=214.88 Aligned_cols=481 Identities=13% Similarity=0.051 Sum_probs=313.6
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhH----------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQA----------------TNLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS- 134 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~- 134 (568)
.+.+.|+.++|.+.++++.+..+. +...+ ..+...+.+.|++++|++.|+.+.+.+. |+..
T Consensus 71 ~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~l 148 (1157)
T PRK11447 71 LLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDL 148 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHH
Confidence 446789999999999999887532 33322 3334567899999999999999987643 3322
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---------------
Q 041458 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL--------------- 199 (568)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------- 199 (568)
....+.......|+.++|++.++++.+. .|.+...+..+...+...|+.++|++.++++.+...
T Consensus 149 a~~y~~~~~~~~g~~~~A~~~L~~ll~~-~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 149 AVEYWRLVAKLPAQRPEAINQLQRLNAD-YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHHhhCCccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 1212222233568999999999999986 355778889999999999999999999998865321
Q ss_pred ---C--------------CCHhhH----H-----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 041458 200 ---V--------------PNAFTY----S-----------------FLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSY 241 (568)
Q Consensus 200 ---~--------------~~~~~~----~-----------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (568)
. |+.... . .....+...|++++|...|++.++.. +.+...+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~ 306 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEAL 306 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 0 110000 0 11234566788999999999988763 3367788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCC-ChhHH------------HHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 242 NVLLTGLCKEGRTEEAIRFFRDLPSKGFEP-NVVSY------------NILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 242 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
..+...+.+.|++++|+..|++..+..... +...| ......+.+.|++++|...|+++.... +.+.
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 385 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS 385 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 888889999999999999999887653321 11112 122345678899999999999988764 4466
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH-----------------------------------
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARL----------------------------------- 353 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----------------------------------- 353 (568)
..+..+...+...|++++|++.|+++.+.... +...+..+...+
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~ 464 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL 464 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 77778888999999999999999998875422 333343333333
Q ss_pred -------HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041458 354 -------CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKG 426 (568)
Q Consensus 354 -------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 426 (568)
...|++++|++.+++.++..+......+.....+...|++++|...++++....+. +...+..+...+...+
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCC
Confidence 23444444444444444443222222222244444455555555555544433222 1222222222333444
Q ss_pred ChhHHHHHHHHHHHCCCCCCh---------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 041458 427 KTYQAFQLLYEMTKYGFTPDS---------YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 497 (568)
+.++|+..++.+......++. ..+..+...+...|+.++|.++++. .+.+...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 455555444443221111110 0112334556666777777776651 23356677788889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
+++|++.+++.++.. +.+...+..+...+...|++++|.+.++++.+..+.+......+...+...|
T Consensus 619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 999999999999852 4467888889999999999999999999999888888887777777776555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-22 Score=184.02 Aligned_cols=440 Identities=14% Similarity=0.107 Sum_probs=350.2
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 152 (568)
..+.|++++|.+.-...-+. .+.+....-.+-..+.+..+.+...+--....+... .-..+|..+.+.+-..|++++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHhchHHHH
Confidence 35689999998765544333 233444444455666677777776665555555432 3577899999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSF-LLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +-......|++++|...+.+.++
T Consensus 136 l~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 136 LALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 99999999863 346889999999999999999999999998875 555444333 33445567999999999998887
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhh
Q 041458 232 KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVT 310 (568)
Q Consensus 232 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 310 (568)
... -=.+.|+.|...+-..|+...|++.|++..+. +|+ ...|-.|...|...+.+++|...+.+..... +.....
T Consensus 213 ~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 213 TQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred hCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 622 23567899999999999999999999998875 443 4578888889999999999999998887653 345677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhC
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGV 390 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (568)
+..+...|..+|..+-|+..|++.++..+. -+..|+.|..++...|++.+|...+.+.+...+......++....+...
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 888888899999999999999999886432 3467999999999999999999999999998888788888889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEI 469 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 469 (568)
|.+++|..+|....+..+. -....+.|...|-+.|++++|+..+++.++ ++|+ ...|+.+...|-..|+++.|...
T Consensus 368 ~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred ccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 9999999999988876443 235678889999999999999999999886 5776 56889999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE-TTYTILVEGIA 528 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 528 (568)
+.+....++. -.+.++.|...|-..|++.+|++-+++.++ ++||. ..+..++.+..
T Consensus 445 y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 445 YTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 9998876433 467888999999999999999999999998 46653 55555555443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-21 Score=180.28 Aligned_cols=446 Identities=15% Similarity=0.074 Sum_probs=360.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
...|..-..+.|++++|.+.-...-.++. .+......+-..+.+..+++....--....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 45566777889999999988776666542 23344444445677777777665544444443 34457889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHhcCChHHHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYN-VLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~ 259 (568)
.|++++|+..++.+++.... ....|..+..++...|+.+.|...|.+.++. .|+..... .+....-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999987432 6788999999999999999999999998876 45544433 33444556899999999
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 260 FFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF 339 (568)
Q Consensus 260 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (568)
.|.+...... --...|+.|...+-.+|+...|++.|++..+.+ +.=...|..|...|...+.+++|...|.+......
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 9988876522 135678999999999999999999999998764 22356889999999999999999999998887532
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041458 340 RPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVI 419 (568)
Q Consensus 340 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 419 (568)
. ....+..+...|...|..|.|+..+++.++..+.....--+....+-..|++.+|...+.+.....+. -....+.|.
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLg 361 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLG 361 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHH
Confidence 2 44566667778899999999999999999987666666666678888899999999999998776443 446678899
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCC
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD-VDNFNALLLGLCKSRR 497 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 497 (568)
..|...|.+++|..+|....+. .|. ...++.|...|-.+|++++|...+++..+- .|+ ...|+.+...|-..|+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhh
Confidence 9999999999999999998874 454 567899999999999999999999998864 555 5689999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 498 TDLSLEVFQMMIEKGQMPN-ETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
.+.|.+.+.+++.. .|. ....+.|...|..+|++.+|++-++..++..+..+++..+++...
T Consensus 438 v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 99999999999974 564 578889999999999999999999999999999888877776653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-18 Score=181.89 Aligned_cols=471 Identities=14% Similarity=0.039 Sum_probs=247.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
..|++++|+..|+..++..+. +...+..+...|.+.|+.++|+..+++..+... -|...+..+ ..+ ++.++|.+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhHHH
Confidence 458888999999988887544 577888888888999999999999988887642 233333333 222 77788888
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHH--------HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH-HHHHHHcCCHHHHHHH
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRG--------LCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL-LEAAYKERGVHAAMKL 225 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~ 225 (568)
+++++.+.. |-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.+++++|+++
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 888887652 2334444444433 3333 33333333 2222222233333333 5555566666666666
Q ss_pred HHHHHHcCC------------------------------CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CChh
Q 041458 226 LDDIIAKGG------------------------------KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE-PNVV 274 (568)
Q Consensus 226 ~~~~~~~~~------------------------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~ 274 (568)
+.++.+.+. +.+...+..+...|.+.|+.++|.++++++...-.. |...
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 655555432 124444445555566666666666666655433111 2222
Q ss_pred HHH------------------------------HHHHHHHcC--------------------------------------
Q 041458 275 SYN------------------------------ILLRSLCME-------------------------------------- 286 (568)
Q Consensus 275 ~~~------------------------------~l~~~~~~~-------------------------------------- 286 (568)
+|- .++..+.+.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 220 001111111
Q ss_pred -------------------------CCHHHHHHHHHHhccC--CCCcCHhhHHHHHHHHHhcCC---hHHHHHH------
Q 041458 287 -------------------------GRWEEANELLAEMDGG--DRSPTIVTYNILIGSLAYHGK---TDHALKV------ 330 (568)
Q Consensus 287 -------------------------g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~---~~~a~~~------ 330 (568)
|+.++|..+++..... +...+......++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 2222222222222210 000111112233333333322 1111111
Q ss_pred ----------------HHHHHHC-CC-CC--CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHh
Q 041458 331 ----------------LDEMVKG-RF-RP--SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCG 389 (568)
Q Consensus 331 ----------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 389 (568)
++..... +. ++ +...|..+..++.. ++.++|...+.+..... |+...... ...+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQ 521 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence 0000000 00 11 33344445555544 66777777666666553 33222111 333456
Q ss_pred CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 041458 390 VGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 468 (568)
.|++++|...|+++....+ +...+..+...+.+.|+.++|...+++..+.. |+ ...+..+.......|++++|..
T Consensus 522 ~Gr~eeAi~~~rka~~~~p--~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 522 VEDYATALAAWQKISLHDM--SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred CCCHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777776654422 22334455566666777777777777666543 22 2222233333344577777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
.+++..+. .|+...|..+..++.+.|+.++|.+.+++..+.. +.+...+..+..++...|+.++|...+++.++..|
T Consensus 598 ~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77766654 3455666666667777777777777777766641 23455555666666667777777777777777777
Q ss_pred CCHHHHHHHHHhhhhcCC
Q 041458 549 VSESAVERLVMQYDFEGI 566 (568)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~ 566 (568)
.+......+...+...|.
T Consensus 675 ~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDD 692 (987)
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 766666666666665553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-19 Score=181.05 Aligned_cols=434 Identities=13% Similarity=0.030 Sum_probs=246.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLC 179 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 179 (568)
.+......+.+.|+++.|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.. +.+..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556777888999999999999998875 4677888899999999999999999999998863 446778999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 259 (568)
..|++++|+.-|......+...+.. ...++..+.. ..+........+.. +++...+..+.. |......+....
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 9999999998887765542221221 1112211111 12222222222221 112222222221 211111111111
Q ss_pred HHHHhhhCCCCCCh-hHHHHHHHH---HHcCCCHHHHHHHHHHhccCC-C-CcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 260 FFRDLPSKGFEPNV-VSYNILLRS---LCMEGRWEEANELLAEMDGGD-R-SPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 260 ~~~~~~~~~~~p~~-~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
-+....+. .+.. ..+..+... ....+++++|.+.|++....+ . +.....+..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111110 0110 011111100 122356666777776665543 1 22344556666666667777777777776
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChh
Q 041458 334 MVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQE 413 (568)
Q Consensus 334 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 413 (568)
.++.... ....|..+...+...|++++|...++++++..+......+.....+...|++++|...|++.....+. +..
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~ 434 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIF 434 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHH
Confidence 6654321 23455556666666777777777777666654333333333355666667777777777766665433 344
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVD------NFNA 487 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~ 487 (568)
.+..+...+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++..+.....+.. .++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 55566666667777777777777666542 2235566666677777777777777777666542221111 1111
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
....+...|++++|.+++++..+.+ +.+...+..+...+...|++++|.+++++..+....
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 1222233567777777777766542 223445666667777777777777777776665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-21 Score=184.96 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHH
Q 041458 276 YNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA----ASYNPIIA 351 (568)
Q Consensus 276 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~ 351 (568)
+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3344444444444444444444444321 223344444444444444444444444444433211110 01222333
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQA 431 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 431 (568)
.+.+.|++++|...++++.+..+......+.....+.+.|++++|...|+++...++......++.++.+|.+.|+.++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 34444444444444444443321111111111223333333333333333333322221223455556666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChHHHHHHHHHH
Q 041458 432 FQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK---SRRTDLSLEVFQMM 508 (568)
Q Consensus 432 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m 508 (568)
...++++.+. .|+...+..++..+.+.|++++|.++++++.+. .|+...++.++..+.. .|+.+++..++++|
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 6666666554 344444556666666666666666666666543 3555566655555443 34566666666666
Q ss_pred HHCCCCCCHH
Q 041458 509 IEKGQMPNET 518 (568)
Q Consensus 509 ~~~g~~p~~~ 518 (568)
.++++.|++.
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 6555444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-19 Score=180.75 Aligned_cols=424 Identities=13% Similarity=0.015 Sum_probs=294.0
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 151 (568)
.+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.+. .+...|..+..+|...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 356779999999999999875 56778899999999999999999999999998753 256788889999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
|+.-|......+-..+. ....++..+.. ..+........+.. .++...+..+.. +......+....-+++..+
T Consensus 213 A~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 99988777654211122 12222222211 12223333333321 222223332222 2221111111111111111
Q ss_pred cCCCCC-HhhHHHHHHH---HHhcCChHHHHHHHHHhhhCC-CCC-ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC
Q 041458 232 KGGKPN-LVSYNVLLTG---LCKEGRTEEAIRFFRDLPSKG-FEP-NVVSYNILLRSLCMEGRWEEANELLAEMDGGDRS 305 (568)
Q Consensus 232 ~~~~~~-~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 305 (568)
. .++ ...+..+... ....+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|...+++..... +
T Consensus 286 ~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 286 L--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred c--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 1 111 0111111111 123478899999999988754 223 44567788888889999999999999988764 3
Q ss_pred cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041458 306 PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLA 385 (568)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 385 (568)
.+...|..+...+...|++++|...|++.++... .+...|..+...+...|++++|+..|++.+...+...........
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 3466888888899999999999999999887643 356788888889999999999999999998875443334444477
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh------HHHHHHHHHh
Q 041458 386 MLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYT------YSSLIRGLCM 459 (568)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~------~~~l~~~~~~ 459 (568)
.+.+.|++++|...|++.....+. +...++.+...+...|++++|++.|++..+.....+... ++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 888899999999999998876443 567788899999999999999999999887532211111 1122223344
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.|++++|.+++++..+.... +...+..+...+.+.|++++|.+.|++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 69999999999998876543 5567889999999999999999999999874
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=184.03 Aligned_cols=295 Identities=16% Similarity=0.100 Sum_probs=153.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChhh
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD---ASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 151 (568)
..|++++|+..|+++++.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3455666666666665542 22444555555566666666666666666555321111 1334555555666666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA----FTYSFLLEAAYKERGVHAAMKLLD 227 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~ 227 (568)
|.++|+++.+. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.+.|+
T Consensus 126 A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66666665543 2234555556666666666666666666665554322211 123334445555566666666666
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC
Q 041458 228 DIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT 307 (568)
Q Consensus 228 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 307 (568)
++.+.. +.+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++|...++++.+. .|+
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 281 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPG 281 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 555442 22334455555555556666666666655554422212334455555555566666666655555543 233
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCC
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCS---EGKVDLVVKCLDQMFHRRCKP 376 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~ 376 (568)
...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 334455555555556666666655555543 3455555555544443 335555555555555544333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-18 Score=177.89 Aligned_cols=425 Identities=13% Similarity=0.018 Sum_probs=255.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+.....-.+......|+.++|++++....... ..+...+..+...+...|++++|.++|++..+. -|.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 44444455666677788888888888877522 234556777777888888888888888887765 2445666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
.+...|++++|...+++..+.. +.+.. +..+..++...|+.++|...++++.+... .+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHH
Confidence 8888888888888888887662 22444 77777777788888888888888877632 245555566667777777888
Q ss_pred HHHHHHHhhhCCCCCCh------hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCCh---HHH
Q 041458 257 AIRFFRDLPSKGFEPNV------VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKT---DHA 327 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a 327 (568)
|++.++.... .|+. .....++......+. ...+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHH
Confidence 8877776653 2221 011111111111100 011111 334
Q ss_pred HHHHHHHHHC-CCCCCcc-cHH----HHHHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHhCCCHHHHHHHH
Q 041458 328 LKVLDEMVKG-RFRPSAA-SYN----PIIARLCSEGKVDLVVKCLDQMFHRRCK-PNEGTYNGLAMLCGVGKVQEAFAII 400 (568)
Q Consensus 328 ~~~~~~~~~~-~~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~ 400 (568)
++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+.........+...|++++|...|
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4444444422 1111111 000 0012233444555555555554444321 2222222233444455555555555
Q ss_pred HHHhhCCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCCh---hhHHHHHHHHHhcCCH
Q 041458 401 QSLGNKQNSS---PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF-----------TPDS---YTYSSLIRGLCMEGLI 463 (568)
Q Consensus 401 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~g~~ 463 (568)
+++....+.. .......+..++...|++++|.+.++++.+... .|+. ..+..+...+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 5544332211 122344445556667777777777776665321 1231 2345667778888999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
++|++.++++....+. +...+..+...+...|++++|++.+++.... .| +...+......+...|++++|..++++
T Consensus 376 ~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 376 PQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999888866444 6778888888888999999999999988875 45 456666777788888999999999999
Q ss_pred HHHcCCCCHHHHHHHHHhhhh
Q 041458 543 LQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 543 ~~~~~~~~~~~~~~l~~~~~~ 563 (568)
+++..+.++.+ .++-+.+..
T Consensus 453 ll~~~Pd~~~~-~~~~~~~~~ 472 (765)
T PRK10049 453 VVAREPQDPGV-QRLARARDV 472 (765)
T ss_pred HHHhCCCCHHH-HHHHHHHHh
Confidence 99988886654 444444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-18 Score=177.26 Aligned_cols=338 Identities=13% Similarity=0.091 Sum_probs=264.9
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++.+|+.+++..+...+. +...+..++......|+++.|.+.++.+.+..+ .+...+..+...+...|+++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHH
Confidence 3456789999999999998887544 455566667777889999999999999998753 35677888889999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|...++++.+. -|.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.
T Consensus 128 ~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 999999999875 2456778889999999999999999999988765433 33333333 34788999999999999988
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH----HHHHHHHhccCCCCc
Q 041458 231 AKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE----ANELLAEMDGGDRSP 306 (568)
Q Consensus 231 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~ 306 (568)
.....++...+..+...+.+.|++++|...++++...... +...+..+...+...|++++ |...+++..... +.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 7643344455556677888999999999999998876433 56778888999999999986 799999988764 45
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM 386 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 386 (568)
+...+..+...+.+.|++++|...+++..+..+. +...+..+...+.+.|++++|...++++....+............
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 6788899999999999999999999999886533 455677788889999999999999999988754322222223567
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCChhhHH
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQNSSPQEFYK 416 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 416 (568)
+...|+.++|...|++..+..+......|.
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 788999999999999987765543333333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-18 Score=174.79 Aligned_cols=366 Identities=11% Similarity=0.016 Sum_probs=284.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
...++..+.+.|++++|..+++........ +...+..++.+....|++++|.+.++++.+.. |.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 445677888999999999999999987544 45566666677788999999999999999863 4567889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRF 260 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 260 (568)
.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998863 336778888999999999999999999988776333 33334333 347889999999999
Q ss_pred HHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 041458 261 FRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH----ALKVLDEMVK 336 (568)
Q Consensus 261 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~ 336 (568)
++.+.+....++...+..+...+...|++++|...++++.... +.+...+..+...+...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998776433445555666788899999999999999998775 5567888899999999999986 8999999988
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHH
Q 041458 337 GRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYK 416 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 416 (568)
..+. +...+..+...+.+.|++++|...+++.....+............+...|++++|...|+.+...++. +...+.
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~ 356 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNR 356 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHH
Confidence 6533 66788889999999999999999999999876554444455577888999999999999999876544 223344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 041458 417 YVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYS----SLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
.+..++...|+.++|...|++..+....--...|. .+-.++...+..++....+.+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 45678899999999999999988753221122333 33333444455544444555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-17 Score=172.09 Aligned_cols=421 Identities=10% Similarity=0.010 Sum_probs=290.4
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
......|+.++|+.++.+.... .+.+...+..+...+.+.|++++|.++++...+.. +.+...+..+...+...|+++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 3456789999999999998763 24466678899999999999999999999998864 235677888888999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|+..++++.+. .|.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...+..+.|++.++...
T Consensus 101 eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 999999999886 455666 888999999999999999999999987433 56666777888888999999999988765
Q ss_pred HcCCCCCH------hhHHHHHHHHHh-----cCCh---HHHHHHHHHhhhC-CCCCChhH-H----HHHHHHHHcCCCHH
Q 041458 231 AKGGKPNL------VSYNVLLTGLCK-----EGRT---EEAIRFFRDLPSK-GFEPNVVS-Y----NILLRSLCMEGRWE 290 (568)
Q Consensus 231 ~~~~~~~~------~~~~~ll~~~~~-----~g~~---~~A~~~~~~~~~~-~~~p~~~~-~----~~l~~~~~~~g~~~ 290 (568)
. .|+. .....++..... .+++ ++|++.++.+.+. ...|+... + ...+..+...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 4 2221 112223333321 1233 6677777777643 22232211 1 11133445668888
Q ss_pred HHHHHHHHhccCCCC-cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCCHHHHHHHH
Q 041458 291 EANELLAEMDGGDRS-PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRP---SAASYNPIIARLCSEGKVDLVVKCL 366 (568)
Q Consensus 291 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 366 (568)
+|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++.+.|++++|..++
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 888888888776422 221 22225667888888888888888877643211 1123445555677788888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 041458 367 DQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP---QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF 443 (568)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 443 (568)
+.+....+. ....+. ... ..|+ ...+..+...+...|+.++|++.++++....
T Consensus 334 ~~~~~~~P~-~~~~~~--------------------~~~--~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 334 AHTINNSPP-FLRLYG--------------------SPT--SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHhhcCCc-eEeecC--------------------CCC--CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777755321 000000 000 0112 1234556677778889999999988887753
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 444 TPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 444 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
+.+...+..+...+...|++++|++.+++..+..+. +...+..++..+...|++++|.++++++++. .|+......+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 334667788888888899999999999988875433 4667777777888888999999999998874 5655544444
Q ss_pred HHHH
Q 041458 524 VEGI 527 (568)
Q Consensus 524 l~~~ 527 (568)
-..+
T Consensus 467 ~~~~ 470 (765)
T PRK10049 467 ARAR 470 (765)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-16 Score=164.20 Aligned_cols=450 Identities=14% Similarity=0.041 Sum_probs=250.8
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAM 153 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 153 (568)
.+.|++..|+..|++.++..+......+ .++..+...|+.++|+..+++..... .........+...+...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666666654322111222 55555666666666666666665210 111222222344556666666666
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 041458 154 QLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG 233 (568)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 233 (568)
++|+++.+.. |.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 6666666552 334555556666666666666666666666554 3343334333333333444444666666666652
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHH
Q 041458 234 GKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNI 313 (568)
Q Consensus 234 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (568)
+.+...+..+...+.+.|-...|.++..+-... +.+....+ | . .+.|.+..+-.. .++.. -
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~--l-~-------~~~~a~~vr~a~----~~~~~-~-- 260 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ--L-E-------RDAAAEQVRMAV----LPTRS-E-- 260 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH--H-H-------HHHHHHHHhhcc----ccccc-c--
Confidence 224555555666666666666666555543321 11111111 0 0 011111110000 00000 0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-CCCCCccc-H-H---HHHHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhHHHHHH
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKG-RFRPSAAS-Y-N---PIIARLCSEGKVDLVVKCLDQMFHRRCK-PNEGTYNGLAM 386 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~-~-~---~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 386 (568)
- .+.--.+.|+.-++.+... +..|.... | . -.+-++...++..++++.++.+...+.. |+-........
T Consensus 261 -~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 261 -T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred -h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 0 0000123334444444331 11121111 1 1 2233555666666666666666655532 44433333566
Q ss_pred HHhCCCHHHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCC--h-
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQN-----SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF-----------TPD--S- 447 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~--~- 447 (568)
|...+++++|..+++.+..... .++......|.-++...+++++|..+++++.+... .|| -
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 6666666666666666644321 12233346677788888888888888888876311 122 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEG 526 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 526 (568)
..+..++..+...|++.+|++.++.+....+. |......+.+.+...|.+.+|.+.++.+... .| +..+......+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~ 493 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHH
Confidence 12345667788899999999999999876555 8889999999999999999999999777654 44 56677778888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
+...|++++|.++.+++.+..|.+..+.
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 8889999999999999999999877554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-16 Score=165.37 Aligned_cols=241 Identities=11% Similarity=0.010 Sum_probs=192.9
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM 386 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 386 (568)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++++...... +...+.....
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 67788888888877 89999999888887653 55443333444556899999999999998665322 3334444677
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 466 (568)
+.+.|+.++|...++...+..+. ....+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 88899999999999999887533 2233333444455669999999999999975 56788899999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
...+++..+..+. +...++.+..++...|++++|++.+++..+. .+-+...+..+..++...|++++|...+++.++.
T Consensus 629 ~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999987655 7788899999999999999999999999985 2447788999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 041458 547 QVVSESAVER 556 (568)
Q Consensus 547 ~~~~~~~~~~ 556 (568)
.+.+..+...
T Consensus 707 ~P~~a~i~~~ 716 (987)
T PRK09782 707 IDNQALITPL 716 (987)
T ss_pred CCCCchhhhh
Confidence 9886554433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-17 Score=159.91 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 428 TYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
.++|+++|.+.++.... |...-|.+.-.++..|++.+|..+|.+..+.... +..+|-.+.++|...|++..|+++|+.
T Consensus 628 ~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544221 4444455555556666666666666665544322 444555666666666666666666665
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 041458 508 MIEK-GQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERL 557 (568)
Q Consensus 508 m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 557 (568)
..+. ....+..+...|.+++.+.|.+.+|.+.+.......+.++....++
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 5543 2233555556666666666666666666666666666655444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-16 Score=158.70 Aligned_cols=422 Identities=10% Similarity=0.029 Sum_probs=279.0
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+...|+.++|+..+++.+.. .+........+...+...|++++|+++|+++.+.... +...+..++..+...++.+
T Consensus 76 ~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGG 153 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHH
Confidence 4556789999999999998732 2223334444466888899999999999999998643 5777888888999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.
T Consensus 154 eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 154 VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 999999999875 3555555555555555667767999999999874 3367788888999999999999988777644
Q ss_pred HcCCCCCHhhH--HHHHHHHHhc---------CC---hHHHHHHHHHhhhC-CCCCCh-hH----HHHHHHHHHcCCCHH
Q 041458 231 AKGGKPNLVSY--NVLLTGLCKE---------GR---TEEAIRFFRDLPSK-GFEPNV-VS----YNILLRSLCMEGRWE 290 (568)
Q Consensus 231 ~~~~~~~~~~~--~~ll~~~~~~---------g~---~~~A~~~~~~~~~~-~~~p~~-~~----~~~l~~~~~~~g~~~ 290 (568)
.. ..+....+ ...+.-.++. .+ .+.|+.-++.+... +..|.. .. ..-.+-++...|++.
T Consensus 231 ~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 231 NL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred cc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 32 11111111 0011111211 11 23344444444431 112221 11 123445567778888
Q ss_pred HHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhcCCHHHHHHH
Q 041458 291 EANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-----RPSAASYNPIIARLCSEGKVDLVVKC 365 (568)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~ 365 (568)
++++.++.+...+.+....+-..+.++|...+++++|+.+|..+..... .++......|.-++...+++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 8888888887766554455677778888888888888888887765421 11222245677777788888888888
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 041458 366 LDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ-EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT 444 (568)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 444 (568)
++.+.+..+ .-...+.. ..+.+.||- .....++..+...|+..+|++.++++.... +
T Consensus 390 l~~~~~~~p-~~~~~~~~--------------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P 447 (822)
T PRK14574 390 AVNYSEQTP-YQVGVYGL--------------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-P 447 (822)
T ss_pred HHHHHhcCC-cEEeccCC--------------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 877776321 00000000 000111121 223445666788899999999999887763 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 445 PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 445 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
-|......+.+.+...|.+.+|.+.++......+. +..+....+.++...|++++|.++.+...+. .|+......|
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 36778888888899999999999999776655333 5667777888888889999999998888874 5655444333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-16 Score=152.49 Aligned_cols=483 Identities=12% Similarity=0.083 Sum_probs=351.2
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCK---ANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG 147 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 147 (568)
.++.+-|+.+.|+..|.+.++.++ .++.++-.|...-.. ...+..+.+++...-..+. -|+.+.+.|.+.|.-.|
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKK 284 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcc
Confidence 456688999999999999988754 344444443333232 3455667777777665543 37888899999999999
Q ss_pred ChhhHHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHHcCCHHHHH
Q 041458 148 NVGYAMQLVEKMEDYGYP--TNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAF--TYSFLLEAAYKERGVHAAM 223 (568)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~ 223 (568)
++..++.+...+...... .-...|-.+.++|-..|++++|...|.+..+. .+|.+ .+.-+...+.+.|+++.+.
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHH
Confidence 999999998888764211 12345778999999999999999999887765 44443 3455778899999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcC----ChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 224 KLLDDIIAKGGKPNLVSYNVLLTGLCKEG----RTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
..|+.+... .+.+..+...+...|...+ ..+.|..++.+..+.- ..|...|-.+...+....-+.. +..+...
T Consensus 363 ~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A 439 (1018)
T KOG2002|consen 363 FCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNA 439 (1018)
T ss_pred HHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHH
Confidence 999998877 3446667777777776664 5677777777776653 3377788777777765554443 5555443
Q ss_pred ----ccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCcc------cHHHHHHHHHhcCCHHHHHHHH
Q 041458 300 ----DGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG---RFRPSAA------SYNPIIARLCSEGKVDLVVKCL 366 (568)
Q Consensus 300 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~------~~~~li~~~~~~~~~~~a~~~~ 366 (568)
...+-.+.+...|.+...+...|++.+|...|...... ...++.. +-..+...+-..++.+.|.+.+
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 23344566788999999999999999999999887754 1223331 2223444555677899999999
Q ss_pred HHHhhCCCCCChhhHHH--HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-C
Q 041458 367 DQMFHRRCKPNEGTYNG--LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYG-F 443 (568)
Q Consensus 367 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~ 443 (568)
..+++.. |.-..-.. +.+.-..+...+|...+......+.. ++..+..+...+.+...+..|.+-|+...+.- .
T Consensus 520 k~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 520 KSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 9998873 44333333 33445568889999999888776443 56678888888888888888888777665432 2
Q ss_pred CCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 444 TPDSYTYSSLIRGLCM------------EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 444 ~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.+|..+..+|.+.|.. .+..++|+++|.+..+..+. |...-|.+.-.++..|++.+|..+|.+..+.
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 3577777777776653 24678999999999887655 8888888888999999999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHhhhhcC
Q 041458 512 GQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV--SESAVERLVMQYDFEG 565 (568)
Q Consensus 512 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 565 (568)
. ..+..+|..+..+|...|++..|.++|+...+.... +..++..|.+.|...|
T Consensus 676 ~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 676 T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 3 345678888999999999999999999998876665 7888888888877655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-16 Score=143.96 Aligned_cols=458 Identities=16% Similarity=0.151 Sum_probs=323.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChhhHHHHHHHHHhCCCCC----cHHHHHHHH
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYT-YLVNCLCKKGNVGYAMQLVEKMEDYGYPT----NTVTYNSLV 175 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li 175 (568)
...|..-|..+....+|+..|+-+.+....|+...+- .+.+.+.+...+.+|++.++.....-... .....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 4445666777778889999999998887777766543 34567788889999999998776541111 133455666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CCHhhHHH
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK------------PNLVSYNV 243 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~ 243 (568)
-.+.+.|++++|..-|+...+. .|+..+-..|+-++..-|+.++..+.|.+|+..... |+....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 6778999999999999999876 678777666776777789999999999999865322 23333332
Q ss_pred HHH-----HHHhcC--ChHHHHHHHHHhhhCCCCCChhH---H------------------HHHHHHHHcCCCHHHHHHH
Q 041458 244 LLT-----GLCKEG--RTEEAIRFFRDLPSKGFEPNVVS---Y------------------NILLRSLCMEGRWEEANEL 295 (568)
Q Consensus 244 ll~-----~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~---~------------------~~l~~~~~~~g~~~~a~~~ 295 (568)
.|. -.-+.+ +.++++-.-.+++.--+.|+-.. | ..-...|.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 111111 12222222222222222333110 0 0112247889999999999
Q ss_pred HHHhccCCCCcCHhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 041458 296 LAEMDGGDRSPTIVTYNILIGSLAY--HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
+.-+.+.+-+.....-+.|-..+.- ..++..|.+.-+..+..+ +.+......-.......|++++|...+++.+...
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 9888766533333334444333333 345677777766665421 1122221112223456799999999999999876
Q ss_pred CCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 041458 374 CKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSL 453 (568)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 453 (568)
..-....|+....+-..|++++|++.|-++..--. .+....-.+...|....++..|++++.+.... ++.|+...+.|
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 66667777888888899999999999987654211 25566777788898999999999999887664 55678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 041458 454 IRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI-AHQDE 532 (568)
Q Consensus 454 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~ 532 (568)
...|-+.|+-.+|.+.+-+--+. ++-+.++...|..-|....-.++++.+|++..- +.|+..-|..++..| .+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 99999999999999887655444 455888999999999999999999999999875 699999999988666 56899
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCC
Q 041458 533 LELSAEVLKELQLRQVVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 533 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (568)
+.+|..+++...++-+.+.+.++.|++...--|+
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999988766654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-15 Score=130.59 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChhhHH---HHHHHHHccCChHHHHHHHHHHHHCC
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEE-YDYKPDVDNFN---ALLLGLCKSRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g 512 (568)
...+..+-.+.+.|..++|.+++..+.+ .+-.|-....| .+++.-.+.+++..|...++-|...+
T Consensus 523 t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 523 TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3445555556677777777777776642 22223333344 34445555666666776666665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-13 Score=130.12 Aligned_cols=465 Identities=11% Similarity=0.023 Sum_probs=238.4
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041458 81 DAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKME 160 (568)
Q Consensus 81 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 160 (568)
.=.++++..++. ++.++..|.. .....+.+.|+.++.++.+.- +.+...|. +|++...++.|.+++++..
T Consensus 364 ~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaR 433 (913)
T KOG0495|consen 364 NKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAR 433 (913)
T ss_pred HHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344566666665 3334444443 233455566777777666642 12333333 3445555666777777766
Q ss_pred hCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 041458 161 DYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLI----QKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP 236 (568)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (568)
+. +|.+...|.+-...--.+|+.+...+++++-+ ..|+..+...|..=...|-..|..-.+..+....+.-|+..
T Consensus 434 e~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 434 EI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred hh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence 54 56666677666666666677766666665432 34666666666666666666666666666666555555432
Q ss_pred --CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHH
Q 041458 237 --NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNIL 314 (568)
Q Consensus 237 --~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (568)
-..+|+.-...|.+.+.++-|..+|....+. ++-+...|......--..|..++...+|++.... ++.....|-..
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ 590 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMY 590 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHH
Confidence 1245555555556666666666666555543 1223344444444444445555555555555443 12233344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCH
Q 041458 315 IGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKV 393 (568)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 393 (568)
...+-..|++..|..++..+.+.... +...|-.-+.....+.+++.|..+|.+....+ |....|.- +...--.+..
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhH
Confidence 44444555555555555555544322 44445555555555555555555555544432 22222222 2222333455
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 394 QEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVV 472 (568)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 472 (568)
++|.+++++..+..+. -.-.|-.+.+.+-+.++.+.|.+.|..-.+. .|+ ...|..|...--+.|.+-+|..++++
T Consensus 668 eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 5555555444443222 1223444444444444444444444433332 222 22333333333444444444444444
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC-----------------------------CCCCCHHHHHHH
Q 041458 473 MEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK-----------------------------GQMPNETTYTIL 523 (568)
Q Consensus 473 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------------------------g~~p~~~~~~~l 523 (568)
..-.++. |...|...|..-.+.|..+.|..+..++++. ...-|+.....+
T Consensus 745 arlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai 823 (913)
T KOG0495|consen 745 ARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI 823 (913)
T ss_pred HHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence 4433333 4444444444444444444444444333321 022344555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
...+....+++.|+++|++.++.++...++..-+.+.+..+|
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 566666677888888888888888887777777777777776
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-14 Score=128.92 Aligned_cols=432 Identities=16% Similarity=0.223 Sum_probs=298.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCChhhH-HHHHHHHHhCCCCCcHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNC--LCKKGNVGYA-MQLVEKMEDYGYPTNTVTYNSL 174 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l 174 (568)
+++=+.|+. ...+|.++++.-+|+.|...|...+..+-..|++. |-...++--| ++.|-.|...|- .+..+|.
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sWK-- 191 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSWK-- 191 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccccc--
Confidence 344555554 45668888899999999988877777766666553 3333343333 345555655542 2344442
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 041458 175 VRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRT 254 (568)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 254 (568)
.|+..+ ++-+. .+.+..++..+|.+.|+-...+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 192 ------~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--- 255 (625)
T KOG4422|consen 192 ------SGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--- 255 (625)
T ss_pred ------cccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---
Confidence 343322 33222 23467889999999999999999999999998888888999999988764322
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH----HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH-HHH
Q 041458 255 EEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE----ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH-ALK 329 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~ 329 (568)
...++..+|.+..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 256 -~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 256 -VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred -ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 227888899988899999999999999999998765 46778888999999999999999998888877754 444
Q ss_pred HHHHHHH----CCCCC----CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCC--hhhHHH--HHHHHhCCCH
Q 041458 330 VLDEMVK----GRFRP----SAASYNPIIARLCSEGKVDLVVKCLDQMFHRR----CKPN--EGTYNG--LAMLCGVGKV 393 (568)
Q Consensus 330 ~~~~~~~----~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~--~~~~~~--~~~~~~~~~~ 393 (568)
++.++.. +.++| |..-|...+..|.+..+.+.|.++..-+.... +.|+ ...|+. ....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 33333 33345566777888888888888776654321 1121 122322 6677888889
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C--------HH
Q 041458 394 QEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG-L--------IE 464 (568)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~--------~~ 464 (568)
+.-...|+.|...-..|...+...++++..-.|.++-.-++|..++..|..-+...-.-++..+++.. . +.
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 99999999998888888888888888988889999988888888887775544444444444444433 1 00
Q ss_pred -----HHHHHH-------HHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Q 041458 465 -----EALEIF-------VVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ----MPNETTYTILVEGIA 528 (568)
Q Consensus 465 -----~a~~~~-------~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~ 528 (568)
-|..++ .+|.+. .......++..-.+.+.|+.++|.+++....+.+- .|.-....-+++.-.
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 011111 223333 33456778888889999999999999999866532 233344556777778
Q ss_pred hcCChhHHHHHHHHHHHcCCCCHH
Q 041458 529 HQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.......|..+++-+...+...-+
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCchhhh
Confidence 888999999999999877766333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-13 Score=129.53 Aligned_cols=451 Identities=14% Similarity=0.072 Sum_probs=247.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 041458 78 KLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVE 157 (568)
Q Consensus 78 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 157 (568)
+.++|.-++.+..+- ++.+.. |.-+|++..-++.|..+++...+. ++-+...|.+-...--..|+.+...++.+
T Consensus 391 ~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344466666666553 222222 233445555566666666666553 33355566555555555666665555554
Q ss_pred HH----HhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---------------------------------
Q 041458 158 KM----EDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLV--------------------------------- 200 (568)
Q Consensus 158 ~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--------------------------------- 200 (568)
+- ...|+..+...|-.=...|-..|..-.+..+....+..|+.
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 32 23455555555554444444445444444444444444332
Q ss_pred ---CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHH
Q 041458 201 ---PNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYN 277 (568)
Q Consensus 201 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 277 (568)
-+...|......--..|..+.-..+|++.... .+-....|-.....+-..|+...|..++....+.... +...|-
T Consensus 545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwl 622 (913)
T KOG0495|consen 545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWL 622 (913)
T ss_pred hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHH
Confidence 23333444443334445555555555555444 2223344444444455555555555555555544222 444555
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhc
Q 041458 278 ILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPS-AASYNPIIARLCSE 356 (568)
Q Consensus 278 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 356 (568)
.-+.......+++.|..+|.+.... .|+...|..-+..---.++.++|++++++.++. -|+ ...|..+.+.+-+.
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 5555555555666666666555442 345555555555445555566666666555543 122 22334444455555
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041458 357 GKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLL 435 (568)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 435 (568)
++.+.|...|..-.+.-+. ....|.+ ...--+.|.+-.|..++++...+++. +...|-..|..-.+.|+.+.|..+.
T Consensus 699 ~~ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555444433211 1122222 22333445666666666666655554 5556666666666666666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 041458 436 YEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 436 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
.+..+. ++-+...|..-|....+.++-.+..+.+++. +-|......+...+....++++|.+.|++.++.+ +.
T Consensus 777 akALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d 849 (913)
T KOG0495|consen 777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PD 849 (913)
T ss_pred HHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence 665554 2334445555555555555544443333322 2366777778888888899999999999999863 33
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 516 NETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
.-.+|..+..-+.++|.-+.-.+++.+.....|.
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 5588888899999999988889999988887776
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-13 Score=124.91 Aligned_cols=443 Identities=11% Similarity=0.060 Sum_probs=326.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...|.....--..++++..|..+|+.++.-.. .+...|...+.+-.++..+..|..+|++.... +|.-...|.-.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 445555555555677888899999999887653 36667888888888889999999999988875 3444456777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
+--..|+...|.++|++-.+. .|+...|.+.|+.-.+.+.++.|..++++.+-. .|++.+|--....--+.|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 777789999999999988764 889999999999999999999999999988765 6888888888888888999999
Q ss_pred HHHHHHHhhhC-C-CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC--HhhHHHHHHHHHhcCChHHHHH---
Q 041458 257 AIRFFRDLPSK-G-FEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT--IVTYNILIGSLAYHGKTDHALK--- 329 (568)
Q Consensus 257 A~~~~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~--- 329 (568)
|..+|....+. | -..+...+++....-.++..++.|.-+|+-....= +.+ ...|..+...=-+.|+......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99998887653 1 01123445555555566778888888888776542 222 3444444444444555443332
Q ss_pred -----HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH------HH----HHHhCCCHH
Q 041458 330 -----VLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG------LA----MLCGVGKVQ 394 (568)
Q Consensus 330 -----~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~ 394 (568)
-++.+++.+ +.|-.+|-..+..-...|+.+...+++++++..-++.....+-- +. .-....+++
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 244455544 34777788888888888999999999999987644332221111 11 112467889
Q ss_pred HHHHHHHHHhhCCCCCChhh----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 395 EAFAIIQSLGNKQNSSPQEF----YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
.+.++|+...+. ++-...+ |........++.++..|.+++...+ |..|...+|...|..-.+.+.++.+.+++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999887763 2223333 3344444557889999999998877 56888889999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 471 VVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ-MPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 471 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
++..+.++. |..+|......-...|+.+.|..+|+-++.... ......|...|+-=...|.++.|+.+++++++....
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 999998776 888898888888889999999999999987532 234577888888888899999999999999887765
Q ss_pred CH
Q 041458 550 SE 551 (568)
Q Consensus 550 ~~ 551 (568)
..
T Consensus 540 ~k 541 (677)
T KOG1915|consen 540 VK 541 (677)
T ss_pred ch
Confidence 44
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-13 Score=121.08 Aligned_cols=456 Identities=10% Similarity=0.072 Sum_probs=343.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChhhHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDA-SSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~ 154 (568)
.+++..|..+|++.+... ..+...|...+..-.+++.+..|..+++.+... .|-+ ..|-..+.+--..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 577889999999998875 558888999999999999999999999999875 3333 356666666777899999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-C
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK-G 233 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~ 233 (568)
+|++-.+ ..|+..+|++.|+.-.+.+.++.|..++++.+- +.|++.+|-.....-.++|+...+..+|+...+. |
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 9999887 579999999999999999999999999999876 4799999999999999999999999999988775 1
Q ss_pred C-CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHcCCCHHHHHHH--------HHHhccC
Q 041458 234 G-KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN--VVSYNILLRSLCMEGRWEEANEL--------LAEMDGG 302 (568)
Q Consensus 234 ~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~ 302 (568)
. ..+...+.+....-.++..++.|.-+|+-..+. ++.+ ...|..+...--+-|+....... ++.+.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 123344555555556778899999999887765 2212 34454444444445654443332 3334444
Q ss_pred CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHH--------HHhcCCHHHHHHHHHHHhhC
Q 041458 303 DRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA--ASYNPIIAR--------LCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~ 372 (568)
+ +.|..+|-..+..-...|+.+...++|++.+.. ++|-. ..|...|-. -....+.+.+.+++...++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3 668888988898888899999999999999875 33311 223333321 13467889999999988873
Q ss_pred CCCCChhhHHH-----HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 041458 373 RCKPNEGTYNG-----LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS 447 (568)
Q Consensus 373 ~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 447 (568)
++....++.- .....++.++..|.+++-..... .|..-++...|..-.+.++++....++++.++.++. |.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hh
Confidence 3445555554 22334678899999999877654 456677888899889999999999999999987543 77
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEY-DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
.+|......-...|+.+.|..+|+...+. ........|-+.|+.-...|.++.|..+++++++. .+...+|.....-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~f 549 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHH
Confidence 88988888888899999999999998853 23334567888888888999999999999999985 4455577666543
Q ss_pred HH-----hcC-----------ChhHHHHHHHHHHHcC
Q 041458 527 IA-----HQD-----------ELELSAEVLKELQLRQ 547 (568)
Q Consensus 527 ~~-----~~g-----------~~~~a~~~~~~~~~~~ 547 (568)
-. +.| +...|+++|+++....
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 22 233 4667888888875443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-13 Score=133.52 Aligned_cols=467 Identities=14% Similarity=0.082 Sum_probs=329.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
.|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-.+-..+. .|...|-.+.....+.|+++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHH
Confidence 499999999999999984 45788999999999999999999988776665543 3778899999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 156 VEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAF----TYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
|.+..+.. |++....---+..|-+.|+...|.+-|.++.+...+.|.. .--.+++.+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999874 4566666667888999999999999999998874322222 222345667778888999999988877
Q ss_pred cC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC---------------------------CCCChhHHHHHHHHH
Q 041458 232 KG-GKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG---------------------------FEPNVVSYNILLRSL 283 (568)
Q Consensus 232 ~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------------------------~~p~~~~~~~l~~~~ 283 (568)
.+ ...+...++.++..+.+...++.|......+.... ..++...+ -+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 32 23456678899999999999999999888876621 12222221 223334
Q ss_pred HcCCCHHHHHHHHHHhccCC--CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 041458 284 CMEGRWEEANELLAEMDGGD--RSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDL 361 (568)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 361 (568)
.+.+..+....+........ +.-+...|..+..+|...|++.+|+.+|..+......-+...|-.+..+|...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44444444444444454444 3446678889999999999999999999999987555567889999999999999999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCC--------CCCChhhHHHHHHHHHhcCChhHHHH
Q 041458 362 VVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQ--------NSSPQEFYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~ 433 (568)
|.+.++.++...+............+-+.|+.++|.+.+..+...+ ..|+....-.....+.+.|+.++=+.
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999998866555555556778889999999999999866332 22233334445566777888877555
Q ss_pred HHHHHHHCC-----C-----------------CCChhhHHHHHHHHHhcCCHHHHHHHHH------HHHhCCCCCCh--h
Q 041458 434 LLYEMTKYG-----F-----------------TPDSYTYSSLIRGLCMEGLIEEALEIFV------VMEEYDYKPDV--D 483 (568)
Q Consensus 434 ~~~~~~~~~-----~-----------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~------~m~~~~~~p~~--~ 483 (568)
+...|.... + .-...+...++.+-.+.++.....+... .-...|+..+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 555443311 1 1111222233333333333221111111 11112222221 3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQ--MPNE---TTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
.+..++..+++.+++++|..+...+..... .++. ..-...+.++...+++..|..+++.++..
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 456678899999999999999999887432 2222 22345567778899999999999999877
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-14 Score=129.34 Aligned_cols=458 Identities=14% Similarity=0.106 Sum_probs=310.9
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcC
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQAT-NLLYDLCKANKMKKAIKVMEMMVSSGIIPDA----SSYTYLVNCLCKKG 147 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 147 (568)
|.-+....+|+..++-+++...-||.-... .+...+.+.+.+.+|+++|+....+-+..+. ...+.+...+.+.|
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g 290 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG 290 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc
Confidence 334456678888888877766666654432 3556778889999999999988876322222 23444445678899
Q ss_pred ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------------CHhhHHHHH-----
Q 041458 148 NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP------------NAFTYSFLL----- 210 (568)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------------~~~~~~~li----- 210 (568)
.++.|+..|+...+. .||..+-..|+-++..-|+.++..+.|.+|+.....| +....+-.|
T Consensus 291 qy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l 368 (840)
T KOG2003|consen 291 QYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL 368 (840)
T ss_pred cchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence 999999999998875 4787766667777777899999999999998653222 322222222
Q ss_pred HHHHHcCC--HHHHHHHHHHHHHcCCCCCHhh-------------HH--------HHHHHHHhcCChHHHHHHHHHhhhC
Q 041458 211 EAAYKERG--VHAAMKLLDDIIAKGGKPNLVS-------------YN--------VLLTGLCKEGRTEEAIRFFRDLPSK 267 (568)
Q Consensus 211 ~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~-------------~~--------~ll~~~~~~g~~~~A~~~~~~~~~~ 267 (568)
.-+-+.+. .+++.-.--+++.--+.|+-.. +. .-..-+.++|+++.|.++++-..++
T Consensus 369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k 448 (840)
T KOG2003|consen 369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK 448 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence 11212111 1222211122222112222100 00 1123467899999999999888776
Q ss_pred CCCCChhHHHHHHHHHHc--CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCccc
Q 041458 268 GFEPNVVSYNILLRSLCM--EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAAS 345 (568)
Q Consensus 268 ~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 345 (568)
.-+.-...-+.|-..+.- -.++.+|.+.-+.....+ .-+......-.+.....|++++|.+.|++.+.. |..+
T Consensus 449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc 523 (840)
T KOG2003|consen 449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASC 523 (840)
T ss_pred cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHH
Confidence 333223333333333222 346778888777766443 334444433444556779999999999999875 3333
Q ss_pred HHHHH---HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041458 346 YNPII---ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSL 422 (568)
Q Consensus 346 ~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 422 (568)
-.++. -.+-..|+.++|+..|-++...-.....+.+.....|....+...|++++-+.... ++.|+.....+...|
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 33332 24667899999999998876543334445555577888889999999999877655 445788899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HccCChHHH
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL-CKSRRTDLS 501 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a 501 (568)
-+.|+-..|.+.+-+--+. ++-+..+..-|..-|....-.++++.+|++..- +.|+..-|..|+..| .+.|++..|
T Consensus 603 dqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999988765554 455777888888888999999999999998764 579999999888655 568999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
.++++....+ ++-|...+..|++.|...|.. ++.++.+++
T Consensus 680 ~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 680 FDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred HHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 9999998876 677999999999999888753 344454444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-12 Score=124.97 Aligned_cols=391 Identities=15% Similarity=0.097 Sum_probs=222.2
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 041458 141 NCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVH 220 (568)
Q Consensus 141 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 220 (568)
+.....|++++|.+++.++.+. .|.+...|.+|...|-..|+.+++...+-..-... +-|...|..+.....+.|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 3333447888888888777765 35567778888888888888877777665554443 336677777777777778888
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChh----HHHHHHHHHHcCCCHHHHHHHH
Q 041458 221 AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVV----SYNILLRSLCMEGRWEEANELL 296 (568)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~ 296 (568)
+|.-.|.+.++.. +++...+---...|-+.|+...|..-|.++.......|.. ..-.++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888887777762 3344444455667777788877777777776653211211 1223344555666667777777
Q ss_pred HHhccC-CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh--hCC
Q 041458 297 AEMDGG-DRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMF--HRR 373 (568)
Q Consensus 297 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~ 373 (568)
+..... +-..+...++.++..+.+...++.|.............+|..-|..-= .... -+.-.. ...
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----~~~~------~~~~~~~~~~~ 373 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----RRRE------EPNALCEVGKE 373 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----hccc------cccccccCCCC
Confidence 666542 113345566677777777777777776666655422222222210000 0000 000000 001
Q ss_pred CCCChhhHHHHHHHHhCC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 041458 374 CKPNEGTYNGLAMLCGVG--KVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYS 451 (568)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 451 (568)
..++.........+.+.. ...+++.-|.......+..+...|.-+..+|...|++.+|+.+|..+......-+...|-
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 111222212222233333 333333333322222234445566677777777777777777777776653333455677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH--------HCCCCCCHHHHHHH
Q 041458 452 SLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMI--------EKGQMPNETTYTIL 523 (568)
Q Consensus 452 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~l 523 (568)
.+..+|...|.+++|.+.|+......+. +...-..|...+.+.|+.++|.+.++.+. ..+..|+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 7777777777777777777777654333 44455566666777777777777777643 12334455555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 041458 524 VEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~ 545 (568)
...+...|+.++=......|+.
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 5666667776664444444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.8e-13 Score=127.38 Aligned_cols=282 Identities=13% Similarity=0.072 Sum_probs=152.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCChhhH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNL-LYDLCKANKMKKAIKVMEMMVSSGIIPDASSYT--YLVNCLCKKGNVGYA 152 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a 152 (568)
+|+++.|.+.+....+... +...+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 4666666665555433211 12222222 23335666666666666666654 23332221 224456666666666
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA-------FTYSFLLEAAYKERGVHAAMKL 225 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~ 225 (568)
.+.++++.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666666553 345566666666666666666666666666665433211 1222223333333444445555
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC
Q 041458 226 LDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRS 305 (568)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 305 (568)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+.+.+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 5544332 2335555566666666666666666666666553 223211 12333334466666666666665543 3
Q ss_pred cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 306 PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
-|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555666666666666666666666666654 3555566666666666666666666666554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=127.19 Aligned_cols=293 Identities=10% Similarity=-0.010 Sum_probs=159.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHH
Q 041458 215 KERGVHAAMKLLDDIIAKGGKPN-LVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEAN 293 (568)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 293 (568)
..|+++.|.+.+.+..+. .|+ ...+-....++.+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 355555555555554443 222 12222333444555555555555555543321111112222344455555555555
Q ss_pred HHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCCHHHHHHHHHHHhhC
Q 041458 294 ELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI-IARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
..++.+.+.. +-+..++..+...+.+.|++++|.+.+..+.+.+.. +...+..+ ..++
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-------------------
Confidence 5555555543 334445555555555555555555555555554322 11111100 0000
Q ss_pred CCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 041458 373 RCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNS---SPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYT 449 (568)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 449 (568)
......+..+++.+.+..+....+. .+...+..+...+...|+.++|.+++++..+. .||...
T Consensus 233 ------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~ 298 (409)
T TIGR00540 233 ------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRA 298 (409)
T ss_pred ------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCccc
Confidence 0001111111122233333222221 25667777888888888888888888888875 344332
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041458 450 ---YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDV--DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILV 524 (568)
Q Consensus 450 ---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 524 (568)
...........++.+.+.+.++...+..+. |. ....++...+.+.|++++|.+.|+........|+...+..+.
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 111222223457778888888877765332 44 566688888888999999999998533323478888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 041458 525 EGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~ 545 (568)
..+.+.|+.++|.+++++...
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999888887643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-12 Score=124.10 Aligned_cols=291 Identities=11% Similarity=0.021 Sum_probs=172.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHH--HHHHHHHcCCCHHHHH
Q 041458 216 ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYN--ILLRSLCMEGRWEEAN 293 (568)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~ 293 (568)
.|+++.|++.+....+....| ...|........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555544331111 112222233335566666666666665543 23322221 2244555566666666
Q ss_pred HHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHhcCCHHHHHHHHHHHhhC
Q 041458 294 ELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPII-ARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..+ ......+- .++.
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~------------------ 233 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAWI------------------ 233 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH------------------
Confidence 6666665543 3345555555666666666666666666665543321 11111000 0000
Q ss_pred CCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 041458 373 RCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSS 452 (568)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 452 (568)
..+.......+.+...+.++.+.... +.+......+...+...|+.++|.+++++..+. .|+... .
T Consensus 234 ---------~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~ 299 (398)
T PRK10747 234 ---------GLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--V 299 (398)
T ss_pred ---------HHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--H
Confidence 00111111223334444444443322 235667778888888999999999999888774 444422 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 532 (568)
++.+....++.+++.+..+...+..+. |...+.++...+.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC
Confidence 344444568899999999888876544 6777888899999999999999999999874 7888888888999999999
Q ss_pred hhHHHHHHHHHHHc
Q 041458 533 LELSAEVLKELQLR 546 (568)
Q Consensus 533 ~~~a~~~~~~~~~~ 546 (568)
.++|.+++++....
T Consensus 377 ~~~A~~~~~~~l~~ 390 (398)
T PRK10747 377 PEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988877653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-12 Score=125.72 Aligned_cols=290 Identities=11% Similarity=0.014 Sum_probs=149.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
..|+++.|.+.+....+..+. ....+-.......+.|+++.|.+.++.+.+....+...........+...|+++.|.+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 356666666666665554221 1222233345555666777777776666554211111223334555666666777776
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHH---HHcCCHHHHHHHHHHHH
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYS-FLLEAA---YKERGVHAAMKLLDDII 230 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~~~ 230 (568)
.++.+.+.. |.+..++..+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666653 345556666666666777777777766666665433 222221 111111 11122222222333333
Q ss_pred HcCC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhH---HHHHHHHHHcCCCHHHHHHHHHHhccCCC
Q 041458 231 AKGG---KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVS---YNILLRSLCMEGRWEEANELLAEMDGGDR 304 (568)
Q Consensus 231 ~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 304 (568)
.... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 2211 1255566666666666666666666666666542 22221 1111112233455566666666655442
Q ss_pred CcCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 305 SPTI--VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 305 ~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2233 44455666666666666666666643332234555556666666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=138.94 Aligned_cols=261 Identities=17% Similarity=0.156 Sum_probs=81.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 041458 103 NLLYDLCKANKMKKAIKVMEMMVSSG-IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCML 181 (568)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (568)
.+...+.+.|++++|+++++...... ...|...|..+.......++.+.|++.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666667777777664433322 1224444555555555666666777766666654322 44455555555 566
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCChHHHHHH
Q 041458 182 GNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG-GKPNLVSYNVLLTGLCKEGRTEEAIRF 260 (568)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~ 260 (568)
+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666655443 2345555666666666667776666666655432 234555666666666667777777777
Q ss_pred HHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 041458 261 FRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR 340 (568)
Q Consensus 261 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (568)
+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+...
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p- 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP- 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence 7666655222 35556666666666666666666666655443 34455566666666666777777777766665432
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 341 PSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 341 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
.|+.....+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 255555666666666677766666665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-11 Score=108.72 Aligned_cols=378 Identities=11% Similarity=0.040 Sum_probs=221.7
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhH--HH
Q 041458 166 TNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSY--NV 243 (568)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 243 (568)
.|...+-.....+-+.|....|...|...... -+..|.+.+....-..+.+.+..+.. |.+.|.... --
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHH
Confidence 34444444444455666777777777666543 23334433333222223222222111 111111111 12
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCC--CcCHhhHHHHHHHHHhc
Q 041458 244 LLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDR--SPTIVTYNILIGSLAYH 321 (568)
Q Consensus 244 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 321 (568)
+..++-...+.+++.+-.......|+.-+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 2344445556677777777766666665555555555666677777777777777776531 12556666655332221
Q ss_pred CChH-HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHH
Q 041458 322 GKTD-HALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAII 400 (568)
Q Consensus 322 g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 400 (568)
.+.. -|..++. + .. --+.|...+.+-|.-.++.++|...|++.++.++.-.........-|....+...|...+
T Consensus 313 skLs~LA~~v~~-i--dK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I--DK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHHH-h--cc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1111 1111111 1 11 233455566666777777777777777777665433333322355666677777777777
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041458 401 QSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480 (568)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 480 (568)
+...+-++. |-..|-.+.++|.-.+.+.-|+-.|++..+.. +.|+..|.+|...|.+.++.++|.+.|......|-.
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 777766544 66778888888888888888888888887752 336778888888888888888888888888765533
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEK----GQMPN--ETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
+...+..+...|-+.++.++|.+.+++.++. |...+ .....-|..-+.+.+++++|..+.......+. .-+--
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-e~eea 543 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-ECEEA 543 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-hHHHH
Confidence 5577888888888888888888888776652 32222 22222355566778888888877777766532 33333
Q ss_pred HHHHHhh
Q 041458 555 ERLVMQY 561 (568)
Q Consensus 555 ~~l~~~~ 561 (568)
++|++..
T Consensus 544 k~LlRei 550 (559)
T KOG1155|consen 544 KALLREI 550 (559)
T ss_pred HHHHHHH
Confidence 4454443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=136.60 Aligned_cols=259 Identities=17% Similarity=0.134 Sum_probs=115.2
Q ss_pred chhhccCChHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKG-HKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
..+.+.|++++|+++++...... .+.|...|..+.......++++.|++.++.+...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 34567899999999997655543 3445666666667777899999999999999987643 56677777777 789999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG-LVPNAFTYSFLLEAAYKERGVHAAMKLLDD 228 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 228 (568)
++|.+++....+. .++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999877654 2577778889999999999999999999987643 346778888999999999999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 229 IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
.++.. +.|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..++++..+.. +.|.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 99883 3367788899999999999999999988877653 4466788899999999999999999999988764 5688
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
.....+..++.+.|+.++|.++..++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 8899999999999999999999887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-11 Score=112.73 Aligned_cols=424 Identities=15% Similarity=0.070 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCc-HHHHHHHHHHH
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD-ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTN-TVTYNSLVRGL 178 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 178 (568)
+.....-|.++|++++|++.|.+.++. .|| +.-|.....+|...|++++..+--.+..+. .|+ +.++..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 445667788999999999999999986 467 777888889999999999999988888774 344 44666677778
Q ss_pred HhcCChHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-cC--CCCCHhhHHHHHHHHHhcCCh
Q 041458 179 CMLGNLNQSLQFLDRLIQ-KGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA-KG--GKPNLVSYNVLLTGLCKEGRT 254 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~ll~~~~~~g~~ 254 (568)
-..|++++|+.=..-..- .|+. |..+--.+=+.+-+ .|.+-.++-.. .+ +-|+.....+....+... +
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--P 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--c
Confidence 888888877643222211 1111 11111111111111 11111222112 11 223333333333322110 0
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHcC-CCHHHHHHHHHHhccC---CCCc---C------HhhHHHHHHHHHhc
Q 041458 255 EEAIRFFRDLPSKGFEPNVVSYNILLRSLCME-GRWEEANELLAEMDGG---DRSP---T------IVTYNILIGSLAYH 321 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~---~~~~---~------~~~~~~l~~~~~~~ 321 (568)
...+...+.+.|...-..+=..+... ..+..|...+.+-... .... | ..+.......+.-.
T Consensus 266 ------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 266 ------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred ------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 00000000001111111111111110 1222333322221100 0000 1 11222222334456
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHH
Q 041458 322 GKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQ 401 (568)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 401 (568)
|+.-.|.+-|+..++....++ ..|-.+..+|....+.++..+.|++....++....+-+.-..+..-.+++++|..-|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 777788888888777654322 2255666678888888888888888887776655555555666777778888888888
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--
Q 041458 402 SLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK-- 479 (568)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-- 479 (568)
+.....+. +...|..+..+..+.++++++...|++.++. ++.-+..|+.....+...+++++|.+.|+...+....
T Consensus 419 Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 87776443 4455666666666778888888888888775 4445677888888888888888888888877654221
Q ss_pred ---CChhhH--HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 480 ---PDVDNF--NALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 480 ---p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
.+...+ -.++-. --.+++..|.+++++..+.+ +-....+..|...-.+.|+.++|+++|++....-
T Consensus 497 ~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111111 112211 12377888888888888742 2255677788888888888888888888765543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-11 Score=107.62 Aligned_cols=364 Identities=10% Similarity=0.022 Sum_probs=253.2
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-Hhh-H
Q 041458 129 IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPN-AFT-Y 206 (568)
Q Consensus 129 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~-~ 206 (568)
...|...+-.....+.+.|..+.|+..|...... .|..=.+|..|.... .+.+ +....... ...| ... -
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e----~~~~l~~~-l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIE----ILSILVVG-LPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHH----HHHHHHhc-CcccchHHHH
Confidence 3345444444445566788888899988887754 333444444444332 2222 22222222 1212 111 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCChhHHHHHHHHHH
Q 041458 207 SFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF--EPNVVSYNILLRSLC 284 (568)
Q Consensus 207 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~ 284 (568)
-.+..++-...+.+++..-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+ --|..+|..++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 123456666678888888888888888876666666666667788899999999999988722 125667776654332
Q ss_pred cCCCHH-HHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 041458 285 MEGRWE-EANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVV 363 (568)
Q Consensus 285 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 363 (568)
...++. -|..++ .+. +.-+.|...+.+-|+-.++.++|...|++.++.+.. ....|+.+.+-|....+...|+
T Consensus 311 ~~skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 222211 122222 121 223567778888899999999999999999987644 5677888889999999999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 041458 364 KCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF 443 (568)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 443 (568)
.-++.+++-.+..-...|....+|.-.+...-|+-.|++...-.+. |...|.+|..+|.+.++.++|++.|......|-
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9999999887666666677788999999999999999998876554 889999999999999999999999999998763
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 444 TPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE----YDYKPD--VDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 444 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
.+...+..|...|-+.++.++|..+|++..+ .|...+ .....-|..-+.+.+++++|........
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 3668899999999999999999999987764 233312 1222224556677778877776655544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.9e-13 Score=125.49 Aligned_cols=281 Identities=16% Similarity=0.113 Sum_probs=150.9
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL--VPNAFTYSFLLEAAYKERGVHAAMKLL 226 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 226 (568)
..+|...|.++.+. +..+..+...+.++|...+++++|.++|+.+.+... .-+..+|.+.+..+-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45566666664443 222334555566666666677777777766655421 12455565555433221 112222
Q ss_pred -HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCC
Q 041458 227 -DDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEP-NVVSYNILLRSLCMEGRWEEANELLAEMDGGDR 304 (568)
Q Consensus 227 -~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 304 (568)
+.+.+. .+-.+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+....++|.|+..|+......
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 122221 2335566666666666666666666666666654 23 45566666566666666666666666665432
Q ss_pred CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 041458 305 SPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGL 384 (568)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (568)
+.+...|.-+...|.+.++++.|+-.|++..+-++. +.+....+...+-+.|+.|+|+.+++++....+......|..+
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 223344445556666666666666666666655433 4444444555566666666666666666665555444445445
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 385 AMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTK 440 (568)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 440 (568)
..+...++.++|+..++++++.-+. +...+-.+...|.+.|+.+.|+.-|.-+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5555555555555555555543222 223344444455555555555555544444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-10 Score=106.36 Aligned_cols=283 Identities=13% Similarity=0.006 Sum_probs=217.9
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 041458 271 PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPII 350 (568)
Q Consensus 271 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 350 (568)
-+......-.+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++++.- +..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 345555566666778899999999999988775 6677777777778889999888888878888764 34778899988
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 041458 351 ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQ 430 (568)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (568)
--|.-.|+..+|++.|.+.......-...+......+.-.|..+.|...+....+.-+.. ...+-.+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHhccHHH
Confidence 888888999999999999887766666666666778888899999998888766543221 1124445566888899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CChhhHHHHHHHHHccCChHHHHHH
Q 041458 431 AFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYK--PDVDNFNALLLGLCKSRRTDLSLEV 504 (568)
Q Consensus 431 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~--p~~~~~~~li~~~~~~g~~~~a~~~ 504 (568)
|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..... +.+ --..+++.|..+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999887642 335677777777778889999999999877621 111 1344688889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 041458 505 FQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLV 558 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 558 (568)
+++.+.. .+-|..++..+.-.|...|+++.|...+.+.+...+.+.-+...|-
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999886 3558889999988899999999999999999998888755444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.8e-11 Score=104.68 Aligned_cols=449 Identities=15% Similarity=0.151 Sum_probs=263.3
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
.-+....++..|+.+++.-...+-.-...+-.-+...+.+.|++++|..++..+.+.. .++...+-.|..++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3445677888999988876544322221222335566679999999999999888754 567778888888888889999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|..+-.+..+ ++-.-..|+..-.+.++-++-..+.+.+... ..--.++.+.....-.+.+|++++.+.+
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888665543 5555666777777888888877777766532 2333445555555556889999999988
Q ss_pred HcCCCCCHhhHHHHHH-HHHhcCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 231 AKGGKPNLVSYNVLLT-GLCKEGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 231 ~~~~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
.. .|+....|..+. +|.+..-++-+.++++-..+. -|| ....|..+....+.=.-..|+.-..++...+-. .
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c-
Confidence 76 445556665544 557788888888888776655 233 344444444333332222333333333322210 0
Q ss_pred hhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 309 VTYNILIGSLAYH-----GKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG 383 (568)
Q Consensus 309 ~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (568)
| ..+.-.++. .+-+.|++++-.+.+. -| ..-..++--|.+.+++++|..+.+++... .|-......
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKg 323 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKG 323 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 1 111122222 3345666666555542 11 12223444567777777777776655311 222222222
Q ss_pred HHHHHh-------CCCHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041458 384 LAMLCG-------VGKVQEAFAIIQSLGNKQNSSPQEF-YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIR 455 (568)
Q Consensus 384 ~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 455 (568)
+ .... .....-|.+.|+-..+.+...|... -.++...+.-..++++.+-.++.+... +..|......+..
T Consensus 324 v-v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQ 401 (557)
T KOG3785|consen 324 V-VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQ 401 (557)
T ss_pred H-HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHH
Confidence 1 1111 2234556666666555544444322 334455555566777777777766654 2333333345677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCh
Q 041458 456 GLCMEGLIEEALEIFVVMEEYDYKPDVDNFN-ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE-TTYTILVEGIAHQDEL 533 (568)
Q Consensus 456 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~ 533 (568)
+++..|.+.+|.++|-.+....++ |..+|. .|.++|.+.++++.|++++-++- -+.+. ..+..+..-|.+.+.+
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHH
Confidence 777788888888888777655555 444554 45567777888877776654432 22232 3333445667777777
Q ss_pred hHHHHHHHHHHHcCCCCH
Q 041458 534 ELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 534 ~~a~~~~~~~~~~~~~~~ 551 (568)
=-|.+.|..+...+|.|.
T Consensus 478 yyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 478 YYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHhhhHHHccCCCcc
Confidence 777777777777776643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-12 Score=124.80 Aligned_cols=289 Identities=11% Similarity=0.017 Sum_probs=187.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChHHHHHH
Q 041458 113 KMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG--YPTNTVTYNSLVRGLCMLGNLNQSLQF 190 (568)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (568)
+..+|+..|+.....- .-...+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 5567788887755542 2233555666778888888888888888877642 11245556555543321 112222
Q ss_pred -HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 041458 191 -LDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF 269 (568)
Q Consensus 191 -~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 269 (568)
-+.+.+. -+..+.+|.++...|.-+++.+.|++.|++.++.. +-...+|+.+..-+.....+|.|...|+.......
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2222222 13366788888888888888888888888877652 11566777777777777888888888877765411
Q ss_pred CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 041458 270 EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI 349 (568)
Q Consensus 270 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (568)
+ +-..|..+...|.+.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.++|++++++....+.+ |+..--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 1 22334445666788888888888888877665 456666677777777888888888888887766544 55555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 041458 350 IARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP 411 (568)
Q Consensus 350 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (568)
+..+...+++++|+..++++.+.-+....+.+.....|-+.|+.+.|+.-|--+....++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 66677778888888888888776433333334446677777888888887777766655443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-11 Score=117.50 Aligned_cols=443 Identities=15% Similarity=0.104 Sum_probs=229.8
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 041458 85 QLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGY 164 (568)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 164 (568)
++-.+...|+.|+.++|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3455677899999999999999999999999998 9998887776667777888888877777777665
Q ss_pred CCcHHHHHHHHHHHHhcCChHH---HHHHHHHHHH----CCCC-----------------CCHhhHHHHHHHHHHcCCHH
Q 041458 165 PTNTVTYNSLVRGLCMLGNLNQ---SLQFLDRLIQ----KGLV-----------------PNAFTYSFLLEAAYKERGVH 220 (568)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~----~~~~-----------------~~~~~~~~li~~~~~~~~~~ 220 (568)
.|...+|..|..+|...||... ..+.+..... .|+. ||..+ .+....-.|-++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHH
Confidence 4677788888888888887543 2222222211 1211 12111 111111122222
Q ss_pred HHHHHHHHH------------------------------HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 041458 221 AAMKLLDDI------------------------------IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE 270 (568)
Q Consensus 221 ~a~~~~~~~------------------------------~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 270 (568)
.+.+++..+ ......|++.+|..++..-.-+|+.+.|..++.+|++.|++
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 222222111 11111356666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHH-----------HHHHHHH---
Q 041458 271 PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALK-----------VLDEMVK--- 336 (568)
Q Consensus 271 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-----------~~~~~~~--- 336 (568)
.+..-|-.|+-+ .++..-++.+++-|...|+.|+..|+...+..+...|....+.+ ++..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 665555555443 55555666666666666666666666555544444332211100 0000000
Q ss_pred ----------------------CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CC-ChhhHHH-HHHHHh-
Q 041458 337 ----------------------GRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRC--KP-NEGTYNG-LAMLCG- 389 (568)
Q Consensus 337 ----------------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~~~~-~~~~~~- 389 (568)
.|+.....+|...+ -...+|.-+...++-..+..-.. .+ ++..+.. +..|.+
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 01111111111111 11123333444444333322110 01 0011100 111110
Q ss_pred ---------------------CCCHHHHHHHHHHHhhC----------------CCCC-------ChhhHHHHHHHHHhc
Q 041458 390 ---------------------VGKVQEAFAIIQSLGNK----------------QNSS-------PQEFYKYVITSLCRK 425 (568)
Q Consensus 390 ---------------------~~~~~~a~~~~~~~~~~----------------~~~~-------~~~~~~~li~~~~~~ 425 (568)
.....+..+........ ...+ -...-+.++-.++..
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 00000000111000000 0000 000122333344444
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 426 GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE--YDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 426 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
-+..+++..-+.....-+ ...|..||.-+......+.|..+.++... ..+..|..-+..+.+.+.+.+....+.+
T Consensus 473 ~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 444444433333222111 13567788888888888888888887753 3344566677888888888888888888
Q ss_pred HHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 504 VFQMMIEKGQ-MP-NETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 504 ~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+++++.+.-. .| ...++.-++......|+.+...++.+-+...|..
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 8888876311 22 2455666677777788888777777766665544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-11 Score=105.65 Aligned_cols=288 Identities=15% Similarity=0.116 Sum_probs=225.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
+|+|..|.++..+..+.+..| ...|..-..+--+.|+.+.+-.++.++.+....++...+-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999998877765443 3445556667778899999999999998874455666777778888899999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHH
Q 041458 156 VEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA-------FTYSFLLEAAYKERGVHAAMKLLDD 228 (568)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 228 (568)
.+++.+.+ +.++........+|.+.|++.....++..+.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99888764 457888999999999999999999999999998866554 3566777766666666666667766
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 229 IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
.... .+.++..-..++.-+.++|+.++|.++..+..+++..|+. ...-.+.+-++...-++..++..+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6554 4446666677888889999999999999998888766652 22234566777777777777766553 4456
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+...|.++.++....-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 78889999999999999999999977765 6899999999999999999999999888776443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-11 Score=104.34 Aligned_cols=289 Identities=13% Similarity=0.127 Sum_probs=207.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChhhH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD---ASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a 152 (568)
+.+.+.|..+|-+|++.. +.+..+.-+|.+.|.+.|..++|+.+++.+.++.-.+. ..+.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 566788999999998853 34566677788999999999999999999887521111 12344566678889999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHHcCCHHHHHHHHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAF----TYSFLLEAAYKERGVHAAMKLLDD 228 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~ 228 (568)
.++|..+.+.|. .-..+...|+..|-...+|++|+++-+++.+.+..+..+ .|.-+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999887542 245567889999999999999999999988875544332 344555556667888999999998
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 229 IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
..+...+ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8877322 3444445667888899999999999999888555556677888899999999999999998887653 334
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---CCHHHHHHHHHHHhh
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSE---GKVDLVVKCLDQMFH 371 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~ 371 (568)
..-..+...-....-.+.|...+.+-+.. +|+...+..++..-... |...+-...+..|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44445555445555566666665555444 58888888888765432 334455555555554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-11 Score=108.56 Aligned_cols=415 Identities=12% Similarity=0.033 Sum_probs=255.9
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCC
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPD-VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD-ASSYTYLVNCLCKKGN 148 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 148 (568)
+.+.++|++++|++.+.+.+.. .|+ +..|......|...|+++...+--....+.+ |+ +.++.--..++-..|+
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhcc
Confidence 3467899999999999999885 566 7888899999999999999998888887753 43 3355555567777788
Q ss_pred hhhHHHHHHHHH-hCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-C--CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 041458 149 VGYAMQLVEKME-DYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQ-K--GLVPNAFTYSFLLEAAYKERGVHAAMK 224 (568)
Q Consensus 149 ~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~--~~~~~~~~~~~li~~~~~~~~~~~a~~ 224 (568)
+++|+.=..-.. -.|+. |..+- .++.-..+ ..|..-..+-.. . .+.|......+....+...-..
T Consensus 199 ~~eal~D~tv~ci~~~F~-n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~----- 267 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQ-NASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP----- 267 (606)
T ss_pred HHHHHHhhhHHHHhhhcc-cchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc-----
Confidence 777754222111 11111 11111 11111110 112222222222 1 1334544444444333211000
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHhhhC---CC---CCC------hhHHHHHHHHHHcCCCHHH
Q 041458 225 LLDDIIAKGGKPNLVSYNVLLTGLCK-EGRTEEAIRFFRDLPSK---GF---EPN------VVSYNILLRSLCMEGRWEE 291 (568)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~---~~---~p~------~~~~~~l~~~~~~~g~~~~ 291 (568)
.+...+.+.|...-..+=..+.. ...+..|.+.+.+-... .. ..| ..+...-...+.-.|+.-.
T Consensus 268 ---~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 268 ---LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ---cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 00000000011000000000100 01223333332221110 00 001 1111212222445688889
Q ss_pred HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
|.+-|+..++.... +...|..+..+|....+.++..+.|.+..+.+.. ++.+|..-.+.+.-.+++++|..-|++.+.
T Consensus 345 a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998887533 3334888888999999999999999999887654 777788778888888999999999999887
Q ss_pred CCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----
Q 041458 372 RRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD----- 446 (568)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----- 446 (568)
..+..-...........+.++++++...|++...+.+. .+..|+.....+...++++.|.+.|+..++. .|+
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~ 499 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLII 499 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cccccccc
Confidence 64322222222244566788999999999999988665 5677999999999999999999999998874 333
Q ss_pred --hhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 447 --SYTY--SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 447 --~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..++ -+++..- -.+++..|.+++.+..+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 1122111 238999999999999987655 566899999999999999999999998765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-11 Score=101.98 Aligned_cols=263 Identities=14% Similarity=0.121 Sum_probs=128.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHH
Q 041458 243 VLLTGLCKEGRTEEAIRFFRDLPSKGFEPN---VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLA 319 (568)
Q Consensus 243 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (568)
+|.+.|-+.|..|.|+++.+.+.++.--+. ......|..-|...|-+|.|+++|..+.+.+ ..-......|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 344444444444444444444443210000 1122234444555555555555555555433 223344455555566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSA----ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQE 395 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (568)
...++++|+++-+++.+.+..+.. ..|..+...+....+++.|..++.+..+.+++.-..+..........|+++.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 666666666555555544322211 1122333333344555555555555555443333333333444445555555
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 396 AFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
|.+.++.+.+.++.--..+...+..+|.+.|++++....+..+.+.. +....-..+...-....-.+.|..++.+-..
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 55555555555444334455666667777777777777777666542 2333333333333334444555555544433
Q ss_pred CCCCCChhhHHHHHHHHHc---cCChHHHHHHHHHHHH
Q 041458 476 YDYKPDVDNFNALLLGLCK---SRRTDLSLEVFQMMIE 510 (568)
Q Consensus 476 ~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~ 510 (568)
. +|+...+..+++.-.. .|..++-..+++.|+.
T Consensus 311 r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 311 R--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred h--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 2 4666666666665432 2345555555666654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-10 Score=107.89 Aligned_cols=287 Identities=10% Similarity=-0.027 Sum_probs=227.0
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHH
Q 041458 236 PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILI 315 (568)
Q Consensus 236 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 315 (568)
.+......-.+-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=.++.+.. +....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 35555566667778889999999999998776 34456666667778888888877777777777653 55778899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHH
Q 041458 316 GSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQE 395 (568)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (568)
--|.-.|+..+|.+.|.+...-+.. =...|-.+...|+-.+..|+|+..+..+-+.-+-.....+-....|.+.++.+-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 8888889999999999988765322 335688888999999999999999988877654444445555677888999999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC----CChhhHHHHHHHHHhcCCHHHHHHH
Q 041458 396 AFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY--GFT----PDSYTYSSLIRGLCMEGLIEEALEI 469 (568)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~a~~~ 469 (568)
|...|.+.....+. |+...+.+.......+.+.+|..+|+..... .+. --..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999998876554 6777888877777889999999999877621 111 1344688999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
+++....... +..++.++.-.|...|+++.|++.|.+.+. +.|+..+...++..+..
T Consensus 478 ~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999876555 899999999999999999999999999986 68988887777775554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-10 Score=103.59 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|++.+|.+..++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34444444444444455554444433332 3444444444555555555544444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-09 Score=98.52 Aligned_cols=223 Identities=14% Similarity=0.111 Sum_probs=144.5
Q ss_pred cCChHHHHHHHHHhhhCCCCCC------hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC---HhhHHHHHHHHHhc
Q 041458 251 EGRTEEAIRFFRDLPSKGFEPN------VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT---IVTYNILIGSLAYH 321 (568)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 321 (568)
.|+..+-...|.+..+. +.|. ...|..+.+.|-..|+++.|..+|++..+...+.- ..+|..-..+=.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 44555556666655443 2221 34577788888889999999999988876543211 23444444555567
Q ss_pred CChHHHHHHHHHHHHCCCC-----------------CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 041458 322 GKTDHALKVLDEMVKGRFR-----------------PSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGL 384 (568)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (568)
.+++.|+++.++...-.-. .+...|...++.--..|-++....++++++...+.......|..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7788888887776532111 12234555566556678888888888888888777666666666
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCChhhHHHHHHH--HH
Q 041458 385 AMLCGVGKVQEAFAIIQSLGNKQNSSPQ-EFYKYVITSLCR---KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRG--LC 458 (568)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~ 458 (568)
..+-...-++++.+++++-......|+. ..|+..+.-+.+ ...++.|..+|++..+ |.+|...-+..|+.+ --
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence 6667777888888888887776666665 567777666554 2367889999999888 556554322222222 22
Q ss_pred hcCCHHHHHHHHHHHHh
Q 041458 459 MEGLIEEALEIFVVMEE 475 (568)
Q Consensus 459 ~~g~~~~a~~~~~~m~~ 475 (568)
+.|....|..++++...
T Consensus 598 e~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 598 EHGLARHAMSIYERATS 614 (835)
T ss_pred HhhHHHHHHHHHHHHHh
Confidence 35777778888877653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-09 Score=98.75 Aligned_cols=460 Identities=13% Similarity=0.091 Sum_probs=276.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
..+++...++..+.+++. .+-...+.....-.+...|+-++|........+..+. +.+.|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 345666677777776664 2223333333333455677888888887777765433 56678888777777788888888
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG 234 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 234 (568)
.|......+ +.|...|.-+.-.-++.|+++.....-.+..+.. ......|..+..++.-.|+...|..+.++..+...
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888887753 4467777777777777788887777777776652 22556777777788888888888888888776642
Q ss_pred -CCCHhhHHHHH------HHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC
Q 041458 235 -KPNLVSYNVLL------TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT 307 (568)
Q Consensus 235 -~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 307 (568)
.|+...+.... ....+.|..++|.+.+..-... +.-....-.+-...+.+.+++++|..++..+... .||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 45555444332 2345677778887777665433 1112222234455677888888888888888776 344
Q ss_pred HhhHH-HHHHHHHhcCChHHHH-HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041458 308 IVTYN-ILIGSLAYHGKTDHAL-KVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLA 385 (568)
Q Consensus 308 ~~~~~-~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 385 (568)
...|. .+..++.+.-+.-++. .+|....+.- +.....-..=+.......-.+..-+++....+.|+.+--.....+.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy 330 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY 330 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH
Confidence 44444 4444444333333343 5555554431 1111111111111112222344455666666666554322222211
Q ss_pred HHHh-CCCHHH-HHHHHHHHhhCC----------CCCChhhHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-hhH
Q 041458 386 MLCG-VGKVQE-AFAIIQSLGNKQ----------NSSPQEFYK--YVITSLCRKGKTYQAFQLLYEMTKYGFTPDS-YTY 450 (568)
Q Consensus 386 ~~~~-~~~~~~-a~~~~~~~~~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 450 (568)
-.-+ ..-.++ +..+...+...+ -+|....|+ .++..+-+.|+++.|...++..+.. .|+. .-|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHH
Confidence 1100 000011 111111121111 133444444 5677888999999999999998875 5553 456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC------CHHHHHHH-
Q 041458 451 SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP------NETTYTIL- 523 (568)
Q Consensus 451 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p------~~~~~~~l- 523 (568)
..=...+.++|++++|..++++..+.+.. |...-..-+.-..++++.++|.++.....+.|... -.-.|-.+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 66668899999999999999999876533 55554466677788999999999999888876411 11233333
Q ss_pred -HHHHHhcCChhHHHHHHHHHHH
Q 041458 524 -VEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 524 -l~~~~~~g~~~~a~~~~~~~~~ 545 (568)
..+|.+.|++.+|.+=+..+.+
T Consensus 488 ~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHH
Confidence 3567788888777766655544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-08 Score=89.47 Aligned_cols=425 Identities=13% Similarity=0.106 Sum_probs=261.1
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 151 (568)
++.+-|++++|+..+..+.+. ..++...+..|.-.+.-.|.+.+|..+-....+ ++..-..|+..--+.++-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHH
Confidence 456789999999999987765 455666777777677778899999888776543 33334445555567777666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE-AAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~ 230 (568)
-....+.+.+ ...---+|.+..-..-.+++|++++.+.... .|+-...|.-+. .|.+..-++.+.++++-.+
T Consensus 140 ~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 6666655554 2223334444444445678899999888765 344444454443 4567777788888887777
Q ss_pred HcCCCCCHhhHHHHHHHHHh--cCCh---------------------------------HHHHHHHHHhhhCCCCCChhH
Q 041458 231 AKGGKPNLVSYNVLLTGLCK--EGRT---------------------------------EEAIRFFRDLPSKGFEPNVVS 275 (568)
Q Consensus 231 ~~~~~~~~~~~~~ll~~~~~--~g~~---------------------------------~~A~~~~~~~~~~~~~p~~~~ 275 (568)
+. .+.+....|.......+ +|+. +.|++++-.+.+. -+..
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEA 287 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEA 287 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHh
Confidence 65 33344455544433333 2222 1122222111111 1122
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCC-cccHH
Q 041458 276 YNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG-------KTDHALKVLDEMVKGRFRPS-AASYN 347 (568)
Q Consensus 276 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~-~~~~~ 347 (568)
--.|+-.|.+.++..+|..+.+++.. .++.-|..-.-.+...| ...-|.+.|.-.-+.+..-| +..-.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 23455568889999999998887742 22322322222222222 23456666665555544333 33445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041458 348 PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK 427 (568)
Q Consensus 348 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (568)
++...+.-..++++++.+++.+..--...|...++...+.+..|.+.+|.++|-.+....++.+......+..+|.+++.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 66667777788999999998888877788888888899999999999999999888776665444444456678889999
Q ss_pred hhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 041458 428 TYQAFQLLYEMTKYGFTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQ 506 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 506 (568)
++.|..++-++. -..+..+. ..+...|.+++.+--|-+.|+.+... .|+++.|. |+-....-+|.
T Consensus 444 P~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f~ 509 (557)
T KOG3785|consen 444 PQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLFR 509 (557)
T ss_pred chHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHHH
Confidence 999888775543 22233333 34456788889988888899888765 56666664 33333445555
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 041458 507 MMIEKGQMP-NETTYTILVEGIAHQDE 532 (568)
Q Consensus 507 ~m~~~g~~p-~~~~~~~ll~~~~~~g~ 532 (568)
.+......| ......-++..+...++
T Consensus 510 ~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 510 QLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred HHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 554432222 23445555555555443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-08 Score=94.92 Aligned_cols=434 Identities=13% Similarity=0.065 Sum_probs=282.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
|..++..| ..+++...+.+.+.+.+. .+-...+.....-.+...|+-++|........+.. ..+.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 34444444 557888888888888874 22234444444445667789999999888777643 4478899999888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRF 260 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 260 (568)
..++++|.+.|......+ +.|...|.-+--.-++.++++........+.+. .+.....|..+..++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998875 336667776666667788888777777777665 223556788888888999999999999
Q ss_pred HHHhhhCCC-CCChhHHHHHHH------HHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 261 FRDLPSKGF-EPNVVSYNILLR------SLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 261 ~~~~~~~~~-~p~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
.++..+... .|+...+.-... .....|..++|.+.+..-... +......-..-...+.+.++.++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 999877642 355555543322 345678888888888665433 122223334556778899999999999999
Q ss_pred HHHCCCCCCcccHHHHHH-HHHhcCCHHHHH-HHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 041458 334 MVKGRFRPSAASYNPIIA-RLCSEGKVDLVV-KCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP 411 (568)
Q Consensus 334 ~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (568)
++..+ ||..-|...+. ++.+..+.-++. .+|....+.-+.........+.......-.+..-..+....++|+++
T Consensus 245 Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~- 321 (700)
T KOG1156|consen 245 LLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS- 321 (700)
T ss_pred HHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc-
Confidence 99874 66666665554 443333333344 55655554432222221111222222222333444555556665543
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHH----CC----------CCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTK----YG----------FTPDSYTY--SSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
++..+..-|-.....+--.++...+.. .| -+|....| -.++..+-+.|+++.|..+++...+
T Consensus 322 --vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 322 --VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred --hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 233333333221111111111111111 11 13444444 4566778899999999999999987
Q ss_pred CCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 476 YDYKPD-VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 476 ~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+ .|+ ++.|..-.+.+...|++++|..++++..+.+ .||..+=.--..-..++.+.++|.+++....+.|.
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5 333 4456666788999999999999999999864 55665555666677789999999999998888775
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-08 Score=95.73 Aligned_cols=415 Identities=14% Similarity=0.091 Sum_probs=234.8
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhhHH
Q 041458 129 IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP-NAFTYS 207 (568)
Q Consensus 129 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~ 207 (568)
+.-|...|..+.-+....|+++.+-+.|++....- -.....|+.+...|...|.-..|..+++.-......| |...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 33466666666666667777777777776655431 2245566677777777777667777666654432223 233333
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHc--CC--CCCHhhHHHHHHHHHhc----C-------ChHHHHHHHHHhhhCCCCC
Q 041458 208 FLLEAAYK-ERGVHAAMKLLDDIIAK--GG--KPNLVSYNVLLTGLCKE----G-------RTEEAIRFFRDLPSKGFEP 271 (568)
Q Consensus 208 ~li~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~----g-------~~~~A~~~~~~~~~~~~~p 271 (568)
..-..|.+ .+..++++.+-.+++.. +. ......|-.+.-+|... . ...++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 33333333 35555555555555442 11 11233344444444321 1 123555556655544322
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 041458 272 NVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIA 351 (568)
Q Consensus 272 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 351 (568)
|......+.--|+..++++.|++..++..+.+-..+...|..|.-.+...+++.+|+.+.+.....- .-|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 2222222333455666677777777776666445566667766666677777777777766655431 111222222233
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHH---HH----HHHhCCCHHHHHHHHHH-----------------Hhh
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRC--KPNEGTYNG---LA----MLCGVGKVQEAFAIIQS-----------------LGN 405 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~---~~----~~~~~~~~~~a~~~~~~-----------------~~~ 405 (568)
.-...++.+++......++..-- .+-..+..- .. .....++..++...... +..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 33345666666666655542100 000000000 00 00000111111111111 010
Q ss_pred CCCC--CC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041458 406 KQNS--SP------QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD 477 (568)
Q Consensus 406 ~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 477 (568)
.... |+ ...|......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0111 11 1235566777888888999988888777642 2244566666677778899999999998888765
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 478 YKPDVDNFNALLLGLCKSRRTDLSLE--VFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 478 ~~p~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+. ++....++...+.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|....+....
T Consensus 715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 44 66788889999999998888877 999999864 458899999999999999999999999988887766
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-10 Score=110.66 Aligned_cols=245 Identities=20% Similarity=0.260 Sum_probs=145.5
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 119 KVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG 198 (568)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 198 (568)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35567788899999999999999999999999998 9999988888889999999999999999988776
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHH----cCCC-CCHhh-------------HHHHHHHHHhcCChHHH
Q 041458 199 LVPNAFTYSFLLEAAYKERGVHA---AMKLLDDIIA----KGGK-PNLVS-------------YNVLLTGLCKEGRTEEA 257 (568)
Q Consensus 199 ~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~----~~~~-~~~~~-------------~~~ll~~~~~~g~~~~A 257 (568)
.|-+.||+.+..+|...||+.. +.+.+..+.. .|+- |.... -...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999754 3332222221 1211 00000 01122233334555555
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 258 IRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 258 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
++++..+...... . ....++.-+... ....+++....+...-.|+..++..++..-...|+.+.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5555444322100 0 000012211111 1122222222221111355566666666666666666666666666666
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 338 RFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG 383 (568)
Q Consensus 338 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (568)
|++.+..-|..++-+ .++...+..++.-|...|+.|+..|+.-
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 655555555555433 4555555555555666666665555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-08 Score=93.13 Aligned_cols=135 Identities=19% Similarity=0.111 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHccCCh
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFV--------VMEEYDYKPDVDNFNALLLGLCKSRRT 498 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~ 498 (568)
...+|.+++...-+....-..++....+.....+|+++.|.+++. .+.+.+..|- +...++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 456666666666554222223445556666677888888888877 4554444443 344555666777776
Q ss_pred HHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 499 DLSLEVFQMMIEK--GQMPNE----TTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 499 ~~a~~~~~~m~~~--g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
+.|..++.+.++. .-.+.. .++.-+...-.++|+-++|..+++++.+.++.+.+++..++-.|+.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 6677776666541 112222 2333334444556888888888888888888888888887777764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-07 Score=88.93 Aligned_cols=401 Identities=11% Similarity=0.090 Sum_probs=233.5
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY-GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
+..|...+....++|++...+..|+..... .+......|...+......+-++.+..++++.++. ++..-.-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 456777777888888888888888887653 22223456888888888888888888888888754 4444667778
Q ss_pred HHHHcCCHHHHHHHHHHHHHc------CCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHHhhhCCCCCC--hhHHHHHH
Q 041458 212 AAYKERGVHAAMKLLDDIIAK------GGKPNLVSYNVLLTGLCKEGRT---EEAIRFFRDLPSKGFEPN--VVSYNILL 280 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~p~--~~~~~~l~ 280 (568)
.+++.+++++|.+.+...+.. ..+.+-..|..+-+...++-+. -....+++.+... -+| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 888888888888888776543 2234555666665555554332 2233444444433 233 35678888
Q ss_pred HHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC----------------C------hHHHHHHHHHHHHCC
Q 041458 281 RSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG----------------K------TDHALKVLDEMVKGR 338 (568)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~------~~~a~~~~~~~~~~~ 338 (568)
+.|.+.|.+++|..++++.... ..++.-|..+.+.|++.. + ++-...-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 8888888888888888887654 223333444444443211 1 112223333333221
Q ss_pred C-----------CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-------ChhhHHHHHHHHhCCCHHHHHHHH
Q 041458 339 F-----------RPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKP-------NEGTYNGLAMLCGVGKVQEAFAII 400 (568)
Q Consensus 339 ~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~ 400 (568)
. +-++..|..-+. +..|+..+-...+.++++. +.| ..........|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0 112222322222 2245566666666666543 122 111122256777788888888888
Q ss_pred HHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----------------ChhhHHHHHHHHHhc
Q 041458 401 QSLGNKQNSSP---QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-----------------DSYTYSSLIRGLCME 460 (568)
Q Consensus 401 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------------~~~~~~~l~~~~~~~ 460 (568)
++..+...+.- ..+|..-...-.++.+++.|+++.+......-.| +...|..+++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 88877654432 2445555566667778888888877765321111 122345555555566
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCChhHH
Q 041458 461 GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE-TTYTILVEGIAH---QDELELS 536 (568)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g~~~~a 536 (568)
|-++....+++++.+..+. ++.........+-.+..++++.+++++-+..=-.|+. ..|+..+..+.+ .-+.+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 7777788888877765544 3333333333344555666677666665543112332 455555544433 2346667
Q ss_pred HHHHHHHHH
Q 041458 537 AEVLKELQL 545 (568)
Q Consensus 537 ~~~~~~~~~ 545 (568)
+.+|++.++
T Consensus 570 RdLFEqaL~ 578 (835)
T KOG2047|consen 570 RDLFEQALD 578 (835)
T ss_pred HHHHHHHHh
Confidence 777777776
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-10 Score=99.19 Aligned_cols=241 Identities=12% Similarity=0.042 Sum_probs=185.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHH
Q 041458 136 YTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTY-SFLLEAAY 214 (568)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~ 214 (568)
-+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-+.|.+..+++.|+.++.+-.+. .|-.+|| .-..+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 356778889999999999888887764 366778888889999999999999999888765 4444444 45566777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHH
Q 041458 215 KERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANE 294 (568)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 294 (568)
..++.++|.++++...+. .+.++.....+...|.-.++.+.|+.+|+++.+.|+. +...|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 788899999999888776 3346666667777888888999999999999888877 77888888888888888998888
Q ss_pred HHHHhccCCCCcC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 041458 295 LLAEMDGGDRSPT--IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 295 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
-|++....--.|+ ..+|..+.......|++..|.+.|+-.+..+.. ....++.+.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8888765432232 456777888888889999999999888876543 5567777777778889999999999888766
Q ss_pred CCCCChhhHHH
Q 041458 373 RCKPNEGTYNG 383 (568)
Q Consensus 373 ~~~~~~~~~~~ 383 (568)
.+.--..++|.
T Consensus 459 ~P~m~E~~~Nl 469 (478)
T KOG1129|consen 459 MPDMAEVTTNL 469 (478)
T ss_pred Cccccccccce
Confidence 54444444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-08 Score=98.50 Aligned_cols=290 Identities=16% Similarity=0.162 Sum_probs=185.5
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKK----- 146 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 146 (568)
.+...|++++|+..++.-... +.............+.+.|+.++|..++..++++++. |...|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 445678999999888775443 3333444556677788889999999999999888632 444555555555222
Q ss_pred CChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 041458 147 GNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNL-NQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKL 225 (568)
Q Consensus 147 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 225 (568)
.+.+...++++++... . |...+...+.-.+..-..+ ..+...+..+...|++ .+|+.+-..|......+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~-y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK-Y-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh-C-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 2456677788877654 2 2222222222222221222 2445556666777754 3555555556655555555566
Q ss_pred HHHHHHc----C----------CCCCHh--hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCC
Q 041458 226 LDDIIAK----G----------GKPNLV--SYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGR 288 (568)
Q Consensus 226 ~~~~~~~----~----------~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 288 (568)
+..+... + -+|+.. ++.-+...|-..|++++|++++++.++. .|+ +..|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 6655432 1 123333 3355566777888888888888888776 344 5677777888888888
Q ss_pred HHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCccc------H--HHHHHHHHhcCCHH
Q 041458 289 WEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAAS------Y--NPIIARLCSEGKVD 360 (568)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~~~~~ 360 (568)
+.+|.+.++.....+ ..|-..-+..+..+.+.|++++|.+++....+.+..|.... | .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888888888887776 44666667777788888888888888888877654322211 1 23345777888888
Q ss_pred HHHHHHHHHhh
Q 041458 361 LVVKCLDQMFH 371 (568)
Q Consensus 361 ~a~~~~~~~~~ 371 (568)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88777776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-07 Score=85.21 Aligned_cols=303 Identities=12% Similarity=0.075 Sum_probs=214.9
Q ss_pred hcCChHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHH
Q 041458 250 KEGRTEEAIRFFRDLPSK-GFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHAL 328 (568)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 328 (568)
-.++...|...+-.+... -++-|+.....+.+++...|+.++|...|++....+ +-+........-.+.+.|+.+...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHH
Confidence 344444444444333222 245577788889999999999999999998876543 112222233334456778888887
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 041458 329 KVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQN 408 (568)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (568)
.+...+.... +-....|-.-........++..|+.+-++.++.....-....--...+...++.++|.-.|+......+
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 7777766532 112333433344555677888888888888776433333322226677888999999999998776543
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCC-hhhH
Q 041458 409 SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLI-RGLCM-EGLIEEALEIFVVMEEYDYKPD-VDNF 485 (568)
Q Consensus 409 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~~~ 485 (568)
. +..+|..++..|...|++.+|.-+-+...+. +..+..+...+. ..|.. -..-++|.++++...+. .|+ ....
T Consensus 366 ~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 366 Y-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred h-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 3 7789999999999999999999888776654 334555555552 33432 23457899999887764 344 3456
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 486 NALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 486 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
+.+...+...|+.++++.++++... ..||...-+.|.+.+...+.+.+|...|...+..+|.+..+.+.+-+.
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 6778889999999999999999987 489999999999999999999999999999999999998887766554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-10 Score=113.35 Aligned_cols=269 Identities=12% Similarity=0.100 Sum_probs=189.3
Q ss_pred CCCHHhHHHHHHHHH-----hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 041458 95 KPDVVQATNLLYDLC-----KANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK---------KGNVGYAMQLVEKME 160 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 160 (568)
..+...|...+.+.. ..+.+++|++.|++..+.... +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345555555555532 234689999999999987432 45566666555442 244789999999998
Q ss_pred hCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhh
Q 041458 161 DYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240 (568)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (568)
+.. |.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 874 4578888889899999999999999999999874 335677888888999999999999999999887433 2333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...++++.... +.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 344455567789999999999998765322245557778888899999999999999876542 3344455666667777
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 041458 321 HGKTDHALKVLDEMVKG-RFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 321 ~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
.| ++|...++.+.+. ...+....+. -..+.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLL--PLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHH--HHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4777777776653 1223333333 3345556676666655 7776653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-10 Score=114.57 Aligned_cols=252 Identities=12% Similarity=0.016 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHH---------hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 288 RWEEANELLAEMDGGDRSPTIVTYNILIGSLA---------YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
.+++|...|++..+.. +.+...|..+..+|. ..++.++|...+++.++.++. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 3566777777766553 223444544444333 223466777777777765432 45556666666677777
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM 438 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (568)
+++|...++++++.++......+.....+...|++++|...+++..+.++.... .+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhccCHHHHHHHHHHH
Confidence 777777777777765444344444456666777777777777777766554222 2233344456678888888888887
Q ss_pred HHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCC
Q 041458 439 TKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK-GQMPN 516 (568)
Q Consensus 439 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 516 (568)
.+.. .| +...+..+..++...|++++|...+.++...... +....+.+...|...| ++|...++.+.+. ...|.
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 6543 23 3444666777778888888888888876644221 3444555666666666 4677766666552 11232
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 517 ETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
...+ +-..+.-.|+.+.+..+ +++.+.+..
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 2233 33345556777766655 777766544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-08 Score=92.70 Aligned_cols=449 Identities=13% Similarity=0.097 Sum_probs=257.6
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
+.+..+|++++|.+....++..+ +.+...+..=+-++.+.+++++|+.+.+.-.... .-+...|. =..+..+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fE-KAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFE-KAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHH-HHHHHHHcccHH
Confidence 34456899999999999998876 5567777777778899999999995554322110 00111111 123445788999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
+|+..++...+ .+..+...-...+-+.|++++|+.+|+.+.+.+..- |...-..++.+-.. -.+. +.+
T Consensus 97 ealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q-- 165 (652)
T KOG2376|consen 97 EALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ-- 165 (652)
T ss_pred HHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH--
Confidence 99999883332 234466666778889999999999999998764321 11111112211111 0111 122
Q ss_pred HHcCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-------------CCCCh-hHHHHHHHHHHcCCCHHHHH
Q 041458 230 IAKGGKP--NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG-------------FEPNV-VSYNILLRSLCMEGRWEEAN 293 (568)
Q Consensus 230 ~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------------~~p~~-~~~~~l~~~~~~~g~~~~a~ 293 (568)
.....| +-..+......+...|++.+|+++++...+.+ +.... .+-..|..++-..|+-.+|.
T Consensus 166 -~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 -SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred -hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 221222 11222223456678999999999998883221 00011 11233555677889999999
Q ss_pred HHHHHhccCCCCcCHhhH----HHHHHHHHhcCChH-HHHHHHHHHHHCCC----------CCCcccH-HHHHHHHHhcC
Q 041458 294 ELLAEMDGGDRSPTIVTY----NILIGSLAYHGKTD-HALKVLDEMVKGRF----------RPSAASY-NPIIARLCSEG 357 (568)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~-~a~~~~~~~~~~~~----------~~~~~~~-~~li~~~~~~~ 357 (568)
.++..+++.. ++|.... |.|+..-....-++ .++..++....... ....... +.++..| .+
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tn 321 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TN 321 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 9999988776 4444222 22222211111111 12222222211100 0011111 1122222 23
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHH--HHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041458 358 KVDLVVKCLDQMFHRRCKPNEGTYNGL--AMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLL 435 (568)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 435 (568)
.-+.+.++...... ..|....-..+ ...++......+..++....+..+.....+.-.++......|+++.|++++
T Consensus 322 k~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 322 KMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33334433332221 12222222222 222333467778888887777766655666777788888999999999999
Q ss_pred H--------HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----hhhHHHHHHHHHccCChHHH
Q 041458 436 Y--------EMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY--DYKPD----VDNFNALLLGLCKSRRTDLS 501 (568)
Q Consensus 436 ~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~a 501 (568)
. .+.+.+..|- +...+...+.+.++-+.|..++...... .-.+. ..++.-++..-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 5555555554 4456667777777766666666655421 00112 22333444455677999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
..+++++.+. .++|..+...++.+|.+. +.+.|..+-+++
T Consensus 478 ~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999986 377899999999999875 678777766654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-10 Score=99.80 Aligned_cols=201 Identities=11% Similarity=0.019 Sum_probs=133.5
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAML 387 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (568)
...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------ 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------------ 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------
Confidence 45566666777777777777777777665432 23445555556666666666666666665544222
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 466 (568)
+...+..+...+...|++++|.+.+++..+....+ ....+..+...+...|++++|
T Consensus 98 -----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 98 -----------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred -----------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 23345555666677777777777777776532212 234566677777888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
.+.+++..+.... +...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 155 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888887765333 4567777888888888888888888888775 3445666667777777888888888887777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-09 Score=98.78 Aligned_cols=198 Identities=16% Similarity=0.124 Sum_probs=113.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRG 177 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 177 (568)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455666677777777777777777776653 2245566666667777777777777777766643 3345566666667
Q ss_pred HHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGL-VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
+...|++++|.+.+++..+... ......+..+...+...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665321 1123344445555555566666666665555442 1233444455555555555555
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555443 1223334444444555555555555554444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=100.25 Aligned_cols=230 Identities=11% Similarity=0.076 Sum_probs=147.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 041458 172 NSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251 (568)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (568)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+++.|+.++.+-++. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888777665 566677777788888888888888888777765 333444445566677777
Q ss_pred CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 252 GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVL 331 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (568)
++.++|.++|+...+.. ..++.....+...|.-.++++-|+..++++...|+ .+...|+.+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77888888887776552 22555555566667777777777777777777774 35667777777777777777777777
Q ss_pred HHHHHCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 041458 332 DEMVKGRFRPS--AASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNK 406 (568)
Q Consensus 332 ~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 406 (568)
.+.+..-..|+ ..+|..+.......|++..|.+.|+-.+..+........|....-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77665432222 2345555555556666666666666665554333333333333344445555555444444433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-12 Score=80.17 Aligned_cols=49 Identities=43% Similarity=1.059 Sum_probs=25.2
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 041458 236 PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLC 284 (568)
Q Consensus 236 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 284 (568)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-09 Score=101.11 Aligned_cols=243 Identities=19% Similarity=0.139 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccC-----CC-CcCHhh-HHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGG-----DR-SPTIVT-YNILIGSLAYHGKTDHALKVLDEMVKG-----RFR- 340 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~- 340 (568)
.+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|++++.. |-.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666667776666666654332 10 222222 234666778888888888888877642 211
Q ss_pred C-CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh-hhHHHH
Q 041458 341 P-SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ-EFYKYV 418 (568)
Q Consensus 341 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 418 (568)
| -..+++.|..+|.+.|++++|...++.+. ++++...... .+.+ ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al---------------------------~I~~~~~~~~-~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERAL---------------------------EIYEKLLGAS-HPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHH---------------------------HHHHHhhccC-hHHHHHHHHHH
Confidence 1 22345556667888888888887776543 3333311111 1111 235566
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-Chhh
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKY---GFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DY--KP-DVDN 484 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~--~p-~~~~ 484 (568)
+..++..+++++|..++.+..+. -+.++ ..+++.|...|.+.|++++|.++++.+... +. .+ ....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 67777788888888887765431 12222 357889999999999999999999988631 11 11 2446
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH----CCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 485 FNALLLGLCKSRRTDLSLEVFQMMIE----KGQ-MP-NETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 485 ~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
++.|...|.+.++..+|.++|.+... .|. .| ...+|..|...|...|+++.|.++.+.+.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77888899999999999999887654 222 23 34788999999999999999999998876
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=79.70 Aligned_cols=49 Identities=29% Similarity=0.779 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 041458 166 TNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAY 214 (568)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 214 (568)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-07 Score=90.32 Aligned_cols=409 Identities=14% Similarity=0.093 Sum_probs=266.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCcHHH
Q 041458 92 KGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG-YPTNTVT 170 (568)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 170 (568)
..+..|...|..+.-++.+.|+++.+.+.|++....-+ -....|..+...|...|.-..|..+++.-.... -+++...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 34556888999999999999999999999999886543 256789999999999999999999998766543 2334444
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCC
Q 041458 171 YNSLVRGLC-MLGNLNQSLQFLDRLIQK--GL--VPNAFTYSFLLEAAYKE-----------RGVHAAMKLLDDIIAKGG 234 (568)
Q Consensus 171 ~~~li~~~~-~~g~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~ 234 (568)
+-..-..|. +.+..++++....+.... +. ......|..+.-+|... ....++.+.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444444 446777777777776652 11 12334444444444321 123577888888877644
Q ss_pred -CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHH
Q 041458 235 -KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNI 313 (568)
Q Consensus 235 -~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (568)
.|++..| +.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....- ..|......
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 3433333 333567889999999999999888667789999999999999999999999988765431 111111111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH---------------------C-------CCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVK---------------------G-------RFRPSAASYNPIIARLCSEGKVDLVVKC 365 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~---------------------~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~ 365 (568)
-+..-...++.++++.....++. . ...-.+.++..+....... ...+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcccc
Confidence 11111223444443332222110 0 1111122222222211111 1100000
Q ss_pred HHHHhhCC--CCCChhhH-------HHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041458 366 LDQMFHRR--CKPNEGTY-------NGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLY 436 (568)
Q Consensus 366 ~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (568)
.. +.... ..|+...+ .....+.+.+..++|...+.+.....+. ....|......+...|..++|.+.|.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 11111 12332222 1256777788999998888887765432 44556666677888999999999999
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 437 EMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALE--IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 437 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
..... .|+ .....++...+.+.|+..-|.. ++..+.+.++. +...|..+...+-+.|+.+.|.+.|+...+.
T Consensus 709 ~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 88864 555 4578899999999998877777 99999988776 8999999999999999999999999998874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.1e-08 Score=95.37 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
+..+...|...|+.++|++++++.++. .|+ ...|..-...+-+.|++++|.+.++.....+.. |-..-+..+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 355567777888888999988888876 454 567777888888899999999988888877655 7777777788888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCH------HHH--HHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPNE------TTY--TILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~~------~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
++|++++|.+++....+.+..|-. ..| .....+|.+.|++..|.+.+..+.+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 889999998888888776544422 122 23456788888888888777766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.7e-08 Score=81.42 Aligned_cols=210 Identities=13% Similarity=-0.018 Sum_probs=139.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLC 388 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (568)
.+...|.-.|.+.|+...|..-+++.++..+. +..+|..+...|-+.|+.+.|.+.|++.+...+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------------- 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------------- 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-------------
Confidence 34555666777888888888888887776533 5566777777777777777777777777765433
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
+..+.|.....+|..|++++|.+.|++....-.-+ -..+|..+..+..+.|+.+.|.
T Consensus 102 ----------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 102 ----------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred ----------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence 23335555556666666666666666665432111 2346666666667777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
++|++..+.... .......+.....+.|++-.|..+++.....+. ++...+...|+.-...|+.+.+-++=..+.+..
T Consensus 160 ~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 160 EYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 777777765443 455666677777777777777777777776643 677777777777777777777777777777777
Q ss_pred CCCHHHHHH
Q 041458 548 VVSESAVER 556 (568)
Q Consensus 548 ~~~~~~~~~ 556 (568)
|.+.+....
T Consensus 238 P~s~e~q~f 246 (250)
T COG3063 238 PYSEEYQTF 246 (250)
T ss_pred CCcHHHHhH
Confidence 666554433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-08 Score=80.90 Aligned_cols=208 Identities=12% Similarity=0.030 Sum_probs=161.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 353 (568)
.+...|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|+.+.|.+.|++.++.... +..+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 456678888999999999999999999886 567889999999999999999999999999987644 667788888888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041458 354 CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 433 (568)
|..|++++|...|++......-+ ....+|..+..+..+.|+.+.|..
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~---------------------------------~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYG---------------------------------EPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCC---------------------------------CcchhhhhhHHHHhhcCCchhHHH
Confidence 99999999999998887642111 123456666667777888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 041458 434 LLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 513 (568)
.|++.++.... ...+...+.......|++..|..+++.....+. ++..+....|..--+.|+.+.+-++=.++...
T Consensus 161 ~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~-- 236 (250)
T COG3063 161 YLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL-- 236 (250)
T ss_pred HHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 88887775322 345667777888888888888888888776655 67887777788888888888887777666653
Q ss_pred CCCHHHH
Q 041458 514 MPNETTY 520 (568)
Q Consensus 514 ~p~~~~~ 520 (568)
-|...-+
T Consensus 237 fP~s~e~ 243 (250)
T COG3063 237 FPYSEEY 243 (250)
T ss_pred CCCcHHH
Confidence 4544444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-08 Score=97.26 Aligned_cols=236 Identities=17% Similarity=0.141 Sum_probs=121.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-C
Q 041458 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDY-----GY-PTNTV-TYNSLVRGLCMLGNLNQSLQFLDRLIQK-----GLV-P 201 (568)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-~ 201 (568)
+...+...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555555666666665555554432 10 11221 2233555556666666666666655432 211 1
Q ss_pred -CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHHhcCChHHHHHHHHHhhhC---CCC
Q 041458 202 -NAFTYSFLLEAAYKERGVHAAMKLLDDIIAK-----GG-KPNL-VSYNVLLTGLCKEGRTEEAIRFFRDLPSK---GFE 270 (568)
Q Consensus 202 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~ 270 (568)
-..+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.+...++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1234444555566666666665555544321 11 1122 22444555566666666666666554321 111
Q ss_pred CC----hhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CC---CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH---
Q 041458 271 PN----VVSYNILLRSLCMEGRWEEANELLAEMDGG----DR---SPTIVTYNILIGSLAYHGKTDHALKVLDEMVK--- 336 (568)
Q Consensus 271 p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 336 (568)
++ ..+++.|...|...|++++|.++++++... +. .-....++.+...|.+.++..+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 345666777777777777777776665431 11 11234456666666666666666666655332
Q ss_pred -CCC--CCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 337 -GRF--RPSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 337 -~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
.|+ +-...+|..|...|.+.|+++.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 1123456666677777777777777766665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-07 Score=88.30 Aligned_cols=219 Identities=16% Similarity=0.089 Sum_probs=150.6
Q ss_pred cCChHHHHHHHHHHHhCCC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 041458 76 DHKLNDAFLQLERMVSKGH-KP--DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 152 (568)
.+..+.++..+.+++.... .| ....|..+...+.+.|+.+.|...|+...+... .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 4667788888888886432 11 245577788888999999999999999998753 3678899999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
.+.|++..+.. |.+..+|..+..++...|++++|.+.|++..+.. |+..............++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998753 3357788888888999999999999999998763 33322222222334567889999999765543
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh---CCCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC
Q 041458 233 GGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS---KGFE---PNVVSYNILLRSLCMEGRWEEANELLAEMDGGD 303 (568)
Q Consensus 233 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 303 (568)
. .++...+ .+. ....|+..++ +.+..+.+ ..+. .....|..+...+.+.|++++|...|++....+
T Consensus 195 ~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2332222 222 2334555443 23333332 1111 123467778888888888888888888887665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-07 Score=87.66 Aligned_cols=396 Identities=12% Similarity=0.111 Sum_probs=234.1
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-C-------C-CCCHhhHHHHHH
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-G-------I-IPDASSYTYLVN 141 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~li~ 141 (568)
.-|...|+.+.|.+..+-+. +...|..|.+.|.+.++++-|.-.+..|... | . .++ ..-.....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 34566799999988776553 3467999999999999999988777666532 1 1 122 22222333
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 041458 142 CLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHA 221 (568)
Q Consensus 142 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 221 (568)
.....|.+++|+.+|.+-++ |..|=+.|-..|.|++|+++-+.--.. . -..||......+-..++.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHH
Confidence 44577899999999988876 445566777889999999987653221 1 22455555666666778888
Q ss_pred HHHHHHHH----------HHcC---------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHH
Q 041458 222 AMKLLDDI----------IAKG---------GKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRS 282 (568)
Q Consensus 222 a~~~~~~~----------~~~~---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 282 (568)
|++.|++. +... -..|...|.-....+-..|+.+.|+.+|..... |-.+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 88777653 1110 012333444444444556777777777776552 4566777
Q ss_pred HHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-----
Q 041458 283 LCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG----- 357 (568)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----- 357 (568)
.|-.|+.++|-++-++-. |......|.+.|-..|++.+|...|-+... +...|..|-.++
T Consensus 948 ~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred EeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHH
Confidence 777888888887776532 666777788888888888888888876543 222232222221
Q ss_pred ----------CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHH--------H--hhCCCCCChhhHHH
Q 041458 358 ----------KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQS--------L--GNKQNSSPQEFYKY 417 (568)
Q Consensus 358 ----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~--~~~~~~~~~~~~~~ 417 (568)
+.-.|-.+|++.- ...-.++..|-+.|.+..|+++--+ + .......|+...+-
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 1222223333221 1111224556666666666654221 1 12233445566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCh----hhHHHHHHHH
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME-EYDYKPDV----DNFNALLLGL 492 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~----~~~~~li~~~ 492 (568)
-.+.++.+.++++|..++....+ |..-+..| ...++.-..++-+.|. ..+-.|+. .....+...|
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 66667777777777777765543 22333333 3333334444444444 22223333 3355667788
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELEL 535 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 535 (568)
.+.|.+..|.+-|.++-++ ...++++.++|+.++
T Consensus 1156 ~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 8888888887777665432 123455666666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-07 Score=85.21 Aligned_cols=436 Identities=13% Similarity=0.029 Sum_probs=231.4
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD-ASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 149 (568)
+..+..|+++.|+..|-+.+...+ +|.+.|..-..+|++.|++++|++=-.+.++. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 345677888888888888777644 48888888888888888888887766666554 344 34677777788888888
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-----HHHHcCCHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE-----AAYKERGVHAAMK 224 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~ 224 (568)
++|+..|.+-.+.. +.|...++-+..++. .+.+. +.. .-++..|..+.. .+.....+. .
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~---~ 150 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV---K 150 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---H
Confidence 88888888877652 345666666666661 11111 111 112333332221 111111111 1
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH-----hhhC-------CCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 225 LLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRD-----LPSK-------GFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-----~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
+++.+. . ++... ..|..-..+..+.-.+.. +... +..|.. -.....-..++..+-
T Consensus 151 ~l~~~~-~----~p~~l----~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 151 ILEIIQ-K----NPTSL----KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCK----QEHNGFPIIEDNTEE 217 (539)
T ss_pred HHHHhh-c----CcHhh----hcccccHHHHHHHHHHhcCccccccccccccCCCCCCccc----ccCCCCCccchhHHH
Confidence 111111 1 11110 111111111111111110 0001 111210 000000000000000
Q ss_pred HHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 041458 293 NELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
.+ ...-..-...+.+...+..+++.|++-+....+.. -+..-++....+|...|.+..+....+...+.
T Consensus 218 ~~---------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 218 RR---------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred HH---------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00 00012234456666667777777777777766654 24444555556677777777666666665554
Q ss_pred CCCCChhhHHH--------HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 041458 373 RCKPNEGTYNG--------LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT 444 (568)
Q Consensus 373 ~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 444 (568)
|...- ..++. ...+.+.++++.+...|++.......|+. ..+....+++....+...-. .
T Consensus 287 gre~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~ 354 (539)
T KOG0548|consen 287 GRELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--N 354 (539)
T ss_pred hHHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--C
Confidence 42211 11111 12444556677777777765544333322 12223334444433333221 2
Q ss_pred CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 445 PDS-YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 445 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
|.. .-...-...+.+.|++..|.+.|.++++..+. |...|....-+|.+.|.+..|++-.+..++.+ ++....|..=
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RK 432 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRK 432 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 221 11122245567778888888888888776644 77788888888888888888888777777652 3344555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
..++....+++.|.+.|++.++.++.+.+....+.+++..
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 5566666778888888888888888777777766666553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-07 Score=87.50 Aligned_cols=218 Identities=14% Similarity=0.073 Sum_probs=143.9
Q ss_pred CChhHHHHHHHHHHHCCC-CCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHH
Q 041458 112 NKMKKAIKVMEMMVSSGI-IPD--ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSL 188 (568)
Q Consensus 112 ~~~~~A~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (568)
+..+.++.-+.+++.... .|+ ...|..+...|...|+.++|...|++..+.. |.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456667777777775421 122 3457777778888899999999998888763 456788899999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 041458 189 QFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG 268 (568)
Q Consensus 189 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 268 (568)
+.|++..+.... +..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999998876322 56677778888888899999999998888763 32221222222334567888999888665433
Q ss_pred CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc---CCC---CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 269 FEPNVVSYNILLRSLCMEGRWEEANELLAEMDG---GDR---SPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGR 338 (568)
Q Consensus 269 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (568)
..|+...+ .+.. ...|+..++ +.++.+.+ ... +.....|..+...+.+.|+.++|...|++..+.+
T Consensus 195 ~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12332222 2222 234444333 23333332 111 1123567788888888888888888888888764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-07 Score=79.92 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=22.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVS 126 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 126 (568)
+..++.+|++++..-.+.. +.+....+.|...|....++..|-..++++-.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q 72 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ 72 (459)
T ss_pred HHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444333331 11344444444444444445555555544443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-06 Score=75.60 Aligned_cols=167 Identities=11% Similarity=0.069 Sum_probs=91.8
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHH
Q 041458 199 LVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPN-LVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYN 277 (568)
Q Consensus 199 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 277 (568)
++.|+.....+.+.+...|+.++|...|++.... .|+ ........-.+.+.|+.+....+...+.... +-....|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3445556666666777777777777777666544 121 1112222223345566666655555554331 11222333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 041458 278 ILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG 357 (568)
Q Consensus 278 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 357 (568)
.-.......++++.|+.+-++.+..+ +.+...+..-...+...|++++|.-.|+...... +.+..+|..++..|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 33334445566667777666666543 3344444444556666677777777777665542 235566777777777777
Q ss_pred CHHHHHHHHHHHh
Q 041458 358 KVDLVVKCLDQMF 370 (568)
Q Consensus 358 ~~~~a~~~~~~~~ 370 (568)
.+.+|.-+-+...
T Consensus 383 ~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 383 RFKEANALANWTI 395 (564)
T ss_pred hHHHHHHHHHHHH
Confidence 7777665555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-06 Score=83.79 Aligned_cols=268 Identities=14% Similarity=0.090 Sum_probs=141.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH-hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGI-IPDA-SSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
..|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+. .|.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHH-hH
Confidence 3445555555566777776666666554321 1121 11222233456677888888888877765 2334444442 22
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 041458 177 GLCM----LGNLNQSLQFLDRLIQKGLVPN-AFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251 (568)
Q Consensus 177 ~~~~----~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (568)
.+.. .+....+.+.+... .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 2222 33444444444431 111222 2333445556777888888888888887763 33456667777778888
Q ss_pred CChHHHHHHHHHhhhCCC-CCCh--hHHHHHHHHHHcCCCHHHHHHHHHHhccCCC-CcCHhhH-H--HHHHHHHhcCCh
Q 041458 252 GRTEEAIRFFRDLPSKGF-EPNV--VSYNILLRSLCMEGRWEEANELLAEMDGGDR-SPTIVTY-N--ILIGSLAYHGKT 324 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~ 324 (568)
|++++|..++++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888877665422 1222 2344677777888888888888887653321 1111111 1 223333344433
Q ss_pred HHHHHH--HHHHHHCCCCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 325 DHALKV--LDEMVKGRFRPSAASYN--PIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 325 ~~a~~~--~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
..+.++ ...............+. ....++...|+.+.|..+++.+..
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 333332 11111111011111222 344456667777777777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-06 Score=82.93 Aligned_cols=310 Identities=9% Similarity=-0.034 Sum_probs=145.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHH---
Q 041458 204 FTYSFLLEAAYKERGVHAAMKLLDDIIAKGG-KPNLV-SYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNI--- 278 (568)
Q Consensus 204 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--- 278 (568)
..|..+...+...++.+.+.+.+.+...... .++.. ........+...|++++|.+++++..+.... +...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 3444555555556666666665555544311 11211 1112233445667777777777776655221 2223331
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
........+..+.+.+.++... ...+........+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence 1111122344444555444311 111222333444555666777777777777777665422 44455666666677777
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM 438 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (568)
+++|...+++.......+... ....|..+...+...|+.++|..++++.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~-------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSML-------------------------------RGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhhhccCCCcch-------------------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777766665542211110 0112334455555666666666666655
Q ss_pred HHCCCCCC-hhhH-H--HHHHHHHhcCCHHHHHHH--HHHH-HhCCC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 439 TKYGFTPD-SYTY-S--SLIRGLCMEGLIEEALEI--FVVM-EEYDY-KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 439 ~~~~~~p~-~~~~-~--~l~~~~~~~g~~~~a~~~--~~~m-~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
......+. .... + .++.-+...|....+.++ .... ..... ............++...|+.++|..+++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 43211011 1111 1 222222333332222222 1111 11100 11111122455566777778888877777765
Q ss_pred CCCC-------C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 511 KGQM-------P-NETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 511 ~g~~-------p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
.... . .........-++...|+.++|.+.+...+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3211 0 11122222234556788888888877776554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-05 Score=80.02 Aligned_cols=391 Identities=13% Similarity=0.113 Sum_probs=210.2
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH----------HHHHHHHHCCC---------------
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAI----------KVMEMMVSSGI--------------- 129 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----------~~~~~~~~~~~--------------- 129 (568)
+++++.--+..++..++.|.. |..++|.|...|...++-.+-. .+=.-..++++
T Consensus 850 kRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~e 928 (1666)
T KOG0985|consen 850 KRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLE 928 (1666)
T ss_pred hhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHH
Confidence 567777778888888888765 8888888888877554433211 11111111110
Q ss_pred ----CCCHhhHHHHHHHHHhcCChhh-----------HHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHH
Q 041458 130 ----IPDASSYTYLVNCLCKKGNVGY-----------AMQLVEKMEDYGYP--TNTVTYNSLVRGLCMLGNLNQSLQFLD 192 (568)
Q Consensus 130 ----~~~~~~~~~li~~~~~~g~~~~-----------a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (568)
......|-...+.+.+..+.+- -+++.++..+-+++ .|+..-..-+.++...+-..+-.++++
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLE 1008 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLE 1008 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 0011122233333333333332 23456666654433 356667777899999999999999999
Q ss_pred HHHHCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--
Q 041458 193 RLIQKG--LVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG-- 268 (568)
Q Consensus 193 ~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-- 268 (568)
++.-.. +.-+...-+.++-...+.. .....+..+++-.-. .| .+...+..++-+++|..+|+...-.+
T Consensus 1009 KIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1009 KIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 986431 1112223344444433332 233333333332221 01 11222233344444444444321100
Q ss_pred -------------------CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 041458 269 -------------------FEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALK 329 (568)
Q Consensus 269 -------------------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 329 (568)
---.+..|..+..+-.+.|...+|.+-|-+. .|+..|..+++...+.|.+++-.+
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 0013456677777777777777776665432 256667777777777777777777
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCC
Q 041458 330 VLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQN 408 (568)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (568)
.+....+..-.|.+ =..+|-+|++.++..+....+. -|+...... ...+...+.++.|.-+|...
T Consensus 1155 yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred HHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 66655554433333 3566777777776665444331 234333333 44555566666666666433
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 041458 409 SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNAL 488 (568)
Q Consensus 409 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 488 (568)
..|..+...+...|++..|...-++.- +..||..+-.+|...+.+.-| +|...++.....-...+
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 337777778888888887776655432 455676666666655444322 23333333344455566
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 041458 489 LLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~ 509 (568)
+..|-..|.+++-+.+++...
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhh
Confidence 666666666666666655543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-05 Score=79.86 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=62.5
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-----------CCCCCHhhHHHHHH
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-----------GIIPDASSYTYLVN 141 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~ 141 (568)
|.-...++++++.++.|+..++..|..+...+..-|..+--.+..+++|+....- ++.-|+.+.-..|.
T Consensus 653 yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIq 732 (1666)
T KOG0985|consen 653 YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQ 732 (1666)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHH
Confidence 4455677888888888888888878777777777777776677777888776542 24557777777888
Q ss_pred HHHhcCChhhHHHHH
Q 041458 142 CLCKKGNVGYAMQLV 156 (568)
Q Consensus 142 ~~~~~g~~~~a~~~~ 156 (568)
+.++.|++.+..++.
T Consensus 733 AA~kt~QikEvERic 747 (1666)
T KOG0985|consen 733 AACKTGQIKEVERIC 747 (1666)
T ss_pred HHHhhccHHHHHHHH
Confidence 888888887776654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-06 Score=74.69 Aligned_cols=316 Identities=17% Similarity=0.171 Sum_probs=185.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHH-HHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNS-LVRGL 178 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~ 178 (568)
.+..++..+.+..++++|++++..-.++.. .+....+.|..+|-...++..|-..++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 366777778888899999999888877752 26677888888888888999999999888764 345444433 34556
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAA--YKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
-+.+.+.+|+++...|... ++...-..-+.+. ...+++..+..+.++....| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6778888999988887542 2222222223332 34677888888888776432 44455555556678899999
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhH----HHHHHHHHhcCChHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTY----NILIGSLAYHGKTDHALKVLD 332 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~ 332 (568)
|.+-|+...+-+---....||.-+ +..+.|+.+.|++...++.++|++..+..- ...++. ...|+. ..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHH
Confidence 999998877653332445666444 455678889999999998888865221100 000000 000000 00000
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 041458 333 EMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR-CKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP 411 (568)
Q Consensus 333 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (568)
.. -...+|.-...+.+.++++.|.+.+-+|..+. ...|+++...+...-..+++-+..+-+.-+.+.++ .+
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CC
Confidence 00 00112222334455666666666665554321 12344444443333334445455554444444444 34
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYE 437 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~ 437 (568)
..+|..++-.||++.-++-|-.++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55666666667777666666666644
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.2e-06 Score=78.65 Aligned_cols=407 Identities=14% Similarity=0.032 Sum_probs=206.3
Q ss_pred CCchhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041458 69 NNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN 148 (568)
Q Consensus 69 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 148 (568)
++.+|+..|++++|++=-..-++.. +.-...|+....++.-.|++++|+.-|.+-++... .+...++-+..++.
T Consensus 42 rsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~---- 115 (539)
T KOG0548|consen 42 RSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP-SNKQLKTGLAQAYL---- 115 (539)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC-chHHHHHhHHHhhh----
Confidence 3578899999999987666666542 22356799999999999999999999999988753 25666777777761
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHH-----HHHhcCChHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHHcCCHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVR-----GLCMLGNLNQSLQFLDRLIQKGLVPNAFT---YSFLLEAAYKERGVH 220 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~ 220 (568)
.+.+. +... .++..|..+.. .+.....+..-++.+..-.. +.-. ...++.+.......+
T Consensus 116 ~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~-----~l~~~l~d~r~m~a~~~l~~~~ 182 (539)
T KOG0548|consen 116 EDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT-----SLKLYLNDPRLMKADGQLKGVD 182 (539)
T ss_pred HHHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH-----hhhcccccHHHHHHHHHHhcCc
Confidence 11111 1111 13333333322 22222222222222211110 1111 111121111111100
Q ss_pred HHHHHHHHHHHcC-------CCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 221 AAMKLLDDIIAKG-------GKPNLVSYNVLLTGLCKEGR-TEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 221 ~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
.- .....| ..|... .....-..++ .++... +.-..-...+..+..+..+++.|
T Consensus 183 ~~-----~~~~~~~~~~~~~~~p~~~----~~~~~~~~~d~~ee~~~----------k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 183 EL-----LFYASGIEILASMAEPCKQ----EHNGFPIIEDNTEERRV----------KEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cc-----cccccccccCCCCCCcccc----cCCCCCccchhHHHHHH----------HHhhhHHHHHHHHHHHhhhHHHH
Confidence 00 011111 112100 0000000000 000000 00112234566666677777777
Q ss_pred HHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHH-------HHHHHHhcCCHHHHHHH
Q 041458 293 NELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNP-------IIARLCSEGKVDLVVKC 365 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~ 365 (568)
.+.+....... .+..-++....+|...|...+....-++..+.|.. ...-|+. +..+|.+.++++.++..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777766654 34555566666777777777666665555554322 1112222 23355566777888888
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 041458 366 LDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP 445 (568)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 445 (568)
|.+.+.....|+...- ....+++........-.++.. ..-...-...+.+.|++..|+..+.++++.. +-
T Consensus 321 ~~kaLte~Rt~~~ls~--------lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSK--------LKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHHHhhhhcCHHHHHH--------HHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 8877665555443322 122333333333322222111 1111122455667778888888888777764 33
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
|...|....-+|.+.|.+..|++--+...+.... ....|.-=..++....++++|.+.|++.++. .|+..-+.--+.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYR 467 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 5667777777777777777777766666655221 3334444444555556777777777777764 354444443343
Q ss_pred HHHh
Q 041458 526 GIAH 529 (568)
Q Consensus 526 ~~~~ 529 (568)
-|..
T Consensus 468 rc~~ 471 (539)
T KOG0548|consen 468 RCVE 471 (539)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-05 Score=72.73 Aligned_cols=426 Identities=11% Similarity=0.065 Sum_probs=235.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHH
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSL 174 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (568)
+-|+.+|+.||.-+..+ .++++++.++++... ++.....|..-|..-.+..+++...++|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 55888999998877655 889999999988864 23356678888888888899999999998877642 356677776
Q ss_pred HHHHHhc-CChH----HHHHHHHHHH-HCCCCCCH-hhHHHHHHH---------HHHcCCHHHHHHHHHHHHHcCCCCCH
Q 041458 175 VRGLCML-GNLN----QSLQFLDRLI-QKGLVPNA-FTYSFLLEA---------AYKERGVHAAMKLLDDIIAKGGKPNL 238 (568)
Q Consensus 175 i~~~~~~-g~~~----~a~~~~~~m~-~~~~~~~~-~~~~~li~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (568)
+.---+. |+.. ...+.|+-.. +.|+.+-. ..|+..+.. +..+.+++...+++++++..-...=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6644332 2222 2233344333 33433322 234444332 23344556666666666544221112
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc--CCCCcCH--------
Q 041458 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG--GDRSPTI-------- 308 (568)
Q Consensus 239 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~-------- 308 (568)
..|+-.. ...+. .|..|-..++. -+...+..|.++++++.. .|.....
T Consensus 173 kLW~DY~-----------------~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 173 KLWKDYE-----------------AFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred HHHHHHH-----------------HHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 2233211 11000 01111111110 111222333333333211 1110000
Q ss_pred -------hhHHHHHHHHHhcC------Ch--HHHHHHHHHHH-HCCCCCCcccHHH-----HHHHHHhcCC-------HH
Q 041458 309 -------VTYNILIGSLAYHG------KT--DHALKVLDEMV-KGRFRPSAASYNP-----IIARLCSEGK-------VD 360 (568)
Q Consensus 309 -------~~~~~l~~~~~~~g------~~--~~a~~~~~~~~-~~~~~~~~~~~~~-----li~~~~~~~~-------~~ 360 (568)
..|-.+|..=...+ .. ....-.+++.+ -.+..|+.....+ .-+.+...|+ .+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 01111121110000 00 01111111111 1122222211000 0012222333 35
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041458 361 LVVKCLDQMFHRRCKPNEGTYNGLAMLCG----VGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLY 436 (568)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (568)
++..+++..+..-...+..++..+..+.. ....+.....++++.........-+|..++..-.+..-+..|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 56666666554433334444444333322 12355556666666655444445668888888888888999999999
Q ss_pred HHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 041458 437 EMTKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 437 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
+..+.+..+ +..+.++++.-+| .++.+-|.++|+.-.+. ..-++.--...++-+...++-..|..+|++.+..++.|
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 999887766 6667788887766 47889999999876643 12244455677888888999999999999999886666
Q ss_pred CH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 516 NE--TTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 516 ~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
|. .+|..+++-=..-|+...+.++-++....-+
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 54 8899999988899999999999888876665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.2e-06 Score=82.54 Aligned_cols=455 Identities=12% Similarity=0.024 Sum_probs=255.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 041458 79 LNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEK 158 (568)
Q Consensus 79 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 158 (568)
...|+..|-+.++..+. =...|..|...|+...+..+|.+.|+.+-+-+. .|...+......|+...+.+.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55566666555554221 234677777777777788888888888776543 2666777788888888888888777433
Q ss_pred HHhCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 041458 159 MEDYGYPTN--TVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP 236 (568)
Q Consensus 159 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (568)
.-+.. +.- ...|....-.|.+.++..+|..-|+......+. |...|..+..+|.+.|++..|.++|.+.... .|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 32221 111 112333444566677788888888877765433 7778888888888888888888888887665 33
Q ss_pred CHh-hHHHHHHHHHhcCChHHHHHHHHHhhhC------CCCCChhHHHHHHHHHHcCCCHHHHHHHHHH-------hccC
Q 041458 237 NLV-SYNVLLTGLCKEGRTEEAIRFFRDLPSK------GFEPNVVSYNILLRSLCMEGRWEEANELLAE-------MDGG 302 (568)
Q Consensus 237 ~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~ 302 (568)
+.. .---.....+..|.+.+|+..+..+... +..--..++.-+...+...|-...+...++. ....
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 221 1111223346678888888887776543 1111122222222223333332333333322 1111
Q ss_pred CCCcCHhhHHHHHHHH-------------------H----hcCCh---H---HHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 041458 303 DRSPTIVTYNILIGSL-------------------A----YHGKT---D---HALKVLDEMVKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 303 ~~~~~~~~~~~l~~~~-------------------~----~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~ 353 (568)
....+...|..+-++| . ..+.. + -+.+.+-.-++ ...+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 1111222222222111 1 11111 0 01111111011 112344454444443
Q ss_pred Hh----cC----CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041458 354 CS----EG----KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRK 425 (568)
Q Consensus 354 ~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 425 (568)
.+ .+ +...|+..+.+.++.. ..+...|+.+......|++.-|...|-+-....+. ...+|..+...+.+.
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-chhheeccceeEEec
Confidence 33 11 1235666666665442 34566677766666667777777777665554433 456677777778888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCChhhHHHHHHHHHccCChHHH
Q 041458 426 GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVM--E--EYDYKPDVDNFNALLLGLCKSRRTDLS 501 (568)
Q Consensus 426 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m--~--~~~~~p~~~~~~~li~~~~~~g~~~~a 501 (568)
.+++.|...|...+...+ .|...|......-...|+.-++..+|..- . ..|-.|+..-|-+........|+.++-
T Consensus 864 ~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 899999999988887532 25666766655566678888888888652 2 234445666666665566667776654
Q ss_pred HHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 502 LEVFQMMIE---------KGQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 502 ~~~~~~m~~---------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+...+.+.. .+.+.+...|.+......+.+.++.|.+...+++
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444333221 1344466778777777777788777777766653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=86.07 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM----EGLIEEALEIFVVMEEYDYKPDVDNFNA 487 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 487 (568)
.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+|.-+|+++.+. ..+++.+.+.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng 206 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG 206 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence 344444555666666666666666666543 222 233333333322 12456666666665542 3345566666
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCC
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDEL-ELSAEVLKELQLRQVV 549 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~ 549 (568)
+..++...|++++|.+++++..+.+ +-+..++..++-+....|+. +.+.+++.++....+.
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 6666666666666666666655432 22445555555555555555 4455666666655544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-05 Score=76.69 Aligned_cols=308 Identities=16% Similarity=0.143 Sum_probs=181.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCC
Q 041458 209 LLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGR 288 (568)
Q Consensus 209 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 288 (568)
.+.+.....++.+|+.+++.+.+... -..-|..+...|...|+++.|.++|.+.- .++--|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 44556677888888888888776622 33456777788888899999998886532 35667888899999
Q ss_pred HHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 289 WEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
|++|.++-++... .......|..-..-.-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 9999888777643 244555666666667788888888887754432 33 357788888888888877765
Q ss_pred HhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 041458 369 MFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSY 448 (568)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 448 (568)
-.... ...........+...|+..+|..-|-+... |.+-+..|-..+.+++|.++-+. .|-. |..
T Consensus 876 ~h~d~--l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg~-n~~ 940 (1636)
T KOG3616|consen 876 HHGDH--LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGGA-NAE 940 (1636)
T ss_pred hChhh--hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cccc-cHH
Confidence 53221 111122224566667888888877765543 55556666666666666554432 1100 111
Q ss_pred -----hH-------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHH
Q 041458 449 -----TY-------------------SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEV 504 (568)
Q Consensus 449 -----~~-------------------~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 504 (568)
.| ..-++..+..+.++-|.++-+...+.. .......+..-+-..|++++|.+.
T Consensus 941 k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskh 1017 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKH 1017 (1636)
T ss_pred HHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHh
Confidence 01 111222233444444444443333321 122233444456778899999888
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-----HHHhcC-ChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 505 FQMMIEKGQMPNETTYTILVE-----GIAHQD-ELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~-----~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
+-+.++.+ .-..||...+- -..+.| ++++|...|- .-.+.....++.+.-|.
T Consensus 1018 yveaikln--tynitwcqavpsrfd~e~ir~gnkpe~av~mfi-----~dndwa~aervae~h~~ 1075 (1636)
T KOG3616|consen 1018 YVEAIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFI-----HDNDWAAAERVAEAHCE 1075 (1636)
T ss_pred hHHHhhcc--cccchhhhcccchhhHHHHHcCCChHHHHHHhh-----hcccHHHHHHHHHhhCh
Confidence 88887642 23345543221 233445 5666655442 12355555555555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.9e-05 Score=73.44 Aligned_cols=165 Identities=14% Similarity=0.168 Sum_probs=101.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHH
Q 041458 108 LCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQS 187 (568)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 187 (568)
....|.+++|..+|.+..+. ..|=..|-..|.+++|.++-+.-.+. . -..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHH
Confidence 35678889999999887763 33344566778888888876543221 1 233555566666666777777
Q ss_pred HHHHHHH----------HHCC---------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 041458 188 LQFLDRL----------IQKG---------LVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGL 248 (568)
Q Consensus 188 ~~~~~~m----------~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (568)
++.|++. +... -..|...|.......-..|+.+.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 7776642 1111 122444455555555567778888877776543 44566666
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 249 CKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
|-.|+.++|-++-++-. |......|.+.|-..|++.+|...|-+.
T Consensus 949 C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66777777777666533 4455555666677777766666666543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-05 Score=67.34 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=66.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH---HHHHHhcCChhhHHHHHHHHHhCCCCCcHHHH-
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYL---VNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTY- 171 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~- 171 (568)
.++.-..-+...+...|++.+|+.-|....+- |+..|.++ ...|...|+-..|+.-+.+..+. +||-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 34555556777888888888898888888864 44444444 34677788888888888887773 4554322
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 172 NSLVRGLCMLGNLNQSLQFLDRLIQK 197 (568)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (568)
..-...+.+.|.++.|..=|+.+++.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhc
Confidence 22344567888888888888888776
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=0.00015 Score=72.70 Aligned_cols=223 Identities=19% Similarity=0.226 Sum_probs=157.0
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDL--CKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 151 (568)
...+++..|+.....+++.. ||. .|..++.++ .+.|+.++|..+++....-+.. |..|...+-.+|...+..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 35688899999999887763 443 344455554 5899999999999888776654 88899999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC----------HHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERG----------VHA 221 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~ 221 (568)
|..+|++..+. -|+......+..+|.+.+++.+-.++--+|-+. .+-+.+.+-++++...+... ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999875 366778888888999988877655555555443 34456666666666654311 235
Q ss_pred HHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCChHHHHHHHH-HhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 222 AMKLLDDIIAKGGK-PNLVSYNVLLTGLCKEGRTEEAIRFFR-DLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 222 a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
|.+.++.+.+.+.+ -+..-.......+-..|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66677777766422 122223333445567889999999993 3333323334455566777888889999999888888
Q ss_pred ccCC
Q 041458 300 DGGD 303 (568)
Q Consensus 300 ~~~~ 303 (568)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-07 Score=85.05 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC----RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM 459 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 459 (568)
+..+.+.++++.|.+.++.|.+.+ +..+...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..++..
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHH
Confidence 344444555555555555544331 1122333333332 223577788888886654 45667777777777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHHH
Q 041458 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT-DLSLEVFQMMIE 510 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 510 (568)
.|++++|.+++++..+.+.. +..+...++.+....|+. +.+.+++.++..
T Consensus 214 ~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred hCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88888888888777655443 566666777777777776 556677777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-05 Score=85.14 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHCCCC--C-C----HhhHHHHHHHHH
Q 041458 115 KKAIKVMEMMVSSGII--P-D----ASSYTYLVNCLC 144 (568)
Q Consensus 115 ~~A~~~~~~~~~~~~~--~-~----~~~~~~li~~~~ 144 (568)
+.+.++++.+.+.|.. + + .+.|+.++.-+.
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l 328 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFL 328 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHH
Confidence 3456777777777641 1 1 244666665544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-05 Score=86.05 Aligned_cols=335 Identities=12% Similarity=0.020 Sum_probs=197.4
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------CCCH--hhHHHHHHHH
Q 041458 142 CLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL------VPNA--FTYSFLLEAA 213 (568)
Q Consensus 142 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~--~~~~~li~~~ 213 (568)
.....|+++.+..+++.+.......+..........+...|+++++...+......-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777666666553211111222333445555677889998888887754310 1111 1112223345
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-CCChhHHHHHHHHHH
Q 041458 214 YKERGVHAAMKLLDDIIAKGGKPNL----VSYNVLLTGLCKEGRTEEAIRFFRDLPSK----GF-EPNVVSYNILLRSLC 284 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~ 284 (568)
...|+++.|...+++....-...+. ...+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5788999999999887763111121 23455566677889999998888877542 11 111234455666778
Q ss_pred cCCCHHHHHHHHHHhccC----CCC--c-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC--CcccHHHHHHHH
Q 041458 285 MEGRWEEANELLAEMDGG----DRS--P-TIVTYNILIGSLAYHGKTDHALKVLDEMVKGR--FRP--SAASYNPIIARL 353 (568)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 353 (568)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888775432 211 1 12334455566777799999988888765421 111 122333345567
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC-hhh--H--H--HHHHHHhCCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHH
Q 041458 354 CSEGKVDLVVKCLDQMFHRRCKPN-EGT--Y--N--GLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ---EFYKYVITSLC 423 (568)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~--~--~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~ 423 (568)
...|+++.|...+.+......... ... . . .+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788999999888887754211111 010 1 0 123444578888888887765542211111 11345666777
Q ss_pred hcCChhHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 424 RKGKTYQAFQLLYEMTKY----GFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
..|+.++|...+++.... |..++ ..+...+..++...|+.++|.+.+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899998888877642 22222 235566677788889999999888888754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.3e-07 Score=84.75 Aligned_cols=223 Identities=14% Similarity=0.092 Sum_probs=171.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
-+.+.|++.+|.-.|+..++.... +...|..|......+++-..|+..+.+.++.. +.|......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 456789999999999998887533 77899999989999999999999999998873 3367778888888999999999
Q ss_pred HHHHHHHhhhCCCC--------CChhHHHHHHHHHHcCCCHHHHHHHHHHhc-cCCCCcCHhhHHHHHHHHHhcCChHHH
Q 041458 257 AIRFFRDLPSKGFE--------PNVVSYNILLRSLCMEGRWEEANELLAEMD-GGDRSPTIVTYNILIGSLAYHGKTDHA 327 (568)
Q Consensus 257 A~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a 327 (568)
|++.++..+...++ ++...-+. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999887654211 00000000 12222233445556665554 334347888888899999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHh
Q 041458 328 LKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLG 404 (568)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 404 (568)
...|+..+...+. |...||.|...++...+..+|+..|.+.++..+.--...|+..+.+...|.+++|...|-...
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999986543 778999999999999999999999999999877667778888888999999999988887653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-06 Score=89.32 Aligned_cols=208 Identities=11% Similarity=0.078 Sum_probs=148.1
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhh
Q 041458 235 KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-GFE---PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVT 310 (568)
Q Consensus 235 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 310 (568)
+-+...|-..|....+.++.++|.+++++.... ++. --...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 345667888888888888888888888887643 111 12346777777766677778888888888765 223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH--HHHHH
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG--LAMLC 388 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~ 388 (568)
|..|...|.+.++.++|.++++.|.+. +.-...+|...+..+.+..+-+.|..++.++++.-+.....-+.. +..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 788888888888888888888888875 224667788888888888888888888888887644433333322 55556
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD 446 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 446 (568)
+.|+.+.+..+|+......+. ....|+.+|+.-.++|+.+.+..+|++.+..++.|-
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 677777777777777665444 445677777777777777777777777777665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-05 Score=80.13 Aligned_cols=154 Identities=11% Similarity=0.052 Sum_probs=99.2
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDA--SSYTYLVNCLCKKGNV 149 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 149 (568)
.|....+...|.+.|+...+.+ ..+...+......|++..+++.|..+.-..-+.. +.-. ..|....-.|.+.++.
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccch
Confidence 3444457778888888877764 3477788888888998888988888733322221 1111 1233333456677788
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH--HHHHHHcCCHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL--LEAAYKERGVHAAMKLLD 227 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~ 227 (568)
..|+.-|+...+.. |.|...|..+..+|.+.|++..|.++|.+.... .|+. +|... .-.-+..|.+.++...+.
T Consensus 579 h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred hhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 88888888777653 447778888888888888888888888877654 3332 22222 223345677777777776
Q ss_pred HHHH
Q 041458 228 DIIA 231 (568)
Q Consensus 228 ~~~~ 231 (568)
..+.
T Consensus 655 ~ii~ 658 (1238)
T KOG1127|consen 655 LIIY 658 (1238)
T ss_pred HHHH
Confidence 6544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-06 Score=87.45 Aligned_cols=216 Identities=13% Similarity=0.082 Sum_probs=142.2
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 041458 86 LERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-GIIP---DASSYTYLVNCLCKKGNVGYAMQLVEKMED 161 (568)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 161 (568)
|++.+.. .+.+...|...+......++.+.|++++++++.. ++.- -...|.++++.--.-|.-+...++|+++.+
T Consensus 1447 ferlvrs-sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRS-SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhc-CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 4444443 2345667777777777888888888888877653 1111 123566777666666777777788887776
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhh
Q 041458 162 YGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-PNLVS 240 (568)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 240 (568)
.. .....|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+.++-+.|..++.+.++.-.+ -....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 52 23446777788888888888888888888764 2345667777777777777777787777777665111 02223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCc
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSP 306 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 306 (568)
....+..-.+.|+.+.+..+|+.....-++ -...|+..++.-.+.|+.+.++.+|+++...++.+
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 334444556777777777777777655322 45677777777777777777777777777666544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.8e-07 Score=84.55 Aligned_cols=217 Identities=16% Similarity=0.083 Sum_probs=109.2
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAM 153 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 153 (568)
.+.|++.+|.-.|+..++.. +-+...|-.|......+++-..|+..+.+..+.... |..+...|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 45666666666666665553 235666666666666666666666666666655322 4555556666666666666666
Q ss_pred HHHHHHHhCCCCCcHHHHHHHH---------HHHHhcCChHHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 041458 154 QLVEKMEDYGYPTNTVTYNSLV---------RGLCMLGNLNQSLQFLDRLI-QKGLVPNAFTYSFLLEAAYKERGVHAAM 223 (568)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~ 223 (568)
+.++.-....++ ..|..-. ..+.....+....++|-++. +.+..+|+.+...|--.|.-.|++++|.
T Consensus 374 ~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 666555432100 0000000 01111111223333333332 2233345555555555555556666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHH
Q 041458 224 KLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGRWEEANELLAE 298 (568)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 298 (568)
..|+..+... +-|...||-|...++...+.++|+..|++..+. .|+ +.+...|.-.|...|.+++|.+.|-.
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 6665555542 224555666655555555566666666555543 232 22333344455555666555555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-05 Score=74.89 Aligned_cols=226 Identities=8% Similarity=-0.008 Sum_probs=131.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCC--HHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG-KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGK--VQEA 396 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a 396 (568)
..+..++|+.+..++++.++. +..+|+.--..+...| ++++++..++++.+..++.-.........+.+.|. .+++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 344555555555555544221 2233433333444444 34566666666655544333332222222223333 2455
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CC----HHHHHHH
Q 041458 397 FAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME---GL----IEEALEI 469 (568)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~a~~~ 469 (568)
...++.+.+.++. +...|+.....+...|+++++++.++++++.++. |...|+.....+.+. |. .++..++
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6666666655443 6677887777777888888888888888876544 555666665555443 22 2456677
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------------
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKS----RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD-------------- 531 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-------------- 531 (568)
..++....+. |...|+.+...+... ++..+|.+.+.+..+.+ ..+...+..|++.|....
T Consensus 206 ~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 7666665544 777787777777663 33456777777766542 336677777888776532
Q ss_pred ----ChhHHHHHHHHHHHcCCCC
Q 041458 532 ----ELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 532 ----~~~~a~~~~~~~~~~~~~~ 550 (568)
..++|.++++.+.+.++..
T Consensus 284 ~~~~~~~~a~~~~~~l~~~d~ir 306 (320)
T PLN02789 284 EELSDSTLAQAVCSELEVADPMR 306 (320)
T ss_pred cccccHHHHHHHHHHHHhhCcHH
Confidence 2367888888886555543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7e-05 Score=66.54 Aligned_cols=316 Identities=15% Similarity=0.124 Sum_probs=165.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHhhH-H
Q 041458 167 NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLL---EAAYKERGVHAAMKLLDDIIAKGGKPNLVSY-N 242 (568)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 242 (568)
++.-.--+...+...|++.+|+.-|...++. |+..|.++. ..|...|+-..|+.-+.+.++. +||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 4444555677777788888888888777654 444454443 4566777777777777777765 5554321 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC
Q 041458 243 VLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG 322 (568)
Q Consensus 243 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (568)
.-...+.+.|.+++|..=|+.+.+.. |+..+ ...++.+.-..++- ......+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCC
Confidence 12345567888888888888777652 22111 01111111111110 11122233344445
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHH
Q 041458 323 KTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQS 402 (568)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 402 (568)
+...|++....+++..+ .|...+..-..+|...|++..|+.-++...+.........|..-..+...|+.+.++...++
T Consensus 170 D~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred chhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55555555555554321 24444444445555555555555555554444433444444444445555555555555555
Q ss_pred HhhCCCCCCh--hhHHHH---------HHHHHhcCChhHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHH
Q 041458 403 LGNKQNSSPQ--EFYKYV---------ITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTY---SSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 403 ~~~~~~~~~~--~~~~~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~ 468 (568)
..+.++.-.. ..|..+ +......+++.++++..+...+.......+.+ ..+-.++...|++.+|++
T Consensus 249 CLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 249 CLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 4443221100 001100 12233456666666666666554322122222 233344555677777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.-.+..+.... |+.++.--..+|.-...++.|+.-|+.+.+.
T Consensus 329 qC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 329 QCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77776654322 4667777777777777777777777777764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.4e-06 Score=77.26 Aligned_cols=209 Identities=11% Similarity=0.014 Sum_probs=158.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh--
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVG-KVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKT-- 428 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-- 428 (568)
.+...++.++|+.+..+++...+..-.....-...+...| .+++++..++++.+.++. +..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3445677889999999998774433322222234445556 679999999999887665 556688776666677763
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCh----HHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS---RRT----DLS 501 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~----~~a 501 (568)
++++.+++++++...+ |..+|+....++.+.|+++++++.++++.+.++. |...|+.....+.+. |.. ++.
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 6788999899886543 6789999999999999999999999999987766 788888877766554 222 467
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhc
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAHQ----DELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (568)
.+..++++.. .+-|...|..+...+... ++..+|.+.+.+....++.+..++..|+..|+..
T Consensus 203 l~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 7888788775 244778898888888773 3456799999999999999999999999999863
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00018 Score=70.45 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=103.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHH
Q 041458 316 GSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQE 395 (568)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (568)
.+.....++.+|+.+++.+..... -..-|..+.+.|+..|+++.|.++|.+.- .+-.++.+|.+.|+++.
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHH
Confidence 344455566666666666655432 22334555566777777777776665431 12233667777777777
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 396 AFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
|.++-.+... +......|..-..-+-++|++.+|.+++-... .|+ .-|..|-+.|..+..+++.++---
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 7666554432 22233445444455556666666666654332 233 234556666666666555543221
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041458 476 YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540 (568)
Q Consensus 476 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (568)
..-..+...+..-|-..|+++.|...|-+..+ |..-+..|..++.|++|.++.
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 11223444555566667777777766654432 344455566666666655544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00022 Score=67.51 Aligned_cols=422 Identities=9% Similarity=0.022 Sum_probs=232.4
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChhh
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK-KGNVGY 151 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 151 (568)
.++....+++...++++... .+-....|..-|..-.+.++++....+|.+.... ..+...|...+..-.+ .|....
T Consensus 29 e~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~ 105 (656)
T KOG1914|consen 29 EAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFG 105 (656)
T ss_pred HHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcch
Confidence 45566999999999999876 4557788999999999999999999999998875 3467788877764433 333333
Q ss_pred H----HHHHHHHH-hCCCCC-cHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHCCCCCCHhhHH------HHH
Q 041458 152 A----MQLVEKME-DYGYPT-NTVTYNSLVRGL---------CMLGNLNQSLQFLDRLIQKGLVPNAFTYS------FLL 210 (568)
Q Consensus 152 a----~~~~~~~~-~~~~~~-~~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------~li 210 (568)
+ .+.|+-.. +.|+.+ .-..|+..+..+ ....+.+...+++.++....+..=...|+ .=|
T Consensus 106 ~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~I 185 (656)
T KOG1914|consen 106 YREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEI 185 (656)
T ss_pred HHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHH
Confidence 2 23344333 344333 233466655543 33446677888888887542221112222 111
Q ss_pred HHH-------HHcCCHHHHHHHHHHHHH--cCCCCCHh---------------hHHHHHHHHHhcCCh--------HHHH
Q 041458 211 EAA-------YKERGVHAAMKLLDDIIA--KGGKPNLV---------------SYNVLLTGLCKEGRT--------EEAI 258 (568)
Q Consensus 211 ~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~ll~~~~~~g~~--------~~A~ 258 (568)
+.. -+...+..|.++++++.. +|...+.. .|-.+|..--.++-- ....
T Consensus 186 N~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~ 265 (656)
T KOG1914|consen 186 NIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVM 265 (656)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 111 123445667777776643 23321111 133333322111110 0001
Q ss_pred HHHHHh-hhCCCCCChhHHH-----HHHHHHHcCCC-------HHHHHHHHHHhccCCCCcCHhhHHHHHHHHH---hcC
Q 041458 259 RFFRDL-PSKGFEPNVVSYN-----ILLRSLCMEGR-------WEEANELLAEMDGGDRSPTIVTYNILIGSLA---YHG 322 (568)
Q Consensus 259 ~~~~~~-~~~~~~p~~~~~~-----~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g 322 (568)
-.+++. .-.+..|++.... ..-+.+...|+ -+++..+++.....-...+..+|..+.+.-- +..
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 111111 1112222221110 01112222333 3445555555443322223333333332111 112
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhCCCHHHHHHHHH
Q 041458 323 KTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKP-NEGTYNGLAMLCGVGKVQEAFAIIQ 401 (568)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~ 401 (568)
+.+....++++++..-..--..+|..+++...+..-+..|+.+|.++.+.+..+ .+....++.-|.-.++.+-|..+|+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 345555666666554222233466777777777777888888888888777666 5555555666666778888888887
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-
Q 041458 402 SLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEY-D- 477 (568)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~- 477 (568)
.-..+... +...-...+.-+...++-..|..+|++....++.|+ ...|..++.--+.-|++..+.++-+++... .
T Consensus 426 LGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 65544333 334445566777777888888888888877655554 357888888778888888888777766532 1
Q ss_pred -CCCChhhHHHHHHHHHccCCh
Q 041458 478 -YKPDVDNFNALLLGLCKSRRT 498 (568)
Q Consensus 478 -~~p~~~~~~~li~~~~~~g~~ 498 (568)
..+....-..+++-|.-.+..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 222223334445555544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-06 Score=82.19 Aligned_cols=213 Identities=10% Similarity=0.068 Sum_probs=134.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 041458 277 NILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSE 356 (568)
Q Consensus 277 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 356 (568)
..+...+.+.|-..+|..+++++. .|..++.+|...|+..+|..+..+..++ +|+...|..+.+..-..
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 455666777777777777777653 4666777777777777777777766663 46776777766666665
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041458 357 GKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLY 436 (568)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (568)
.-+++|.++.++.... ..........+.++++++.+.|+.-.+.++- -..+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 5666666666654322 0000011122356677777777665544332 34556666666667777777777777
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 437 EMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 437 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..... .|| ...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|...+....+.|.+++|++.++++.+
T Consensus 544 rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66653 444 456777777777777777777777777766533 556666666667777777777777776665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-08 Score=56.48 Aligned_cols=31 Identities=42% Similarity=0.978 Sum_probs=12.6
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 234 GKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 234 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.5e-06 Score=79.46 Aligned_cols=233 Identities=15% Similarity=0.092 Sum_probs=182.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHH
Q 041458 240 SYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLA 319 (568)
Q Consensus 240 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (568)
.-..+...+...|-..+|..+|++.. .|..++.+|+..|+..+|..+..+-.+. +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456778889999999999998764 5777899999999999999999888873 889999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAI 399 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 399 (568)
...-+++|.+++++.... .-..+.......+++.++.+.|+...+..+---...|.......+.+++..|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 989999999999876542 1112222234478999999999988877655555556667777889999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 041458 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD-Y 478 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~ 478 (568)
|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+.. .
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 9988776443 56789999999999999999999999999987 4456677788888899999999999999886321 1
Q ss_pred CCChhhHHHHHHHH
Q 041458 479 KPDVDNFNALLLGL 492 (568)
Q Consensus 479 ~p~~~~~~~li~~~ 492 (568)
.-|..+...++...
T Consensus 620 ~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTV 633 (777)
T ss_pred cccchhhHHHHHHH
Confidence 11444544444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-08 Score=56.61 Aligned_cols=32 Identities=31% Similarity=0.817 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041458 163 GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRL 194 (568)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 194 (568)
|++||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.5e-06 Score=70.10 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=83.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HccCC--hHHH
Q 041458 425 KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL-CKSRR--TDLS 501 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a 501 (568)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666543 335667777777777777777777777777766544 666666666653 55565 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.+++++..+.+ +-+...+..+...+...|++++|...++++.+..+.+++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 77777777752 335666777777777777777777777777777766443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.6e-06 Score=70.08 Aligned_cols=155 Identities=10% Similarity=0.046 Sum_probs=114.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 041458 351 ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQ 430 (568)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (568)
..|...|+++.+......+... . ..+...++.+++...++.....++. +...|..+...|...|++++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~----~-------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP----L-------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc----c-------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 4567777777654443222111 0 0111245667777777777666554 77889999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 431 AFQLLYEMTKYGFTPDSYTYSSLIRGL-CMEGL--IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 431 A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|++
T Consensus 92 A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999986432 677788888764 67777 59999999999987666 788999999999999999999999999
Q ss_pred HHHCCCCCCHHHH
Q 041458 508 MIEKGQMPNETTY 520 (568)
Q Consensus 508 m~~~g~~p~~~~~ 520 (568)
+.+. .+|+..-+
T Consensus 170 aL~l-~~~~~~r~ 181 (198)
T PRK10370 170 VLDL-NSPRVNRT 181 (198)
T ss_pred HHhh-CCCCccHH
Confidence 9986 35554333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-05 Score=67.67 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=112.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
-..+...|+-+....+........+. |.......+....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 34444455555555555554443322 55556667788888888888888888887653 56788888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
++|..-|.+..+..+. +....+.+.-.|.-.|+.+.|..++......+ .-|..+-..+..+....|++++|+.+...-
T Consensus 151 ~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 151 DEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 8888888888876444 56677778888888888888888888887653 336677777777888888888887766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=8e-06 Score=66.38 Aligned_cols=106 Identities=10% Similarity=-0.099 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
+..+..++...|++++|...|+......+. +...|..+..++.+.|++++|...|++....+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 444566666777777777777776655433 56666777777777777777777777777642 3356666666667777
Q ss_pred cCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 041458 530 QDELELSAEVLKELQLRQVVSESAVERL 557 (568)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l 557 (568)
.|+.++|...+++.++..+.++......
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 7777777777777777776655554443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00019 Score=61.69 Aligned_cols=125 Identities=17% Similarity=0.124 Sum_probs=71.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM----EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS 495 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 495 (568)
..+.+..+.+-|.+.+++|.+- .+..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 3445556666666666666642 144555555555543 23466666666666642 345666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcCCC
Q 041458 496 RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELEL-SAEVLKELQLRQVV 549 (568)
Q Consensus 496 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~ 549 (568)
|++++|..++++...+. ..++.++..++-.-...|...+ ..+.+.++....+.
T Consensus 221 ~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred cCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 77777777777766652 3355555555555555554433 34556666555554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-05 Score=70.71 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=115.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChh--hHH
Q 041458 342 SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPN---EGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQE--FYK 416 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 416 (568)
....+......+...|+++.|...++++....+... ...+.....+...|++++|...++++.+..+..... .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344566666777888888888888888877643221 122333566777778888888887777655433322 233
Q ss_pred HHHHHHHhc--------CChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 041458 417 YVITSLCRK--------GKTYQAFQLLYEMTKYGFTPDSY-TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNA 487 (568)
Q Consensus 417 ~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 487 (568)
.+..++... |+.++|.+.++++.+. .|+.. .+..+..... ... .. ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 344444433 5667777777777654 33321 2211111100 000 00 011124
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQ-MP-NETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+...|.+.|++++|...+++..+..- .| ....+..+..++.+.|++++|..+++.+....+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56678899999999999999987521 12 357888999999999999999999988876654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.6e-05 Score=65.45 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 041458 137 TYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE 216 (568)
Q Consensus 137 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 216 (568)
..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 34444555566666666655554332 23345555556667777777777777777766542 45666777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHH
Q 041458 217 RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELL 296 (568)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 296 (568)
|+++.|..-|.+..+... -+....|.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777776666522 24455666666666677777777777666555332 4555555666666777777777665
Q ss_pred HHh
Q 041458 297 AEM 299 (568)
Q Consensus 297 ~~~ 299 (568)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00017 Score=62.07 Aligned_cols=250 Identities=15% Similarity=0.107 Sum_probs=137.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChH
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLN 185 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (568)
+-+.-.|++..++..-+...... -+...-..+-++|...|.+..... +++... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 34444566666655554443321 234444445556666665443322 222211 233333433333333334433
Q ss_pred HHH-HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 186 QSL-QFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 186 ~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
.-+ ++.+.+.......+......-...|+..+++++|++..+... +......=+.++.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 233333333233233333334456777888888887776622 2233333344556777788888888888
Q ss_pred hhCCCCCChhHHHHHHHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 041458 265 PSKGFEPNVVSYNILLRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR 340 (568)
Q Consensus 265 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (568)
.+.. +..|.+.|..++.+ .+++.+|.-+|++|.+. .+|+..+.+....++...|++++|..+++..+.+...
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 7652 45566666666544 35677888888888654 3677777888888888888888888888888776544
Q ss_pred CCcccHHHHHHHHHhcCCH-HHHHHHHHHHhhC
Q 041458 341 PSAASYNPIIARLCSEGKV-DLVVKCLDQMFHR 372 (568)
Q Consensus 341 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~ 372 (568)
++.+...++-.-...|.. +...+.+.++...
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 444554444444444444 3344555555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.7e-05 Score=78.15 Aligned_cols=58 Identities=12% Similarity=-0.016 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHH
Q 041458 272 NVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKV 330 (568)
Q Consensus 272 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 330 (568)
+...+..|+..|...+++++|.++.+...+.. +-....|..+...+.+.++..++..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh
Confidence 34556666777767777777777776554442 22233344444455555555554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-05 Score=70.42 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=34.0
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNT---VTYNSLVRGLCMLGNLNQSLQFLDRLIQK 197 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (568)
...+..+...+...|+++.|...|+++.... |.+. .++..+..++.+.|++++|...++++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445555555556666666666666555432 1111 34455555555666666666666665543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7e-05 Score=76.73 Aligned_cols=134 Identities=12% Similarity=0.063 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
...+..|.....+.|..++|+.+++...+. .|+ ......++.++.+.+++++|....++.....+. +......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 344444555555555555555555555543 333 234444555555555555555555555544333 4444555555
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
++.+.|++++|..+|+++... .+.+..++..+..++...|+.++|...|++.++....
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 555555555555555555542 1223455555555555555555555555555544444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00012 Score=75.12 Aligned_cols=135 Identities=12% Similarity=-0.020 Sum_probs=93.4
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041458 340 RPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVI 419 (568)
Q Consensus 340 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 419 (568)
..+...+..|.....+.|.+++|..+++...+..+.......+....+.+.+++++|...+++.....+. +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 3356677777777788888888888888887775444444444466777777777777777777766544 445566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
.++.+.|++++|..+|++....+ .-+..++..+..++...|+.++|...|+...+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777632 123566777777777777777777777777643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-05 Score=63.64 Aligned_cols=106 Identities=12% Similarity=-0.084 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
.+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+........ +...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 35556778889999999999999988764 236778889999999999999999999999987554 7888999999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPN-ETTYTIL 523 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 523 (568)
..|++++|.+.|+..++. .|+ ...|...
T Consensus 104 ~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~ 132 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM--SYADASWSEIR 132 (144)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 999999999999999884 454 4444333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00014 Score=75.31 Aligned_cols=215 Identities=14% Similarity=0.077 Sum_probs=121.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChhhHHHH------------------H
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS-SYTYLVNCLCKKGNVGYAMQL------------------V 156 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~------------------~ 156 (568)
.+...+..|+..+...+++++|.++.+...+.. |+.. .|-.+...+.+.++.+++.-+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 345566666666666677777777666555542 3322 222222244444444444333 1
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 041458 157 EKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP 236 (568)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (568)
..|.+. .-+..++..+..+|-+.|+.++|.++++++++.. .-|+.+.|.+...|... ++++|.+++.+.+..-+
T Consensus 107 ~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i-- 180 (906)
T PRK14720 107 DKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI-- 180 (906)
T ss_pred HHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--
Confidence 122221 1233566777778888888888888888888776 33777778888777777 88888888777665411
Q ss_pred CHhhHHHHHHH---H--HhcCChHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhh
Q 041458 237 NLVSYNVLLTG---L--CKEGRTEEAIRFFRDLPSK-GFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVT 310 (568)
Q Consensus 237 ~~~~~~~ll~~---~--~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 310 (568)
+..-|+.+... + ....+++.-.++.+.+... |..--+.++..+-..|-..++++++..+++.+.+.. +-|...
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a 259 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKA 259 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Ccchhh
Confidence 11111111110 0 1122233333333333322 222234455555667777888888888888888765 345666
Q ss_pred HHHHHHHHH
Q 041458 311 YNILIGSLA 319 (568)
Q Consensus 311 ~~~l~~~~~ 319 (568)
..-++.+|.
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 666776665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00015 Score=68.00 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=57.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH--HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG--LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTY 429 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 429 (568)
.+...|+++.|++.+..++.. .|+...+.. ...+.+.++.++|.+.++.+....+.. ...+-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChH
Confidence 344556666666666665554 233333332 445555555555555555555543332 333444455555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 468 (568)
+|+.+++...... +-|+..|..|..+|...|+..++..
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 5555555554432 2345555555555555555544443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00031 Score=60.00 Aligned_cols=156 Identities=20% Similarity=0.176 Sum_probs=70.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQA 431 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 431 (568)
+....|+.+.|...++++...-+....+.---...+-..|++++|.++++.+.+.++. |.+++---+...-..|+.-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHH
Confidence 3344445555555555544433111111111133334445555555555555544422 334444334444444555555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHH
Q 041458 432 FQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR---RTDLSLEVFQMM 508 (568)
Q Consensus 432 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m 508 (568)
++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..+. ++..+..+.+.+.-.| +..-+.+++.+.
T Consensus 140 Ik~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555555443 3445555555555555555555555555555533211 3333334444332222 344455555555
Q ss_pred HH
Q 041458 509 IE 510 (568)
Q Consensus 509 ~~ 510 (568)
++
T Consensus 218 lk 219 (289)
T KOG3060|consen 218 LK 219 (289)
T ss_pred HH
Confidence 55
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.005 Score=62.35 Aligned_cols=449 Identities=14% Similarity=0.097 Sum_probs=250.9
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 152 (568)
..|.|+.++|..+++.....+.. |..+...+-..|.+.++.++|..+|+.+... .|+......+..+|.+.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999887665444 8888889999999999999999999999987 46777788888899998888765
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHHcCCHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN----------LNQSLQFLDRLIQKG-LVPNAFTYSFLLEAAYKERGVHA 221 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~ 221 (568)
.+.--++-+ .+|.+...+=++++.+.+.-. ..-|.+.++.+.+.+ ..-+..-...-...+...|.+++
T Consensus 130 Qkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 554444444 255567776677777665421 234556666666553 22222222333345567888999
Q ss_pred HHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHH----------------HH
Q 041458 222 AMKLLD-DIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRS----------------LC 284 (568)
Q Consensus 222 a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~----------------~~ 284 (568)
|..++. ...+.-...+...-+--+..+...+++.+..++-.++..+|.. | |...++. +.
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhh
Confidence 999984 4444433445555566677888899999999999888887543 2 3332221 12
Q ss_pred cCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 041458 285 MEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVK 364 (568)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 364 (568)
..+..+...+...+.......-....+--+..-+..-|+.+++...|-+-. | +-..|..=+..|...=..+.-..
T Consensus 285 ~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g---~kpcc~~Dl~~yl~~l~~~q~~~ 359 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--G---DKPCCAIDLNHYLGHLNIDQLKS 359 (932)
T ss_pred hhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--C---CCcHhHhhHHHhhccCCHHHHHH
Confidence 223444444444444433211112222223333345588888765543322 1 22233333444444434444444
Q ss_pred HHHHHhhCCCCCC--hh----hHHHHHHHHhCC-----CHHHHHHHHHHHh---hCC------CCCCh---------hhH
Q 041458 365 CLDQMFHRRCKPN--EG----TYNGLAMLCGVG-----KVQEAFAIIQSLG---NKQ------NSSPQ---------EFY 415 (568)
Q Consensus 365 ~~~~~~~~~~~~~--~~----~~~~~~~~~~~~-----~~~~a~~~~~~~~---~~~------~~~~~---------~~~ 415 (568)
++........... .. +...+......| ..+.-...+++.. +.+ ..|.. -+-
T Consensus 360 l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav 439 (932)
T KOG2053|consen 360 LMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV 439 (932)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence 4444433211110 00 000111111112 1222222222221 111 11121 134
Q ss_pred HHHHHHHHhcCChh---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 416 KYVITSLCRKGKTY---QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 416 ~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
+.+++.+-+.++.. +|+-+++...... +-|..+-..+|..|+-.|-+..|.++|..+.-..+..|...|.. ...+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHH
Confidence 56777888877765 4555555544432 22445556788889888999999999988865555545444432 2344
Q ss_pred HccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPN-ETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
.-.|++..+...++...+. ...+ ..+-..+..|| +.|.+.+..+
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~e 562 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPE 562 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHH
Confidence 5567777777777666542 1111 12223333344 4566555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=62.19 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
.....+...+...|++++|.+.|+.+...+.. +...|..+...+.+.|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34555666666777777777777776654433 56666677777777777777777777766642 33556666666677
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 528 AHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
...|++++|.+.+++..+.++.+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccch
Confidence 7777777777777777777766444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0062 Score=59.80 Aligned_cols=205 Identities=11% Similarity=0.075 Sum_probs=131.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHH----------HHHHhcCChHHHHHHHHHHHHCCC
Q 041458 130 IPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLV----------RGLCMLGNLNQSLQFLDRLIQKGL 199 (568)
Q Consensus 130 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----------~~~~~~g~~~~a~~~~~~m~~~~~ 199 (568)
.|.+..|..+.....+.-.++.|...|-+.... +....-..|- ..-+--|++++|.++|-+|-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--
Confidence 367888988888777777788887777665432 1221111111 1112248889999988877544
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHH
Q 041458 200 VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK-GGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNI 278 (568)
Q Consensus 200 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 278 (568)
...|..+.+.|++-.+.++++.--.. ...--...|+.+...+.....+++|.+.|..-.. ...
T Consensus 764 -------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~ 827 (1189)
T KOG2041|consen 764 -------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN 827 (1189)
T ss_pred -------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence 23456677788887776665431100 0001135688888888888899999998876432 133
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
.+.++.+..++++-+.+.+.+. .|....-.+.+++...|.-++|.+.|-+.-. | .+.+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 6777777778887777766654 3455667788888888988888877644321 1 345677888888
Q ss_pred HHHHHHHHHHH
Q 041458 359 VDLVVKCLDQM 369 (568)
Q Consensus 359 ~~~a~~~~~~~ 369 (568)
+.+|.++-.+.
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 88887765543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.5e-05 Score=60.70 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
.....+...+...|+.++|.+.|+.....+ +.+...+..+...+...|++++|..+++...+.+.. +...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 445556677778888888888888887754 335677788888888889999999988888776533 667777788888
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPNETTYT 521 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 521 (568)
...|++++|.+.+++..+. .|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 8899999999999888874 45544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00011 Score=69.54 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
...++..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..+.... +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 4445555666788888888888888753 44 3445777777788888888888888765333 67777777778888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 495 SRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.++.+.|.++.+++++. .| +..+|..|..+|...|+++.|...++.+-.....+..
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~ 303 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKY 303 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccch
Confidence 88889999999888874 45 5578888889999999999988888877655444433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0011 Score=56.82 Aligned_cols=197 Identities=14% Similarity=0.063 Sum_probs=146.8
Q ss_pred hcCCHHHHHHHHHHHhhC---C-CCCChhhHHH--HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 041458 355 SEGKVDLVVKCLDQMFHR---R-CKPNEGTYNG--LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKT 428 (568)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 428 (568)
...+.++..+++.+++.. + ..++..+..- ......+|+.+.|...++.+..+.+.... .-..-..-+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R-V~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR-VGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHhhch
Confidence 456788999999888753 3 3444444433 56677789999999999999887644322 222222335567999
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMM 508 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 508 (568)
++|.++++...+.. +.|.+++-.-+-..-..|+--+|++-+....+. +..|.+.|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999875 446677776666677778888998888887764 4559999999999999999999999999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCHHHHHH
Q 041458 509 IEKGQMP-NETTYTILVEGIAHQD---ELELSAEVLKELQLRQVVSESAVER 556 (568)
Q Consensus 509 ~~~g~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~ 556 (568)
+-. .| ++..+..+.+.+...| +.+.+++++.+.++..+.+.....-
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 874 55 6677777777766554 5677999999999998865544433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=66.28 Aligned_cols=151 Identities=18% Similarity=0.140 Sum_probs=116.5
Q ss_pred ChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 041458 377 NEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIR 455 (568)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 455 (568)
....|.....+...|.+++|+..++.+....+. |...+......+.+.++..+|.+.++++... .|+ ......+..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~ 382 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQ 382 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHH
Confidence 344455567778889999999999988776553 6677777788888999999999999988875 555 556677888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 041458 456 GLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELEL 535 (568)
Q Consensus 456 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 535 (568)
++.+.|++.+|..+++........ |+..|..|..+|...|+..++..-..+ .+.-.|+++.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHH
Confidence 899999999999999888866544 888899999999999988877665544 3556778888
Q ss_pred HHHHHHHHHHcCCC
Q 041458 536 SAEVLKELQLRQVV 549 (568)
Q Consensus 536 a~~~~~~~~~~~~~ 549 (568)
|...+....+....
T Consensus 444 A~~~l~~A~~~~~~ 457 (484)
T COG4783 444 AIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHHHHhccC
Confidence 88777777666533
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.7e-06 Score=48.44 Aligned_cols=33 Identities=33% Similarity=0.931 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPN 202 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 202 (568)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.5e-06 Score=47.91 Aligned_cols=33 Identities=42% Similarity=0.865 Sum_probs=21.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN 516 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 516 (568)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00033 Score=66.38 Aligned_cols=123 Identities=15% Similarity=0.224 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 041458 171 YNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK 250 (568)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 250 (568)
-..|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++.+.. .+.+..........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 3445555666677777777777777652 33 3444666666667777777777777654 23355555555666677
Q ss_pred cCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 041458 251 EGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGRWEEANELLAEMD 300 (568)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 300 (568)
.++++.|+.+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777665 333 3477777777777777777777776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00025 Score=57.95 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNALLL 490 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~ 490 (568)
|..++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+........|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 36778888888888877532211 12334455677788888888888888887553332 224445677
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
.+...|++++|...++..... ......+......+...|++++|+..|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788888888888888664432 234556667778888889999888888764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00046 Score=56.33 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCh--hHHHHHHHHHHcCCCHHH
Q 041458 216 ERGVHAAMKLLDDIIAKGGKP--NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNV--VSYNILLRSLCMEGRWEE 291 (568)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 291 (568)
.++...+...++.+....... .....-.+...+...|++++|...|+.+......|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555542111 0112222334555566666666666666554322211 122334555556666666
Q ss_pred HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
|+..++..... ......+....+.|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666553322 22333444555566666666666665554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=46.79 Aligned_cols=32 Identities=34% Similarity=0.690 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP 201 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 201 (568)
+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=46.60 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=16.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00033 Score=55.04 Aligned_cols=107 Identities=13% Similarity=0.019 Sum_probs=67.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQM--PNETTYTILV 524 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll 524 (568)
++..++..+...|++++|.+.|+.+.+.... .....+..+..++.+.|++++|.+.++.+....-. .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3455566666777777777777777643211 11345555677777777777777777777653111 1234566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCHHHHH
Q 041458 525 EGIAHQDELELSAEVLKELQLRQVVSESAVE 555 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 555 (568)
.++.+.|+.++|.+.++++++..+.+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 6777777777777777777777776555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00027 Score=52.72 Aligned_cols=94 Identities=20% Similarity=0.145 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041458 452 SLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD 531 (568)
Q Consensus 452 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 531 (568)
.+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 3444455555555555555555543221 23444455555555556666666665555532 223345555555555566
Q ss_pred ChhHHHHHHHHHHHcC
Q 041458 532 ELELSAEVLKELQLRQ 547 (568)
Q Consensus 532 ~~~~a~~~~~~~~~~~ 547 (568)
+++.|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 6666666655555433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.027 Score=52.65 Aligned_cols=443 Identities=12% Similarity=0.066 Sum_probs=219.5
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 041458 84 LQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 163 (568)
++=+++.. .+.|..+|-.|+.-+..++.+++.++++++|..- ++-=..+|...+.+-....++.....+|.+.....
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 44444433 3568999999999999999999999999999853 22234578888888778889999999999988764
Q ss_pred CCCcHHHHHHHHHHHHhcCCh------HHHHHHHHHHHH-CCCCCCH-hhHHHHHHH---HH------HcCCHHHHHHHH
Q 041458 164 YPTNTVTYNSLVRGLCMLGNL------NQSLQFLDRLIQ-KGLVPNA-FTYSFLLEA---AY------KERGVHAAMKLL 226 (568)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~-~~~~~~~-~~~~~li~~---~~------~~~~~~~a~~~~ 226 (568)
.+...|...+.---+.... ....+.|+-... .++.|-. ..|+..+.. .- .+.+++...+.+
T Consensus 107 --l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 --LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred --ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3577777777655444321 122233333332 2444432 334433322 22 233445566666
Q ss_pred HHHHHcCCCCCHhhHHH------HHHHHH-h--cC----ChHHHHHHHHHhhh--CCCC----CChhHHHHHHH------
Q 041458 227 DDIIAKGGKPNLVSYNV------LLTGLC-K--EG----RTEEAIRFFRDLPS--KGFE----PNVVSYNILLR------ 281 (568)
Q Consensus 227 ~~~~~~~~~~~~~~~~~------ll~~~~-~--~g----~~~~A~~~~~~~~~--~~~~----p~~~~~~~l~~------ 281 (568)
.+++...+..-...|+- =++-.. + .| -+-.|.+.++++.. .|.. .+..++|....
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 66654422111111211 111100 0 01 13345555555432 1211 12222222111
Q ss_pred -----HHHcC-----CC-HHH-HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 041458 282 -----SLCME-----GR-WEE-ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI 349 (568)
Q Consensus 282 -----~~~~~-----g~-~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (568)
--... |+ ..+ ..-++++.... +......|-.--.-+...++-+.|++..+.-. +..+. ....
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~sps-L~~~ 338 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPS-LTMF 338 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCc-hhee
Confidence 00000 00 000 00001111000 00111112111122233445555554443322 21221 2222
Q ss_pred H-HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH---hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041458 350 I-ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLC---GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRK 425 (568)
Q Consensus 350 i-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 425 (568)
+ ..|.-..+-+.....|+...+.- ..-+..+..-. ..|+++...+++-.-.. .-...|...+.+-.+.
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L----~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~ 410 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDL----KRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRK 410 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHH----HHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHH
Confidence 2 22333344444444444332110 00000000000 01122111111111111 1234466667776777
Q ss_pred CChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHccCChHHHHH
Q 041458 426 GKTYQAFQLLYEMTKYG-FTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNF-NALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 426 g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~ 503 (568)
.-.+.|..+|-+..+.| +.++..++++++.-++ .|+..-|.++|+.-... -||...| +..+.-+.+.++-..|..
T Consensus 411 ~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 411 RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 77788888888888777 5566777777777665 46777788887765543 2343333 445666677788788888
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 504 VFQMMIEKGQMPN--ETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 504 ~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+|+..+.+ +..+ ..+|..+++--..-|+...+..+-+++.+.-+.
T Consensus 488 LFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 488 LFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 88866654 3334 467777787777788887777777777766555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00051 Score=62.94 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChhhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK-KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRG 177 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 177 (568)
.+|..++....+.+..+.|+.+|.++.+.+. .+..+|......-.. .++.+.|.++|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566777777777777888888887775431 133334433333223 45556677777777665 55677777777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGLVPNA----FTYSFLLEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
+.+.++.+.|..+|++.... .+.. ..|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654 2233 36666676666777777777776666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00078 Score=64.12 Aligned_cols=104 Identities=12% Similarity=0.010 Sum_probs=75.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 497 (568)
-...+...|++++|++.|++.++... .+...|..+..+|...|++++|...++++.+.... +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 34556677888888888888887632 25667777788888888888888888888876443 66677788888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
+++|...|+++++. .|+.......+.
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 88888888888874 455444444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0006 Score=62.48 Aligned_cols=145 Identities=14% Similarity=0.053 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM-EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 57777888888888888899998887542 2244556555555333 56777799999888764 344778888888888
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhh
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPNE---TTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
.+.|+.+.|..+|++.+.. +.++. ..|...++-=.+.|+.+.+.++.+++.+.-+. ...+..++..|.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~-~~~~~~f~~ry~ 151 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE-DNSLELFSDRYS 151 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT-S-HHHHHHCCT-
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-hhHHHHHHHHhh
Confidence 8889999999999988865 33322 48888888888889999888888888887555 334444555444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.046 Score=54.06 Aligned_cols=206 Identities=12% Similarity=-0.019 Sum_probs=129.2
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhhHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCCC
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-GIIPDASSYTYL-------VNCLCKKGNVGYAMQLVEKMEDYGYPT 166 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~~~~~~~~ 166 (568)
.|.+..|..+.......-.++.|...|-+...- |++. +.-...+ ...-+--|++++|.+++-++.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 467788988887777777888888877665432 2210 0011111 111223588999999998887652
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 041458 167 NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK-GLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLL 245 (568)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 245 (568)
..|..+.+.|+|-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-.. ....+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 3467778888888877776531100 0011235677788888888888888888765432 12356
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChH
Q 041458 246 TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTD 325 (568)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (568)
.++.+..++++-+.+-+.+.+ +....-.+..++.+.|.-++|.+.+-+.. .| ...+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHH
Confidence 677777777777766666543 55566778888888888888887765432 11 13345566667777
Q ss_pred HHHHHHHH
Q 041458 326 HALKVLDE 333 (568)
Q Consensus 326 ~a~~~~~~ 333 (568)
+|.++-+.
T Consensus 896 ~avelaq~ 903 (1189)
T KOG2041|consen 896 EAVELAQR 903 (1189)
T ss_pred HHHHHHHh
Confidence 77766544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0046 Score=55.19 Aligned_cols=58 Identities=7% Similarity=0.023 Sum_probs=46.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEK--GQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5566788999999999999999874 223355677788899999999999988877654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00054 Score=65.24 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=65.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHH
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSS--GIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNS 173 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (568)
.+......++..+....+++.+..++-+.... ....-..+..++++.|.+.|..+.++.++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444555555555555555555555555443 1111223445556666666666666666655555565566666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE 216 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 216 (568)
||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666665555554444555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00046 Score=65.70 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041458 390 VGKVQEAFAIIQSLGNKQNS--SPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
..+++++..++.+....... .-..+..++|+.|.+.|..++++.++..=...|+-||..+++.|++.+.+.|++..|.
T Consensus 79 ~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~ 158 (429)
T PF10037_consen 79 KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAA 158 (429)
T ss_pred HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHH
Confidence 34445555555554443111 1122334555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
++...|...+.-.+..++.--+.+|.+
T Consensus 159 ~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 159 KVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555533333344444333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0014 Score=55.26 Aligned_cols=87 Identities=20% Similarity=0.104 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455566666667777777777777665432222 245666666667777777777777766654322 4455555566
Q ss_pred HHHccCChHH
Q 041458 491 GLCKSRRTDL 500 (568)
Q Consensus 491 ~~~~~g~~~~ 500 (568)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 6666665433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00043 Score=60.86 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=69.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHH
Q 041458 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDL 500 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 500 (568)
-+.+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+.....+.. -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4566777888888888777753 225666667777777888887777777777665333 35567777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
|++.|++.++ +.|+-.+|..=++
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 8877777776 5676666654443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.5e-05 Score=43.03 Aligned_cols=28 Identities=36% Similarity=0.873 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQK 197 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (568)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.2e-05 Score=42.78 Aligned_cols=28 Identities=39% Similarity=0.865 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 041458 240 SYNVLLTGLCKEGRTEEAIRFFRDLPSK 267 (568)
Q Consensus 240 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 267 (568)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0015 Score=52.34 Aligned_cols=96 Identities=11% Similarity=-0.008 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
.-.+...+...|++++|.++|+.+...++. +..-|..|.-++-..|++++|+..|..+...+ +.|+..+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334445556667777777777766655444 55666666666777777777777777766653 3455666666667777
Q ss_pred cCChhHHHHHHHHHHHcC
Q 041458 530 QDELELSAEVLKELQLRQ 547 (568)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~ 547 (568)
.|+.+.|++.|+..+..-
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 777777777777666544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=62.20 Aligned_cols=92 Identities=8% Similarity=-0.113 Sum_probs=69.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+...|++++|+..|+++....+. +...|..+..+|.+.|++++|+..++++++... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 55666778888888888888776554 556677777788888888888888888877532 2456777777888888888
Q ss_pred HHHHHHHHHHHhCC
Q 041458 464 EEALEIFVVMEEYD 477 (568)
Q Consensus 464 ~~a~~~~~~m~~~~ 477 (568)
++|...|+...+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00092 Score=49.72 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4456667777888888888888887653 223466777788888888888898888888765433 45677788888888
Q ss_pred cCChHHHHHHHHHHHHC
Q 041458 495 SRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~ 511 (568)
.|+.++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888887653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00083 Score=49.75 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=12.3
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSL 283 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~ 283 (568)
.+.+|+.|...+++|+..+|+.++..+
T Consensus 88 LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 88 LLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 334444444444444444444444433
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0088 Score=55.15 Aligned_cols=159 Identities=12% Similarity=0.004 Sum_probs=72.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh-----------hhHHHHHH
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ-----------EFYKYVIT 420 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~ 420 (568)
++.-.|+.++|.+.-..+++.....-...+.-...+.-.++.+.|...|++....++.-.. ..|..-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 4455666666666665555543322222222222233345555555555555443221100 01111222
Q ss_pred HHHhcCChhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 041458 421 SLCRKGKTYQAFQLLYEMTKY---GFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 497 (568)
-..+.|++..|.+.+.+.+.. +.+|+...|.....+..+.|+.++|+.--+...+.+.. =...|..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHH
Confidence 334566666666666666542 12333344444445555666666666655555543100 01112222233444556
Q ss_pred hHHHHHHHHHHHHC
Q 041458 498 TDLSLEVFQMMIEK 511 (568)
Q Consensus 498 ~~~a~~~~~~m~~~ 511 (568)
+++|.+-++...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666665553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00099 Score=58.70 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=106.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGL 462 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 462 (568)
..-+.+.+++++|+..|.+..+..+. |.+.|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 45678899999999999999988665 7788888899999999999999999888874 454 5689999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHH-HHHccCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041458 463 IEEALEIFVVMEEYDYKPDVDNFNALLL-GLCKSRRTD---LSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
+++|.+.|++..+. .|+-.+|-.=+. +--+.+..+ .+..-++.....|..||...... ...-+-.....
T Consensus 165 ~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~-----~~l~nnp~l~~ 237 (304)
T KOG0553|consen 165 YEEAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN-----GDLMNNPQLMQ 237 (304)
T ss_pred HHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc-----cccccCHHHHH
Confidence 99999999998875 566666544333 333333333 44444444444555565433211 12222334455
Q ss_pred HHHHHHH
Q 041458 539 VLKELQL 545 (568)
Q Consensus 539 ~~~~~~~ 545 (568)
....|..
T Consensus 238 ~~~~m~~ 244 (304)
T KOG0553|consen 238 LASQMMK 244 (304)
T ss_pred HHHHHhh
Confidence 5666665
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0013 Score=48.77 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=47.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQKGL-VPNAFTYSFLLEAAYKER--------GVHAAMKLLDDIIAKGGKPNLVSYNVL 244 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (568)
.|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 566666666666555421 233556677777777777777777777
Q ss_pred HHHHHh
Q 041458 245 LTGLCK 250 (568)
Q Consensus 245 l~~~~~ 250 (568)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0031 Score=49.37 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFT-P-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PDVDNFNALLL 490 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~ 490 (568)
+-..+..+.+.|++++|.+.|.++.+.... + ....+..+..++...|++++|.+.|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 445566677778888888888887764211 1 1235566777888888888888888887754222 12456777777
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~ 511 (568)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 888888888888888888875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00012 Score=53.21 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 041458 461 GLIEEALEIFVVMEEYDYK-PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
|++++|+.+++++.+.... ++...+..+..+|.+.|++++|.+++++ .+ ..| +......+..++.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555433221 1233333345555555555555555544 21 111 11222233444555555555555
Q ss_pred HHHH
Q 041458 539 VLKE 542 (568)
Q Consensus 539 ~~~~ 542 (568)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=52.52 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=62.3
Q ss_pred cCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 425 KGKTYQAFQLLYEMTKYGFT-PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|.++++. .+.+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999986432 2455666689999999999999999988 332222 34555566889999999999999
Q ss_pred HHHHH
Q 041458 504 VFQMM 508 (568)
Q Consensus 504 ~~~~m 508 (568)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.007 Score=60.35 Aligned_cols=141 Identities=11% Similarity=0.027 Sum_probs=96.2
Q ss_pred CCCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhc--------CCHHHHHHHHHH
Q 041458 407 QNSSPQEFYKYVITSLCRK-----GKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCME--------GLIEEALEIFVV 472 (568)
Q Consensus 407 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~ 472 (568)
....+...|...+.+.... ++...|..+|++.++. .|+ ...+..+..++... .++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3445667777777775432 2366888888888875 555 34454444433221 123344444444
Q ss_pred HHhC-CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 473 MEEY-DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 473 m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
.... ....+...|..+.-.+...|++++|...++++++. .|+...|..+...+...|+.++|...+++....++.++
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3332 12335567777766677789999999999999985 47888888889999999999999999999999988855
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0055 Score=51.74 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444555555555555555555543322211 2345555555555555555555555555431 1133444444444
Q ss_pred HHhcCC--------------hhHHHHHHHHHHHcCCCC
Q 041458 527 IAHQDE--------------LELSAEVLKELQLRQVVS 550 (568)
Q Consensus 527 ~~~~g~--------------~~~a~~~~~~~~~~~~~~ 550 (568)
+...|+ +++|.+++++..+.++.+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 444444 345555555555555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0032 Score=50.54 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=38.5
Q ss_pred HHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH
Q 041458 281 RSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVD 360 (568)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 360 (568)
.-+...|++++|..+|+.+...+ +.+..-|-.|..++-..|++++|+..|......++ -|+..+-.+..++...|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHH
Confidence 33444444444444444444332 22333444444444444444444444444444332 13344444444444444444
Q ss_pred HHHHHHHHHh
Q 041458 361 LVVKCLDQMF 370 (568)
Q Consensus 361 ~a~~~~~~~~ 370 (568)
.|++.|+..+
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00057 Score=46.69 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=34.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
...+...|++++|.+.|+++++.. +-+...+..+..++...|++++|..+++++++..|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345556666666666666666542 2244555566666666666666666666666655543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.022 Score=50.87 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=24.8
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhH---HHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQA---TNLLYDLCKANKMKKAIKVMEMMVSS 127 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~ 127 (568)
+.|++++|...|+.+....+.+ .... -.+..++.+.++++.|...+++..+.
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455555555555555542221 1111 22344445555555555555555554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.011 Score=54.51 Aligned_cols=207 Identities=13% Similarity=0.148 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKG----RFRPS-AASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG 383 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (568)
..|......|...+++++|.+.|.+..+. +-+.+ ...|......| +..++++|...+++..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~------------- 101 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI------------- 101 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH-------------
Confidence 34566666666777777777777665431 10000 01111112222 2224444444444332
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHC----CCCCC--hhhHHHHHHH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRK-GKTYQAFQLLYEMTKY----GFTPD--SYTYSSLIRG 456 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~ 456 (568)
..|...|++..|-..+.. +...|... |++++|++.|++..+. | .+. ...+..+...
T Consensus 102 -~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 102 -EIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred -HHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 345555555555444433 34445555 7778888777766542 2 111 2345666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-----hh-hHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 041458 457 LCMEGLIEEALEIFVVMEEYDYKPD-----VD-NFNALLLGLCKSRRTDLSLEVFQMMIEK--GQMPN--ETTYTILVEG 526 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~p~-----~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~ 526 (568)
+.+.|++++|.++|++....-...+ .. .|...+-++...|++-.|.+.+++.... ++..+ ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 7788888888888877765322211 11 2233344556677788888888777653 12222 3455556665
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 041458 527 IAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~ 547 (568)
| ..|+.+.-...+.+--...
T Consensus 245 ~-~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 245 Y-EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp H-HTT-CCCHHHHCHHHTTSS
T ss_pred H-HhCCHHHHHHHHHHHcccC
Confidence 5 3456665555554444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0037 Score=52.57 Aligned_cols=112 Identities=9% Similarity=-0.024 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCChhhHHHH
Q 041458 79 LNDAFLQLERMVS-KGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIP--DASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 79 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
+..+...+..+.+ .+.......|..+...+...|++++|+..|+........+ ...++..+...+...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444455555532 2222235566777777888899999999999887653222 234677788888888999999988
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHH-------hcCChHHHHHHH
Q 041458 156 VEKMEDYGYPTNTVTYNSLVRGLC-------MLGNLNQSLQFL 191 (568)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~~~a~~~~ 191 (568)
+++..+. .+.....+..+...+. ..|+++.|...+
T Consensus 95 ~~~Al~~-~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 95 YFQALER-NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHh-CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 8888765 2334455666666665 445555444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0034 Score=52.77 Aligned_cols=80 Identities=20% Similarity=0.086 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|.+.++........ ....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 3345555555566666666666666654422211 235566666666666666666666666543221 2334444444
Q ss_pred HHH
Q 041458 491 GLC 493 (568)
Q Consensus 491 ~~~ 493 (568)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0088 Score=46.25 Aligned_cols=91 Identities=19% Similarity=0.065 Sum_probs=44.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHc
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PDVDNFNALLLGLCK 494 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~ 494 (568)
..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445555666666666666665554432 224445555555666666666666555532111 011111222334455
Q ss_pred cCChHHHHHHHHHHH
Q 041458 495 SRRTDLSLEVFQMMI 509 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~ 509 (568)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 556666555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.029 Score=51.75 Aligned_cols=168 Identities=17% Similarity=0.122 Sum_probs=87.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC--C-CC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGI--I-PD--ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~--~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
....|...|++++|.+.|....+... . +. ...|.....+|.+. ++++|.+.+ ...+..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~---------------~~A~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY---------------EKAIEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH---------------HHHHHHH
Confidence 34566777888888888776643210 0 00 11122222222222 444444433 3344556
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcC
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE-RGVHAAMKLLDDIIAK----GGK-PNLVSYNVLLTGLCKEG 252 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g 252 (568)
...|++..|-+.+..+- ..|-.. |+++.|.+.|++..+. +.+ .-..++..+...+.+.|
T Consensus 105 ~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 66676666666555543 234444 6777777777766542 110 01234556667778888
Q ss_pred ChHHHHHHHHHhhhCCCC-----CChh-HHHHHHHHHHcCCCHHHHHHHHHHhccC
Q 041458 253 RTEEAIRFFRDLPSKGFE-----PNVV-SYNILLRSLCMEGRWEEANELLAEMDGG 302 (568)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 302 (568)
++++|.++|+++...... .+.. .+-..+-++...|+...|.+.+++....
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888877654222 1121 2223344566678888888888887654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0022 Score=54.01 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 041458 82 AFLQLERMVSKGHKPDVVQATNLLYDLCK-----ANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLV 156 (568)
Q Consensus 82 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 156 (568)
-...|++... -..+..+|..++..|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|
T Consensus 33 ~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 33 HEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred hHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3444554422 24577778888877763 35666666667777777777777777777766554 2211 11111
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 041458 157 EKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERG 218 (568)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 218 (568)
+.+- --| -.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 109 Q~~F---------------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEF---------------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHh---------------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 111 12345667777777777777777777777777766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0036 Score=52.78 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----------------CCHHHHHHH
Q 041458 411 PQEFYKYVITSLCR-----KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME----------------GLIEEALEI 469 (568)
Q Consensus 411 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~~~ 469 (568)
+..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55556666666653 356666666777777778877888888887776442 123456677
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccC
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSR 496 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g 496 (568)
+++|...|+.||.+++..+++.+++.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 777777777777777777777775554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00096 Score=46.24 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCC
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD-ELELSAEVLKELQLRQV 548 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~ 548 (568)
+...|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|.+.+++.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666777777777777777777777642 234566666666777777 57777777777666543
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.16 Score=47.95 Aligned_cols=441 Identities=12% Similarity=0.132 Sum_probs=207.7
Q ss_pred hccCChHHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHh
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPD------VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVN--CLCK 145 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 145 (568)
.+.+++.+|..+|.+..+.- ..+ ...-+.++++|.. ++.+..........+.. | ...|-.+.. .+-+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 46789999999999886642 222 2234567777765 45666666666666542 2 233444443 3347
Q ss_pred cCChhhHHHHHHHHHhC--CCCC------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHhhHH
Q 041458 146 KGNVGYAMQLVEKMEDY--GYPT------------NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK----GLVPNAFTYS 207 (568)
Q Consensus 146 ~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~ 207 (568)
.+.+++|.+.+..-... +..+ |...=+..+.++...|++.++..+++++... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899998887665543 2111 2222356677888999999999999888754 3446788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 041458 208 FLLEAAYKERGVHAAMKLLDDIIAK---GGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLC 284 (568)
Q Consensus 208 ~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 284 (568)
.++-.+.+ ..|-++.+. .+-| -|.-++-.|.+.=..-++.. -..+.|.......++....
T Consensus 172 ~~vlmlsr--------SYfLEl~e~~s~dl~p---dyYemilfY~kki~~~d~~~------Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSR--------SYFLELKESMSSDLYP---DYYEMILFYLKKIHAFDQRP------YEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhH--------HHHHHHHHhcccccCh---HHHHHHHHHHHHHHHHhhch------HHhhCcHHHHHHHHHHHHH
Confidence 76555443 233333222 1111 12333333332211111100 0011222222222222221
Q ss_pred cC--CCHHHHHHHHHHhccCCCCcCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCcccHHHHHHHHHhcC
Q 041458 285 ME--GRWEEANELLAEMDGGDRSPTIV-TYNILIGSLAYHGKTDHALKVLDEMVKGRFR----PSAASYNPIIARLCSEG 357 (568)
Q Consensus 285 ~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~ 357 (568)
-. .+..--+++++.....-+.|+.. +...+...+.+ +.+++..+-+.+....+. -=..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11112222232222222333321 12222222222 333333332222211100 01233444555555555
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHH--------HHHHHh----CCCHHHHHHHHHHHhhCCCCCChhhHHHHHH---HH
Q 041458 358 KVDLVVKCLDQMFHRRCKPNEGTYNG--------LAMLCG----VGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT---SL 422 (568)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~ 422 (568)
+...|.+.+.-+....+. .....- ....|. ..+...-+.+++.....+.. .......++. -+
T Consensus 313 ~T~~a~q~l~lL~~ldp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhcCCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH
Confidence 555555555544433221 111000 011110 11122223333333333221 1112222222 23
Q ss_pred HhcCC-hhHHHHHHHHHHHCCCCC-Chhh----HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC----hhhHHHHH
Q 041458 423 CRKGK-TYQAFQLLYEMTKYGFTP-DSYT----YSSLIRGLCM---EGLIEEALEIFVVMEEYDYKPD----VDNFNALL 489 (568)
Q Consensus 423 ~~~g~-~~~A~~~~~~~~~~~~~p-~~~~----~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li 489 (568)
-+.|. -++|+.+++...+- .| |... +..+=.+|.. ...+.+-..+-+-+.+.|+.|- ...-|.|.
T Consensus 390 W~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 34444 67788888777653 22 2222 2122223322 2233444444444456676653 33445554
Q ss_pred HH--HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 490 LG--LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 490 ~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
++ +...|++.++.-.-.=+.+ +.|++.+|..+.-+.....++++|..++.++--
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 43 4567788777654433333 678888888887777788888888888877654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00091 Score=46.19 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 459 MEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..|++++|.++|+.+.+..+. +...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555443222 444444555555555555555555555544
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.029 Score=50.02 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=65.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR---RTDLSLEVFQMMIEKGQMPNETTYTI 522 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ 522 (568)
|...|..|...|...|+++.|...|....+...+ |...+..+..++.... ...++.++|++++..+ +-|......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 5667777777777777777777777776654332 5556666655544332 3456777777777642 335555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 523 LVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
|...+...|++++|...|+.|.+..+.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 66667777777777777777777666633
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.027 Score=56.26 Aligned_cols=135 Identities=15% Similarity=0.078 Sum_probs=76.3
Q ss_pred CCCHhhHHHHHHHHHhc--C---ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc--------CChHHHHHHHHHHHH
Q 041458 130 IPDASSYTYLVNCLCKK--G---NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCML--------GNLNQSLQFLDRLIQ 196 (568)
Q Consensus 130 ~~~~~~~~~li~~~~~~--g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~ 196 (568)
+.|...|...+++.... + ....|..+|++..+.. |-....|..+..++... .+...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 34556666665553322 1 2456666666666642 22233444333333221 112334444444333
Q ss_pred C-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 041458 197 K-GLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK 267 (568)
Q Consensus 197 ~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 267 (568)
. ....+...|..+.-.....|++++|...+++.+... |+...|..+...+...|+.++|.+.+++....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2 123345566666555566788888888888877763 46777777777888888888888888777655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.01 Score=53.48 Aligned_cols=102 Identities=9% Similarity=0.018 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----CHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP----NETTYTI 522 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~ 522 (568)
.|...+....+.|++++|...|+.+.+..+... ...+..+..+|...|++++|...|+.+++. .| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 344444444556778888888877775422211 245667777788888888888888888764 22 2345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 523 LVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
+...+...|+.++|.++++++++..+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 566677788888888888888888777554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0015 Score=44.55 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=37.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
+...+...|++++|.+.|+.+.+..+. +...+..+..++...|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566677777777777777765433 566666677777777777777777777665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.041 Score=47.83 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=24.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHH
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPN----ETTYTILVEGIAHQDELELS 536 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a 536 (568)
+...|.+.|.+..|..-++.+++. -|+ ...+..++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 345566666666666666666653 222 23445555666666665533
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=45.55 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=32.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
..|++++|+++|+++.+. .+-+...+..+..+|.+.|++++|.++++++....+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 456666666666666654 12255555556666666666666666666666666554
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.19 Score=46.80 Aligned_cols=263 Identities=12% Similarity=0.008 Sum_probs=151.9
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
+.+.+..++.+|+..+...+...+. ++.-|..-...+...+++++|.--.+.-.+.... ......-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 4566788899999999988887433 5666666666777777888776555444432100 1112222223333333333
Q ss_pred hHHHHHH---------------HHHhCC-CCCcHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041458 151 YAMQLVE---------------KMEDYG-YPTNTVTYNSL-VRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAA 213 (568)
Q Consensus 151 ~a~~~~~---------------~~~~~~-~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 213 (568)
+|.+.++ ...... -+|....|..+ ..++.-.|+.++|.++--..++.... +......--.++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence 3332222 111111 11223333332 34556678888888887777665311 222222222334
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC-----------HhhHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCChhHHHHH
Q 041458 214 YKERGVHAAMKLLDDIIAKGGKPN-----------LVSYNVLLTGLCKEGRTEEAIRFFRDLPSK---GFEPNVVSYNIL 279 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l 279 (568)
.-.++.+.+...|++.+..+.... ...+..-..-..+.|.+..|.+.|.+.+.. ..+|+...|...
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 456788888888888776532110 011222233456788899999999887764 345566677777
Q ss_pred HHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 280 LRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 280 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
..+..+.|+.++|+.--++..+.+ +.-...+..-..++...+++++|.+-|++..+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777888899999888887776543 111223333344666678888888888877664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.056 Score=46.96 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=20.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCH---HHHHHHHHhhhhcC
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVVSE---SAVERLVMQYDFEG 565 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 565 (568)
..-|.+.|.+..|..-++.+++..+.+. .++..++..|..-|
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 4445555666666666666665555522 33344444444433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.022 Score=50.79 Aligned_cols=111 Identities=12% Similarity=0.168 Sum_probs=89.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCChhhHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME---GLIEEALEIFVVMEEYDYKPDVDNFNA 487 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ 487 (568)
|...|-.|...|...|+...|...|.+..+.. .++...+..+..++... .+..++.++|+++...+.. |+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 77889999999999999999999999998862 34667777777776554 3467899999999987655 7888888
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
|...+...|++.+|...|+.|.+. -|....+..++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 889999999999999999999986 343344444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.12 Score=44.86 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH----
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLL---- 245 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---- 245 (568)
+.++++..+.-.|.+.-...++.+.++...+.++.....+.+...+.||.+.|...|++..+...+.|....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555555555555555555555444455555555555566666666666666554432233333333222
Q ss_pred -HHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccC
Q 041458 246 -TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGG 302 (568)
Q Consensus 246 -~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 302 (568)
..|.-.+++.+|...|.++...... |...-|.-.-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2334455666666666655544221 3333333333333346666666666666654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=44.57 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR-RTDLSLEVFQMMIE 510 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 510 (568)
..+|..+...+...|++++|+..|++..+.... +...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555566666666666666666666654333 4555666666666666 46666666666554
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.055 Score=41.89 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=25.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIPD--ASSYTYLVNCLCKKGNVGYAMQLVEKMED 161 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 161 (568)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555555443321 12233333444445555555555544443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.092 Score=43.09 Aligned_cols=122 Identities=16% Similarity=0.037 Sum_probs=63.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT-PDSYTYSSLIRGLCMEGL 462 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~ 462 (568)
...+...|+..+|...|++....-.-.|....-.+..+....+++.+|...++++.+.... -++.+...+...+...|.
T Consensus 96 a~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~ 175 (251)
T COG4700 96 ANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK 175 (251)
T ss_pred HHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC
Confidence 4555566666666666666555444445555555566666666666666666665553210 012233455555666666
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 463 IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
+++|...|+.....-. +...-......+.+.|+.+++..-+..
T Consensus 176 ~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 176 YADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred chhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 6666666666655422 222222223334555555554443333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.14 Score=50.37 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=16.1
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 041458 490 LGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.+|-++|+..+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3566778888888888887653
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.44 Score=46.89 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS-SYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
.|..++.---.....+.+..++..+... .|-.. -|-.....-.+.|..+.+.++|++-... ++.....|...+..+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3444443333333334444555544432 12222 2333333334455555556666555542 444455555444433
Q ss_pred H-hcCChHHHHHHHHHHHHC-CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 041458 179 C-MLGNLNQSLQFLDRLIQK-GLV-PNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 179 ~-~~g~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
. ..|+.+...+.|+...+. |.. .....|...|..-..++++.....+++++++.
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 3 234555555555555442 211 12334455555555555555555555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.55 Score=48.01 Aligned_cols=142 Identities=17% Similarity=0.176 Sum_probs=85.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChH
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLN 185 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (568)
..+.+.|++++|...|-+.+.. + + -..+|.-|....+..+--.+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-l--e---~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-L--E---PSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-C--C---hHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3345778888888777665532 1 1 134455556666666667777777777764 5555667888888888887
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 186 QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 186 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
+-.+..+... .|.. ..-....+..+.+.+-.++|..+-.+... .......++ -..+++++|++.+..+.
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7776665543 2211 11234456666666666666555443321 233333333 34677888888887764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.31 Score=45.08 Aligned_cols=280 Identities=12% Similarity=0.063 Sum_probs=142.4
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhHHHHHHHH--HHcCCCHHHHHHHHHHhccCCCCcCHhh--HHHHHHHHHhcCChHH
Q 041458 251 EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRS--LCMEGRWEEANELLAEMDGGDRSPTIVT--YNILIGSLAYHGKTDH 326 (568)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 326 (568)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+-|... |.... ...|.-...+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45555555554443211 12233333333333 23356666666666666532 11111 1122222234566666
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhHHH-HHHH-----HhCCCHHHHHHH
Q 041458 327 ALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRC-KPNEGTYNG-LAML-----CGVGKVQEAFAI 399 (568)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~-~~~~-----~~~~~~~~a~~~ 399 (568)
|..+-+..-..-.. -...+...+...+..|+++.|+++++.-....+ .++..--.- +..- .-..+...|...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 66665555443211 334556666666677777777766665544322 222221111 1111 112334444444
Q ss_pred HHHHhhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH---h
Q 041458 400 IQSLGNKQNSSPQEF-YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME---E 475 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~---~ 475 (568)
-.+..+. .||.+. --.-..++.+.|+..++-.+++.+-+.. |....+ .+..+.+.|+.. ..-+++.. .
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gdta--~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGDTA--LDRLKRAKKLES 323 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCCcH--HHHHHHHHHHHh
Confidence 4443332 222211 1223456778888888888888887763 333332 233344555432 22222222 2
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHc
Q 041458 476 YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH-QDELELSAEVLKELQLR 546 (568)
Q Consensus 476 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 546 (568)
.. +.+.+....+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++++++-+.++.
T Consensus 324 lk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 21 12566666777777788888777776666655 47777777777665544 48888888888777654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0095 Score=41.69 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=30.7
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
.|.+.+++++|.+++++++..+ +.+...|......+.+.|++++|.+.+++..+..+.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3445555555555555555531 22444444455555555555555555555555555433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.39 Score=44.48 Aligned_cols=298 Identities=14% Similarity=0.102 Sum_probs=140.6
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 041458 171 YNSLVRGLCM--LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEA--AYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLT 246 (568)
Q Consensus 171 ~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 246 (568)
|.+|-.++.. .|+-..|.++-.+..+. +.-|..-.--++.+ ..-.|+.+.|.+-|+.|... +.+-..=++
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHH
Confidence 4444444433 35666666655544321 22233333333332 23356666666666666542 222222222
Q ss_pred H----HHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC-CCcCHhhH--HHHHHHHH
Q 041458 247 G----LCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGD-RSPTIVTY--NILIGSLA 319 (568)
Q Consensus 247 ~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~~ 319 (568)
+ .-+.|..+.|.++-++.-..-.. -...+...+...+..|+++.|+++++.-+... +.++..-- ..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2 13456666666665555433111 23455566666666666666666665543322 12222111 11111110
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAI 399 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 399 (568)
.. .-..+...|...-.+..+..+..-.........+.+.|+..++-.+
T Consensus 238 ~s--------------------------------~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 238 MS--------------------------------LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HH--------------------------------HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhH
Confidence 00 0011223333333333322211112222224455555555555556
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041458 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY-GFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYD 477 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 477 (568)
++.+-+..+.|+. ...|.+..--+.++.-+++..+. .++|| ......+..+-...|++..|..--+....
T Consensus 286 lE~aWK~ePHP~i------a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 286 LETAWKAEPHPDI------ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred HHHHHhcCCChHH------HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 6555555444432 12233333333333333333221 13443 45666677777778888777766665554
Q ss_pred CCCChhhHHHHHHHHHcc-CChHHHHHHHHHHHHCCCCC
Q 041458 478 YKPDVDNFNALLLGLCKS-RRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 478 ~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p 515 (568)
..|....|..|.+.-... |+-.++...+-+.++..-.|
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 356677777777655444 88888888888877653333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.71 Score=46.61 Aligned_cols=107 Identities=14% Similarity=0.070 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
.+--+..+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-.++-+.+. .+.-|...+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 4444555555666666666555543 4455555555666666666665444433222 23445555666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041458 495 SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (568)
.|+.++|.+++-+.... . -...+|.+.|++.+|.+..
T Consensus 757 ~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 66666666665543211 1 2344555666666555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.47 Score=44.74 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 515 PNETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
.|.-.+..++.++.-.|+.++|.+.+++|.+..+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 345555667777778888888888888888776553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.048 Score=44.51 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=26.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
.++..+...|++++|.++.+.+.... +-|...|..++.++...|+...|.++++++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444445555555555555555431 224445555555555555555555555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.48 Score=44.15 Aligned_cols=109 Identities=21% Similarity=0.221 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 353 (568)
.+.+..+.-+...|+...|.++-.+.. .||..-|-..+.+++..+++++-.++... +-++..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 355566777788899999988887775 57888999999999999999987765322 23678899999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHH
Q 041458 354 CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQ 401 (568)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 401 (568)
.+.|+..+|..++.++. + -.-+..|.++|++.+|.+.--
T Consensus 248 ~~~~~~~eA~~yI~k~~------~---~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP------D---EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHhCC------h---HHHHHHHHHCCCHHHHHHHHH
Confidence 99999999988877621 1 222666777777777765433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.012 Score=41.23 Aligned_cols=56 Identities=23% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 455 RGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
..|.+.+++++|.++++.+...++. +...|.....++.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566677777777777777765444 5666666777777777777777777777764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.039 Score=49.70 Aligned_cols=100 Identities=19% Similarity=0.128 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS----YTYSSLIRGLCMEGLIEEALEIFVVMEEYDY--KPDVDNFNA 487 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ 487 (568)
.|...+..+.+.|++++|...|+.+++. .|+. ..+..+...|...|++++|...|+.+.+.-+ ......+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3555554445668888888888888875 3443 3566778888888999999999988875321 113445556
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
+...+...|+.++|.+++++.++. .|+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 677788889999999999988874 4543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.13 Score=41.79 Aligned_cols=87 Identities=9% Similarity=0.055 Sum_probs=44.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 041458 457 LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELS 536 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 536 (568)
+...|++++|..+|+-+.-.++. |..-|..|..++-..+++++|+..|......+ .-|+...-.....+...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34455556665555555544333 44445555555555555555555555554432 12333333444455555555555
Q ss_pred HHHHHHHHH
Q 041458 537 AEVLKELQL 545 (568)
Q Consensus 537 ~~~~~~~~~ 545 (568)
+..|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555555
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.45 Score=47.01 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=34.0
Q ss_pred HHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 041458 102 TNLLYDLCKAN--KMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEK 158 (568)
Q Consensus 102 ~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 158 (568)
+.-=.+|.+-+ .+-+.+.-++++.++|-.|+... +...++-.|.+.+|-++|.+
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 33344555444 34445556677888887777643 33456677888888888754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.33 Score=40.02 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=53.2
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHH
Q 041458 131 PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPNAFTYSFL 209 (568)
Q Consensus 131 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l 209 (568)
|.+.---.|..+....|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+... ...+.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 334444445555566666666666666555433444555555555555566666666666665554321 0112233334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 041458 210 LEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 210 i~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
.+.+...|...+|+..|+.....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 45555556666566666555554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.016 Score=53.38 Aligned_cols=131 Identities=12% Similarity=-0.010 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh----hCCCC-CChhHHHHHHHHHHcCCCHHHHHHHHHHhcc----CC-CCcCHhh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLP----SKGFE-PNVVSYNILLRSLCMEGRWEEANELLAEMDG----GD-RSPTIVT 310 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~ 310 (568)
|..|...|.-.|+++.|+...+.-. +-|-+ .....+..+..++.-.|+++.|.+.|+.... .| -......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444445566666655443321 11111 1223455566666666666666666654321 11 1122344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKG-----RFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
..+|.+.|.-..++++|+.++.+-+.- +..-....+-++..+|...|..++|+.+.+..++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666666666666666665543210 1111334555666666667777766666555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.53 Score=41.18 Aligned_cols=135 Identities=8% Similarity=-0.014 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH--
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIA-- 351 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-- 351 (568)
...+.++.+....|.+.-...++.+..+...+.++.....|.+.-.+.|+.+.|...|++..+..-+.|..+.+.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777777788888888888887776666777888888888888888888888887765544445555544442
Q ss_pred ---HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 041458 352 ---RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQN 408 (568)
Q Consensus 352 ---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (568)
.|.-.+++..|...+.++...........-+-.....-.|+..+|.+.++.+.+..+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334455566666666666554322222222223333334556666666666655533
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.052 Score=50.26 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhc----cCCC-CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCc
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMD----GGDR-SPTIVTYNILIGSLAYHGKTDHALKVLDEMVK----GR-FRPSA 343 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~ 343 (568)
..|..|-..|.-.|+++.|+...+.-. +.|- ......+..+.+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777889999987766532 2221 12345677888999999999999998876542 22 12344
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
.+..++.+.|.-..++++|+.++.+-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 556667777777778888888776554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.66 Score=40.72 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=105.5
Q ss_pred CChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 041458 376 PNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSS--PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSL 453 (568)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 453 (568)
|....|+....-.+.|++++|...|+.+....+.. ...+.-.++.++-+.++.++|+..+++.++.-..-...-|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 34444555666666777777777777776654432 2244455566677788888888888877765322223334444
Q ss_pred HHHHHh-------cCCHHHHHHHHH---HHHhC----CCCCChhh------------HHHHHHHHHccCChHHHHHHHHH
Q 041458 454 IRGLCM-------EGLIEEALEIFV---VMEEY----DYKPDVDN------------FNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 454 ~~~~~~-------~g~~~~a~~~~~---~m~~~----~~~p~~~~------------~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
+.+.+. ..|...+.+.+. +..+. ...||... =..+.+-|.+.|.+-.|..-+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 444432 233333333333 33321 22233222 12345678899999999999999
Q ss_pred HHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 508 MIEKGQMPN---ETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 508 m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
|++. .+-+ ...+-.+..+|.+.|..++|.+.-+-+....+.+
T Consensus 193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9986 3322 3556677889999999999988766665555543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.064 Score=41.98 Aligned_cols=52 Identities=10% Similarity=-0.012 Sum_probs=30.8
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE-KGQMPNETTYTILVEGIA 528 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~ 528 (568)
...|+..+..+++.+|+..|++..|.++++...+ .+++-+..+|..|+.-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666666666666666666666666666554 245555666666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.5 Score=44.49 Aligned_cols=331 Identities=11% Similarity=0.061 Sum_probs=163.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 041458 138 YLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNL--NQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK 215 (568)
Q Consensus 138 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 215 (568)
.+|+-+...+.+..|+++-..+...-.. +..+|......+.+..+. +++.+..++=.+.. .-+..+|..+......
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHh
Confidence 3455566667777777776555432111 145566666666655321 22222222222111 1345667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCC----CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH
Q 041458 216 ERGVHAAMKLLDDIIAKGGK----PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE 291 (568)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 291 (568)
.|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+.++- +...+... ..+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchh
Confidence 77777777766543222111 122233445555666777777666666655430 11111111 122344
Q ss_pred HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHH-HHH----HHCCCCCCcccHHHHHHHHHhcCCHHHH----
Q 041458 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVL-DEM----VKGRFRPSAASYNPIIARLCSEGKVDLV---- 362 (568)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a---- 362 (568)
|..+|.+..+.. |.. .+-+.|.+..+...+-.+. +.. ...+..|+ .......+.+.....-.
T Consensus 591 a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 591 ALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence 445554443311 110 1111121111111111110 000 00111111 22222333332221111
Q ss_pred ------HHHHHHHhh-CCC-CCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 041458 363 ------VKCLDQMFH-RRC-KPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQL 434 (568)
Q Consensus 363 ------~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 434 (568)
+++.+.+.. .+. ..|...-..+..+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 111111111 111 223333333666667777777776655544 35777777778888888888877776
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 435 LYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 435 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
-+.+. .+.-|.-.+.+|.+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.++--+
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 65443 2556777888899999999999988765532 1 456778888888888776433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.7 Score=40.58 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=29.0
Q ss_pred hccCChHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 74 HRDHKLNDAFLQLERMVSKGHK--PDVVQATNLLYDLCKANKMKKAIKVMEMMVSS 127 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 127 (568)
.+.|++++|...|+.+....+- -...+.-.++.++-+.++++.|+...++..+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456666666666666554221 12223333445555666666666666665554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.078 Score=41.49 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=68.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHH---------------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTK---------------YGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME- 474 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~- 474 (568)
|..++..++.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|.++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788899999999999999888876521 1245778888999999999999999999999887
Q ss_pred hCCCCCChhhHHHHHHHHHcc
Q 041458 475 EYDYKPDVDNFNALLLGLCKS 495 (568)
Q Consensus 475 ~~~~~p~~~~~~~li~~~~~~ 495 (568)
..+++.+...|..|+.-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 678888888898888754443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.23 Score=40.51 Aligned_cols=111 Identities=24% Similarity=0.331 Sum_probs=75.5
Q ss_pred ChhhHHHHHH---HHHhcCChhHHHHHHHHHHHC--C-CCCChh--h----------------HHHHHHHHHhcCCHHHH
Q 041458 411 PQEFYKYVIT---SLCRKGKTYQAFQLLYEMTKY--G-FTPDSY--T----------------YSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 411 ~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~--~-~~p~~~--~----------------~~~l~~~~~~~g~~~~a 466 (568)
|...|..++. .....++.+.+...+.++... | +-|+.. . ...++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3444555533 345678999999999998863 2 222211 1 23455667789999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE-----KGQMPNETTYTI 522 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 522 (568)
..+.+.+....+- |...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+-..
T Consensus 82 ~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 82 LRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 9999999976544 888999999999999999999999998864 488898876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.011 Score=41.95 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=29.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEK----GQ-MPN-ETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+++.+...|...|++++|++.+++..+. |- .|+ ..++..+...+...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555554431 10 011 2344455555555556666555555544
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.19 Score=40.86 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=53.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHH
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLS 501 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 501 (568)
+...|++++|..+|.-+...++. +..-|..|..+|-..+++++|...|......+.. |+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 34566777777777665554322 3444556666666677777777777666544332 444455566667777777777
Q ss_pred HHHHHHHHH
Q 041458 502 LEVFQMMIE 510 (568)
Q Consensus 502 ~~~~~~m~~ 510 (568)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777777665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.34 Score=46.46 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHhhCC-CCCC-hhhHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 041458 392 KVQEAFAIIQSLGNKQ-NSSP-QEFYKYVITSLCR---------KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME 460 (568)
Q Consensus 392 ~~~~a~~~~~~~~~~~-~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 460 (568)
..+.|..+|.+..... ..|+ ...|..+..++.. ..+..+|.++.++..+.+ .-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4677788888877221 2222 2334444333322 223446666667776654 23666666777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHH
Q 041458 461 GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE---TTYTILVEGIAHQDELELSA 537 (568)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~ 537 (568)
++++.|..+|++....++. ....|......+.-+|+.++|.+.+++..+. .|.. ......++.|..++ .+.|.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 7788888888888765433 4555666666667788888888888887663 4533 33333444555554 45555
Q ss_pred HHHHH
Q 041458 538 EVLKE 542 (568)
Q Consensus 538 ~~~~~ 542 (568)
+++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 55543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.62 Score=41.72 Aligned_cols=140 Identities=16% Similarity=0.055 Sum_probs=65.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
...|+..+|...|......... +...-..++.+|...|+.+.|..++..+....-.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3445555555555555443211 233444555555556666666665555442211111111222334444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHhhhhcC
Q 041458 503 EVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV--SESAVERLVMQYDFEG 565 (568)
Q Consensus 503 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 565 (568)
.+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+++++.. +...-+.++..+..-|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444331 224444445555555566666665555555444322 5555555555554444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.022 Score=40.44 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CC-hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEE----YDYK-PD-VDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
+++.+...|...|++++|+++|++..+ .|.. |+ ..++..+..+|...|++++|.+.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666665542 2211 11 34566666667777777777777766553
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.78 Score=44.24 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 452 SLIRGLCMEGLIEEALEIFVVMEEYDYK-PDVDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 452 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
.+...+.+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+--
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444445566666666666666532111 123344556666666666666666665543
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.24 Score=38.09 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=24.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
++..|+.+.|++.|.+.+..- +-....||.-..++.-.|+.++|++-+++..
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 344455555555555444331 1133445555555555555555555444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.028 Score=34.52 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLV 558 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 558 (568)
+|..+..+|...|++++|+++++++++..|.++.....+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666677777777777777776666666555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.5 Score=40.86 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=62.8
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 041458 385 AMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIE 464 (568)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 464 (568)
..+...|+...|.++..+. ..|+...|-..+.+++..+++++-.++... +-++.-|...+.+|.+.|...
T Consensus 185 ~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 3334445444444443333 234667777777778877777766665432 113466777778888888887
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 465 EALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 465 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
+|..+...+ .+..-+..|.+.|++.+|.+.--+
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777651 113456667777777777765444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.7 Score=41.15 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=26.6
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 480 PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 480 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.+...+..++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35556677888889999999999999999875
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.2 Score=47.89 Aligned_cols=63 Identities=14% Similarity=0.034 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS----YTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|++++|++.+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355666666677777777777777766654 3442 24666666677777777777777666653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.84 E-value=3.4 Score=44.48 Aligned_cols=109 Identities=21% Similarity=0.275 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh--hHHHHHHHH
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV--TYNILIGSL 318 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 318 (568)
|.+....+.+.+.+++|.-.|+..-+ ...-+.+|...|+|.+|+.+..++.... |.. +-..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHH
Confidence 34444445567777888777766432 2345667778888888888887775321 222 225677777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 319 AYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQM 369 (568)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 369 (568)
...++.-+|-++..+.... ....+..|++...+++|..+....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 8888888888877776642 233455666667777777665443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.2 Score=38.65 Aligned_cols=205 Identities=13% Similarity=0.072 Sum_probs=117.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLC 179 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 179 (568)
.|..-..+|...+++++|...+.+..+. ...+...|.+ ...++.|.-+.+++.+. +--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555566777888899888877777642 1223222322 23345666666666653 223455677778888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---C--CCCCHhhHHHHHHHHHhcCCh
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK---G--GKPNLVSYNVLLTGLCKEGRT 254 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~ll~~~~~~g~~ 254 (568)
.+|.++.|-..+++.-+. ..+.+++.|+++|++.... + .+.-...+...-+.+++...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 888888877777665331 2334455566666554332 1 011223344555666777777
Q ss_pred HHHHHHHHHhhhCC----CCCCh-hHHHHHHHHHHcCCCHHHHHHHHHHhccC---CCCcCHhhHHHHHHHHHhcCChHH
Q 041458 255 EEAIRFFRDLPSKG----FEPNV-VSYNILLRSLCMEGRWEEANELLAEMDGG---DRSPTIVTYNILIGSLAYHGKTDH 326 (568)
Q Consensus 255 ~~A~~~~~~~~~~~----~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 326 (568)
++|-..|.+-.... --++. ..|...|-.+.-..++..|...++.-... .-+.+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 77766654432110 01111 23455555666677888888888874332 2234567777777776 4566666
Q ss_pred HHHHH
Q 041458 327 ALKVL 331 (568)
Q Consensus 327 a~~~~ 331 (568)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.6 Score=39.26 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=87.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN 183 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 183 (568)
-.......|++.+|..+|......... +...-..+..+|...|+++.|..++..+...--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 344567788888888888888876433 4556677788888888888888888887653211112222223444444444
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCChH
Q 041458 184 LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG-GKPNLVSYNVLLTGLCKEGRTE 255 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~ 255 (568)
..+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.++.+. .--|...-..++..+.-.|.-+
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 44444444444331 2255555566667777777777777666555441 1124444555555555544333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.49 Score=45.37 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDA----SSYTYLVNCLCKKGNVGYAMQLVEKMEDY 162 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 162 (568)
+.+...|+.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|.+.|++++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4578889999999999999999999999999875 443 35899999999999999999999999875
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.44 Score=36.65 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=53.8
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCh
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASS---YTYLVNCLCKKGNV 149 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~ 149 (568)
.+..|+++.|++.|.+.+.. .+.....||.-..++.-+|+.++|++=+++..+-........ |..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34567777777777766665 233566677777777777777777777776665322212222 22222345566777
Q ss_pred hhHHHHHHHHHhCC
Q 041458 150 GYAMQLVEKMEDYG 163 (568)
Q Consensus 150 ~~a~~~~~~~~~~~ 163 (568)
+.|+.-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777776666655
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.54 E-value=1 Score=36.33 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041458 103 NLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK 145 (568)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 145 (568)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444555555554444432 334444444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.84 Score=35.34 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 277 NILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF 339 (568)
Q Consensus 277 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (568)
..-+......|+-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334444555555555555555554422 44455555555555555555555555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.52 Score=41.74 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHH
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK-GQMP-NETTYTILVE 525 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~ 525 (568)
|+.-+. +.+.|++.+|...|....+..+. -....+-.|..++...|++++|..+|..+.+. +-.| -+..+.-|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444333 34566677777777777654221 12334556777778888888888888777763 1122 2355666667
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCHHHHHH
Q 041458 526 GIAHQDELELSAEVLKELQLRQVVSESAVER 556 (568)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 556 (568)
...+.|+.++|...++++.+..|..+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7777888888888888888888776655443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.1 Score=44.69 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCc------HHHHHHHHHHHHh----cCChH
Q 041458 116 KAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTN------TVTYNSLVRGLCM----LGNLN 185 (568)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~----~g~~~ 185 (568)
-..-+|.-+..- . +.....++....-.|+-+.+++.+.+..+.+--.. .-.|+..+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl--L--Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL--L--PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh--C--CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 345566666553 1 22355666666677777788777777655321111 1234444444443 34678
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHH-HHHHHcCCHHHHHHHHHHHHHcCC---CCCHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 186 QSLQFLDRLIQKGLVPNAFTYSFLL-EAAYKERGVHAAMKLLDDIIAKGG---KPNLVSYNVLLTGLCKEGRTEEAIRFF 261 (568)
Q Consensus 186 ~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~ 261 (568)
.|.++++.+.+. -|+...|...- +.+...|++++|.+.|++...... +.....+--+.-.+.-.+++++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 888888888876 66766665443 445567889999988887653211 112334444556677888999999999
Q ss_pred HHhhhCCCCCChhHHHHHH-HHHHcCCCH-------HHHHHHHHHhcc
Q 041458 262 RDLPSKGFEPNVVSYNILL-RSLCMEGRW-------EEANELLAEMDG 301 (568)
Q Consensus 262 ~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~a~~~~~~~~~ 301 (568)
..+.+..-. +...|.-+. .++...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 988875322 333444333 334556766 888888887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.22 Score=46.52 Aligned_cols=129 Identities=16% Similarity=0.065 Sum_probs=84.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC-----CCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKY-----GFTP---------DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVD 483 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~-----~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 483 (568)
-...|.+.|++..|..-|++..+. +..+ -..+++.|.-+|.+.+++.+|++.-+...+.+.. |..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chh
Confidence 366788899999999998886542 1111 1223566666777788888888888777766543 666
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC-hhHHHHHHHHHHHcCCC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH-QDE-LELSAEVLKELQLRQVV 549 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~-~~~a~~~~~~~~~~~~~ 549 (568)
..---..+|...|+++.|+..|+++++ +.|+......=+..|.+ ... .+...++|..|+..-..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 666667778888888888888888887 46655554444444433 222 33446777777765443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.35 E-value=3.4 Score=41.23 Aligned_cols=116 Identities=17% Similarity=0.106 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHH--HHHHHhCCCHHHHHHHHHHHhhCCC---CCChhhHHHHHHHHHhcCChhH
Q 041458 356 EGKVDLVVKCLDQMFHRRCKPNEGTYNG--LAMLCGVGKVQEAFAIIQSLGNKQN---SSPQEFYKYVITSLCRKGKTYQ 430 (568)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 430 (568)
..+.+.|.+++..+.+.- |+...+.. ...+...|++++|.+.|+....... ......+--+...+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 345677888888887763 44444444 6667778888888888886543211 1122334456667778899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCCH-------HHHHHHHHHHH
Q 041458 431 AFQLLYEMTKYGFTPDSYTYSSLIRGL-CMEGLI-------EEALEIFVVME 474 (568)
Q Consensus 431 A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~m~ 474 (568)
|.+.|..+.+.. .-+..+|..+..+| ...|+. ++|.++|.+..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999988753 11233333333332 345666 78888887765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.33 E-value=3 Score=40.49 Aligned_cols=56 Identities=30% Similarity=0.322 Sum_probs=26.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCC-CChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 244 LLTGLCKEGRTEEAIRFFRDLPSKGFE-PNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 244 ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
+..++-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333444555555555555555433111 12223444555555555555555555554
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.94 Score=44.43 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=78.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAI 258 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 258 (568)
.-.++++++.++.+.-.-.. ..+....+.++..+.+.|-.+.|+.+-..-.. -.....+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHH
Confidence 34566666555543110000 11233456666666666666666665433211 123344567777776
Q ss_pred HHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 259 RFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGR 338 (568)
Q Consensus 259 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (568)
++.++.. +...|..|.....+.|+++-|++.|.+... +..|+-.|.-.|+.+.-.++.+.....|
T Consensus 339 ~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 6654433 555677777777777777777777766542 4555556666666666666655555443
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 339 FRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 339 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
-++....++.-.|+.++..+++.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 134445555556666666555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.47 Score=46.45 Aligned_cols=157 Identities=19% Similarity=0.258 Sum_probs=79.4
Q ss_pred HHHhcCChhHHHHHHHH--HHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 041458 107 DLCKANKMKKAIKVMEM--MVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNL 184 (568)
Q Consensus 107 ~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 184 (568)
...-.++++.+.+..+. +.. .+ +..-.+.++..+-+.|..+.|+++...-. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 33455677766665541 111 11 23446666666677777777766543221 224445566777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 185 NQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 185 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
+.|.++.++. .+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7666655432 2556666666666677777666666665432 344555556666666666665555
Q ss_pred hhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 265 PSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 265 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
...| -+|....++.-.|+.++..+++.+.
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4432 2444444555556666666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.31 E-value=2.8 Score=39.96 Aligned_cols=436 Identities=11% Similarity=0.010 Sum_probs=228.4
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+...+..++..+.+++|... .+--..+|..-+++-...+++.....+|.+..... .+...|...+..-.+....-
T Consensus 50 q~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~YIRr~n~~~ 126 (660)
T COG5107 50 QYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEYIRRVNNLI 126 (660)
T ss_pred HHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHHHHhhCccc
Confidence 4456688999999999999664 34345678888888888899999999999988764 46777888776555543221
Q ss_pred ------hHHHHHHHHHh-CCCCC-cHHHHHHHHHHHH---hcC------ChHHHHHHHHHHHHCCCCCCHhhHHH-----
Q 041458 151 ------YAMQLVEKMED-YGYPT-NTVTYNSLVRGLC---MLG------NLNQSLQFLDRLIQKGLVPNAFTYSF----- 208 (568)
Q Consensus 151 ------~a~~~~~~~~~-~~~~~-~~~~~~~li~~~~---~~g------~~~~a~~~~~~m~~~~~~~~~~~~~~----- 208 (568)
...+.|+-... .++.| ....|+..+..+- ..| +.+...+.+.+|+...+..-...|+-
T Consensus 127 tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE 206 (660)
T COG5107 127 TGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFE 206 (660)
T ss_pred ccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHH
Confidence 12233443332 33443 3334555544332 122 34566667777765422211112211
Q ss_pred -HHHHHH-H------cCCHHHHHHHHHHHHH--cCCC----CCHhhHHH-----------HHHHHHhcC-----C-h-HH
Q 041458 209 -LLEAAY-K------ERGVHAAMKLLDDIIA--KGGK----PNLVSYNV-----------LLTGLCKEG-----R-T-EE 256 (568)
Q Consensus 209 -li~~~~-~------~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~-----------ll~~~~~~g-----~-~-~~ 256 (568)
=+.-.. + ..-+-.|...++++.. .|.+ .+..++|. .|..-...| + . ..
T Consensus 207 ~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qR 286 (660)
T COG5107 207 LELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQR 286 (660)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHH
Confidence 111110 0 1113455666666543 2321 12222222 111111110 0 0 00
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
..-++++.... +.-....|----..+...++-+.|....+.-... .|. .-..+-..|.-..+.+.....|+....
T Consensus 287 i~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 287 IHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 11111111111 0111222222223344556666676666554322 232 112233344444555555555554432
Q ss_pred CCCCCCcccHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCC-CCCC
Q 041458 337 GRFRPSAASYNPIIARLCS---EGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQ-NSSP 411 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 411 (568)
. ...--.++.+-+. .|+++.-.+++-+-. ..-...|.. +....+...++.|..+|-++.+.+ ..++
T Consensus 362 ~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 362 D-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred H-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 1 0000001111000 122221111111111 111222222 555556677888999999998887 4566
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNAL 488 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l 488 (568)
+..+++++..++. |+..-|..+|+--... -||...| ...+..+...++-+.|..+|+...+. +..+ ...|..+
T Consensus 433 vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~km 508 (660)
T COG5107 433 VYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKM 508 (660)
T ss_pred eeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHH
Confidence 7788888887664 7888899999865543 3444443 45666777889999999999865532 1112 5688999
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
|+--..-|+...+..+-++|.+. .|-..+.....+-|.-
T Consensus 509 i~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 509 IEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 99888999999999888888873 5666555555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.97 Score=42.38 Aligned_cols=97 Identities=10% Similarity=-0.001 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
.+++.+..++.+.+++.+|++.-++.+..+ ++|....-.-..+|...|+++.|+..|+++.+..+. |-..-+.++..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 346667788889999999999999888764 446777777788999999999999999999986443 444555555554
Q ss_pred HccCCh-HHHHHHHHHHHHC
Q 041458 493 CKSRRT-DLSLEVFQMMIEK 511 (568)
Q Consensus 493 ~~~g~~-~~a~~~~~~m~~~ 511 (568)
-+..+. +...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 444443 3447778888753
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.24 E-value=3 Score=39.88 Aligned_cols=394 Identities=15% Similarity=0.139 Sum_probs=209.9
Q ss_pred hHHHHHHHH--HhcCChhHHHHHHHHHHHC--CCC------------CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 041458 100 QATNLLYDL--CKANKMKKAIKVMEMMVSS--GII------------PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 100 ~~~~l~~~~--~~~~~~~~A~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 163 (568)
.|-.+..++ -+.+.+..|++.+.....+ +.. +|...-+..++++...|++.+++.+++++...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344454443 4788999999998877665 221 122233556778899999999999998887543
Q ss_pred ----CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 041458 164 ----YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK---GLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP 236 (568)
Q Consensus 164 ----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (568)
...+..+|+.++-.+.+. .|-++++. .+-|| .|. ++-.|.+.= ..++...-..+-|
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd--yYe-milfY~kki------~~~d~~~Y~k~~p 221 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD--YYE-MILFYLKKI------HAFDQRPYEKFIP 221 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH--HHH-HHHHHHHHH------HHHhhchHHhhCc
Confidence 347899999877777653 34444321 22222 232 333332211 1111111111233
Q ss_pred CHhhHHHHHHHHHhc--CChHHHHHHHHHhhhCCCCCChhH-HHHHHHHHHcCCCHHHHHHHHHHhccCCCC----cCHh
Q 041458 237 NLVSYNVLLTGLCKE--GRTEEAIRFFRDLPSKGFEPNVVS-YNILLRSLCMEGRWEEANELLAEMDGGDRS----PTIV 309 (568)
Q Consensus 237 ~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~ 309 (568)
.......++....-. .+..--.+++......-+.|+... ...|...+.+ +.+++..+-+.+....+. .-..
T Consensus 222 eeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~ 299 (549)
T PF07079_consen 222 EEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID 299 (549)
T ss_pred HHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333211 122222333333333334444322 2233333333 455555555544332211 1245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH-------HHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCh
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYN-------PIIARLCS----EGKVDLVVKCLDQMFHRRCKPNE 378 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 378 (568)
++..++....+.++...|.+.+.-+...+ |+...-. .+.+..+. ..+...-+.+++......+....
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ 377 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ 377 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 67778888888888888888887766542 3332211 12222221 11223334455555443322111
Q ss_pred hhH---HHHHHHHhCCC-HHHHHHHHHHHhhCCCCCChhhHHHHH----HHHHh---cCChhHHHHHHHHHHHCCCCCCh
Q 041458 379 GTY---NGLAMLCGVGK-VQEAFAIIQSLGNKQNSSPQEFYKYVI----TSLCR---KGKTYQAFQLLYEMTKYGFTPDS 447 (568)
Q Consensus 379 ~~~---~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 447 (568)
..- .....+-+.|. -+.|+.+++.+.+-... |..+-|.+. .+|.+ ...+.+-+.+-+-..+.|+.|-.
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 111 11334445555 77888888877664322 333333221 22221 22333444444445567777643
Q ss_pred h----hHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 041458 448 Y----TYSSLIRG--LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYT 521 (568)
Q Consensus 448 ~----~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 521 (568)
+ .-|.|.++ +...|++.++.-+-.-..+ +.|++.+|..+.-++....++++|..+++.+ +|+..+++
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d 529 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD 529 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence 3 33444444 4568999998877666665 5789999999999999999999999999875 67777665
Q ss_pred H
Q 041458 522 I 522 (568)
Q Consensus 522 ~ 522 (568)
.
T Consensus 530 s 530 (549)
T PF07079_consen 530 S 530 (549)
T ss_pred H
Confidence 4
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.23 E-value=3.6 Score=40.83 Aligned_cols=389 Identities=11% Similarity=0.039 Sum_probs=216.7
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
+...|+.+|.---...+++.+..+++.+... .|.----|......=.+.|..+.+.++|++-++. ++.....|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 4556666665444444556777778777753 3323335666666777889999999999998864 5667777777666
Q ss_pred HHH-HcCCHHHHHHHHHHHHHc-CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHH---c
Q 041458 212 AAY-KERGVHAAMKLLDDIIAK-GGK-PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLC---M 285 (568)
Q Consensus 212 ~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~ 285 (568)
.+. ..|+.+...+.|+..+.. |.. -+...|...|..-..++++.....+++++.+. ....++..-.-|. +
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence 554 468888888999888775 221 24556888888888899999999999998875 2223333222221 1
Q ss_pred C------CCHHHHHHHHHHhccC----CCCcCHhhHH------------------HH-------HHHHHhcCChHHHHHH
Q 041458 286 E------GRWEEANELLAEMDGG----DRSPTIVTYN------------------IL-------IGSLAYHGKTDHALKV 330 (568)
Q Consensus 286 ~------g~~~~a~~~~~~~~~~----~~~~~~~~~~------------------~l-------~~~~~~~g~~~~a~~~ 330 (568)
. -..+++.++-...... ...+....+. .+ -.++.......+....
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 1233333222222110 0000011111 11 1122222223333333
Q ss_pred HHHHHHC---CCC----CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHH
Q 041458 331 LDEMVKG---RFR----PSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSL 403 (568)
Q Consensus 331 ~~~~~~~---~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 403 (568)
|+.-.+. .++ ++..+|...+.--...|+.+.+.-++++..----.-+......+......|+.+-|..++...
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 4333332 112 234567777777777888888887777765432233444444444444557777777777666
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCC
Q 041458 404 GNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSY-TYSSLIRGLCMEGLIEEAL---EIFVVMEEYDYK 479 (568)
Q Consensus 404 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~---~~~~~m~~~~~~ 479 (568)
.+-..+....+--.-....-..|+...|..+++...+. . |+.+ .-..-+....+.|..+.+. +++....+ |-.
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~ 434 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE 434 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc
Confidence 55443322222111112223456888888888887765 2 4432 2223334455667777666 33332222 111
Q ss_pred CChhhHHHHHHH-----HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041458 480 PDVDNFNALLLG-----LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD 531 (568)
Q Consensus 480 p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 531 (568)
+......+.-- +.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 435 -~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 435 -NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 33333333322 23356778888888888875 5667777777777766655
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.8 Score=39.74 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=68.4
Q ss_pred CCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH---HccCChHHHHHHHHHHHHCCCCCCHH
Q 041458 443 FTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL---CKSRRTDLSLEVFQMMIEKGQMPNET 518 (568)
Q Consensus 443 ~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~ 518 (568)
..|+..|+ +.++.-+.+.|-+.+|...+..+... ++|+...|..+|..- ..+| ..-+.++++.|... ...|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChH
Confidence 35566555 56677777888888888888888765 455777777777532 2223 67778888888764 236778
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
.|.-.+.-=..+|..+.+-.++.++.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHH
Confidence 88877777777888877776665544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.93 E-value=6.7 Score=42.38 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=23.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYGFTPDSY--TYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
+.+|..+|++.+|+.+..++.. .-|.. +-..|+.-+...++.-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3444455555555555544431 11111 11344444555555555555544433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.21 Score=43.97 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHH
Q 041458 95 KPDVVQATNLLYDLCK-----ANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTV 169 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 169 (568)
+.|-.+|...+..+.. .+.++--...+..|.+-|+..|..+|+.|++.+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 4456666666655532 23444444455555555665566666655554433211 1111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERG 218 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 218 (568)
.+....-.|- .+-+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1223455666666666666666666666666655543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.3 Score=36.99 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCChHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEY---DYKPDVDNFNALLLGLCKSRRTDLSLEVF 505 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 505 (568)
.|.+.|-.+....++..|.+.++.-.+. .-.-+..+...|+.+| ..|+.+++.+++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3555566666677777777777763321 1122555666677665 456666665554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.23 Score=43.79 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------------CHHHHHHH
Q 041458 411 PQEFYKYVITSLCR-----KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG----------------LIEEALEI 469 (568)
Q Consensus 411 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~a~~~ 469 (568)
|..+|-..+..+.. .+.++--...++.|.+.|+.-|..+|+.|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44455555555543 2455555566777788888888888888887765432 22346778
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSRRT 498 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 498 (568)
+++|..+|+.||.++-..+++++++.+..
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 88888888888888888888888777653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.58 Score=41.47 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-hhhHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP--DSYTYSSLIRGLCMEGLIEEALEIFVVMEE-YDYKPD-VDNFNALL 489 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~-~~~~~~li 489 (568)
.|+.-+. +.+.|++.+|...|...++....- ....+--|..++...|++++|..+|..+.+ .+-.|. ++.+-.+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554443 345566777777777777642110 122344567788888888888888888774 322222 36677778
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 041458 490 LGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888888875
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.5 Score=33.98 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 512 (568)
-+......|.-++-.+++..+.+ .-.+++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444444444444444432 113344444444455555555555555555544444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.5 Score=37.89 Aligned_cols=19 Identities=5% Similarity=-0.118 Sum_probs=12.2
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 041458 526 GIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~ 544 (568)
.+.+.++++.|.++++-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3455677777777776443
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.66 E-value=1 Score=35.77 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041458 379 GTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP--QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRG 456 (568)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 456 (568)
..|.......+.|++++|.+.|+.+..+.+... ...--.++.+|.+.+++++|...+++.++....--.+-|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 334445555566667777777766666544322 234445667777777777777777777776433333455555555
Q ss_pred HHh
Q 041458 457 LCM 459 (568)
Q Consensus 457 ~~~ 459 (568)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.61 E-value=3.7 Score=37.90 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCC----hhHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcC--
Q 041458 393 VQEAFAIIQSLGNKQNS---SPQEFYKYVITSLCRKGK----TYQAFQLLYEMTKYGFTPDSY--TYSSLIRGLCMEG-- 461 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g-- 461 (568)
...|..+|+.|++.++. ++...+..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 44566666666665542 233444444433 2222 245667777777777665432 2223332222211
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 462 LIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 462 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
.+.++.++++.+.+.|+++....|..+.-..
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 1457888888888888888887776655433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.8 Score=34.37 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=58.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFT--PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 497 (568)
....+.|++++|.+.|+.+...-.. -....-..|+.+|.+.+++++|...+++.++..+.--..-|...+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3344566777777777666654111 01233455666666777777777777666654333222334444444332221
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
.+ ..++.+.. ..-| .+....|..-|+++++..|.+.-+.
T Consensus 98 ~~---~~~~~~~~--~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 98 DE---GSLQSFFR--SDRD-------------PTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred hh---hHHhhhcc--cccC-------------cHHHHHHHHHHHHHHHHCcCChhHH
Confidence 11 11112111 1111 1224577777888888777765443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.1 Score=40.69 Aligned_cols=154 Identities=11% Similarity=0.017 Sum_probs=95.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCC
Q 041458 108 LCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNT----VTYNSLVRGLCMLGN 183 (568)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~ 183 (568)
...+|++.+|-..++++.+.- +.|..++...=.+|...|+.+.-...++++... ..++. .+-..+.-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345677777777777777653 346667777777788888887777777777643 12333 222334445557788
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCChHHHHHH
Q 041458 184 LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP---NLVSYNVLLTGLCKEGRTEEAIRF 260 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~ 260 (568)
+++|.+.-++..+.+ +.|...-.++...+--.+++.++.+...+-...--.. -..-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888777664 3366666666677777778887777665543221000 111222233355666888888888
Q ss_pred HHHh
Q 041458 261 FRDL 264 (568)
Q Consensus 261 ~~~~ 264 (568)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 8753
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.4 Score=36.43 Aligned_cols=189 Identities=21% Similarity=0.110 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHhccCCCC-cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCCHHHHHH
Q 041458 287 GRWEEANELLAEMDGGDRS-PTIVTYNILIGSLAYHGKTDHALKVLDEMVKG-RFRPSAASYNPIIARLCSEGKVDLVVK 364 (568)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 364 (568)
+....+...+......... .....+......+...+....+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555554443211 12455566666666777777776666665542 112233444445555556666666666
Q ss_pred HHHHHhhCCCCCChhhHHHHH-HHHhCCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 365 CLDQMFHRRCKPNEGTYNGLA-MLCGVGKVQEAFAIIQSLGNKQN--SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY 441 (568)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 441 (568)
.+.........+......... .+...|+.+.|...+........ ......+......+...++.+++...+.+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666665543333221211122 44555555555555555533111 011122222222233444555555555544443
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 442 GFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 442 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
........+..+...+...++++++...+.....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 1110133344444444444445555555544443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.6 Score=39.68 Aligned_cols=153 Identities=15% Similarity=0.037 Sum_probs=81.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhC-CCCCChhhHHH--HHHHHHhcCCh
Q 041458 353 LCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNK-QNSSPQEFYKY--VITSLCRKGKT 428 (568)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~--li~~~~~~g~~ 428 (568)
....|++.+|-..++++++..+ .|...+.. -..+.-.|+.+.-...++++... +...+..+|-. +.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3445666677667777766532 23333333 34555567766667777766554 22222222222 22334466777
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCChHHHHHHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY---DYKPDVDNFNALLLGLCKSRRTDLSLEVF 505 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 505 (568)
++|++.-++..+.+ +.|.-.-.++...+--.|+..++.++..+-... +.-.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777666543 234445556666666677777777766554321 11111222333333445556777777777
Q ss_pred HH
Q 041458 506 QM 507 (568)
Q Consensus 506 ~~ 507 (568)
++
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 54
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=2.7 Score=34.48 Aligned_cols=120 Identities=16% Similarity=0.213 Sum_probs=53.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh----hHHHHHHHHhCCC
Q 041458 319 AYHGKTDHALKVLDEMVKGRFRPSAASYN--PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEG----TYNGLAMLCGVGK 392 (568)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 392 (568)
.+.++.++|+.-|.++.+.|... ..+.. .+.....+.|+...|...|+++-.....|-.. .......+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 44556666666666666554331 11111 11223445566666666666665443333222 1122333444455
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 393 VQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMT 439 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 439 (568)
+++.....+.+...+.+.....-..|.-+-.+.|++.+|.+.|..+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 55444444444333322222223333334444455555555554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.17 E-value=8.2 Score=40.07 Aligned_cols=177 Identities=20% Similarity=0.205 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH----HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYT----YLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
...-+..+++...++.|+.+-+. .+. |..+.. .....+.+.|++++|...+-+-... +.|. .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 34556667777777777766443 332 333333 3334455788999998887665533 2222 3456
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
-|....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 666666777777788888888766 66666788999999999888766665443 2211 1124456677777777888
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 300 (568)
|..+-..... +......+ +-..+++++|.+.+..+.
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 8777655432 23333333 445688999999888764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.22 Score=30.48 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=17.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
+|..+...|...|++++|+++++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666666654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.6 Score=33.90 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=19.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 041458 138 YLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCML 181 (568)
Q Consensus 138 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (568)
.++..+...+........++.+...+ +.+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444444555555555444443 23444444555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.9 Score=38.93 Aligned_cols=162 Identities=9% Similarity=0.023 Sum_probs=103.6
Q ss_pred ccH--HHHHHHHHhc-----CCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHh-----------CCCHHHHHHHHHHHh
Q 041458 344 ASY--NPIIARLCSE-----GKVDLVVKCLDQMFHR-RCKPNEGTYNGLAMLCG-----------VGKVQEAFAIIQSLG 404 (568)
Q Consensus 344 ~~~--~~li~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~ 404 (568)
..| ..++.+.... ...+.|..+|.+.... ...|+-..-......|. .....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555554432 2346788889988832 33444333333222221 234566677777777
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh
Q 041458 405 NKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK-PDV 482 (568)
Q Consensus 405 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~ 482 (568)
+.+.. |......+..+....++.+.|...|++.... .|| ..+|......+..+|+.++|.+.+++..+..+. .-.
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 76555 6677777777778888899999999998875 555 556777777788899999999999997765322 122
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
......++.|+.. ..++|++++-+-.
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 3333445566665 4677877765433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.80 E-value=9.8 Score=39.67 Aligned_cols=190 Identities=12% Similarity=0.035 Sum_probs=93.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCC-CC-------hh-hHHHHHHHHhCCCHHHHHHHHH--------HHhhCCCCCChhhHHH
Q 041458 355 SEGKVDLVVKCLDQMFHRRCK-PN-------EG-TYNGLAMLCGVGKVQEAFAIIQ--------SLGNKQNSSPQEFYKY 417 (568)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~-~~-------~~-~~~~~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 417 (568)
-.+++..+.+.++.+...... |+ .. .|-....+-..|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 468888899998888764221 11 11 1111334445799999999997 4444544444433322
Q ss_pred H----HHHHHhcCChhH--HHHHHHHHHHC-CCCC--ChhhHHHH-HHHHHhcC--CHHHHHHHHHHHHh-C--CCCCC-
Q 041458 418 V----ITSLCRKGKTYQ--AFQLLYEMTKY-GFTP--DSYTYSSL-IRGLCMEG--LIEEALEIFVVMEE-Y--DYKPD- 481 (568)
Q Consensus 418 l----i~~~~~~g~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-~~~~~~~g--~~~~a~~~~~~m~~-~--~~~p~- 481 (568)
+ |.-+.......+ +.++++.+... .-.| +..++..+ +.++...- ...++...+....+ . ....+
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 1 111222222333 66777665432 1122 22233333 33333221 12344444433321 1 11111
Q ss_pred --hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-C--CHHHHHH-----HHHHHHhcCChhHHHHHHHHHHH
Q 041458 482 --VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQM-P--NETTYTI-----LVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 482 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p--~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
..+++.+...+. .|+..+..+........-.+ | ....|.. +...+...|+.++|.....+...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 122333333333 67877766665544331111 2 3455633 33457778999999988877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.78 E-value=3.3 Score=34.17 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=15.3
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChH
Q 041458 157 EKMEDYGYPTNTVTYNSLVRGLCMLGNLN 185 (568)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (568)
..+.+.+++|+...+..++..+.+.|++.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444455555555555555555555543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=4 Score=33.50 Aligned_cols=61 Identities=7% Similarity=0.003 Sum_probs=29.0
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
+...|.+++.....+-+...+-+--...-..|.-+-.+.|++..|.++|+.+......|..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 3445555555555544443332222333334444555556666666666555553333333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.25 E-value=11 Score=38.75 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=78.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 041458 175 VRGLCMLGNLNQSLQFLDRLIQKGLVP---NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251 (568)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (568)
++-+.+.+.+++|+++.+.... ..| -...+...|..+.-.|++++|-...-.|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4455666677777766655432 233 2345566677777777777777777777655 555566555555555
Q ss_pred CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccC---------CC-------CcCHhhHHHHH
Q 041458 252 GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGG---------DR-------SPTIVTYNILI 315 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~-------~~~~~~~~~l~ 315 (568)
++......+ +.......+...|..++..+.. .+...-.++..+.... .. ..+...-..|+
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 554433222 2222222344556666655554 2222222222221100 00 11122233467
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 041458 316 GSLAYHGKTDHALKVLDEMV 335 (568)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~ 335 (568)
..|...+++.+|+.++-...
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77777777777777765554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=5.6 Score=34.97 Aligned_cols=189 Identities=20% Similarity=0.160 Sum_probs=92.6
Q ss_pred CChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChHHHHH
Q 041458 112 NKMKKAIKVMEMMVSSGIIP-DASSYTYLVNCLCKKGNVGYAMQLVEKMEDY-GYPTNTVTYNSLVRGLCMLGNLNQSLQ 189 (568)
Q Consensus 112 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (568)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555555442211 2345555666666667777776666665531 123344555556666666666667777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 190 FLDRLIQKGLVPNAFTYSFLLE-AAYKERGVHAAMKLLDDIIAKGG--KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 766666543222 111222222 45566666666666666543211 01122222223334445555555555555544
Q ss_pred CCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 041458 267 KGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301 (568)
Q Consensus 267 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 301 (568)
.........+..+...+...++++.+...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 31111233444444455555555555555555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.13 E-value=1.2 Score=40.12 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE-----KGQMPNETTYTIL 523 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 523 (568)
++..++..+...|+++.+.+.++++....+- +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4455666666666666666666666655433 666666677777777776666666666554 3666666666555
Q ss_pred HHH
Q 041458 524 VEG 526 (568)
Q Consensus 524 l~~ 526 (568)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.09 E-value=5.4 Score=36.85 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--c----CChhHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCCh
Q 041458 79 LNDAFLQLERMVSKGHKPDVVQATNLLYDLCK--A----NKMKKAIKVMEMMVSSGII---PDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 79 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 149 (568)
+.+.+.+++.|.+.|++.+..++-.-...... . ....+|..+|+.|++..+. ++...+..++.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556666777777777666555442222211 1 2345577777777765421 333444444433 22222
Q ss_pred ----hhHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhc-CC--hHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041458 150 ----GYAMQLVEKMEDYGYPTNTV-TYNSLVRGLCML-GN--LNQSLQFLDRLIQKGLVPNAFTYSFLL 210 (568)
Q Consensus 150 ----~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~a~~~~~~m~~~~~~~~~~~~~~li 210 (568)
+.+.+.|+.+.+.|+..+.. -+.+-+-++... .+ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34555666666655544322 222222222211 11 235566666666666665555554443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.09 E-value=7.1 Score=35.91 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=25.3
Q ss_pred ccCChHHHHHHHHHHHhCC--CCCCHH------hHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 041458 75 RDHKLNDAFLQLERMVSKG--HKPDVV------QATNLLYDLCKAN-KMKKAIKVMEMMV 125 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~A~~~~~~~~ 125 (568)
+.|+++.|...+.+..... ..|+.. .|+.-. .....+ +++.|..++++..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~ 63 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAY 63 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHH
Confidence 5677777877777664432 122211 122222 223344 6666666665543
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.06 E-value=4.2 Score=37.66 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=54.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChh-hH--
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGFT-----PDSYTYSSLIRGLCMEGLIEEALEIFVVME----EYDYKPDVD-NF-- 485 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~-~~-- 485 (568)
+..++...+.++++++.|+...+.... ....++..|.+.|....|+++|.-+..+.. ..++. |.. -|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 344444445555555555544432100 112345555555555556555554444332 12222 111 11
Q ss_pred ---HHHHHHHHccCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 486 ---NALLLGLCKSRRTDLSLEVFQMMIE----KGQMP-NETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 486 ---~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
..|.-++...|+.-.|.+.-++..+ .|-.+ -......+.+.|...|+.|.|..-+++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223344445555555544444433 22222 1233334555555566655555554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.05 E-value=7.1 Score=40.01 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=54.5
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--ccCChHHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM-EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC--KSRRTDLSLE 503 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~ 503 (568)
+.+.|..++.+.-+.|. |+.......+.-... ..+...|.++|....+.|.. ....+.++..... -..+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 44556666666665542 343333322222222 23456666666666665533 2222222211111 2235566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 504 VFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 504 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
++++..+.| .|...--...+..+.. +.++.+.-.+..+.+.+..
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 666666665 2222222222223333 5555555555555555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.83 E-value=3.4 Score=38.21 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=108.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHH----HHHHhCC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC---Hhh
Q 041458 135 SYTYLVNCLCKKGNVGYAMQLV----EKMEDYG-YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK-GLVPN---AFT 205 (568)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~----~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~---~~~ 205 (568)
++..+..+.++.|.+++++..- +...+.. -..-...|..+.+++-+.-++.+++.+-..-... |..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4455555666666665554321 1111100 0011234455555555555555555554443322 22221 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh----CCCCCCh---
Q 041458 206 YSFLLEAAYKERGVHAAMKLLDDIIAKGG-----KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS----KGFEPNV--- 273 (568)
Q Consensus 206 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~p~~--- 273 (568)
..++-.+....+.++++++.|+....... .....++..|...|.+..++++|.-+..+..+ .++. |.
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHH
Confidence 33455566667778888888877655311 12235677788888888888888766655432 1221 21
Q ss_pred ---hHHHHHHHHHHcCCCHHHHHHHHHHhcc----CCCCc-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 274 ---VSYNILLRSLCMEGRWEEANELLAEMDG----GDRSP-TIVTYNILIGSLAYHGKTDHALKVLDEMV 335 (568)
Q Consensus 274 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (568)
.....|.-++...|...+|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-|++..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1123345567777888777777776532 23111 23344567788888899998888777654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.83 E-value=14 Score=38.58 Aligned_cols=429 Identities=15% Similarity=0.101 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHh-CCCCC--CHHhHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHh-----hHHHHHHHHHhcCChh
Q 041458 80 NDAFLQLERMVS-KGHKP--DVVQATNLLYDLC-KANKMKKAIKVMEMMVSSGIIPDAS-----SYTYLVNCLCKKGNVG 150 (568)
Q Consensus 80 ~~A~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~ 150 (568)
.-|+..++.+.+ ..++| +..++..+...+. ...+++.|...+++.....-.++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 346667776663 22333 2344555666665 6789999999998775432222211 2234456666666555
Q ss_pred hHHHHHHHHHhC----CCCCcHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHH--HcCCHH
Q 041458 151 YAMQLVEKMEDY----GYPTNTVTYNSL-VRGLCMLGNLNQSLQFLDRLIQKG---LVPNAFTYSFLLEAAY--KERGVH 220 (568)
Q Consensus 151 ~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~~~~~ 220 (568)
|.+..++..+. +..+-...|.-+ +..+...++...|.+.++.+...- ..|-..++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888776543 122223333333 333334478999999998876532 2334444555555544 345566
Q ss_pred HHHHHHHHHHHcCC---------CCCHhhHHHHHHHH--HhcCChHHHHHHHHHhhh-------CC----------C--C
Q 041458 221 AAMKLLDDIIAKGG---------KPNLVSYNVLLTGL--CKEGRTEEAIRFFRDLPS-------KG----------F--E 270 (568)
Q Consensus 221 ~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~-------~~----------~--~ 270 (568)
.+.+..+++..... .|-..+|..+++.+ ...|+++.+...++++.+ .. + .
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 67777776643211 23456666676655 456776666666554422 10 0 0
Q ss_pred -----------CChhHH---------HHHHHH--HHcCCCHHHHHHHH-------HHhc-cCCCCcC--------HhhHH
Q 041458 271 -----------PNVVSY---------NILLRS--LCMEGRWEEANELL-------AEMD-GGDRSPT--------IVTYN 312 (568)
Q Consensus 271 -----------p~~~~~---------~~l~~~--~~~~g~~~~a~~~~-------~~~~-~~~~~~~--------~~~~~ 312 (568)
+....| .-++.+ ++..+..++|.+.+ ++.. .....+. ...|.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 111111 112222 23334443554444 4444 1111111 12222
Q ss_pred HHHH---------HHHhcCChHHHHHHHHHHHHCCC-CCC-----cccHHHHHHH--HHhcCCHHHHHHHHH--------
Q 041458 313 ILIG---------SLAYHGKTDHALKVLDEMVKGRF-RPS-----AASYNPIIAR--LCSEGKVDLVVKCLD-------- 367 (568)
Q Consensus 313 ~l~~---------~~~~~g~~~~a~~~~~~~~~~~~-~~~-----~~~~~~li~~--~~~~~~~~~a~~~~~-------- 367 (568)
..+. ..+-.+++..|...++.+.+..- .|+ ...+..++.+ +-..|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 2222 22356889899999988875421 111 1222233332 335699999999997
Q ss_pred HHhhCCCCCChhhHHHH---HHHHh--CCCHHH--HHHHHHHHhhC---CCCCChhhHHHHH-HHHHhcCC--hhHHHHH
Q 041458 368 QMFHRRCKPNEGTYNGL---AMLCG--VGKVQE--AFAIIQSLGNK---QNSSPQEFYKYVI-TSLCRKGK--TYQAFQL 434 (568)
Q Consensus 368 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~--a~~~~~~~~~~---~~~~~~~~~~~li-~~~~~~g~--~~~A~~~ 434 (568)
.....+...+...+..+ ..+.. .....+ +..+++.+... .+..+..++..++ .++..... ..++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 44455555555555442 22222 222333 67777766553 2222333444443 33332211 1244444
Q ss_pred HHHHHH-C--CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCChhhHH-----HHHHHHHccCChHH
Q 041458 435 LYEMTK-Y--GFTPD---SYTYSSLIRGLCMEGLIEEALEIFVVMEE---YDYKPDVDNFN-----ALLLGLCKSRRTDL 500 (568)
Q Consensus 435 ~~~~~~-~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~-----~li~~~~~~g~~~~ 500 (568)
+.+..+ . ....+ ..+++.+...+. .|+..+..+....... ...+-....|. .+.+.+-..|+.++
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 433222 1 01111 122333333333 6888876666654332 11122344553 34445778899999
Q ss_pred HHHHHHHHHH
Q 041458 501 SLEVFQMMIE 510 (568)
Q Consensus 501 a~~~~~~m~~ 510 (568)
|.....+...
T Consensus 596 a~~~~~~~~~ 605 (608)
T PF10345_consen 596 AEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHH
Confidence 9998877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.4 Score=39.82 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 136 YTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (568)
+..++..+...|+.+.+...++++... -|-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444444445555555555544443 12344445555555555555555555544443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.58 E-value=2 Score=36.19 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPN--AFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555555555555554322221 223344455555555555555554444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.47 E-value=28 Score=41.18 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc
Q 041458 208 FLLEAAYKERGVHAAMKLLDDIIAKGG--KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM 285 (568)
Q Consensus 208 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 285 (568)
.+..+-.+++.+..|.-.++.-..... .-....|-.+...|...+++|...-+...-.. +... ..-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHHh
Confidence 344455667777777777776311100 11122334444477888888777776653111 2222 233445666
Q ss_pred CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCCHHHHHH
Q 041458 286 EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI-IARLCSEGKVDLVVK 364 (568)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~ 364 (568)
.|++..|...|+.+...+ ++...+++.++......|.++...-..+...... .+....|+.+ +.+--+.+++|....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 788888888888887764 4446667777776667777776666554444321 1122222222 233355666665554
Q ss_pred HH
Q 041458 365 CL 366 (568)
Q Consensus 365 ~~ 366 (568)
.+
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.31 E-value=15 Score=37.88 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=39.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIP---DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLG 182 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (568)
.-+.+.+.+++|+..-+..... .| -...+..+|..+...|++++|-...-.|... +..-|...+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3344555666666555443322 22 2234556666666666666666666666542 5555555555555555
Q ss_pred ChH
Q 041458 183 NLN 185 (568)
Q Consensus 183 ~~~ 185 (568)
+..
T Consensus 438 ~l~ 440 (846)
T KOG2066|consen 438 QLT 440 (846)
T ss_pred ccc
Confidence 443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.4 Score=31.93 Aligned_cols=44 Identities=7% Similarity=0.190 Sum_probs=22.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+.+-++.+...++.|++.+..+.+++|++.+++..|.++++-+.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.10 E-value=11 Score=35.93 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=43.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP---DSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
...+|..++..+.+.|.++.|...+.++...+... .+.....-+......|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777888888888888888888877643211 233344445566677888888888877765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.03 E-value=5.8 Score=32.35 Aligned_cols=53 Identities=21% Similarity=0.099 Sum_probs=32.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
-.+.++.+++..++..+.-. .|..... ..-...+...|++.+|..+|+.+.+.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34567777777777777653 4443322 22233456677777777777776654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.00 E-value=3.3 Score=30.52 Aligned_cols=49 Identities=6% Similarity=0.099 Sum_probs=25.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
..+-++.+...++.|++.+..+.+++|++.+++..|.++++-+..+-..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~ 77 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN 77 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC
Confidence 4444445555555666666666666666666666666666665544443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.81 E-value=6.5 Score=32.49 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=71.4
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 041458 189 QFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG 268 (568)
Q Consensus 189 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 268 (568)
+.++.+.+.++.|+...+..+++.+.+.|.+... ..++..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4455556667777777888888888887775543 33444445455544443332222 2223333333333322
Q ss_pred CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 269 FEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 269 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
=...+..++..+...|++-+|.++.+..... +......++.+..+.++...=..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113555666777777777777777665322 222334455555566655544444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.59 Score=26.32 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
.|..+...+...|++++|++.+++.++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 344555555666666666666666655544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.7 Score=36.54 Aligned_cols=60 Identities=17% Similarity=0.064 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRP--SAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
+..+...|.+.|+.+.|.+.|.++.+....+ -...+-.+|......+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555555544432111 11223334444444455555444444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=3.8 Score=37.14 Aligned_cols=50 Identities=16% Similarity=0.374 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
+++++.++..=++.|+-||..++..+++.+.+.+++.+|.++.-.|+...
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555444444444444333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.54 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+|..|...|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.11 E-value=20 Score=36.80 Aligned_cols=178 Identities=16% Similarity=0.106 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHH-----HHhcCChhhHHHHHHHHHh-------CCCCCcHHHHHHHHHHHHhc
Q 041458 114 MKKAIKVMEMMVSSGIIPDASSYTYLVNC-----LCKKGNVGYAMQLVEKMED-------YGYPTNTVTYNSLVRGLCML 181 (568)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 181 (568)
...|.++++...+.| +...-..+..+ +....+.+.|+..|....+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888777765 33332222222 3355678888888877766 44 333556667777664
Q ss_pred C-----ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----hc
Q 041458 182 G-----NLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK-ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLC----KE 251 (568)
Q Consensus 182 g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 251 (568)
. +.+.|..++...-+.|. |+.......+..... ..+...|.++|...-..|..+ .+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcC
Confidence 3 56678888888777663 344333322222222 245678888888887776432 2222222221 23
Q ss_pred CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC
Q 041458 252 GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGD 303 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 303 (568)
.+.+.|..++.+.-++|....... ...+..+.. +..+.+.-.+..+...+
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 367788888888877762221222 222233333 66666666666555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.57 Score=27.07 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=19.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888754
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.85 Score=25.75 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+|..+...+...|++++|...+++.++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344444445555555555555555544443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.021 Score=46.39 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=25.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 041458 140 VNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLD 192 (568)
Q Consensus 140 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (568)
+..+.+.+.+....+.++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544333345555555555555554455544444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.44 E-value=11 Score=32.46 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=83.8
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNS-SPQEFYKYVITSL 422 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 422 (568)
.+||.+.--+...|+++.|.+.|+...+..+.-+-...|-...+.-.|++.-|.+-|...-+.++. |-...|-.++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH--
Confidence 456666556666777777777777777665555555555544455567777777766666555443 22233443332
Q ss_pred HhcCChhHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CChhhHHHHHHHHHcc
Q 041458 423 CRKGKTYQAFQLLY-EMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK------PDVDNFNALLLGLCKS 495 (568)
Q Consensus 423 ~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~li~~~~~~ 495 (568)
..-++.+|..-+. +... .|..-|...|-.+.- |.+. ...+++++....-. .=.++|--+..-+...
T Consensus 178 -~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 -QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred -hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2335555554433 2222 233344433333321 1111 11223333221000 0135666777778888
Q ss_pred CChHHHHHHHHHHHHC
Q 041458 496 RRTDLSLEVFQMMIEK 511 (568)
Q Consensus 496 g~~~~a~~~~~~m~~~ 511 (568)
|+.++|..+|+-.+..
T Consensus 251 G~~~~A~~LfKLaian 266 (297)
T COG4785 251 GDLDEATALFKLAVAN 266 (297)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8888888888887764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.34 Score=27.58 Aligned_cols=15 Identities=13% Similarity=0.002 Sum_probs=5.4
Q ss_pred hHHHHHHHHHccCCh
Q 041458 484 NFNALLLGLCKSRRT 498 (568)
Q Consensus 484 ~~~~li~~~~~~g~~ 498 (568)
.|+.+...|...|++
T Consensus 15 a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 15 AYNNLANLYLNQGDY 29 (34)
T ss_pred HHHHHHHHHHHCcCH
Confidence 333333333333333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=12 Score=32.16 Aligned_cols=160 Identities=18% Similarity=0.069 Sum_probs=77.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAML 387 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (568)
+.+||-|.--+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|++..|.+-+-+.-+..+...-.+.- +..-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW-LYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLW-LYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHH-HHHH
Confidence 44566666666666777777777776666543322222222222 223566666665555554443221111111 1122
Q ss_pred HhCCCHHHHHHHHH-HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------ChhhHHHHHHHHHh
Q 041458 388 CGVGKVQEAFAIIQ-SLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-------DSYTYSSLIRGLCM 459 (568)
Q Consensus 388 ~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-------~~~~~~~l~~~~~~ 459 (568)
...-++.+|..-+. +.... |..-|...|..|.--.-.+ ..++++++.. -.. =..||-.|..-+..
T Consensus 177 E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE--ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH--HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhc
Confidence 22334444443332 33322 4444554444433211111 1122222221 111 13467778888888
Q ss_pred cCCHHHHHHHHHHHHhC
Q 041458 460 EGLIEEALEIFVVMEEY 476 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~ 476 (568)
.|+.++|..+|+-....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999999887754
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.76 E-value=2.2 Score=38.98 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=30.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
...|.+.|.+++|+..+...+.. .| |.+++..-..+|.+...+..|..--....
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556666666666666655542 33 55566666666666665555544444333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.95 Score=25.53 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=15.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.|..+..+|...|++++|++.++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.94 E-value=11 Score=31.87 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=49.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 041458 421 SLCRKGKTYQAFQLLYEMTKYGFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR 496 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 496 (568)
-+.+.|++++|..-|.+.+..-.... ++.|..-..++.+.+.++.|++--.+..+.+.. .......-..+|-+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 46667777777777777666421111 223444444555666666666666555554322 2222333344566666
Q ss_pred ChHHHHHHHHHHHHC
Q 041458 497 RTDLSLEVFQMMIEK 511 (568)
Q Consensus 497 ~~~~a~~~~~~m~~~ 511 (568)
++++|++-++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 677777777776663
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=3 Score=39.99 Aligned_cols=137 Identities=16% Similarity=0.125 Sum_probs=88.7
Q ss_pred HHHHHhCCCHHHHHH-HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 041458 384 LAMLCGVGKVQEAFA-IIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL 462 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 462 (568)
+......|++..|-+ +|..+......|+.+...+.| +...|+++.+.+.+...... +.....+...++......|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 555556777776654 444555554555555444443 45678888888887765543 33455677788888888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 463 IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
.++|...-+.|....++ +++............|-++++.-.|++....+ +|...-|...++
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~v~~~~ 433 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC-Chhcccceeeec
Confidence 88888888888766666 55555554444556677888888888887653 444444444443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.94 E-value=36 Score=35.20 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHhc---------CC-
Q 041458 81 DAFLQLERMVSKGHKPDVVQA-TNLLYDLCKANKMKKAIKVMEMMV-SSGIIPDASSYTYLVNCLCKK---------GN- 148 (568)
Q Consensus 81 ~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~---------g~- 148 (568)
+.+...+.+.+....|+...- ..+-..|.-.|++++|++.--..- ...+.++...+..++.-|... +.
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~ 120 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNP 120 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 455556666665545544433 334467788899998887654332 223455555566555443321 00
Q ss_pred ------hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH-HHCCCCCCHhhHHHHHHHHHHcCC-HH
Q 041458 149 ------VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRL-IQKGLVPNAFTYSFLLEAAYKERG-VH 220 (568)
Q Consensus 149 ------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~~~-~~ 220 (568)
-+.-..++++|.++.. +..-|..+|.......++ .++++. .+... +....+.++..+....+ .+
T Consensus 121 ~~~~~iD~rL~~iv~rmi~kcl--~d~e~~~aiGia~E~~rl----d~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~e 192 (929)
T KOG2062|consen 121 EQKSPIDQRLRDIVERMIQKCL--DDNEYKQAIGIAFETRRL----DIIEEAILKSDS--VIGNLTYLLELLISLVNNRE 192 (929)
T ss_pred cccCCCCHHHHHHHHHHHHHhh--hhhHHHHHHhHHhhhhhH----HHHHHHhccccc--cchHHHHHHHHHHHHHhhHH
Confidence 1223344444444321 111222233322222222 223331 12211 22233334444433322 33
Q ss_pred HHHHHHHHHHH---cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 041458 221 AAMKLLDDIIA---KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK 267 (568)
Q Consensus 221 ~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 267 (568)
--.++++.+.+ .+..|| |..+..+|.-..+.+.+.++++++.+.
T Consensus 193 fR~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 33344444433 234444 445677888889999999999988874
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.70 E-value=6.3 Score=33.51 Aligned_cols=71 Identities=18% Similarity=0.049 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHH
Q 041458 395 EAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY---GFTPDSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a 466 (568)
+|...|-.+...+...++.....+...|. ..+.+++++++.+..+. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444433333333333333232 34555555555544432 1234445555555555555555544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.46 E-value=22 Score=32.19 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
++.....|..+|.+.+|.++.+..+..+ +.+...+..++..+...|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556666666666666666665543 2355556666666666666555555555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=23 Score=32.52 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
|..+-...+.++++.|+ ..|...+-+..+.+ + .....+.++...|.. +|...++++.+...
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 44455555555555555 23444444444321 1 123445555555553 45555555555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.44 E-value=1 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=16.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHH
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAI 118 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~ 118 (568)
+-|...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 346667777777777777777664
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.31 E-value=4.9 Score=29.28 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
+.-++.+-++.+....+.|++....+-+.+|.+.+++.-|.++|+-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344556666666666666777777777777777777777777776665
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.30 E-value=1.4 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=15.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.|..+...+...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.26 E-value=32 Score=33.88 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=16.9
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 041458 342 SAASYNPIIARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
|....-+++..+..+-.+.-...+..+|+.-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~ 95 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY 95 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 4445555555665555555555555555543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.20 E-value=9.7 Score=37.98 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=48.2
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 041458 144 CKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAM 223 (568)
Q Consensus 144 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 223 (568)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544332 445566666666666666666666554432 333444455555544444
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 224 KLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRD 263 (568)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 263 (568)
.+-....+.|.. |...-+|...|+++++.+++..
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 443333333221 2222244445666666555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.11 E-value=5.1 Score=36.33 Aligned_cols=55 Identities=15% Similarity=-0.028 Sum_probs=35.2
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 386 MLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTK 440 (568)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 440 (568)
.++-.-++++++.++..-.+-|+.||..+++.+++.+.+.+++.+|.++...|..
T Consensus 109 rlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 109 RLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3334445556666666666666667777777777777777777777666665554
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.80 E-value=3.4 Score=40.81 Aligned_cols=132 Identities=8% Similarity=-0.110 Sum_probs=93.8
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 431 AFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 431 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
|-.++..|. ..+.|-....|...--+...|+...|.+.+.......+.-..+....|...+.+.|...+|-.++.+...
T Consensus 592 ~~~~~~~~~-~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 592 GSFLFHAIN-KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHhc-CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 334444443 2233333333333333345789999999888776443333444556677777888888899999988887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhc
Q 041458 511 KGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564 (568)
Q Consensus 511 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (568)
.. ...+.++-.+.+++....+++.|.+.+++..++.+..+...+.|.+.-|..
T Consensus 671 ~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 671 IN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRCMQ 723 (886)
T ss_pred hc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhh
Confidence 54 456677888889999999999999999999999999999988888877754
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.65 E-value=24 Score=31.91 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhh
Q 041458 347 NPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGN 405 (568)
Q Consensus 347 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 405 (568)
......|...|.+.+|.++.++.+...+-........+..+...|+--.+..-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34455677777777777777777665433333333336677777776666666665543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.42 E-value=7.2 Score=28.82 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME-EYDYKPDVDNFNALLL 490 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 490 (568)
+..+-++.+....+.|++.+..+.+.+|.+.+++.-|.++|+.++ +.|.. ...|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455666666666777888888888888888888888888887776 44322 225555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.36 E-value=12 Score=31.92 Aligned_cols=74 Identities=18% Similarity=0.039 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCChHHHH
Q 041458 184 LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK---GGKPNLVSYNVLLTGLCKEGRTEEAI 258 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~A~ 258 (568)
-+.|.+.|-++...+..-++.....+.. |....+.+++..++...++. +..+|+..+.+|++.+.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3667777777776665545444444444 44466778888888777664 23567788888888888888887764
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.8 Score=23.98 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=14.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 523 LVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+..++.+.|++++|.+.++++++..|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34455555666666666666655544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.90 E-value=26 Score=30.64 Aligned_cols=19 Identities=0% Similarity=0.267 Sum_probs=11.9
Q ss_pred HccCChHHHHHHHHHHHHC
Q 041458 493 CKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~ 511 (568)
...+++.+|+++|++....
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666777777766654
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.59 E-value=51 Score=35.44 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHhcCCh--HHHHHHHHHhhhCCCCCChhHH---
Q 041458 205 TYSFLLEAAYKERGVHAAMKLLDDIIAKG---GKPNLVSYNVLLTGLCKEGRT--EEAIRFFRDLPSKGFEPNVVSY--- 276 (568)
Q Consensus 205 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~--- 276 (568)
-|..|+..|...|+.++|+++|.+..... ..--...+...+..+.+.+.. +-.+++-+...+....-....+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46667777777777777777777776532 000111222244444444433 4444444443332111000011
Q ss_pred ---------HHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 277 ---------NILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 277 ---------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
..-+-.|......+-+...++.+....-.++....+.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 01223466777788888888888766545566777777777764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.02 E-value=22 Score=29.10 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHHHhh
Q 041458 356 EGKVDLVVKCLDQMFH 371 (568)
Q Consensus 356 ~~~~~~a~~~~~~~~~ 371 (568)
.++.+++..++.-+.-
T Consensus 23 ~~~~~D~e~lL~ALrv 38 (160)
T PF09613_consen 23 LGDPDDAEALLDALRV 38 (160)
T ss_pred cCChHHHHHHHHHHHH
Confidence 3444444444444433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.64 E-value=11 Score=31.97 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=41.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCH
Q 041458 318 LAYHGKTDHALKVLDEMVKGRFRPSA----ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKV 393 (568)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (568)
+.+.|++++|..-|...+..-..... ..|..-..++.+.+.++.|+.-..+.++.++.-......-...|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44555555555555555543211111 11222223455556666666555555555433333333334445555555
Q ss_pred HHHHHHHHHHhhC
Q 041458 394 QEAFAIIQSLGNK 406 (568)
Q Consensus 394 ~~a~~~~~~~~~~ 406 (568)
++|+.-|+.+.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.49 E-value=20 Score=28.24 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=43.9
Q ss_pred CCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHH
Q 041458 479 KPDVDNFNALLLGLCKSRR---TDLSLEVFQMMIEKGQMP--NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 553 (568)
.++..+--.+..++.+..+ ..+.+.++++..+. -.| .....-.|.-++.+.++++++.++++.+++..+.+..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3445555555666665543 45566677777652 233 22333344556777777888888887777777775543
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.42 E-value=19 Score=27.87 Aligned_cols=60 Identities=5% Similarity=0.113 Sum_probs=39.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
..+-++.+...++.|++.....-+++|.+.+++..|.++++-+..+-+.....+..+++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 444555666667777888878888888888888888887777765555544444444443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.35 E-value=2.8 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 520 YTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
|..+...+...|++++|.+.+++.++.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444445555555555555555555443
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.18 E-value=3.3 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 518 TTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.15 E-value=3.3 Score=24.45 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 169 VTYNSLVRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (568)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666665554
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.15 E-value=36 Score=30.95 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=30.7
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHcCCCHHHHHHHHH
Q 041458 235 KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-GFEPNVVSYNILLRSLCMEGRWEEANELLA 297 (568)
Q Consensus 235 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 297 (568)
.++..+...++..+++.+++.+-.+++...... +..-|...|..+|......|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 334444445555555555555555555444333 333445555555555555555444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.32 E-value=24 Score=35.37 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC 423 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 423 (568)
...+.++.-+.++|-.++|+++ ...|+.. .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~-------s~D~d~r----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL-------STDPDQR----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc-------CCChhhh----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3445566666666666665543 2222221 233456677777777766543 3455888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
..+++..|.+.|.+... |..|+-.+...|+-+.-..+-....+.|.. |....+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence 88888888888776543 446666666677766555555555544432 223345667788888877
Q ss_pred HHHHH
Q 041458 504 VFQMM 508 (568)
Q Consensus 504 ~~~~m 508 (568)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 76554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.83 E-value=77 Score=33.78 Aligned_cols=225 Identities=13% Similarity=0.045 Sum_probs=119.3
Q ss_pred HHcCCCHHHHHHHHHHhccCCCCcCH-------hhHHHHHH-HHHhcCChHHHHHHHHHHHHC----CCCCCcccHHHHH
Q 041458 283 LCMEGRWEEANELLAEMDGGDRSPTI-------VTYNILIG-SLAYHGKTDHALKVLDEMVKG----RFRPSAASYNPII 350 (568)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li 350 (568)
.....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 45578899999888876543212221 23333322 334568889998888776653 2233445556666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH------HHHHHhCCC--HHHHHHHHHHHhhCCC---C---CChhhHH
Q 041458 351 ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG------LAMLCGVGK--VQEAFAIIQSLGNKQN---S---SPQEFYK 416 (568)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~a~~~~~~~~~~~~---~---~~~~~~~ 416 (568)
.+..-.|++++|..+..+..+..-.-+...+.. ...+...|. ..+....|........ . +-.-...
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777778999999988887766543444444433 223344563 3333344443332211 1 1112334
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHH
Q 041458 417 YVITSLCRK-GKTYQAFQLLYEMTKYGFTPDSYT--YSSLIRGLCMEGLIEEALEIFVVMEEYDY----KPDVDNFNALL 489 (568)
Q Consensus 417 ~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~li 489 (568)
.+..++.+. +...++..-+.-.......|-..- +..|+......|++++|...++++..... .++...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 122222222222222222222222 23567777889999999999988875322 22333222333
Q ss_pred HH--HHccCChHHHHHHHHH
Q 041458 490 LG--LCKSRRTDLSLEVFQM 507 (568)
Q Consensus 490 ~~--~~~~g~~~~a~~~~~~ 507 (568)
.. ....|+..++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 2356777777766655
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.74 E-value=12 Score=36.32 Aligned_cols=38 Identities=21% Similarity=0.132 Sum_probs=27.1
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
.|...|++..|.+.|.+.+.. +.-++..|-.|..+|..
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 466777777777777777764 55677777777777764
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.31 E-value=40 Score=30.14 Aligned_cols=166 Identities=11% Similarity=0.029 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041458 393 VQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTY-QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFV 471 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 471 (568)
..+-++.+.++.+.+++ +-..|..--......|++. .-+++.+.|.... .-+-..|..--.++..-++++.-+.+-.
T Consensus 94 L~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 44444555555544333 4444443333333444554 5555666666532 2245556655566666666777677766
Q ss_pred HHHhCCCCCChhhHHHHHHHHHc-cC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC--ChhHHHHHHHH
Q 041458 472 VMEEYDYKPDVDNFNALLLGLCK-SR-----RTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH-QD--ELELSAEVLKE 542 (568)
Q Consensus 472 ~m~~~~~~p~~~~~~~li~~~~~-~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g--~~~~a~~~~~~ 542 (568)
++.+.++. |-..||.-.-.... .| ..+.-..+..+++.. ++.+...|+.|-..+.. .| .......+...
T Consensus 172 ~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~ 249 (318)
T KOG0530|consen 172 ELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVEN 249 (318)
T ss_pred HHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHH
Confidence 66665554 33444432111111 11 112222333334432 34456666666555553 33 12223333333
Q ss_pred HH-HcCCCCHHHHHHHHHhhh
Q 041458 543 LQ-LRQVVSESAVERLVMQYD 562 (568)
Q Consensus 543 ~~-~~~~~~~~~~~~l~~~~~ 562 (568)
+. ..+...+..+..++..|.
T Consensus 250 l~~~~~~~sP~lla~l~d~~~ 270 (318)
T KOG0530|consen 250 LYLQLPKRSPFLLAFLLDLYA 270 (318)
T ss_pred HhhccCCCChhHHHHHHHHHH
Confidence 33 333335555555555553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.10 E-value=0.41 Score=38.83 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=58.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 041458 417 YVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR 496 (568)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 496 (568)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356777778888888888888887665556777888888888887777777776621 1122345667777778
Q ss_pred ChHHHHHHHHHHH
Q 041458 497 RTDLSLEVFQMMI 509 (568)
Q Consensus 497 ~~~~a~~~~~~m~ 509 (568)
.++++.-++.++-
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 8888877776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.05 E-value=33 Score=29.09 Aligned_cols=55 Identities=5% Similarity=0.055 Sum_probs=24.4
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
.....|.+|+|..+++...+.+. .......-.+.+...|+.++|+.-|++.++.+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34445555555555544433211 11112222344555555555555555555554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.46 E-value=11 Score=34.81 Aligned_cols=90 Identities=12% Similarity=-0.097 Sum_probs=54.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...|.+.|.+++|+..|.......+. +.+++..-..+|.+...+..|..-....+..+ +.-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 45788899999999998877665443 56677777788888888877776555554321 00112233333333334555
Q ss_pred HHHHHHHHHHHh
Q 041458 464 EEALEIFVVMEE 475 (568)
Q Consensus 464 ~~a~~~~~~m~~ 475 (568)
.+|.+-++...+
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 83.3 bits (204), Expect = 7e-17
Identities = 20/188 (10%), Positives = 52/188 (27%), Gaps = 4/188 (2%)
Query: 201 PNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEA--- 257
P + LL+ A + + + A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 258 IRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGS 317
+ K + YN ++ +G ++E +L + +P +++Y +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 318 LAYHGKTDHAL-KVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKP 376
+ + + + L++M + + A +++ + V K P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 377 NEGTYNGL 384
+ L
Sbjct: 270 PPVNTSKL 277
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.6 bits (184), Expect = 2e-14
Identities = 45/398 (11%), Positives = 112/398 (28%), Gaps = 22/398 (5%)
Query: 78 KLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKA---IKVMEMMVSSGIIPDAS 134
L+ + + +++ A + V +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQ-FLDR 193
Y ++ ++G + ++ ++D G + ++Y + ++ + +++ L++
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 194 LIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGR 253
+ Q+GL A + LL + + A K+ P V+ + LL + +
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD- 285
Query: 254 TEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNI 313
R K P + + L ME + + + +
Sbjct: 286 -------GRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTL 338
Query: 314 LIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373
+ AL+ ++ S P + L V ++++ L +
Sbjct: 339 KTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQAL---- 394
Query: 374 CKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTY---- 429
++ LA Q + + + + KY+
Sbjct: 395 -PAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLP 453
Query: 430 -QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEA 466
Q ++ L P + L E L++
Sbjct: 454 RQYWEALGAPEALREQPWPLPVQMELGKLLAEMLVQAT 491
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.1 bits (180), Expect = 7e-14
Identities = 24/215 (11%), Positives = 63/215 (29%), Gaps = 4/215 (1%)
Query: 131 PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQF 190
P L+ K ++ + + + + L +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 191 LDRL---IQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTG 247
L QK + Y+ ++ ++ + +L + G P+L+SY L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 248 LCKEGRTEEAI-RFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSP 306
+ ++ + I R + +G + + +LL + +++ + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRP 341
V + L+ + K+ + +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLF 304
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 1e-08
Identities = 19/142 (13%), Positives = 51/142 (35%), Gaps = 4/142 (2%)
Query: 412 QEFYKYVITSLCRKGKTYQAFQLL---YEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468
Q+ + A LL + + Y++++ G +G +E +
Sbjct: 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVY 186
Query: 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLE-VFQMMIEKGQMPNETTYTILVEGI 527
+ ++++ PD+ ++ A L + + + ++E + M ++G +L+
Sbjct: 187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
Query: 528 AHQDELELSAEVLKELQLRQVV 549
L+ +V L +
Sbjct: 247 DRATVLKAVHKVKPTFSLPPQL 268
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 3e-15
Identities = 103/642 (16%), Positives = 173/642 (26%), Gaps = 218/642 (33%)
Query: 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDL-CK--ANKMKKAIKVMEMMVSS 127
+T ++ D E V + CK + K + E+
Sbjct: 10 ETGEHQYQYKDILSVFE--------DAFVD------NFDCKDVQDMPKSILSKEEI---D 52
Query: 128 GII--PDASSYTY-LVNCLCKKGNVGYAMQLVEKME-DYGY-----------PT-NTVTY 171
II DA S T L L K + E + +Y + P+ T Y
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 172 NSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKER-----GVHAAMKLL 226
L N NQ + K V Y L +A + R + +
Sbjct: 113 IEQRDRLY---NDNQ-------VFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GV--- 158
Query: 227 DDIIAKG-GKPNLV-----SYNVL---------LT-GLCKEGRTEEAIRFFRDLPSKGFE 270
G GK + SY V L C E + + L + +
Sbjct: 159 -----LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQ-ID 210
Query: 271 PNVV-----SYNI---------LLRSLCMEGRWEEA---------NELLAEMDGGDRSPT 307
PN S NI LR L +E + +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKI 268
Query: 308 IVT------YNILIGSLAYHGKTDHALKVLDE------------MVKGRFRPSAASYNP- 348
++T + L + H DH L + NP
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 349 ---IIARLCSEG-------------KVDLVVK-CLDQMFHRRCKPNE--GTYNGLAM--- 386
IIA +G K+ +++ L+ + +P E ++ L++
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-----EPAEYRKMFDRLSVFPP 383
Query: 387 --------LC---GVGKVQEAFAIIQ-----SLGNKQNSSPQEFYKYVITSL----CRKG 426
L + ++ SL KQ I S+ K
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE----STISIPSIYLELKVKL 439
Query: 427 KTYQAF--QLL--YEMTKY----GFTP---DSYTYSSL---IRGLCMEGLIEEALEIFVV 472
+ A ++ Y + K P D Y YS + ++ + + +F+
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL- 498
Query: 473 MEEYDYKPDVDNF-------NALLLGLCKSRRTDLS-LEVFQMMIEKGQMPNETTYTILV 524
D+ F ++ S L L+ ++ I N+ Y LV
Sbjct: 499 ----DF-----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD----NDPKYERLV 545
Query: 525 EGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEGI 566
I D L E L + ++ R+ + + E I
Sbjct: 546 NAI--LDFLPKIEENLICSKYTDLL------RIALMAEDEAI 579
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 33/208 (15%), Positives = 63/208 (30%), Gaps = 10/208 (4%)
Query: 131 PDASSYTYLVNCLCKKGNVGYAMQLVEK-MEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQ 189
P+ + L + +++ M TNT N + +L+
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 190 FLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLC 249
L + + + ++ K + A K L + + L L
Sbjct: 123 TLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLA 176
Query: 250 K-EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308
+ ++A F+++ K P ++ N +GRWE A +L E D
Sbjct: 177 AGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235
Query: 309 VTYNILIGSLAYHGKTDHALKVLDEMVK 336
N L+ + GK +K
Sbjct: 236 TLIN-LVVLSQHLGKPPEVTNRYLSQLK 262
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 50/342 (14%), Positives = 95/342 (27%), Gaps = 45/342 (13%)
Query: 252 GRTEEAIRFFR----DLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM-----DGG 302
G +EA R + +LP F +V+ ++L L +G + L+ +
Sbjct: 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 87
Query: 303 DRSPTIVTYNILIGSLAYHGKTDHALKVLD------EMVKGRFRPSAASYNPIIARLCSE 356
+ + L G A + + P I A+L
Sbjct: 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147
Query: 357 -GKVDLVVKCLDQ--MFHRRCKPNEG--TYNGLAMLCGV-GKVQEAFAIIQSLGNKQNSS 410
++D +P + L G + A + + L N +
Sbjct: 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207
Query: 411 PQEFYKYVITSLCR------KGKTYQAFQLL--YEMTKYGFTPDSYT-YSSLIRGLCMEG 461
+ R G A L ++ + ++ R + G
Sbjct: 208 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267
Query: 462 LIEEALEIFVVM----EEYDYKPDVDNFNALLLGLC--KSRRTDLSLEVFQMMIEKGQMP 515
E A + + D+ N N LLL ++ R + V ++
Sbjct: 268 EFEPAEIVLEELNENARSLRLMSDL-NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN-R 325
Query: 516 NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERL 557
++EG E A+ L++L + E R
Sbjct: 326 TGFISHFVIEG-------EAMAQQLRQLIQLNTLPELEQHRA 360
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 22/202 (10%)
Query: 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDR---LIQKGLVPNAFTYSF 208
A QL+ + P + + L L+++ ++
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178
Query: 209 LLEAAYKERG-VHAAMKLLDDIIAKGGKPNLVSY------NVLLTGLCKEGRTEEAIRFF 261
+L RG + A L+ + G S V + G A +
Sbjct: 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 238
Query: 262 RDLPSKGFEPN---VVSYNILLRSLCMEGRWEEANELLAEM-----DGGDRSPTIVTYNI 313
R F N + + R+ + G +E A +L E+ S +
Sbjct: 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298
Query: 314 LIGSLAYH--GKTDHALKVLDE 333
L + Y G+ A +VL +
Sbjct: 299 L--NQLYWQAGRKSDAQRVLLD 318
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 12/145 (8%)
Query: 212 AAYKERGVHA-AMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE 270
A +G +A AM+ L+ G + LV++ + R + I + + +
Sbjct: 110 ACEAAQGNYADAMEALEAAPVAGSEH-LVAW-MKAVVYGAAERWTDVIDQVK--SAGKWP 165
Query: 271 PNVVSYNILL---RSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY--HGKTD 325
++ + + + EA L E + ++A G
Sbjct: 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES 225
Query: 326 HALKVLDEMVKGR--FRPSAASYNP 348
A+ +L+ + + +AA +P
Sbjct: 226 AAVALLEWLQTTHPEPKVAAALKDP 250
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-05
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 32/190 (16%)
Query: 163 GYPTNTVTYNSLVRGLCML-----GNLNQSLQFLDRLIQKGLVP-NAFTYSFLLEAAYKE 216
P + + L +LN++ + L ++Q P + +
Sbjct: 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVR 246
Query: 217 RGVH--------AAMKLLDDIIAKGGKPNL-VSYNVLLTGLCKEGRTEEAIRFFRDLPSK 267
H A +D+I+ NL + Y + +G+T+E+ +
Sbjct: 247 HSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAIN----T 302
Query: 268 GFE--PNVVSYNILLRSLCMEGRWEEANELLA---EMDGGDRSPTIVTYNILIGSLAYHG 322
G + + ++Y +L + M+G EA + + P T I + +
Sbjct: 303 GIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR-----PGANTLY-WIENGIFQT 356
Query: 323 KTDHALKVLD 332
+ + LD
Sbjct: 357 SVPYVVPYLD 366
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 568 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.14 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.13 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.09 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.97 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.9 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.76 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.71 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.68 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.68 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.44 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.41 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.39 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.34 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.22 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.04 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.02 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.98 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.96 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.94 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.94 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.93 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.92 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.89 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.81 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.73 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.67 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.63 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.6 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.6 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.56 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.5 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.48 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.39 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.28 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.9 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.87 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.8 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.73 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.69 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.66 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.53 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.44 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.31 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.09 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.08 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.72 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.7 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.67 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.55 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.98 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.51 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.76 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.7 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.51 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.92 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.77 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.04 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.3 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.73 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.31 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.24 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.06 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.13 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.83 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.96 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.02 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.8 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.73 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.23 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.45 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=347.86 Aligned_cols=472 Identities=12% Similarity=0.042 Sum_probs=388.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
+.|.+..+...+..+ ..++...|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|++
T Consensus 65 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 344445555555443 3457788888999999999999999999888854 4677888888889999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHhhHHHHHHHHHHcCCH
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK---------------GLVPNAFTYSFLLEAAYKERGV 219 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~ 219 (568)
+|+++... +++..+++.++.+|.+.|++++|.++|+++... +..++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 98887542 568888899999999999999999988853211 2233578888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhH--------------------------------------HHHHHHHHhcCChHHHHHHH
Q 041458 220 HAAMKLLDDIIAKGGKPNLVSY--------------------------------------NVLLTGLCKEGRTEEAIRFF 261 (568)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~--------------------------------------~~ll~~~~~~g~~~~A~~~~ 261 (568)
++|.++|+++.+.+.. +...+ +.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999988876422 23332 33355667889999999999
Q ss_pred HHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 041458 262 RDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRP 341 (568)
Q Consensus 262 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (568)
+++.+. .++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|+.++|.++++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 999876 5799999999999999999999999999998765 4578899999999999999999999999998654 34
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 342 SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 420 (568)
+..++..++..|.+.|++++|.++|+++.+..+. +...+.. +..+.+.|++++|.++|+++.+..+. +..+|+.++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHH
Confidence 7788999999999999999999999999886443 3444444 88999999999999999999877543 6788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHc
Q 041458 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKPD--VDNFNALLLGLCK 494 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~ 494 (568)
+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999864 337889999999999999999999999999865 66777 7899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 495 SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.++++++++.++.++.....+...|..
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999864 45889999999999999999999999999999999999999998887754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=331.60 Aligned_cols=444 Identities=11% Similarity=0.004 Sum_probs=382.0
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++++|+.+|++++. ..|+..++..++..|.+.|++++|+.+|+.+... .++..+++.++.+|.+.|+++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH
Confidence 456788999999999999986 4568889999999999999999999999998653 568999999999999999999
Q ss_pred hHHHHHHHHH-hC--------------CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH------
Q 041458 151 YAMQLVEKME-DY--------------GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL------ 209 (568)
Q Consensus 151 ~a~~~~~~~~-~~--------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l------ 209 (568)
+|+++|+++. .. +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcc
Confidence 9999999532 21 23456899999999999999999999999999886422 33333332
Q ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 041458 210 --------------------------------LEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEA 257 (568)
Q Consensus 210 --------------------------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 257 (568)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHH
Confidence 44566788999999999998876 57999999999999999999999
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 258 IRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 258 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
.++|+++.+.+.. +..+++.++.+|.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.
T Consensus 325 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999877543 78899999999999999999999999998654 567899999999999999999999999999875
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 338 RFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKY 417 (568)
Q Consensus 338 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 417 (568)
.. .+..+|+.++.+|.+.|++++|+++|+++.+..+.........+..+.+.|++++|.+.|+++.+..+. +..+|+.
T Consensus 403 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 480 (597)
T 2xpi_A 403 DP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNE 480 (597)
T ss_dssp CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 42 367799999999999999999999999999876544334444488999999999999999999887554 7788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKY----GFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+. .+..+|..+..+
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~ 559 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 999999999999999999999875 66787 67999999999999999999999999987653 388999999999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
|.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 999999999999999999852 33566666665554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.6e-31 Score=259.52 Aligned_cols=204 Identities=10% Similarity=0.086 Sum_probs=148.8
Q ss_pred HHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---------hhh
Q 041458 82 AFLQLERMVSKGHKPDV-VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN---------VGY 151 (568)
Q Consensus 82 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 151 (568)
+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444555555544433 34677788888888888888888888888888888888888888876654 466
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77788888777777888888888888888888888888888887777778888888888888888888888888888877
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc
Q 041458 232 KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM 285 (568)
Q Consensus 232 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 285 (568)
.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 778888888888888888888888888888888777777888888777777765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-31 Score=260.08 Aligned_cols=206 Identities=17% Similarity=0.236 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---------hH
Q 041458 116 KAIKVMEMMVSSGIIPDA-SSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN---------LN 185 (568)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~ 185 (568)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|++||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345556667666655443 35788889999999999999999999999999999999999999887654 57
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 186 QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 186 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
+|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88889999988888999999999999999999999999999999888888999999999999999999999999999998
Q ss_pred hCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhc
Q 041458 266 SKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYH 321 (568)
Q Consensus 266 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (568)
+.|+.||..+|++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999998888888999998888887753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-28 Score=235.37 Aligned_cols=383 Identities=15% Similarity=0.035 Sum_probs=286.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 041458 139 LVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERG 218 (568)
Q Consensus 139 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 218 (568)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456677888888888888877652 4456677777888888888888888888877653 4477788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHH
Q 041458 219 VHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAE 298 (568)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 298 (568)
+++|.+.|+++.... +.+...|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888887762 335567888888888888888888888888765322 345566677778888888888888888
Q ss_pred hccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh
Q 041458 299 MDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNE 378 (568)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 378 (568)
+.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++.....+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---- 234 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---- 234 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT----
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc----
Confidence 77653 445677888888888888888888888888775432 445666667777777777777777766655421
Q ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 041458 379 GTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLC 458 (568)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 458 (568)
.+..++..+...+.+.|++++|++.|+++.+... .+..+|..+...+.
T Consensus 235 -------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 235 -------------------------------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALK 282 (388)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHH
T ss_pred -------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 1445667777778888888888888888777532 24567778888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041458 459 MEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
+.|++++|.+.|+++.+... .+..++..+...+...|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+
T Consensus 283 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888876533 36777888888888888888888888888764 24456778888888888888888888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 539 VLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
.++++++..+........+...+...|
T Consensus 361 ~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 888888888888888888777776655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-27 Score=229.80 Aligned_cols=382 Identities=14% Similarity=0.044 Sum_probs=317.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN 183 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 183 (568)
+...+.+.|++++|++.++.+.+..+ .+...+..+...+...|++++|...++...+. .|.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCC
Confidence 45677899999999999999988642 35667778888899999999999999998875 35688899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 184 LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRD 263 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 263 (568)
+++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998863 3356789999999999999999999999999873 33556777888899999999999999999
Q ss_pred hhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 041458 264 LPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA 343 (568)
Q Consensus 264 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (568)
+.+.... +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+..+. +.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 9876332 57889999999999999999999999998765 456788999999999999999999999999876432 56
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC 423 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 423 (568)
.++..+...+.+.|++++|...++++.+..+. +...|..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----------------------------------~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----------------------------------FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------------------CHHHHHHHHHHHH
Confidence 78888888999999999999998888765321 3455777888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+..+ .+...+..+...|.+.|++++|.+
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888763 44677888888889999999999999988887533 267788888999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 041458 504 VFQMMIEKGQMP-NETTYTILVEGIAHQD 531 (568)
Q Consensus 504 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 531 (568)
.++++.+. .| +...|..+...+...|
T Consensus 361 ~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99998874 44 5667777766665554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-25 Score=221.40 Aligned_cols=450 Identities=12% Similarity=0.044 Sum_probs=252.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
..+......+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|++.++++.+.+ |.+..+|..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456667777888888888888888888764 678888888888888888888888888887753 44677888888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG---RTE 255 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~ 255 (568)
.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+..-........ ...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 888888888888888887653 3444444444444443333333333322221111111111110000000000 011
Q ss_pred HHHHHHHHhhhC------CCCCChhHHHHHHHHHHc---CCCHHHHHHHHHHhcc-----CCC--------CcCHhhHHH
Q 041458 256 EAIRFFRDLPSK------GFEPNVVSYNILLRSLCM---EGRWEEANELLAEMDG-----GDR--------SPTIVTYNI 313 (568)
Q Consensus 256 ~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 313 (568)
.+...+...... ..+.+...+......+.. .|++++|...++++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 111111110000 001112233333333332 5666666666666554 200 112344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCH
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKV 393 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (568)
+...+...|++++|...|+++.+.... ...+..+...+...|++++|...++++....+............+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 556666666666666666666554322 455555556666666666666666666655433333333335555666666
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 394 QEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVM 473 (568)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 473 (568)
++|...|+++....+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554333 34456666666677777777777777666542 224556666677777777777777777666
Q ss_pred HhCCCC-CC----hhhHHHHHHHHHc---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 474 EEYDYK-PD----VDNFNALLLGLCK---SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 474 ~~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
.+.... ++ ...+..+...+.. .|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 542111 11 2366666777777 777777777777776642 33556666677777777777777777777777
Q ss_pred cCCCCHHHHHHH
Q 041458 546 RQVVSESAVERL 557 (568)
Q Consensus 546 ~~~~~~~~~~~l 557 (568)
.++.++.....+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 776655554433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-24 Score=214.38 Aligned_cols=435 Identities=10% Similarity=-0.042 Sum_probs=301.4
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 151 (568)
.+.+.|++++|+..|+++++.. |+...|..+...+.+.|++++|++.++.+.+.+. .+..+|..+..++.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHH
Confidence 4567899999999999999864 6899999999999999999999999999998753 367789999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
|.+.|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-...............+...+..
T Consensus 92 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 999999999875 3455555555555555444444444443332222222222111111111111111111111111111
Q ss_pred cCC---------CCCHhhHHHHHHHHHh---cCChHHHHHHHHHhhh-----CCC--------CCChhHHHHHHHHHHcC
Q 041458 232 KGG---------KPNLVSYNVLLTGLCK---EGRTEEAIRFFRDLPS-----KGF--------EPNVVSYNILLRSLCME 286 (568)
Q Consensus 232 ~~~---------~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~p~~~~~~~l~~~~~~~ 286 (568)
... +.+...+......+.. .|++++|..+|+++.+ ..- +.+...+..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 100 1123344444444443 7888888888888766 211 12345667777788888
Q ss_pred CCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 041458 287 GRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCL 366 (568)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 366 (568)
|++++|...++++.+... +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+
T Consensus 251 ~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 888888888888776542 277777888888888888888888888877543 25667777888888888888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C
Q 041458 367 DQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT-P 445 (568)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p 445 (568)
+++.+..+............+...|++++|...++.+....+. +...+..+...+...|++++|...++++.+.... +
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 8888776554444444466777888888888888887765443 4567888899999999999999999988764211 1
Q ss_pred C----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 446 D----SYTYSSLIRGLCM---EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 446 ~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
+ ..++..+...+.. .|++++|.+.++.+.+.... +...+..+...|.+.|++++|.+.++++.+. .|+.
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 1 2378899999999 99999999999999875433 6788889999999999999999999999985 4554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-22 Score=205.71 Aligned_cols=443 Identities=12% Similarity=0.085 Sum_probs=277.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRG 177 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 177 (568)
...+..+...+.+.|++++|+..|+.+.+... .+..+|..+..+|.+.|++++|++.|+++.+.+ |.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 35567778888888999999999998887653 367788888888888999999999998888763 4567888888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChH
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG--KPNLVSYNVLLTGLCKEGRTE 255 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~ 255 (568)
+...|++++|.+.|+.+ .. .|+ .....+..+...+....|...++++..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 88999999999888633 22 222 222233445555556778888887754310 001111223334444555665
Q ss_pred HHHHHHHHhhhCCCCCChh-HHHHHHHHHHcC--------CCHHHHHHHHHHhccCCCCcCH-------hhHHHHHHHHH
Q 041458 256 EAIRFFRDLPSKGFEPNVV-SYNILLRSLCME--------GRWEEANELLAEMDGGDRSPTI-------VTYNILIGSLA 319 (568)
Q Consensus 256 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 319 (568)
.+...+...... .+... ....+...+... |++++|..+++++.+.. +.+. .++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 555554443322 11111 222222222222 36777777777776553 2222 24555566677
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAI 399 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 399 (568)
..|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+..+............+...|++++|...
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777777777777653 34566666777777777777777777777766543333333336667777777777777
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041458 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK 479 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (568)
|+++....+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+....
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 7777665443 34567777777777788888888887777653 224556777777777778888888877776542211
Q ss_pred -----CChhhHHHHHHHHHcc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 480 -----PDVDNFNALLLGLCKS----------RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 480 -----p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
.....+..+...+... |++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1112233444556666 77788888887777642 3456777777777777888888888888887
Q ss_pred HcCCCCHHHHH
Q 041458 545 LRQVVSESAVE 555 (568)
Q Consensus 545 ~~~~~~~~~~~ 555 (568)
+..+.+.....
T Consensus 490 ~~~~~~~~~~~ 500 (537)
T 3fp2_A 490 ILARTMDEKLQ 500 (537)
T ss_dssp HHC--CHHHHH
T ss_pred HhCCCcHHHHH
Confidence 77777655544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-22 Score=200.27 Aligned_cols=315 Identities=12% Similarity=0.077 Sum_probs=159.8
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
+...+..+...+.+.|++++|+++|+++.+. .+.+..+|..+..+|...|++++|.+.|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 5556677777777777777777777777654 23456677777777777777777777777776653 224566666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCC
Q 041458 212 AAYKERGVHAAMKLLDDIIAKGGKPNL---VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGR 288 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 288 (568)
.+.+.|++++|.+.|+++..... .+. ..+..++..+.. ..+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 77777777777777777665421 123 444444333100 001112223444555
Q ss_pred HHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 289 WEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
+++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+... .+..++..+...|...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555554432 23444555555555555555555555555544321 2344455555555555555555555555
Q ss_pred HhhCCCCCChhhHH------------HHHHHHhCCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHH
Q 041458 369 MFHRRCKPNEGTYN------------GLAMLCGVGKVQEAFAIIQSLGNKQNSSP---QEFYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 369 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 433 (568)
+....+........ ....+...|++++|...|+++....+... ...+..+...+.+.|++++|+.
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 54432211111000 02233333444444444444333222100 1234444455555555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 434 LLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
.++++.+.. +.+..+|..+..+|...|++++|.+.++++.+
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555544431 11344455555555555555555555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-22 Score=198.42 Aligned_cols=368 Identities=12% Similarity=0.058 Sum_probs=265.4
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 041458 165 PTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVL 244 (568)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (568)
|.+...+..+...+.+.|++++|.++|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3456667777777777777777777777776542 2356666667777777777777777777776653 2245566666
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCC-h---hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 245 LTGLCKEGRTEEAIRFFRDLPSKGFEPN-V---VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
..+|.+.|++++|.+.|+++.+. .|+ . ..+..+...+.. ..+..+...+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~ 155 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 66667777777777777666654 222 2 334444333211 122334556888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHH
Q 041458 321 HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAII 400 (568)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 400 (568)
.|++++|...|+++.+... .+...+..+..+|.+.|++++|...++++.+..+......+.....+...|++++|...|
T Consensus 156 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987643 367788999999999999999999999998875443333344478889999999999999
Q ss_pred HHHhhCCCCCChhhHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCH
Q 041458 401 QSLGNKQNSSPQEFYKYV------------ITSLCRKGKTYQAFQLLYEMTKYGFTPD-----SYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 401 ~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~ 463 (568)
+++....+. +...+..+ ...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++
T Consensus 235 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 235 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 999876544 34444444 78899999999999999999885 444 34788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH------------HHhc
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEG------------IAHQ 530 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~------------~~~~ 530 (568)
++|.+.++.+.+.... +...|..+..+|...|++++|.+.++++.+. .| +...+..+..+ |...
T Consensus 312 ~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 9999999999865433 7889999999999999999999999999984 45 55666666532 3334
Q ss_pred C-----ChhHHHHHHHH-HHHcCCC---CH-------HHHHHHHHhhhhcCC
Q 041458 531 D-----ELELSAEVLKE-LQLRQVV---SE-------SAVERLVMQYDFEGI 566 (568)
Q Consensus 531 g-----~~~~a~~~~~~-~~~~~~~---~~-------~~~~~l~~~~~~~g~ 566 (568)
| +.+++.+.+++ ..+..+. .+ ..+..+...|..-|.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d 440 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred CCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 4 56778888887 5666554 11 256667777766554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-22 Score=205.90 Aligned_cols=467 Identities=12% Similarity=0.041 Sum_probs=315.9
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++++|+..|+++++.. +.+...|..+...+.+.|++++|++.|+++.+.+. .+..++..+..++...|+++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHH
Confidence 34677899999999999998874 45889999999999999999999999999998753 36788999999999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK------GLVPNAFTYSFLLEAAYKERGVHAAMK 224 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~ 224 (568)
+|++.|+.+.. .|+ .....+..+...+....|...++++... ...|+. ..+..+....+.+.+..
T Consensus 111 ~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 111 DAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChHHHHH
Confidence 99999974422 122 2233355566666778899999988653 122332 33444555566555544
Q ss_pred HHHHHHHcCCCCCHh-hHHHHHHHHHh--------cCChHHHHHHHHHhhhCCCCCC-------hhHHHHHHHHHHcCCC
Q 041458 225 LLDDIIAKGGKPNLV-SYNVLLTGLCK--------EGRTEEAIRFFRDLPSKGFEPN-------VVSYNILLRSLCMEGR 288 (568)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~ 288 (568)
.+...... .+... ....+...+.. .|++++|..+|+++.+.... + ..++..+...+...|+
T Consensus 182 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 182 SVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp TSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhccc
Confidence 43332211 11111 22233322222 24788899999888765322 2 2346667777888899
Q ss_pred HHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 289 WEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
+++|...++++... .|+...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999998876 34577888888889999999999999998887643 2567788888889999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----
Q 041458 369 MFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT---- 444 (568)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---- 444 (568)
+.+..+......+.....+...|++++|...++++....+. +...+..+...+...|++++|.+.|+++.+....
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 98876554445555577888899999999999988876544 5567888899999999999999999998764211
Q ss_pred -CChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 041458 445 -PDSYTYSSLIRGLCME----------GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 445 -p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 513 (568)
.....+..+...+... |++++|...|+++.+.... +...+..+...|.+.|++++|.+.++++.+.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 491 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL-- 491 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 1112244555677777 9999999999999876443 6788999999999999999999999999985
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCC
Q 041458 514 MPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (568)
.|+.......+. +.++...-..+ +.++.-...+..++..|...|+
T Consensus 492 ~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~ 536 (537)
T 3fp2_A 492 ARTMDEKLQATT-------FAEAAKIQKRL-RADPIISAKMELTLARYRAKGM 536 (537)
T ss_dssp C--CHHHHHHHH-------HHHHHHHHHHH-HTC-------------------
T ss_pred CCCcHHHHHHHh-------HHHHHHHHHhc-cccHHHHHHHhhHHHHHhhccC
Confidence 343222211111 23333333333 4445555555666666665553
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-18 Score=168.24 Aligned_cols=397 Identities=11% Similarity=0.018 Sum_probs=277.7
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHH
Q 041458 83 FLQLERMVSKGHKPDVVQATNLLYDLCK----ANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGYAMQ 154 (568)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 154 (568)
+..++...+. .+...+..+...|.. .+++++|+..|+...+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4445555443 367777888888887 889999999999988864 67778888888888 889999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHH
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK----ERGVHAAMKLL 226 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~ 226 (568)
.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999988865 67777788888887 788999999999888765 56677777777776 77888888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc----CCCHHHHHHHHHH
Q 041458 227 DDIIAKGGKPNLVSYNVLLTGLCK----EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM----EGRWEEANELLAE 298 (568)
Q Consensus 227 ~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 298 (568)
++..+.| +...+..+...|.. .++.++|.++|++..+.| +...+..+...|.. .+++++|..+|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 8887764 56677777777776 788888888888877654 55667777777765 7788888888888
Q ss_pred hccCCCCcCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 041458 299 MDGGDRSPTIVTYNILIGSLAY----HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSE-----GKVDLVVKCLDQM 369 (568)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~ 369 (568)
..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|... +++++|...+++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 77654 45566666777766 777888888888777653 344555555555555 5666666666655
Q ss_pred hhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCC
Q 041458 370 FHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKG---KTYQAFQLLYEMTKYGFTPD 446 (568)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~ 446 (568)
.+.+ +...+..+...|...| +.++|++.|++..+.| +
T Consensus 323 ~~~~-------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 323 AEQG-------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp HHTT-------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred HhcC-------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 5432 2334445555555544 6677777777777653 5
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCC-C-C
Q 041458 447 SYTYSSLIRGLCM----EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK----SRRTDLSLEVFQMMIEKGQM-P-N 516 (568)
Q Consensus 447 ~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p-~ 516 (568)
...+..|...|.. .+++++|.++|++..+.+ +...+..+...|.. .++.++|.+.|++..+.+.. | +
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 439 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT 439 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence 5667777777777 778888888888877654 46677777777776 77888888888888776432 2 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 517 ETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
......+...+. .+.+.+.+..++..+..+
T Consensus 440 ~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 440 ENRNITEKKLTA--KQLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HHHHHHHTTSCH--HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCH--hHHHHHHHHHHHHHHHHH
Confidence 333333322222 234455555555555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-19 Score=170.75 Aligned_cols=331 Identities=9% Similarity=0.041 Sum_probs=217.0
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHH
Q 041458 202 NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLR 281 (568)
Q Consensus 202 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 281 (568)
|...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34566777777888888888888888887763 335677777888888888888888888887765322 5567777778
Q ss_pred HHHcCCCHHHHHHHHHHhccCCCC---cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 282 SLCMEGRWEEANELLAEMDGGDRS---PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
.+...|++++|...++++.+.. + .+...+..+...+. ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 8888888888888888877653 2 23334433311000 0001112334444555
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM 438 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (568)
+++|...++++.+..+............+...|++++|...++++....+. +...+..+...+...|++++|...+++.
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555554443322222222244445555555555555555544322 4556777777777778888888888777
Q ss_pred HHCCCCCChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCChHHHH
Q 041458 439 TKYGFTPDSYTYS------------SLIRGLCMEGLIEEALEIFVVMEEYDYKPDV----DNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 439 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~ 502 (568)
.+... .+...+. .+...+...|++++|.+.++++.+.... +. ..+..+...+...|++++|.
T Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 76421 1222222 3366688889999999999888865333 33 23455778888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhh
Q 041458 503 EVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 503 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
+.++++.+. .+.+..+|..+...+...|++++|.+.++++++..+.+......+.+.+.
T Consensus 293 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 999998885 24477888888899999999999999999999999888887777766654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-17 Score=164.72 Aligned_cols=369 Identities=12% Similarity=0.022 Sum_probs=254.6
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHH
Q 041458 118 IKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQ 189 (568)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 189 (568)
+..+....+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44555555543 56666666666666 677788888887777654 56677777777777 777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHH
Q 041458 190 FLDRLIQKGLVPNAFTYSFLLEAAYK----ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK----EGRTEEAIRFF 261 (568)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~ 261 (568)
.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777777654 55666666666666 667777777777776654 44555566666655 56677777777
Q ss_pred HHhhhCCCCCChhHHHHHHHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh----cCChHHHHHHHHH
Q 041458 262 RDLPSKGFEPNVVSYNILLRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY----HGKTDHALKVLDE 333 (568)
Q Consensus 262 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 333 (568)
++..+.| +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .++.++|.++|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7666553 45566666666665 666677777766666544 44555556655554 5666666666666
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChh
Q 041458 334 MVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQE 413 (568)
Q Consensus 334 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 413 (568)
..+.+ +...+..+...|... ....++.++|...|++..+.+ +..
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g------------------------------~~~~~d~~~A~~~~~~a~~~~---~~~ 292 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQG------------------------------LAGAKEPLKALEWYRKSAEQG---NSD 292 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHT------------------------------TTSSCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHCC---CHHHHHHHHHHHHCC------------------------------CCCCCCHHHHHHHHHHHHHcC---CHH
Confidence 65543 223333333333330 000344555555555544432 344
Q ss_pred hHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhH
Q 041458 414 FYKYVITSLCRK-----GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG---LIEEALEIFVVMEEYDYKPDVDNF 485 (568)
Q Consensus 414 ~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~ 485 (568)
.+..+...|... ++.++|+..|++..+.| +...+..+...|...| ++++|.++|++..+.| +...+
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 366 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQ 366 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHH
Confidence 556666677766 89999999999998865 4567788888888766 8899999999999864 67889
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 041458 486 NALLLGLCK----SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH----QDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 486 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~ 549 (568)
..+...|.. .+++++|.+.+++..+.| +...+..|...|.. .++.++|..++++..+.++.
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999988 899999999999999865 57788888888888 89999999999999999965
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-18 Score=173.27 Aligned_cols=434 Identities=10% Similarity=0.003 Sum_probs=287.2
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 041458 86 LERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYP 165 (568)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 165 (568)
|++.++.. +-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|.++|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555543 447888888887 477899999999999998764 3367788889999999999999999999988753
Q ss_pred CcHHHHHHHHHHH-HhcCChHHHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 041458 166 TNTVTYNSLVRGL-CMLGNLNQSLQ----FLDRLIQK-GLVP-NAFTYSFLLEAAYK---------ERGVHAAMKLLDDI 229 (568)
Q Consensus 166 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~~-~~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~ 229 (568)
|+...|..++... ...|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777787777533 35677776665 66666542 4433 45667777666554 57778888888887
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHH------hccCC
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAE------MDGGD 303 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~~~ 303 (568)
+..........|..........|. ..+..++. .+.+++..|..++.+ ..+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 763111111233322221100110 01111110 122345555555544 22211
Q ss_pred ---CCcC--------HhhHHHHHHHHHhc----CCh----HHHHHHHHHHHHCCCCCCcccHHHHHHHHHh-------cC
Q 041458 304 ---RSPT--------IVTYNILIGSLAYH----GKT----DHALKVLDEMVKGRFRPSAASYNPIIARLCS-------EG 357 (568)
Q Consensus 304 ---~~~~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~ 357 (568)
++|+ ...|...+...... ++. +++..+|++.+... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2332 23444444333221 222 36777888877653 2356677777777665 68
Q ss_pred CHH-------HHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 041458 358 KVD-------LVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTY 429 (568)
Q Consensus 358 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 429 (568)
+++ +|..++++.++.-.+.+...+.. +..+.+.|++++|..+|+++.+..+......|..++..+.+.|+.+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH
Confidence 876 88889988886211222333333 6677788999999999998887644322357888888888999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRG-LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMM 508 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 508 (568)
+|.++|++..+.. +.+...|...+.. +...|+.++|..+|+...+..+. +...|..++..+.+.|+.++|..+|++.
T Consensus 374 ~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 374 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 9999999998752 2223333333322 33689999999999998865332 6889999999999999999999999999
Q ss_pred HHCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 509 IEKG-QMP--NETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 509 ~~~g-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+..+ ..| ....|...+......|+.+.+.++.+++.+..+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9863 233 2458888888888999999999999999988774
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-18 Score=167.29 Aligned_cols=331 Identities=12% Similarity=0.041 Sum_probs=247.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 041458 167 NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLT 246 (568)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 246 (568)
++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 56788899999999999999999999998864 3468899999999999999999999999999873 336788999999
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCC--CChhHHHHH------------HHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHH
Q 041458 247 GLCKEGRTEEAIRFFRDLPSKGFE--PNVVSYNIL------------LRSLCMEGRWEEANELLAEMDGGDRSPTIVTYN 312 (568)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (568)
.+...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999876320 144445444 467778888888888888877654 45677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCC
Q 041458 313 ILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGK 392 (568)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (568)
.+...+...|++++|...++++.+... .+...+..+...+...|++++|...+++..+..+..... +
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~----------- 225 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC-F----------- 225 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-H-----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHH-H-----------
Confidence 888888888888888888888877642 356677777778888888888888888777653222111 1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 041458 393 VQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS----YTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~ 468 (568)
..+..+. .......+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|.+
T Consensus 226 -----~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 226 -----AHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -----HHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----HHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 0111000 0111223466678889999999999988875322 22 234557788889999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 041458 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIA 528 (568)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 528 (568)
.++...+.... +...|..+...|...|++++|.+.++++.+. .| +...+..+..+..
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 294 ICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 99998875433 7788889999999999999999999999875 45 4566665555544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-17 Score=167.63 Aligned_cols=410 Identities=10% Similarity=-0.009 Sum_probs=260.2
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCChhhH
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNC-LCKKGNVGYA 152 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a 152 (568)
.+.|++++|..+|+++++. .+.+...|..++..+.+.|+++.|..+|+++.+.. |+...|..++.. ....|+++.|
T Consensus 23 ~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhH
Confidence 5679999999999999987 45588899999999999999999999999999874 677788877753 3456888887
Q ss_pred HH----HHHHHHh-CCCC-CcHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 041458 153 MQ----LVEKMED-YGYP-TNTVTYNSLVRGLCM---------LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKER 217 (568)
Q Consensus 153 ~~----~~~~~~~-~~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 217 (568)
.+ +|++... .|.. ++...|...+....+ .|+++.|..+|++.++....+....|..........+
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 76 7776654 3433 357788888887765 6889999999999987311111233333222111111
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh------hhCC---CCCC--------hhHHHHHH
Q 041458 218 GVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL------PSKG---FEPN--------VVSYNILL 280 (568)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~------~~~~---~~p~--------~~~~~~l~ 280 (568)
. ..+..+ +. .+.++++.|..++..+ .+.. +.|+ ...|...+
T Consensus 180 ~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 180 I-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp H-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred h-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 0 001111 10 0123344444444431 1111 1222 13344333
Q ss_pred HHHHcC----CCH----HHHHHHHHHhccCCCCcCHhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCC
Q 041458 281 RSLCME----GRW----EEANELLAEMDGGDRSPTIVTYNILIGSLAY-------HGKTD-------HALKVLDEMVKGR 338 (568)
Q Consensus 281 ~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~ 338 (568)
...... ++. +++..+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+.-
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 322211 222 35566666665542 3456666666666654 57765 6777777776521
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 339 FRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKY 417 (568)
Q Consensus 339 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 417 (568)
.+.+...|..++..+.+.|++++|..+|+++++..+......+.. +..+.+.|+.++|..+|++..+..+. +...|..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~ 395 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVT 395 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHH
Confidence 222456667777777777777777777777776532211123333 44555677777788888777765332 2222222
Q ss_pred HHH-HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--ChhhHHHHHHHHH
Q 041458 418 VIT-SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY-KP--DVDNFNALLLGLC 493 (568)
Q Consensus 418 li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p--~~~~~~~li~~~~ 493 (568)
.+. .+...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+. .| ....|...+....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 221 2335789999999999887752 22567888888888899999999999999887532 22 2447888888888
Q ss_pred ccCChHHHHHHHHHHHHC
Q 041458 494 KSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~ 511 (568)
..|+.+.+.++.+++.+.
T Consensus 475 ~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HSSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 889999999999888874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=164.02 Aligned_cols=281 Identities=9% Similarity=-0.087 Sum_probs=126.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
+..+...+...|++++|.++|+++.+.... +...+..++.++...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 333344444444444444444444333111 22233333344444444444444444443322 2233344444444444
Q ss_pred cC-ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHH
Q 041458 321 HG-KTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAI 399 (568)
Q Consensus 321 ~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 399 (568)
.| ++++|.+.|+++.+.... +...|..+...+...|++++|...++++.+..+......+.....+...|++++|...
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44 444444444444433211 2333444444444444444444444444433222222222222233333333333333
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041458 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYG--------FTPDSYTYSSLIRGLCMEGLIEEALEIFV 471 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 471 (568)
+++.....+. +...+..+...+...|++++|...+++..+.. ...+..++..+...+...|++++|.+.++
T Consensus 182 ~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3333332221 33445555556666666666666666555421 02223455666666666666666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 472 VMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 472 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
+..+.... +...+..+...|.+.|++++|.+.++++.+.. +.+...+..+..++
T Consensus 261 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 261 QALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 66544322 45556666666666666666666666665531 22445555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-18 Score=164.37 Aligned_cols=291 Identities=11% Similarity=-0.019 Sum_probs=247.7
Q ss_pred CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 041458 270 EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI 349 (568)
Q Consensus 270 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (568)
..+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++.+... .+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 4466778888999999999999999999998765 45667788888999999999999999999988643 367788889
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 041458 350 IARLCSEG-KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKT 428 (568)
Q Consensus 350 i~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 428 (568)
...+...| ++++|...++++.+..+......+.....+...|++++|...|+++....+. +...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 99999999 9999999999999876555555555578889999999999999999887554 445677789999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHccCChHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD--------YKPDVDNFNALLLGLCKSRRTDL 500 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 500 (568)
++|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.+.. .+.+...+..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999864 3357889999999999999999999999987531 13346789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh-hhcC
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY-DFEG 565 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g 565 (568)
|.+.++++.+.. +.+...|..+...+...|++++|.++++++.+..+.+......+...+ ...|
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence 999999999863 446788999999999999999999999999999999999999998887 3443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-18 Score=166.20 Aligned_cols=289 Identities=10% Similarity=-0.042 Sum_probs=194.6
Q ss_pred cCChHHHHH-HHHHhhhCCC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH
Q 041458 251 EGRTEEAIR-FFRDLPSKGF---EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH 326 (568)
Q Consensus 251 ~g~~~~A~~-~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (568)
.|++++|.. .|++...... ..+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355555655 5554433211 1123445555666666666666666666665543 3345556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH---------------HHHHHHhCC
Q 041458 327 ALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYN---------------GLAMLCGVG 391 (568)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ 391 (568)
|...|+++.+... .+..++..+...+...|++++|...++++....+........ .+..+...|
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 6666666655432 244555556666666666666666666666544332222110 122333778
Q ss_pred CHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 392 KVQEAFAIIQSLGNKQNSS-PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
++++|...|+++....+.. +...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.|
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8899999998887765543 56788889999999999999999999988763 335778999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCChhHHHHH
Q 041458 471 VVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN-----------ETTYTILVEGIAHQDELELSAEV 539 (568)
Q Consensus 471 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g~~~~a~~~ 539 (568)
+++.+.... +...+..+..+|.+.|++++|.+.++++.+.. +.+ ..+|..+..++...|+.++|..+
T Consensus 275 ~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 275 RRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 999875433 67889999999999999999999999998742 112 68899999999999999999988
Q ss_pred HHHHH
Q 041458 540 LKELQ 544 (568)
Q Consensus 540 ~~~~~ 544 (568)
+++.+
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 77543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-18 Score=164.24 Aligned_cols=291 Identities=13% Similarity=0.034 Sum_probs=219.2
Q ss_pred hhccCChHHHHH-HHHHHHhCCCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041458 73 RHRDHKLNDAFL-QLERMVSKGHK---PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN 148 (568)
Q Consensus 73 ~~~~~~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 148 (568)
+...|++++|+. .|++.+..... .+...+..+...+.+.|++++|+..|+.+.+... .+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 344578888888 77765543221 1356678888999999999999999999998753 367788899999999999
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH---------------HHHHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSF---------------LLEAA 213 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---------------li~~~ 213 (568)
+++|++.|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998764 457889999999999999999999999999886432 2222221 23334
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 214 YKERGVHAAMKLLDDIIAKGGKP-NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
...|++++|...|+++....... +..++..+...+.+.|++++|...|+++.+... .+...+..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHH
Confidence 48889999999999988773321 577888888899999999999999998877632 2567888888999999999999
Q ss_pred HHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------CcccHHHHHHHHHhcCCHHHH
Q 041458 293 NELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRP----------SAASYNPIIARLCSEGKVDLV 362 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a 362 (568)
...++++.+.. +.+..++..+...|.+.|++++|...|+++.+..... ...+|..+..++...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999887654 4567788889999999999999999998887642211 146788888888899999888
Q ss_pred HHHHHH
Q 041458 363 VKCLDQ 368 (568)
Q Consensus 363 ~~~~~~ 368 (568)
..++.+
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 877653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-17 Score=153.77 Aligned_cols=239 Identities=15% Similarity=0.145 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
+.|++++|...++++ ++...|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 445566666666655 12235666666666666666666666432 355566666666666666666666
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG 234 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 234 (568)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55544442 2345556666666666666666665553 245556666666666666666666666644
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHH
Q 041458 235 KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNIL 314 (568)
Q Consensus 235 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (568)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 246666666666666666666666551 55666666666666666666644433321 122223345
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 041458 315 IGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCS 355 (568)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 355 (568)
+..|.+.|.+++|..+++..+... +-....|+.+.-+|++
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 556666666666666666655433 2233444444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=166.56 Aligned_cols=265 Identities=9% Similarity=-0.031 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 353 (568)
..+..+...+.+.|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++.+... .+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 334555555555555555555555554433 33445555555555555555555555555554321 1344555555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhH----------HHHHHHHhCCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHH
Q 041458 354 CSEGKVDLVVKCLDQMFHRRCKPNEGTY----------NGLAMLCGVGKVQEAFAIIQSLGNKQNSS-PQEFYKYVITSL 422 (568)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 422 (568)
...|++++|...++++.+..+....... .....+...|++++|...|+++....+.. +...+..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 5555555555555555543211111110 11345566777777777777776654432 567788899999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|.+.|+++.+.... +...|..+..+|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998763 336788999999999999999999999999876433 6888999999999999999999
Q ss_pred HHHHHHHHCCC---CC--------CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 503 EVFQMMIEKGQ---MP--------NETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 503 ~~~~~m~~~g~---~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
+.++++.+... .| +..+|..+..++...|+.+.+.++.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999987410 00 257899999999999999988877654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-15 Score=154.87 Aligned_cols=409 Identities=14% Similarity=0.114 Sum_probs=271.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGI--IPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLV 175 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 175 (568)
+.--...+++|...|.+.+|+++++++...+- .-+...-+.++.+..+. +..+..+..+++... + ...+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHH
Confidence 33445566777777888888888887774321 12334455566555555 445555555544321 1 33466
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTE 255 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 255 (568)
..+...|.+++|.++|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHH
Confidence 77777888888888888752 11222222222 6677888887777552 5677778888888888888
Q ss_pred HHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 256 EAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMV 335 (568)
Q Consensus 256 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (568)
+|++.|.+.. |...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.... .
T Consensus 1123 EAIdsYiKAd------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I 1190 (1630)
T 1xi4_A 1123 EAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----I 1190 (1630)
T ss_pred HHHHHHHhcC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----H
Confidence 8888886642 66777778888888888888888887766543 2333333577788888877753333 2
Q ss_pred HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhH
Q 041458 336 KGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFY 415 (568)
Q Consensus 336 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 415 (568)
+ .++...|..+...|...|++++|..+|..+. .....+..+++.|++++|.+.+++.. +..+|
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~--------ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh--------HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 2 2355566677778888888888888887751 22233677788888888888888763 45778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 041458 416 KYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS 495 (568)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 495 (568)
..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-+..+|.+.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 88888888888888887766542 3355667788999999999999999998887554 33556677777777664
Q ss_pred --CChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------------CCCCHHHHH
Q 041458 496 --RRTDLSLEVFQMMIEKGQMP------NETTYTILVEGIAHQDELELSAEVLKELQLR------------QVVSESAVE 555 (568)
Q Consensus 496 --g~~~~a~~~~~~m~~~g~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------~~~~~~~~~ 555 (568)
++..++.++|..-.. ++| +...|.-++-.|.+.|+++.|...+-+-... .+.+++.+.
T Consensus 1328 ~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyy 1405 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 1405 (1630)
T ss_pred CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHH
Confidence 345555555553332 233 5678999999999999999987433222111 455888888
Q ss_pred HHHHhhhhcC
Q 041458 556 RLVMQYDFEG 565 (568)
Q Consensus 556 ~l~~~~~~~g 565 (568)
+.+..|...+
T Consensus 1406 kai~Fyl~~~ 1415 (1630)
T 1xi4_A 1406 RAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHhhC
Confidence 8888876443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-17 Score=158.22 Aligned_cols=268 Identities=15% Similarity=0.027 Sum_probs=207.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...+..+...+.+.|++++|+..|+.+.+... .+..+|..+..+|...|++++|++.|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 455688888999999999999999999988653 367889999999999999999999999998763 456889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC---------CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLV---------PNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-PNLVSYNVLLT 246 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~ 246 (568)
+|...|++++|.+.|+++.+.... .....+..+...+...|++++|.+.|+++...... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999875211 01222334577888889999999999999887332 15778888999
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH
Q 041458 247 GLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH 326 (568)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (568)
.|...|++++|.+.|+++.+... .+..+|..+..+|...|++++|...++++.+.. +.+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999887633 367788899999999999999999999887764 4467888889999999999999
Q ss_pred HHHHHHHHHHCCCC-----------CCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 327 ALKVLDEMVKGRFR-----------PSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 327 a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
|...|+++.+.... .+...|..+..++...|+.+.+..+..+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999988764211 1356778888888888888877766554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-14 Score=149.43 Aligned_cols=372 Identities=15% Similarity=0.127 Sum_probs=238.0
Q ss_pred chhhccCChHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGH--KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN 148 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 148 (568)
..|...|.+.+|+.+++..+..+. .-+....+.++....+. +..+..+..+..... + ..-+...+...|.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCC
Confidence 457789999999999999884421 13445566666666665 445555555554421 1 3336667777888
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDD 228 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 228 (568)
+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|...|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 8888888887531 2333333332 5677888888777552 567778888888888888888888855
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 229 IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
. .|...|..++.++.+.|++++|.++|...++.. ++....+.++.+|++.+++++..... . .++.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 3 266777778888888888888888887766553 33333445777788887777544332 1 3355
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAML 387 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~ 387 (568)
..|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|.. ...+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHH
Confidence 56667778888888888888888764 367778888888888888888877662 3344443 3444
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--cCCHHH
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM--EGLIEE 465 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~ 465 (568)
...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +-....|.-+...+++ -+++.+
T Consensus 1261 ve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 55666666666554322 244456667777777777777777776665432 2223345445555544 344445
Q ss_pred HHHHHHHHHhCCCCC------ChhhHHHHHHHHHccCChHHHH
Q 041458 466 ALEIFVVMEEYDYKP------DVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 466 a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~a~ 502 (568)
+.++|..-.. ++| +...|..++..|.+.|+++.|.
T Consensus 1335 hlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1335 HLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5555543221 111 4556777777777777777766
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-16 Score=147.69 Aligned_cols=284 Identities=14% Similarity=0.157 Sum_probs=126.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 041458 110 KANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQ 189 (568)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (568)
+.|++++|.++++++. ++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999883 3358999999999999999999999653 477789999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 041458 190 FLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF 269 (568)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 269 (568)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77777664 4567888899999999999999888874 367779999999999999999999999976
Q ss_pred CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 041458 270 EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI 349 (568)
Q Consensus 270 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (568)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 368999999999999999999999882 68899999999999999999966554422 233445568
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC-------ChhhHHHHHHHH
Q 041458 350 IARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSS-------PQEFYKYVITSL 422 (568)
Q Consensus 350 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~ 422 (568)
+..|.+.|++++|..+++..+... .-....|.-+..+...-+++...+-++....+-..| +...|..++..|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998765 333444544333333333444333333332221112 356799999999
Q ss_pred HhcCChhHHHHHH
Q 041458 423 CRKGKTYQAFQLL 435 (568)
Q Consensus 423 ~~~g~~~~A~~~~ 435 (568)
.+.++++.|....
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 9999999887743
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-17 Score=152.98 Aligned_cols=265 Identities=13% Similarity=-0.000 Sum_probs=179.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
..+..+...+...|++++|+.+|+.+.+... .+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3455666677777788888888877776542 256677777777777888888888887777652 34667777777778
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL--------------LE-AAYKERGVHAAMKLLDDIIAKGGKPNLVSYNV 243 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (568)
...|++++|.+.++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 8888888888888877765322 22233222 22 2556677778888887777663 235667777
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCC
Q 041458 244 LLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGK 323 (568)
Q Consensus 244 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (568)
+...+.+.|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 77777888888888888877766532 246677777777888888888888887776553 3456677777777888888
Q ss_pred hHHHHHHHHHHHHCCCCC-----------CcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 324 TDHALKVLDEMVKGRFRP-----------SAASYNPIIARLCSEGKVDLVVKCLDQM 369 (568)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 369 (568)
+++|.+.++++.+..... +...|..+..++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888888887776543221 3456666777777777777777766543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-17 Score=151.86 Aligned_cols=279 Identities=11% Similarity=-0.030 Sum_probs=192.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHH
Q 041458 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSL 318 (568)
Q Consensus 239 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (568)
..+..+...+...|++++|..+|+++.+.... +...+..+..++...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 44556666777777777777777777665322 55666667777777777777777777776553 34566677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH-H--HHHhCCCHHH
Q 041458 319 AYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGL-A--MLCGVGKVQE 395 (568)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 395 (568)
...|++++|.+.++++.+.... +...+..+.... |+......+ . .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 7777777777777777665322 222222221000 000000000 1 1444566677
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 396 AFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
|...++++....+. +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 157 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777776655433 56778888889999999999999999988763 33577888999999999999999999999887
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 476 YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-----------NETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 476 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
.... +...+..+...|...|++++|.+.++++.+..... +..+|..+..++...|++++|..++++.+
T Consensus 235 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 INPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5433 67889999999999999999999999998742111 36788899999999999999998887554
Q ss_pred H
Q 041458 545 L 545 (568)
Q Consensus 545 ~ 545 (568)
+
T Consensus 314 ~ 314 (327)
T 3cv0_A 314 E 314 (327)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-16 Score=143.42 Aligned_cols=261 Identities=15% Similarity=0.102 Sum_probs=151.6
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH
Q 041458 247 GLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH 326 (568)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (568)
-....|++..|+..++........+.......+..+|...|++++|...++. . -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3445566666666666554331111122334455666666666666654432 1 24455555666666666666666
Q ss_pred HHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhh
Q 041458 327 ALKVLDEMVKGRFRPS-AASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGN 405 (568)
Q Consensus 327 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 405 (568)
|++.++++...+..|+ ...+..+...+...|++++|++.+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------------------------------- 126 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------------------------------- 126 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------------------------------
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------------------------------
Confidence 6666666655443332 23333344555555555555555543
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 041458 406 KQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTY---SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDV 482 (568)
Q Consensus 406 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 482 (568)
+.+...+..++..+.+.|++++|.+.|+++.+. .|+.... ..++..+...|++++|..+|+++.+.. +.+.
T Consensus 127 ---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~ 200 (291)
T 3mkr_A 127 ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTL 200 (291)
T ss_dssp ---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCH
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcH
Confidence 124455666666777777777777777777664 3443211 112233334477777777777777543 2366
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcCCCCHHHHH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELEL-SAEVLKELQLRQVVSESAVE 555 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~ 555 (568)
..|+.+..++.+.|++++|.+.++++++.. +.+..++..++..+...|+.++ +.++++++.+.+|.++.+..
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 677777777777777777777777777642 3366677777777777777754 46777777777777665544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-15 Score=150.93 Aligned_cols=391 Identities=12% Similarity=-0.004 Sum_probs=245.4
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC--------CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDY--------GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK-----G 198 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~ 198 (568)
....|+.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888999999999999999999887542 12335678999999999999999999999887652 1
Q ss_pred -CC-CCHhhHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH---HHhcCChHHHHHHHHHhhhCCCCC
Q 041458 199 -LV-PNAFTYSFLLEAAYKE--RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTG---LCKEGRTEEAIRFFRDLPSKGFEP 271 (568)
Q Consensus 199 -~~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~~p 271 (568)
.. ....++.....++... +++++|...|++.++... .+...+..+..+ +...++.++|++.+++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 11 1345566555555554 468999999999888732 245555555444 34567888899999888765322
Q ss_pred ChhHHHHHHHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH
Q 041458 272 NVVSYNILLRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYN 347 (568)
Q Consensus 272 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 347 (568)
+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45556555555444 467788999998887664 556778888999999999999999999998876422 444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041458 348 PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK 427 (568)
Q Consensus 348 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (568)
.+...|...+....+ ... ... .......+..++|...|+......+. +...+..+...+...|+
T Consensus 286 ~lg~~y~~~~~~~~~---------~~~-~~~-----~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMN---------LRE-NGM-----YGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHH---------C------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhh---------HHH-HHH-----HHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 555554322111100 000 000 00011122356788888877765443 45668888999999999
Q ss_pred hhHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHH
Q 041458 428 TYQAFQLLYEMTKYGFTPDSY--TYSSLIR-GLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEV 504 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 504 (568)
+++|++.|++..+....|... .+..+.. .....|+.++|+..|++..+.. |+..... +....+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHH
Confidence 999999999998764333221 2233332 2356899999999999988753 3432222 223445566
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 505 FQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
+++.++.+ +.+..+|..+..++...|++++|.+.+++.++.++..+.+.
T Consensus 419 ~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 419 AKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 66666642 55778999999999999999999999999999988866543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=173.51 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=128.3
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHh---CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMED---YGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL 209 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 209 (568)
..+|++||++|++.|++++|.++|++|.+ .|+.||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC------hhHHHHHHHH
Q 041458 210 LEAAYKERG-VHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN------VVSYNILLRS 282 (568)
Q Consensus 210 i~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~ 282 (568)
|.++++.|+ .+.|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999987 578899999999999999999999888655443 444444444 2234433 4555666677
Q ss_pred HHcCC---------CHHHHHHHHHH
Q 041458 283 LCMEG---------RWEEANELLAE 298 (568)
Q Consensus 283 ~~~~g---------~~~~a~~~~~~ 298 (568)
|.+.+ ..++-.++|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 77655 23555555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-15 Score=149.04 Aligned_cols=411 Identities=11% Similarity=-0.058 Sum_probs=247.4
Q ss_pred ChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCC-CHhhHHHHHHHHHhcCC
Q 041458 78 KLNDAFLQLERMVSK-GHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-----G--IIP-DASSYTYLVNCLCKKGN 148 (568)
Q Consensus 78 ~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~g~ 148 (568)
.+......+..-++. +.......|+.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|+
T Consensus 30 ~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~ 109 (472)
T 4g1t_A 30 SLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109 (472)
T ss_dssp CHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC
Confidence 344444444333332 23334567899999999999999999999987652 1 122 35678999999999999
Q ss_pred hhhHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH---HHc
Q 041458 149 VGYAMQLVEKMEDY-----G--YPTNTVTYNSLVRGLCML--GNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAA---YKE 216 (568)
Q Consensus 149 ~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~ 216 (568)
+++|...+++..+. + ......++..+..++.+. +++++|.+.|++..+.... +...+..+..++ ...
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 99999999987642 1 112345666666666554 5799999999999886422 555555555443 456
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 217 RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK----EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
++.++|++.+++.++.. +.+...+..+...+.. .|++++|.+++++...... .+...+..+...|...|++++|
T Consensus 189 ~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHH
Confidence 77889999999988763 3356666666555544 4678899999999877643 3677888999999999999999
Q ss_pred HHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 041458 293 NELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
...+++..+.. +.+..++..+...|...+.... ... .... .......+..+.|...+++....
T Consensus 267 ~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~---------~~~-~~~~------~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 267 IELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM---------NLR-ENGM------YGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh---------hHH-HHHH------HHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999998764 4466777777776643221110 000 0000 00111122345666666666665
Q ss_pred CCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 041458 373 RCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ--EFYKYVIT-SLCRKGKTYQAFQLLYEMTKYGFTPDSYT 449 (568)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 449 (568)
.+............+...|++++|...|++.....+.+.. ..+..+.. .....|+.++|+..|.+..+. .|+...
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~ 407 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSRE 407 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHH
Confidence 5444444444466666677777777777766655433222 11222222 234678889999999888874 455432
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHH
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG-QMPNETTY 520 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~ 520 (568)
.. +....+.++++...+..+. +..+|..+...|...|++++|++.|++.++.| ..|+...|
T Consensus 408 ~~---------~~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 408 KE---------KMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HH---------HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HH---------HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 22 2223445556665554433 67889999999999999999999999998753 23444433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-16 Score=144.31 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=179.3
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAM 153 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 153 (568)
...|++..|+..++.+....+.+.......+.++|...|+++.|+..++.. -.|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 346888888887776544322222345556778888888888888766441 2456667777788888888888888
Q ss_pred HHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 041458 154 QLVEKMEDYGY-PTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 154 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
+.++++...+. |.+...+..+...+...|++++|++.+++ ..+...+..+...+.+.|++++|.+.|+++.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 88888877653 44566677777888888888888888876 346777888888888888888888888888776
Q ss_pred CCCCCHhhH---HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh
Q 041458 233 GGKPNLVSY---NVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV 309 (568)
Q Consensus 233 ~~~~~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (568)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..... +.+..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 3 333211 22334444567888888888888776 33467778888888888888888888888877664 44677
Q ss_pred hHHHHHHHHHhcCChHH-HHHHHHHHHHC
Q 041458 310 TYNILIGSLAYHGKTDH-ALKVLDEMVKG 337 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 337 (568)
++..++..+...|+.++ +.++++++.+.
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 78888888888888765 56777777765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=174.40 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=110.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTK---YGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNA 487 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 487 (568)
-..+|+++|.+|++.|++++|.++|.+|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 47999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041458 488 LLLGLCKSRRT-DLSLEVFQMMIEKGQMPNETTYTILVEGIAHQ 530 (568)
Q Consensus 488 li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 530 (568)
+|+++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999988766553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-15 Score=145.27 Aligned_cols=342 Identities=12% Similarity=-0.004 Sum_probs=166.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh---hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV---GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
+...+.+.|++++|+++|+...+.| +...+..|...|...|+. ++|.+.|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666777777777777776654 333444455555556666 6777777776643 44455555554444
Q ss_pred cC-----ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 041458 181 LG-----NLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVH---AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG 252 (568)
Q Consensus 181 ~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 252 (568)
.+ +.++|.+.|++..+.|. ...+..+...|...+..+ .+.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 56677777777776542 225555555555544322 3334444443333 2344555555665555
Q ss_pred ChH----HHHHHHHHhhhCCCCCChhHHHHHHHHHHcCC---CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhc----
Q 041458 253 RTE----EAIRFFRDLPSKGFEPNVVSYNILLRSLCMEG---RWEEANELLAEMDGGDRSPTIVTYNILIGSLAYH---- 321 (568)
Q Consensus 253 ~~~----~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 321 (568)
.++ ++..+++..... +...+..|...|...| +.++|.+.|++..+.| .++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 333 333333333322 3336666666666666 6677777777766665 34444445555555443
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHH
Q 041458 322 GKTDHALKVLDEMVKGRFRPSAASYNPIIAR-L--CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFA 398 (568)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 398 (568)
++.++|.++|++.. . -+...+..+... + ...+++++|...|++..+.+
T Consensus 231 ~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------------------------- 281 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------------------------- 281 (452)
T ss_dssp CCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-------------------------
T ss_pred CCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-------------------------
Confidence 56667777776665 2 244445555444 2 34556666666666655443
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 041458 399 IIQSLGNKQNSSPQEFYKYVITSLCRKG-----KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM----EGLIEEALEI 469 (568)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 469 (568)
+...+..+...|. .| +.++|++.|++.. . -+...+..|...|.. ..++++|.++
T Consensus 282 ------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 282 ------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp ------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred ------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 2223333333333 23 5555555555444 1 133444444444443 2356666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHCC
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCK----SRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 512 (568)
|++..+.| +......|...|.. ..+.++|..+++...+.|
T Consensus 345 ~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 345 LLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 66665544 23344444444442 335666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-12 Score=131.82 Aligned_cols=461 Identities=10% Similarity=0.012 Sum_probs=297.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---hhhHHH
Q 041458 78 KLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN---VGYAMQ 154 (568)
Q Consensus 78 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~ 154 (568)
...+.+..|++.+..+ +.|...|..++..+.+.+.++.+..+|+.+...- +.....|...+..-.+.++ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666777776664 4699999999999999999999999999999863 4467789988988888888 999999
Q ss_pred HHHHHHhCC-CCCcHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHH--------
Q 041458 155 LVEKMEDYG-YPTNTVTYNSLVRGLCMLGNL--------NQSLQFLDRLIQ-KGL-VPN-AFTYSFLLEAAY-------- 214 (568)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~li~~~~-------- 214 (568)
+|++..... .+|++..|...+....+.++. +.+.++|+..+. .|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998763 147888999988877766654 334577777654 365 453 467777776543
Q ss_pred -HcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHH
Q 041458 215 -KERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEAN 293 (568)
Q Consensus 215 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 293 (568)
..++++.+.++|++.+......-..+|......--..+. ..+.+++.+. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHH
Confidence 234577888888888753211112334333222111111 1122221110 01222233
Q ss_pred HHHHHhc------cCCCC-----------c--C------HhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCC
Q 041458 294 ELLAEMD------GGDRS-----------P--T------IVTYNILIGSLAYHG-------KTDHALKVLDEMVKGRFRP 341 (568)
Q Consensus 294 ~~~~~~~------~~~~~-----------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~ 341 (568)
..+.++. ...++ | + ...|...+..--..+ ..+.+..+|++.+... +-
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CC
Confidence 3332211 00000 1 0 123444443322222 1234556677776643 23
Q ss_pred CcccHHHHHHHHHhcCCHHHHH-HHHHHHhhCCCCCChhhHH-HHHHHHhCCCHHHHHHHHHHHhhCCC---------CC
Q 041458 342 SAASYNPIIARLCSEGKVDLVV-KCLDQMFHRRCKPNEGTYN-GLAMLCGVGKVQEAFAIIQSLGNKQN---------SS 410 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 410 (568)
....|...+..+...|+.++|. +++++.....+ .+...+. .+....+.|+++.|..+|+.+..... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 6667777777777788888886 88888876533 2232232 36666778888888888888765310 12
Q ss_pred ------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCC
Q 041458 411 ------------PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME-GLIEEALEIFVVMEEYD 477 (568)
Q Consensus 411 ------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~ 477 (568)
....|...+....+.|..+.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 12368888888888899999999999998751112334444333333344 4589999999998865
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHH
Q 041458 478 YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP--NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVE 555 (568)
Q Consensus 478 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 555 (568)
.+-+...|...++.....|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+..+.++ .+.
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~ 578 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLE 578 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHH
Confidence 23366777888888888999999999999999863222 346788888888889999999999999999998764 446
Q ss_pred HHHHhhhhcCC
Q 041458 556 RLVMQYDFEGI 566 (568)
Q Consensus 556 ~l~~~~~~~g~ 566 (568)
.++..|...+.
T Consensus 579 ~f~~ry~~~~~ 589 (679)
T 4e6h_A 579 EFTNKYKVLDV 589 (679)
T ss_dssp HHHHHTCBTTB
T ss_pred HHHHHhcCCcc
Confidence 66777665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-14 Score=131.64 Aligned_cols=239 Identities=10% Similarity=0.028 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC----cccH
Q 041458 273 VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR--PS----AASY 346 (568)
Q Consensus 273 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~ 346 (568)
...+..+...+...|++++|...+++..+.. .+..++..+...+...|++++|.+.+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666666777777777777777666554 55666666667777777777777777666553211 01 3455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041458 347 NPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKG 426 (568)
Q Consensus 347 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 426 (568)
..+...+...|++++|...++++.... +. ...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~---------~~~~~~~~ 119 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH----------------------------------RT---------ADILTKLR 119 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------CC---------HHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC----------------------------------ch---------hHHHHHHh
Confidence 555556666666666666666555432 11 12345556
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQ 506 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 506 (568)
++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...|..+...|...|++++|.+.++
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6777777777776642 123456777777778888888888888877765433 66777788888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCHHHHHHHHH
Q 041458 507 MMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ------VVSESAVERLVM 559 (568)
Q Consensus 507 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 559 (568)
++.+.. +.+...|..+..++...|++++|.+.++++.+.. +.+......+.+
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 887752 3457777778888888888888888888888777 655555554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-14 Score=127.87 Aligned_cols=225 Identities=12% Similarity=0.101 Sum_probs=149.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCc----HHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGY--PTN----TVTY 171 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 171 (568)
...+..+...+...|++++|+..|+.+.+.. .+..++..+..++...|++++|++.+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456677777888888888888888887766 5677777888888888888888888877765321 011 4677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 041458 172 NSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251 (568)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (568)
..+...+...|++++|.+.|++..+. .|+. ..+.+.|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 77777788888888888888877764 3332 33555566777777777766652 22445566666667777
Q ss_pred CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 252 GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVL 331 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (568)
|++++|...|++..+.... +...+..+..+|...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777776654322 45566666666666777777777666665543 334556666666666666666666666
Q ss_pred HHHHH
Q 041458 332 DEMVK 336 (568)
Q Consensus 332 ~~~~~ 336 (568)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-14 Score=140.23 Aligned_cols=375 Identities=13% Similarity=0.022 Sum_probs=229.4
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKM---KKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG- 147 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 147 (568)
.+.+.|++++|...|++..+.| +...+..+...|...|+. ++|+++|++..+. ++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 3457899999999999988765 334555666677778888 8999999998864 5666777777555555
Q ss_pred ----ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 041458 148 ----NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLN---QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVH 220 (568)
Q Consensus 148 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 220 (568)
++++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 77899999999998763 347778888888766543 4555555555444 4566777778888877555
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcC----CCHHHHH
Q 041458 221 AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG---RTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCME----GRWEEAN 293 (568)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~ 293 (568)
++......+...-...+...+..+...|.+.| +.++|++.|++..+.|.. +...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 44444333333222234458888999999999 999999999999888643 555556677777654 7999999
Q ss_pred HHHHHhccCCCCcCHhhHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-----CHHHHHHH
Q 041458 294 ELLAEMDGGDRSPTIVTYNILIGS-L--AYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG-----KVDLVVKC 365 (568)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~ 365 (568)
.+|++.. .| +...+..+... + ...++.++|.+.|++..+.| +...+..+...|. .| ++++|...
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999988 33 56677777777 4 46899999999999999876 5566666666665 44 67777777
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHC
Q 041458 366 LDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCR----KGKTYQAFQLLYEMTKY 441 (568)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 441 (568)
|++.. .+ +...+..+...|.. ..+.++|...|++..+.
T Consensus 310 ~~~Aa-~g-------------------------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 310 FEKAV-GR-------------------------------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHTTT-TT-------------------------------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHh-CC-------------------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 76655 21 22333333433433 23677777777777665
Q ss_pred CCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 442 GFTPDSYTYSSLIRGLCM----EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 442 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
|. ......|...|.. ..+.++|..+|+...+.|.. +.......+......++..+|.++.++..+
T Consensus 352 g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 352 GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 42 3344555555543 45777888888777766533 222222222222223345556666555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.4e-14 Score=127.24 Aligned_cols=245 Identities=14% Similarity=0.086 Sum_probs=148.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHhC
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEG---TYNGLAMLCGV 390 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 390 (568)
....+...|++++|+..|+++.+.... +...+..+...+...|++++|+..++++......++.. .+.....+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334444444444444444444443211 22344444444444444444444444444422111110 11123344444
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
|++++|...|++..+..+. +...|..+...+...|++++|++.+++..+.. +.+...+..+...+...+++++|.+.|
T Consensus 88 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554443332 44567788888888888888888888887652 224566666663445556999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChhHHHHHH
Q 041458 471 VVMEEYDYKPDVDNFNALLLGLCKSRR---TDLSLEVFQMMIEKG-QMPN------ETTYTILVEGIAHQDELELSAEVL 540 (568)
Q Consensus 471 ~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~~~a~~~~ 540 (568)
+++.+.... +...+..+...+...|+ .++|...++++.+.. -.|+ ..+|..+...|...|++++|.+++
T Consensus 166 ~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988875433 56777778888888887 888888888887631 1233 257777888889999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHhhh
Q 041458 541 KELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 541 ~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
+++++.++.++.+...+.....
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC----
T ss_pred HHHHhcCccHHHHHHHhhhhhc
Confidence 9999999998888777655443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-14 Score=124.74 Aligned_cols=198 Identities=17% Similarity=0.070 Sum_probs=120.0
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHH
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLV 175 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 175 (568)
++...+..+...+.+.|++++|+..|+.+.+..+ .+...+..+..++.+.|++++|+..|++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4556667777777777777778777777776642 256677777777777777777777777777653 34566777777
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 041458 176 RGLCML-----------GNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVL 244 (568)
Q Consensus 176 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (568)
.++.+. |++++|...|++..+... .+...+..+...+...|++++|...|++.++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 666666666666665432 245556666666666666666666666666654 455666666
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 245 LTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
..+|...|++++|+..|++..+.... +...+..+...+...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666666554221 4455556666666666666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-14 Score=123.52 Aligned_cols=197 Identities=17% Similarity=0.044 Sum_probs=103.6
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041458 131 PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLL 210 (568)
Q Consensus 131 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 210 (568)
++...+..+...+.+.|++++|+..|++..+.. |.+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 345556666666666677777777776666542 3456666666666666677777776666666553 22455566666
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHH
Q 041458 211 EAAYKE-----------RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNIL 279 (568)
Q Consensus 211 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 279 (568)
..+... |++++|...|++.++.. +.+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666665 55555555555555542 1234445555555555555555555555555443 344555555
Q ss_pred HHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 280 LRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 280 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
..+|...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555554432 23444455555555555555555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-12 Score=119.05 Aligned_cols=224 Identities=13% Similarity=-0.031 Sum_probs=159.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGYAMQLVEKMEDYGYPTNTVTYN 172 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (568)
+..++..+...+...|++++|++.|++..+. .+..++..+...|.. .+++++|.+.|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566777777777888888888888887773 255667777777777 788888888888877764 667777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 041458 173 SLVRGLCM----LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK----ERGVHAAMKLLDDIIAKGGKPNLVSYNVL 244 (568)
Q Consensus 173 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (568)
.+...|.. .+++++|.+.|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777764 66677777777777 777777777777777764 45556666
Q ss_pred HHHHHh----cCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHH
Q 041458 245 LTGLCK----EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIG 316 (568)
Q Consensus 245 l~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (568)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 777777777777766653 44566666667777 777777777777766654 2555666666
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 041458 317 SLAY----HGKTDHALKVLDEMVKGR 338 (568)
Q Consensus 317 ~~~~----~g~~~~a~~~~~~~~~~~ 338 (568)
.|.+ .++.++|.+.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 677777777777666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-12 Score=126.92 Aligned_cols=426 Identities=10% Similarity=0.021 Sum_probs=265.8
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCh
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANK---MKKAIKVMEMMVSSGI-IPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 149 (568)
.+.+.+..+..+|++++.. .+.....|...+..-.+.++ ++.+..+|++...... .|++..|...+....+.++.
T Consensus 77 ~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~ 155 (679)
T 4e6h_A 77 VSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDI 155 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCS
T ss_pred HhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccc
Confidence 4568999999999999987 56688889999998888898 9999999999998641 37888999988877666654
Q ss_pred --------hhHHHHHHHHHh-CCC-CC-cHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 041458 150 --------GYAMQLVEKMED-YGY-PT-NTVTYNSLVRGLCM---------LGNLNQSLQFLDRLIQKGLVPNAFTYSFL 209 (568)
Q Consensus 150 --------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 209 (568)
+...++|+.... .|. .+ +...|...+..... .++.+.+..+|++.+......-..+|...
T Consensus 156 ~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y 235 (679)
T 4e6h_A 156 ITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRY 235 (679)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 334578887654 465 44 45788888876543 34567889999998853222122334332
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh------CCCC-----------C-
Q 041458 210 LEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS------KGFE-----------P- 271 (568)
Q Consensus 210 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~-----------p- 271 (568)
...-...+. ..+.+++.+.. .+++.|...+.++.. ..++ |
T Consensus 236 ~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~ 293 (679)
T 4e6h_A 236 TQWEQDVNQ-LTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 293 (679)
T ss_dssp HHHHHHHCT-TTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCC
T ss_pred HHHHHhcCc-chHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCC
Confidence 222111111 11222221110 122222333322110 0000 1
Q ss_pred -C------hhHHHHHHHHHHcCC-------CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 041458 272 -N------VVSYNILLRSLCMEG-------RWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHAL-KVLDEMVK 336 (568)
Q Consensus 272 -~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 336 (568)
+ ...|...+..--..+ ..+.+..+|++.... ++.+...|...+..+...|+.++|. ++|++...
T Consensus 294 ~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 294 PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 0 123444443322222 123455667776654 2456778888888888888888886 88888876
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------CCC------------hhhHHH-HHHHHhCCCHH
Q 041458 337 GRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRC---------KPN------------EGTYNG-LAMLCGVGKVQ 394 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~-~~~~~~~~~~~ 394 (568)
.. +.+...|-..+...-+.|+++.|.++|++++.... .|. ...|.. +....+.|..+
T Consensus 373 ~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 CI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 42 33555566677777788888888888888876410 121 112333 44445568888
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 395 EAFAIIQSLGNKQNSSPQEFYKYVITSLCRK-GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVM 473 (568)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 473 (568)
.|..+|....+..+......|...+..-.+. ++.+.|.++|+..++. ..-+...|...+......|+.+.|..+|++.
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999998887651111223343333333343 4588999999988875 3335566677788777889999999999988
Q ss_pred HhCCCCC--ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 474 EEYDYKP--DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 474 ~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
......+ ....|...+..-.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 8654321 3467888888888889999999999999885 45444444444444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-14 Score=128.86 Aligned_cols=249 Identities=12% Similarity=-0.005 Sum_probs=168.7
Q ss_pred hhccCChHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 73 RHRDHKLNDAFLQLERMVSKGH---KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
....|++++|+..|+++++... +.+...+..+...+...|++++|+..|+.+.+... .+..+|..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH
Confidence 3457899999999999988632 22466788888999999999999999999888653 3678888888899999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
++|++.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999888753 346778888888888999999999999888875 344444444445556667888888888777
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCc
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEP---NVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSP 306 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 306 (568)
.... +++...+. ++..+...++.++|.+.++......... +...+..+...|...|++++|...|++..... |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 6652 22333333 5556666777777777777765542110 13455666666666666666666666665542 2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVL 331 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (568)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 11 222233444555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=131.91 Aligned_cols=248 Identities=9% Similarity=0.020 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGK-TDHALKVLDEMVKGRFRPSAASYNPIIAR 352 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 352 (568)
..|..+...+.+.|++++|+..++++.... +-+...|+.+..++...|+ +++|+..|+++++.... +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345555556666666666666666665543 3345566666666666664 66666666666654432 44555556666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 041458 353 LCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAF 432 (568)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 432 (568)
+...|++++|+..+++++... +. +...|..+..++.+.|++++|+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld----------------------------------P~-~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD----------------------------------AK-NYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC----------------------------------TT-CHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHccCHHHHHHHHHHHHHhC----------------------------------cc-CHHHHHHHHHHHHHcCChHHHH
Confidence 666666666666666555442 22 5566777777777788888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHccC--ChHHHHHH
Q 041458 433 QLLYEMTKYGFTPDSYTYSSLIRGLCM-EGLIEEA-----LEIFVVMEEYDYKPDVDNFNALLLGLCKSR--RTDLSLEV 504 (568)
Q Consensus 433 ~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~ 504 (568)
..++++++.... +...|+.+..++.. .|..++| ++.+++..+.... +...|..+...+...| ++++|.+.
T Consensus 221 ~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 221 QYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHH
Confidence 888887775322 56677777777777 5554666 4777777765444 5667777777777777 57788888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC--------C-hhHHHHHHHHH-HHcCCCCHHHHHHHHHhhh
Q 041458 505 FQMMIEKGQMPNETTYTILVEGIAHQD--------E-LELSAEVLKEL-QLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~~~~~~g--------~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~ 562 (568)
++++ +. .+.+...+..+...|.+.| + .++|.++++++ .+.++........+...+.
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 8776 32 3445677777777777753 2 47788888888 7777776666665555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-12 Score=118.47 Aligned_cols=224 Identities=10% Similarity=-0.037 Sum_probs=188.3
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQFLDRLIQKGLVPNAFTYS 207 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 207 (568)
+..++..+...+...|++++|.+.|++..+. .+..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667788888889999999999999998884 366788888999999 999999999999998875 778888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhHHHHH
Q 041458 208 FLLEAAYK----ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK----EGRTEEAIRFFRDLPSKGFEPNVVSYNIL 279 (568)
Q Consensus 208 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 279 (568)
.+...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888988 999999999999988874 67788888888888 899999999999988765 56677778
Q ss_pred HHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 041458 280 LRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY----HGKTDHALKVLDEMVKGRFRPSAASYNPIIA 351 (568)
Q Consensus 280 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 351 (568)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 899999999999888765 56778888888888 899999999999988864 3566777777
Q ss_pred HHHh----cCCHHHHHHHHHHHhhCC
Q 041458 352 RLCS----EGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 352 ~~~~----~~~~~~a~~~~~~~~~~~ 373 (568)
.|.+ .+++++|.+.+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888899998888887764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-13 Score=121.27 Aligned_cols=210 Identities=14% Similarity=0.006 Sum_probs=150.4
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAML 387 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (568)
...+..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 45566667777777777777777777665432 244556666666666666666666666665432
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 466 (568)
+ .+...+..+...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|
T Consensus 102 --------------------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 102 --------------------S-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp --------------------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------c-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 1 144556667777778888888888888877632334 355677778888888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
.++++++.+.... +...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|+.++|.++++++.+.
T Consensus 161 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888765433 5777888888888888888888888888875 2456777778888888888888888888888888
Q ss_pred CCCCHHHHH
Q 041458 547 QVVSESAVE 555 (568)
Q Consensus 547 ~~~~~~~~~ 555 (568)
.+.++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 887766543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-14 Score=127.36 Aligned_cols=247 Identities=13% Similarity=-0.016 Sum_probs=188.0
Q ss_pred hcCChhHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHH
Q 041458 110 KANKMKKAIKVMEMMVSSGII---PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQ 186 (568)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 186 (568)
..|++++|+..|+.+.+.... .+..++..+...+...|++++|.+.|+++.+.. +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457899999999999886321 145678888899999999999999999998763 4578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 187 SLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 187 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
|.+.|+++.+.. +.+...+..+...+.+.|++++|...|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999998863 3367888899999999999999999999998863 3444444455566777999999999987776
Q ss_pred CCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC---cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 041458 267 KGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRS---PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA 343 (568)
Q Consensus 267 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (568)
.. +++...+ .++..+...++.++|...+++....... .+..++..+...|.+.|++++|...|++..+.. |+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 52 2344444 4777788888889999999988765321 125678888889999999999999999988753 322
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCL 366 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~ 366 (568)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 333455667777777776655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=123.68 Aligned_cols=216 Identities=14% Similarity=0.054 Sum_probs=144.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAML 387 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (568)
...+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------------- 85 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALE---------------- 85 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------
Confidence 34444555555555666666666655554322 1344444445555555555555555554443
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
..+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 86 ------------------~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 86 ------------------LDS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp ------------------HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred ------------------cCC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 322 245667777888888899999999998888753 335677888888899999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
++++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+..
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999988865433 67788889999999999999999999988752 4467888889999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhh
Q 041458 548 VVSESAVERLVMQYD 562 (568)
Q Consensus 548 ~~~~~~~~~l~~~~~ 562 (568)
+.+......+.....
T Consensus 224 p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 224 PDHMLALHAKKLLGH 238 (243)
T ss_dssp TTCHHHHHHHTC---
T ss_pred cchHHHHHHHHHHHh
Confidence 988887776655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-13 Score=121.41 Aligned_cols=247 Identities=11% Similarity=0.050 Sum_probs=133.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC--HhhHHHHHHH
Q 041458 240 SYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT--IVTYNILIGS 317 (568)
Q Consensus 240 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 317 (568)
.+......+...|++++|+..|++..+.... +...+..+..+|...|++++|...+++.......++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3344455556666666666666666554221 333555556666666666666666666555221111 1225555556
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHH
Q 041458 318 LAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAF 397 (568)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 397 (568)
+...|++++|.+.|++..+.... +...+..+...+...|++++|+..+++..+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------- 137 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------------------------- 137 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------------------------
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------------------------
Confidence 66666666666666665554321 3345555555555555555555555555443
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 041458 398 AIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL---IEEALEIFVVME 474 (568)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~ 474 (568)
.+. +...|..+...+...+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...++++.
T Consensus 138 ---------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---------TTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---------SCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---------CCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 221 33444444423333347777777777766642 1234555666666666666 666666666665
Q ss_pred hCC-CCCC------hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 475 EYD-YKPD------VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 475 ~~~-~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
+.. -.|+ ...|..+...|...|++++|.+.++++.+.. +.+...+..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 321 1122 2456667777777888888888888877742 224444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-12 Score=116.28 Aligned_cols=211 Identities=9% Similarity=-0.084 Sum_probs=150.0
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM 386 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 386 (568)
+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------ 73 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------------ 73 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------------
Confidence 455666777777777777777777777766432 2445566666666667777766666666654321
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHH
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRK-GKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIE 464 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 464 (568)
.+...+..+...+... |++++|...++++.+.+..|+ ...+..+...+...|+++
T Consensus 74 -----------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 74 -----------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp -----------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 1345566677777788 888888888888776322333 456777888888888888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 465 EALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQM-PNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 465 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
+|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. + .+...+..+...+...|+.+.+..+++.+
T Consensus 131 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888888765433 57778888888888888888888888887753 3 46677777777778888888888888888
Q ss_pred HHcCCCCHHHHH
Q 041458 544 QLRQVVSESAVE 555 (568)
Q Consensus 544 ~~~~~~~~~~~~ 555 (568)
.+..+.++....
T Consensus 209 ~~~~p~~~~~~~ 220 (225)
T 2vq2_A 209 QANFPYSEELQT 220 (225)
T ss_dssp HHHCTTCHHHHH
T ss_pred HHhCCCCHHHHH
Confidence 888877766544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-13 Score=126.04 Aligned_cols=249 Identities=11% Similarity=0.088 Sum_probs=198.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-hhhHHHHHHHHHhCCCCCcHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN-VGYAMQLVEKMEDYGYPTNTVTYNSLV 175 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li 175 (568)
+...|..+...+.+.|++++|++.++.+++... -+..+|+.+..++...|+ +++|++.|+++.+.. +.+..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 355677788888899999999999999998753 267889999999999996 999999999998864 45788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCh
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK-EGRT 254 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~ 254 (568)
.++...|++++|+..|+++++... -+...|..+..++.+.|++++|+..|+++++... .+...|+.+..++.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999998753 3788899999999999999999999999998743 377889999988888 6665
Q ss_pred HHH-----HHHHHHhhhCCCCCChhHHHHHHHHHHcCC--CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC-----
Q 041458 255 EEA-----IRFFRDLPSKGFEPNVVSYNILLRSLCMEG--RWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG----- 322 (568)
Q Consensus 255 ~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 322 (568)
++| +..|++....... +...|+.+...+...| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 777 5888888776333 5678888888888888 689999999888 332 556778888888888864
Q ss_pred ----ChHHHHHHHHHH-HHCCCCCCcccHHHHHHHH
Q 041458 323 ----KTDHALKVLDEM-VKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 323 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~ 353 (568)
..++|+++|+++ .+.+. .....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 258899999998 55432 1334455454443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-12 Score=117.81 Aligned_cols=201 Identities=12% Similarity=-0.004 Sum_probs=144.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRG 177 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 177 (568)
...+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567778888888999999999999888764 2366778888888888888888888888887653 3467778888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887632233 44566667777777777777777777777653 2345666667777777777777
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccC
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGG 302 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 302 (568)
|...++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777665422 34555666666667777777777777766554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-12 Score=114.27 Aligned_cols=202 Identities=13% Similarity=0.049 Sum_probs=125.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...+..+...+...|++++|++.|+.+.+... .+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 455566677777777777777777777766532 245666677777777777777777777776542 335666677777
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 041458 177 GLCML-GNLNQSLQFLDRLIQKGLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRT 254 (568)
Q Consensus 177 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 254 (568)
.+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 77777777777776522222 24555666666666666777766666666552 22455566666666666666
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 041458 255 EEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 301 (568)
++|...++++.+.....+...+..+...+...|+.+++..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666655542212444555555555666666666666665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-13 Score=121.33 Aligned_cols=197 Identities=13% Similarity=0.134 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLC 179 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 179 (568)
.|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 344444444555555555555555544321 234444445555555555555555555544431 224444555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 259 (568)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 1234444444444555555555555555544431 1234444444445555555555555
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 041458 260 FFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301 (568)
Q Consensus 260 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 301 (568)
.|+++.+... .+..++..+..+|...|++++|...++++.+
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5554443311 1333444444444444555555444444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-11 Score=113.86 Aligned_cols=187 Identities=12% Similarity=-0.015 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhhC-CCCCChhhHH-HHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041458 360 DLVVKCLDQMFHR-RCKPNEGTYN-GLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYE 437 (568)
Q Consensus 360 ~~a~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 437 (568)
++|..+|++.+.. .+. +...+. .+..+...|++++|..+|+++.+..+......|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555555555542 211 111222 2444455555555666665555533221112677777777778888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCC
Q 041458 438 MTKYGFTPDSYTYSSLIRGLC-MEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG-QMP 515 (568)
Q Consensus 438 ~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p 515 (568)
..+... ++...|...+.... ..|++++|.++|+...+..+. +...|..++..+.+.|++++|..+|++++... +.|
T Consensus 160 a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 776532 23444443333322 268888888888887754333 66778888888888888888888888888752 344
Q ss_pred --CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 516 --NETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 516 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
....|..++....+.|+.+.|..+++++.+..+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 4567777777778888888888888888887776
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-13 Score=130.35 Aligned_cols=281 Identities=12% Similarity=0.062 Sum_probs=163.3
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----hhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CCC-c
Q 041458 236 PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN----VVSYNILLRSLCMEGRWEEANELLAEMDGG----DRS-P 306 (568)
Q Consensus 236 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~ 306 (568)
.....+......+...|++++|...|+++.+.... + ...+..+...|...|++++|...+++.... +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45556677788889999999999999998876322 2 356778888899999999999999886432 211 2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCC--------------------HHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR-PS----AASYNPIIARLCSEGK--------------------VDL 361 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~--------------------~~~ 361 (568)
...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456777888889999999999998887753111 11 2356666777777777 666
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 362 VVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY 441 (568)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 441 (568)
|...+.+.... +.... ........+..+...+...|++++|...+++..+.
T Consensus 166 A~~~~~~al~~---------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 166 AVDFYEENLSL---------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHHHHHH---------------------------HHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------------------HHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666655432 11100 00001123444555555556666666555554432
Q ss_pred CC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 442 GF-TPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKP-DVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 442 ~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.. .++ ..++..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 011 124555555556666666666666555421 1000 0334555555566666666666666555442
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 512 ----GQMP-NETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 512 ----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
+..+ ...++..+...+...|++++|.+++++..+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1000 1344555555566666666666666655443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-13 Score=128.66 Aligned_cols=272 Identities=14% Similarity=0.079 Sum_probs=189.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCcHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDA----SSYTYLVNCLCKKGNVGYAMQLVEKMEDY----G-YPTNTVT 170 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~ 170 (568)
.+..+...+...|++++|+..|+++.+.+.. +. .++..+...|...|++++|.+.+++..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445667778889999999999988876422 33 46777888888899999999988877642 1 1224567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHhhHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 041458 171 YNSLVRGLCMLGNLNQSLQFLDRLIQK----G-LVPNAFTYSFLLEAAYKERG-----------------VHAAMKLLDD 228 (568)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~ 228 (568)
+..+...|...|++++|.+.+++..+. + ......++..+...+...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888889999999999988887653 1 11134467777788888888 8888888877
Q ss_pred HHHc----CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----hhHHHHHHHHHHcCCCHHHHHHHHHH
Q 041458 229 IIAK----GG-KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE-PN----VVSYNILLRSLCMEGRWEEANELLAE 298 (568)
Q Consensus 229 ~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 298 (568)
..+. +. ......+..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6543 11 112346777788888899999999888887653111 11 23677788888888999988888887
Q ss_pred hccCCC-----CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 299 MDGGDR-----SPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-----RPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 299 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
...... .....++..+...|...|++++|...+++..+... .....++..+...|.+.|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 654310 01245677788888888888888888887765311 11123566667777788888888887777
Q ss_pred HhhC
Q 041458 369 MFHR 372 (568)
Q Consensus 369 ~~~~ 372 (568)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=126.56 Aligned_cols=276 Identities=13% Similarity=0.104 Sum_probs=187.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD----ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYPT 166 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~ 166 (568)
......+......+...|++++|+..|+.+.+.+.. + ..++..+...+...|++++|...+++..+. +.+|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345556667778888889999999999988876422 3 246777888888899999999888876532 2111
Q ss_pred -cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHHcCC--------------------HH
Q 041458 167 -NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPN----AFTYSFLLEAAYKERG--------------------VH 220 (568)
Q Consensus 167 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~ 220 (568)
...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 255677888888889999999988888765310 012 3467777778888888 88
Q ss_pred HHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----hhHHHHHHHHHHcCCCHH
Q 041458 221 AAMKLLDDIIAK----GGK-PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE-PN----VVSYNILLRSLCMEGRWE 290 (568)
Q Consensus 221 ~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~ 290 (568)
+|.+.+++.... +.. ....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888776543 111 12345777778888888888888888877543110 11 236777778888888888
Q ss_pred HHHHHHHHhccC----CCCc-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCHH
Q 041458 291 EANELLAEMDGG----DRSP-TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR-PS----AASYNPIIARLCSEGKVD 360 (568)
Q Consensus 291 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~ 360 (568)
+|...+++.... +..+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888888776532 1111 1456677778888888888888888776642111 01 345556666777777777
Q ss_pred HHHHHHHHHhh
Q 041458 361 LVVKCLDQMFH 371 (568)
Q Consensus 361 ~a~~~~~~~~~ 371 (568)
+|...+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-11 Score=109.50 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------hcCCh-------hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 115 KKAIKVMEMMVSSGIIPDASSYTYLVNCLC-------KKGNV-------GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 115 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
++|..+|+++.+.. +.+...|..++..+. +.|++ ++|+.+|++..+.-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 235667777766654 34665 7788888887763123356678888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-Hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-hcCChHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPN-AF-TYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLC-KEGRTEEA 257 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~A 257 (568)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.++... .+...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888764 333 33 677777777778888888888888776532 23444443333222 25788888
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC-CCc--CHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 041458 258 IRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGD-RSP--TIVTYNILIGSLAYHGKTDHALKVLDEM 334 (568)
Q Consensus 258 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (568)
.++|+...+... -+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888887766522 256677777777888888888888888877652 233 3557777777777788888888888877
Q ss_pred HHC
Q 041458 335 VKG 337 (568)
Q Consensus 335 ~~~ 337 (568)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=126.84 Aligned_cols=98 Identities=20% Similarity=0.143 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCH
Q 041458 168 TVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA----FTYSFLLEAAYKERGVHAAMKLLDDIIAK----GG-KPNL 238 (568)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 238 (568)
...+..+...+...|++++|.+.|+++.+.+.. +. ..+..+...+...|++++|...+++.... +. +...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344555666777777777777777777765322 22 35666666777777777777777766543 11 1123
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 239 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
..+..+...|...|++++|...+++..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455556666666666666666665543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=121.38 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=178.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCC-CcHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD----ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYP-TNTVT 170 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~ 170 (568)
.+......+...|++++|+..|+++.+.... + ...+..+...+...|++++|.+.+++..+. +.+ ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444566677888888888888887775322 2 346667777888888888888887776432 111 12556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHHcCC--------------------HHHHHHH
Q 041458 171 YNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPN----AFTYSFLLEAAYKERG--------------------VHAAMKL 225 (568)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 225 (568)
+..+...|...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77778888888888888888887654310 112 2366677777777888 7888887
Q ss_pred HHHHHHc----CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC-----CCChhHHHHHHHHHHcCCCHHHHHHH
Q 041458 226 LDDIIAK----GGK-PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF-----EPNVVSYNILLRSLCMEGRWEEANEL 295 (568)
Q Consensus 226 ~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~ 295 (568)
+++.... +.. .....+..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776542 111 1234567777788888888888888887654310 01123667777788888888888888
Q ss_pred HHHhccCC----CC-cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhcCCHHHHHHH
Q 041458 296 LAEMDGGD----RS-PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-----RPSAASYNPIIARLCSEGKVDLVVKC 365 (568)
Q Consensus 296 ~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~ 365 (568)
+++..... .. ....++..+...+...|++++|...+++..+... .....++..+...+.+.|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 87765321 01 1145667777788888888888888877654211 11123556667777777888888877
Q ss_pred HHHHhhC
Q 041458 366 LDQMFHR 372 (568)
Q Consensus 366 ~~~~~~~ 372 (568)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=121.63 Aligned_cols=280 Identities=13% Similarity=0.063 Sum_probs=191.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----hhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CC-CcCHh
Q 041458 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN----VVSYNILLRSLCMEGRWEEANELLAEMDGG----DR-SPTIV 309 (568)
Q Consensus 239 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 309 (568)
..+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555667778899999999999988776322 2 356778888888999999999998876432 11 12245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCC--------------------HHHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFR-PS----AASYNPIIARLCSEGK--------------------VDLVVK 364 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~--------------------~~~a~~ 364 (568)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777888888888999888888887653111 11 2255566666666676 555555
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-
Q 041458 365 CLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF- 443 (568)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 443 (568)
.+++... +...... .......+..+...+...|++++|.+.+++..+...
T Consensus 165 ~~~~a~~---------------------------~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 165 LYEENLS---------------------------LVTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHH---------------------------HHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------------HHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5544322 1111110 011224577778888889999999999988764311
Q ss_pred CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHC---
Q 041458 444 TPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKP-DVDNFNALLLGLCKSRRTDLSLEVFQMMIEK--- 511 (568)
Q Consensus 444 ~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 511 (568)
.++ ..++..+...+...|++++|.+++++..+. +..+ ...++..+...|...|++++|.+.++++.+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 011 236788888899999999999999887642 1111 1556778888999999999999999988763
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 512 -GQMP-NETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 512 -g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+..+ ...++..+...+...|++++|.+++++..+...
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1111 245777888999999999999999999987654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-11 Score=118.81 Aligned_cols=236 Identities=6% Similarity=-0.058 Sum_probs=151.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccC----CCCc-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-----CcccHH
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGG----DRSP-TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR-P-----SAASYN 347 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 347 (568)
....+...|++++|...+++.... +-.+ ...++..+...|...|++++|...+.+..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777788887777776543 1111 2356677777777888888888777776542100 1 123556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041458 348 PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK 427 (568)
Q Consensus 348 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (568)
.+...|...|++++|...+++..+.. .... .......++..+...|...|+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~---------------------------~~~~--~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMA---------------------------EAEK--QPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH---------------------------HHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH---------------------------HHcC--ChHHHHHHHHHHHHHHHHCCC
Confidence 66667777777777777776655321 1000 000011346667778888888
Q ss_pred hhHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHccCC-
Q 041458 428 TYQAFQLLYEMTKY----GF-TPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKPDVDNFNALLLGLCKSRR- 497 (568)
Q Consensus 428 ~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~- 497 (568)
+++|++.+++..+. +. +....++..+...+...|++++|.+.+++..+. +-+.....+..+...+...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 88888888877652 22 223556778888888889998888888877642 111122335667778888888
Q ss_pred --hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 498 --TDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 498 --~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
.++|..++++. +..| ....+..+...|...|++++|.+++++..+.
T Consensus 320 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 320 EAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66777776665 2333 3456677888888999999999999888754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=122.73 Aligned_cols=214 Identities=14% Similarity=0.046 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh-hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 041458 114 MKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV-GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLD 192 (568)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (568)
++++++.++...... ..+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544432 12455555555666666666 66666666655542 2345566666666666666666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--------CChH
Q 041458 193 RLIQKGLVPNAFTYSFLLEAAYKE---------RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE--------GRTE 255 (568)
Q Consensus 193 ~m~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~ 255 (568)
+..+. .|+...+..+...+... |++++|.+.|++.++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66554 34455555555566665 66666666666666552 22455566666666555 6666
Q ss_pred HHHHHHHHhhhCCCC--CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 256 EAIRFFRDLPSKGFE--PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 256 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
+|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|+.++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666554210 255566666666666666666666666665543 33445566666666666666666654433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-11 Score=101.39 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=112.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...|..+...+.+.|++++|++.|++..+..+ -+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 455677777777777777777777777776542 256667777777777777777777777766542 335566666667
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
.+...++++.|.+.+.+..+.. +.+...+..+...+.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777766653 2255666666677777777777777777766652 2355666667777777777777
Q ss_pred HHHHHHHhhhC
Q 041458 257 AIRFFRDLPSK 267 (568)
Q Consensus 257 A~~~~~~~~~~ 267 (568)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777766654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=118.71 Aligned_cols=296 Identities=7% Similarity=-0.040 Sum_probs=170.9
Q ss_pred hhccCChHHHHHHHHHHHhC--CCCCC--HHhHHHHHHH--HHhcCChhHHH-----------HHHHHHHHCCCCCC---
Q 041458 73 RHRDHKLNDAFLQLERMVSK--GHKPD--VVQATNLLYD--LCKANKMKKAI-----------KVMEMMVSSGIIPD--- 132 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~A~-----------~~~~~~~~~~~~~~--- 132 (568)
..+.+++++|..+++++.+. ....| ...|..++.. ..-.++++.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678888888888877553 12123 3333333322 11223334444 56665543210001
Q ss_pred -HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC----
Q 041458 133 -ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYPT-NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VP---- 201 (568)
Q Consensus 133 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~---- 201 (568)
...+......+...|++++|.+.|++..+. +-++ ...++..+...|...|++++|.+.+++..+.-. .+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 011122445666778888888888887653 1111 345677778888888888888888877765310 11
Q ss_pred -CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-C
Q 041458 202 -NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-P----NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK----GF-E 270 (568)
Q Consensus 202 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~ 270 (568)
...+++.+...+...|++++|...|++.++.... + ...++..+..+|...|++++|.+.|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1345666777777788888888877776643110 1 1235666777777788888888777776651 22 2
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CCCcCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-C
Q 041458 271 PNVVSYNILLRSLCMEGRWEEANELLAEMDGG----DRSPTIVTYNILIGSLAYHGK---TDHALKVLDEMVKGRFRP-S 342 (568)
Q Consensus 271 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~ 342 (568)
....++..+...|.+.|++++|...+++.... +-+.....+..+...|...|+ .++|+.++++. +..+ .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 23456677777777778887777777766432 111112234556666667777 55565555544 1111 2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 343 AASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 343 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
...+..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23455566667777777777777766654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=119.92 Aligned_cols=239 Identities=12% Similarity=0.072 Sum_probs=149.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC------C
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSS-------GIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDY------G 163 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~ 163 (568)
+...+..+...+...|++++|..+|+++.+. .......++..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566788888899999999999999988772 22224567788888899999999999999887753 1
Q ss_pred -CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 041458 164 -YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK------GLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAK--- 232 (568)
Q Consensus 164 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 232 (568)
.+....++..+...|...|++++|.+.+++..+. +..| ....+..+...+...|++++|.+.++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2234667888888999999999999999888764 1112 3455677777888888888888888887664
Q ss_pred ---CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-------CCCCChh-HHH------HHHHHHHcCCCHHHHHH
Q 041458 233 ---GGKP-NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-------GFEPNVV-SYN------ILLRSLCMEGRWEEANE 294 (568)
Q Consensus 233 ---~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-~~~------~l~~~~~~~g~~~~a~~ 294 (568)
+..| ...++..+..+|...|++++|.+.|+++.+. ...+... .+. .+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456777778888888888888888877653 1111111 111 11111222233333334
Q ss_pred HHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 295 LLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
.++...... +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444433221 22344555566666666666666666665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.4e-11 Score=100.30 Aligned_cols=164 Identities=19% Similarity=0.148 Sum_probs=69.9
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEA 212 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 212 (568)
..+|..+...|.+.|++++|++.|++..+.. |.+..+|..+..+|.+.|++++|...+....... ..+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 3444444444555555555555555444432 2234444444444444455555544444444332 1133333444444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 213 AYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
+...++++.+...+.+..... +.+...+..+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 444444444444444444331 113333444444444444444444444444333111 233344444444444444444
Q ss_pred HHHHHHhc
Q 041458 293 NELLAEMD 300 (568)
Q Consensus 293 ~~~~~~~~ 300 (568)
.+.|++..
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=121.91 Aligned_cols=215 Identities=12% Similarity=-0.013 Sum_probs=164.6
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNL-NQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLD 227 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 227 (568)
++++++.++..... .+.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666777766554 334677888888888888888 88888888887763 2357788888888888888888888888
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhc---------CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcC--------CCHH
Q 041458 228 DIIAKGGKPNLVSYNVLLTGLCKE---------GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCME--------GRWE 290 (568)
Q Consensus 228 ~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 290 (568)
+.++. .|+...+..+...+... |++++|++.|++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88876 35567788888888888 8888888888888776332 567788888888877 8888
Q ss_pred HHHHHHHHhccCCCC---cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 041458 291 EANELLAEMDGGDRS---PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLD 367 (568)
Q Consensus 291 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 367 (568)
+|...|++..+.. + .+...|..+...|...|++++|.+.|++..+.... +...+..+...+...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887653 3 47778888888888888888888888888775432 45567777778888888888887665
Q ss_pred HHh
Q 041458 368 QMF 370 (568)
Q Consensus 368 ~~~ 370 (568)
++.
T Consensus 317 ~~~ 319 (474)
T 4abn_A 317 KTK 319 (474)
T ss_dssp TCC
T ss_pred ccc
Confidence 553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-11 Score=113.10 Aligned_cols=239 Identities=13% Similarity=0.028 Sum_probs=142.0
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDY-------GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK------G 198 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~ 198 (568)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777888888888888888888887762 23334567778888888888888888888887653 1
Q ss_pred C-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC---
Q 041458 199 L-VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK------GG-KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK--- 267 (568)
Q Consensus 199 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--- 267 (568)
. .....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223456677777778888888888888877654 11 223445667777777888888888888776553
Q ss_pred ---CCCC-ChhHHHHHHHHHHcCCCHHHHHHHHHHhccC-------CCCcCH-------hhHHHHHHHHHhcCChHHHHH
Q 041458 268 ---GFEP-NVVSYNILLRSLCMEGRWEEANELLAEMDGG-------DRSPTI-------VTYNILIGSLAYHGKTDHALK 329 (568)
Q Consensus 268 ---~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 329 (568)
+..| ...++..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 2345666777777778888887777776542 011111 111122222333344444444
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 330 VLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
.+....... +....++..+...|.+.|++++|.+.+++.++
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 454444322 12344556666666677777777776666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-09 Score=103.90 Aligned_cols=269 Identities=12% Similarity=0.038 Sum_probs=171.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCChhhHHHHHHHHHhC----CCC-CcHHHHHH
Q 041458 103 NLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS----SYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYP-TNTVTYNS 173 (568)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 173 (568)
.....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++..+. |.+ ....++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445567888888888888877754222222 4555666777888888888888776542 110 01233566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHhhHH
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQK----GLV--P-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK----PNLVSYN 242 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 242 (568)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... .....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777788888888888888877653 211 2 2345556777788888888888888887764321 1234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCh-hHHH-----HHHHHHHcCCCHHHHHHHHHHhccCCCCcC---HhhHHH
Q 041458 243 VLLTGLCKEGRTEEAIRFFRDLPSKGFEPNV-VSYN-----ILLRSLCMEGRWEEANELLAEMDGGDRSPT---IVTYNI 313 (568)
Q Consensus 243 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ 313 (568)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7777888888888888888877543111111 1121 233446788888888888888765432211 224566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKG----RFRPSA-ASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888888888888888776542 111111 1344455566677777777777766653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-10 Score=105.51 Aligned_cols=264 Identities=14% Similarity=0.064 Sum_probs=191.5
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----hhHHHHHHHH
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVV----QATNLLYDLCKANKMKKAIKVMEMMVSSGI-IPDA----SSYTYLVNCL 143 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~ 143 (568)
+...|++++|...+++.+......+.. .++.+...+...|++++|.+.+++..+... ..+. .++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 346799999999999988765433332 456677788899999999999998765311 1122 2356677788
Q ss_pred HhcCChhhHHHHHHHHHhC----CCC--C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHhhHHHHHHH
Q 041458 144 CKKGNVGYAMQLVEKMEDY----GYP--T-NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP----NAFTYSFLLEA 212 (568)
Q Consensus 144 ~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~ 212 (568)
...|++++|.+.+++..+. +.+ | ....+..+...+...|++++|...+++..+..... ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 9999999999999887642 222 2 34567778889999999999999999987642211 23467778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-hhHH-----HHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhHHHHHHHHH
Q 041458 213 AYKERGVHAAMKLLDDIIAKGGKPNL-VSYN-----VLLTGLCKEGRTEEAIRFFRDLPSKGFEPN---VVSYNILLRSL 283 (568)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 283 (568)
+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 99999999999999998764222111 1222 233457799999999999999876432211 22466778889
Q ss_pred HcCCCHHHHHHHHHHhccC----CCCcCH-hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 284 CMEGRWEEANELLAEMDGG----DRSPTI-VTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
...|++++|...+++.... +..++. ..+..+...+...|+.++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999887532 222222 3666778888999999999999998765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-10 Score=108.62 Aligned_cols=234 Identities=12% Similarity=-0.046 Sum_probs=147.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccCCC-Cc----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CC-CcccHH
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGGDR-SP----TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-----RP-SAASYN 347 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~~ 347 (568)
....+...|++++|...+++...... .+ ...++..+...|...|+++.|...+.+..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445677888888888777654311 01 234566777777888888888877777654210 10 133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041458 348 PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK 427 (568)
Q Consensus 348 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (568)
.+...|...|++++|...+.+..+. .+.... ......++..+...|...|+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~---------------------------~~~~~~--~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALEL---------------------------AMDIQN--DRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---------------------------HHHTTC--HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---------------------------HHHcCC--HHHHHHHHHHHHHHHHHCCC
Confidence 6666777777777777777665432 110000 00012346667777888888
Q ss_pred hhHHHHHHHHHHH-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHccCC-
Q 041458 428 TYQAFQLLYEMTK-----YGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD----YKPDVDNFNALLLGLCKSRR- 497 (568)
Q Consensus 428 ~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~- 497 (568)
+++|++.+++..+ .. +....++..+...+.+.|++++|.+++++..+.. -+.....+..+...+...|+
T Consensus 238 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 8888888887765 32 2225667788888888899999988888876421 11123345556666667777
Q ss_pred --hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 498 --TDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 498 --~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
.++|...+++. +..| ....+..+...|...|++++|.+++++..+
T Consensus 317 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 317 RKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677666652 2223 234566778888889999999998888765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.7e-10 Score=105.70 Aligned_cols=159 Identities=8% Similarity=-0.008 Sum_probs=79.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-CC----CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC-----CC-ChhHHHHHHH
Q 041458 213 AYKERGVHAAMKLLDDIIAKGG-KP----NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF-----EP-NVVSYNILLR 281 (568)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~p-~~~~~~~l~~ 281 (568)
+...|++++|...|++...... .+ ...++..+...|...|++++|...+++..+... .+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3445555555555555443210 01 123444555555555565555555555433100 00 1234555555
Q ss_pred HHHcCCCHHHHHHHHHHhccC----CCC-cCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCcccHHHHHH
Q 041458 282 SLCMEGRWEEANELLAEMDGG----DRS-PTIVTYNILIGSLAYHGKTDHALKVLDEMVK-----GRFRPSAASYNPIIA 351 (568)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~ 351 (568)
.|...|++++|.+.+++..+. +.. ....++..+...|...|++++|.+.+++..+ .... ...++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHH
Confidence 666666666666666554331 101 1123455566666666666666666666554 3222 2444555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 041458 352 RLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~ 372 (568)
.+.+.|++++|...+++..+.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 666666666666666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-10 Score=97.75 Aligned_cols=208 Identities=11% Similarity=-0.014 Sum_probs=152.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH-HHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 342 SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTY-NGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 420 (568)
|+..+......+...|++++|+..|++.++..+.++...+ .....+...|++++|...|++.....+. +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 5567777888889999999999999999887763444333 3467788889999999999988876554 5667888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHH
Q 041458 421 SLCRKGKTYQAFQLLYEMTKYGFTPDS-------YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD---VDNFNALLL 490 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~ 490 (568)
.+...|++++|++.+++..+... .+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 88999999999999998887532 233 34777778888889999999999888865 343 456667777
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
+|...| ..+++++...+ ..+...+.... ....+.+++|..++++..+..+.+..+...+....
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 775443 34455555542 33444444433 33456689999999999999999988877766543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.7e-10 Score=94.18 Aligned_cols=164 Identities=16% Similarity=0.086 Sum_probs=101.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
..+..+...+...|++++|+..++.+.+... .+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3455566666677777777777776665432 245566666667777777777777777666542 33556666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAI 258 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 258 (568)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 67777777777776666542 2355556666666666666666666666666552 224555566666666666666666
Q ss_pred HHHHHhhh
Q 041458 259 RFFRDLPS 266 (568)
Q Consensus 259 ~~~~~~~~ 266 (568)
+.++...+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-10 Score=95.25 Aligned_cols=163 Identities=9% Similarity=0.015 Sum_probs=127.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+...|++++|...++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence 34455556666666666666554332 55667788888888999999999999888753 33567788888889999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
++|.++++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++++
T Consensus 93 ~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 93 DLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988865433 67788888899999999999999999988863 446788888899999999999999999998
Q ss_pred HHcCCCC
Q 041458 544 QLRQVVS 550 (568)
Q Consensus 544 ~~~~~~~ 550 (568)
.+..+.+
T Consensus 171 ~~~~~~~ 177 (186)
T 3as5_A 171 NELDEGA 177 (186)
T ss_dssp HHHHHCC
T ss_pred HHcCCCc
Confidence 8776653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.5e-10 Score=115.04 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=86.0
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEA 212 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 212 (568)
..+|+.|...|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++.++... -+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4455555556666666666666665555532 22455555555556666666666666655555421 134555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 213 AYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
+.+.|++++|++.|++.++.. +-+...|+.+..+|.+.|++++|++.|++..+.... +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555555542 123445555555555555555555555555443211 344455555555555555555
Q ss_pred HHHHHHh
Q 041458 293 NELLAEM 299 (568)
Q Consensus 293 ~~~~~~~ 299 (568)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.1e-10 Score=114.71 Aligned_cols=167 Identities=16% Similarity=0.065 Sum_probs=146.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHH
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLV 175 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 175 (568)
.+..+++.+...+.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|++.|++..+.. +.+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3567899999999999999999999999998753 267889999999999999999999999998863 44688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTE 255 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 255 (568)
.+|.+.|++++|++.|++..+... -+...|..+..++.+.|++++|++.|++.++.. +-+...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999988643 367899999999999999999999999999873 336788999999999999999
Q ss_pred HHHHHHHHhhh
Q 041458 256 EAIRFFRDLPS 266 (568)
Q Consensus 256 ~A~~~~~~~~~ 266 (568)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-09 Score=94.75 Aligned_cols=194 Identities=14% Similarity=0.033 Sum_probs=113.7
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
|+..+......+...|++++|++.|++..+...+++...+..+..++...|++++|.+.|++..+.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 556666677777777777777777777776543256666666777777777777777777777765322 4556666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhHHHHHHH
Q 041458 212 AAYKERGVHAAMKLLDDIIAKGGKPNL-------VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN---VVSYNILLR 281 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 281 (568)
.+...|++++|...+++.++... .+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 77777777777777777766522 233 34555666666667777777777766654 333 344555555
Q ss_pred HHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 282 SLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
+|...| ...++++...+ ..+...+.... ....+.+++|+..+++..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 554332 33334443332 22222332222 22234455666666665553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-08 Score=98.71 Aligned_cols=378 Identities=8% Similarity=-0.044 Sum_probs=218.3
Q ss_pred hcC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hHHH
Q 041458 110 KAN-KMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN-LNQS 187 (568)
Q Consensus 110 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a 187 (568)
+.| +++.|+.+|+.+... -|. |+++.+.++|++.... .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 446 478888888887764 233 8899999999998874 4688899888888877763 4567
Q ss_pred HHHHHHHHHC-CCC-CCHhhHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 188 LQFLDRLIQK-GLV-PNAFTYSFLLEAAY----KERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFF 261 (568)
Q Consensus 188 ~~~~~~m~~~-~~~-~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 261 (568)
..+|+..... |.. .+...|...+..+. ..++.+.+.++|++.+......-...|......- +......+.++.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHH
Confidence 7788877653 433 35667777776543 3466788888888888742111112222222211 111122222222
Q ss_pred HHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC--C-----hHHHHHHHHHH
Q 041458 262 RDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG--K-----TDHALKVLDEM 334 (568)
Q Consensus 262 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~ 334 (568)
.+.. +.+..|..+++++...-...+...|...+..-...+ - .+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 2211 122223333332221000012334544444322211 1 23456677777
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCC------
Q 041458 335 VKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQ------ 407 (568)
Q Consensus 335 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~------ 407 (568)
+... +.+...|...+.-+.+.|+.+.|..++++.+.. |....... ...+...+ +. ++.+.+..
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~~---~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---AV---YGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---HH---HHHHHHHTC-----
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---HH---HHHHHHHHHhhccc
Confidence 6643 234566777777777778888888888888776 33222222 11111111 11 22221110
Q ss_pred ------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCC
Q 041458 408 ------NSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM-EGLIEEALEIFVVMEEYDYKP 480 (568)
Q Consensus 408 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p 480 (568)
.......|...+..+.+.++.+.|..+|++. +. ...+...|...+..-.. .++.+.|..+|+...+.-..
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~- 352 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD- 352 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-
Confidence 0112245777777777788899999999998 32 12234444432222222 34799999999998864322
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
+...|...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.+++++...
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567778888888999999999999972 2578888888877888999999998888874
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-10 Score=104.12 Aligned_cols=226 Identities=15% Similarity=0.055 Sum_probs=156.4
Q ss_pred cCChHHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHhhHHHHHH
Q 041458 76 DHKLNDAFLQLERMVS-------KGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS------GIIP-DASSYTYLVN 141 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~ 141 (568)
.|++++|+..|++.++ ...+.....+..+...+...|++++|+..++++.+. +-.| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4455555555555443 233345677888999999999999999999998764 2122 3557888999
Q ss_pred HHHhcCChhhHHHHHHHHHhC------C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHhhHH
Q 041458 142 CLCKKGNVGYAMQLVEKMEDY------G-YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK------GLVP-NAFTYS 207 (568)
Q Consensus 142 ~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~ 207 (568)
.|...|++++|.+.|++..+. . .+....++..+...|...|++++|.+.+++..+. +..| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999988764 1 1334678889999999999999999999998764 1122 356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC-CHhhHHHHHHHHHhcCC------hHHHHHHHHHhhhCCCCCCh
Q 041458 208 FLLEAAYKERGVHAAMKLLDDIIAK-------GGKP-NLVSYNVLLTGLCKEGR------TEEAIRFFRDLPSKGFEPNV 273 (568)
Q Consensus 208 ~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~ll~~~~~~g~------~~~A~~~~~~~~~~~~~p~~ 273 (568)
.+...+...|++++|...+++.... ...+ ....+..+...+...+. +..+...++..... .....
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHH
Confidence 8899999999999999999998764 1122 22333333333333332 33444444433322 12245
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccC
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGG 302 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 302 (568)
.++..+...|...|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67888999999999999999999987653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4e-10 Score=103.32 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=93.4
Q ss_pred hcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC------C-CCCcHHHHHHHH
Q 041458 110 KANKMKKAIKVMEMMVSS-------GIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDY------G-YPTNTVTYNSLV 175 (568)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li 175 (568)
..|++++|+..|++..+. ..+....++..+...|...|++++|++.+++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665541 11123456667777777777777777777776643 1 122345667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHC------CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHhhH
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQK------GL-VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK------GGKP-NLVSY 241 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 241 (568)
..|...|++++|.+.+++..+. .. .....++..+...+...|++++|...+++.... +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777777776543 10 112445556666666667777777766666553 1111 23455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 242 NVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 242 ~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
..+...|...|++++|...|++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666666666543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.1e-10 Score=101.54 Aligned_cols=141 Identities=10% Similarity=0.027 Sum_probs=78.1
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------
Q 041458 415 YKYVITSLCRK-GKTYQAFQLLYEMTKYGFTP-D----SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDV------ 482 (568)
Q Consensus 415 ~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------ 482 (568)
++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44555666664 77777777776665421100 1 235666677777777777777777777654333221
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE------TTYTILVEGIA--HQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
..|..+..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|.+.++++...++......
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 14556666677777777777777776652 3321 12334445553 34556666666666655544443333
Q ss_pred HHH
Q 041458 555 ERL 557 (568)
Q Consensus 555 ~~l 557 (568)
..+
T Consensus 278 ~~~ 280 (292)
T 1qqe_A 278 NKI 280 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-08 Score=90.09 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
|+..|++..+.+ +++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554433 23344444555556666666666666665544332 1234445555555566666666666666555
Q ss_pred HcCCCC-----CHhhHHHHHHHH--Hh--cCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 041458 231 AKGGKP-----NLVSYNVLLTGL--CK--EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301 (568)
Q Consensus 231 ~~~~~~-----~~~~~~~ll~~~--~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 301 (568)
+. .| +..+...+..++ .. .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 23 122333333331 11 22555666666655443 22322222333355555666666655554433
Q ss_pred CC---------CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 302 GD---------RSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 302 ~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
.. -+.|..+...++......|+ +|.+++.++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 10 02234444344444444444 455555555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5.9e-09 Score=83.26 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.++++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 46677788888999999999999888753 235677888888899999999999999998865433 6778888899999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
..|++++|.++++++.+.. +.+...+..+...+...|++++|.+.++++.+.++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999998752 446788888899999999999999999998887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-08 Score=89.64 Aligned_cols=181 Identities=10% Similarity=0.003 Sum_probs=129.8
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 187 SLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG-KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 187 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777777654 45666667788888899999999999998877654 2366777888889999999999999999987
Q ss_pred hCCCCC-----ChhHHHHHHHH--HHcCC--CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 266 SKGFEP-----NVVSYNILLRS--LCMEG--RWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 266 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
+. .| +..+...++.+ ....| +..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 24555556655 33334 899999999998665 34433444555588899999999999987654
Q ss_pred CC---------CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 041458 337 GR---------FRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRC 374 (568)
Q Consensus 337 ~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 374 (568)
.. -+.++.+...+|......|+ .|.+++.++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 21 02355566455555556676 78888998888753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-10 Score=90.85 Aligned_cols=144 Identities=13% Similarity=-0.014 Sum_probs=116.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT 498 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 498 (568)
..+...|++++|+..+...... .| +...+..+...|...|++++|.+.|++..+..+. +...|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 3445567888888888887653 23 3456778889999999999999999999876554 788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH-HHHHHHHcCCCCHHHHHHHHHhhhhcCCC
Q 041458 499 DLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE-VLKELQLRQVVSESAVERLVMQYDFEGIE 567 (568)
Q Consensus 499 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 567 (568)
++|...|++.++.. +-+..+|..+...+.+.|++++|.+ +++++++..|.++.++......+..+|.+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence 99999999999852 3367888899999999999876655 56999999999999988888888888864
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.7e-08 Score=87.45 Aligned_cols=233 Identities=10% Similarity=-0.014 Sum_probs=163.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHH----HhC---CCH
Q 041458 323 KTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG--KVDLVVKCLDQMFHRRCKPNEGTYNGLAML----CGV---GKV 393 (568)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~ 393 (568)
..++|+++++.++..++. +...|+.--..+...+ +++++++.++.++...+........-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 335666666666654322 3344555555555556 667777777766665544333332221111 223 667
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC------HHH
Q 041458 394 QEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTY--QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL------IEE 465 (568)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 465 (568)
++++..++.+.+.+++ +...|+.-...+.+.|.++ ++++.++++++..+. |...|+.-.....+.|. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 7788888877776555 6778888888888888888 999999999987544 67788877777777776 899
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 466 ALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDL-SLEVFQMMIEKG--QMPNETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 466 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
++++++.+....+. |...|+.+...+.+.|+..+ +..+.+++.+.+ -..+...+..+..++.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999877666 88899988888888887444 556666665532 134778899999999999999999999999
Q ss_pred HHH-cCCCCHHHHHHHHH
Q 041458 543 LQL-RQVVSESAVERLVM 559 (568)
Q Consensus 543 ~~~-~~~~~~~~~~~l~~ 559 (568)
+.+ .++...........
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 987 68876665554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-08 Score=92.75 Aligned_cols=159 Identities=10% Similarity=-0.044 Sum_probs=74.1
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-cHHHHHHHHH
Q 041458 107 DLCKANKMKKAIKVMEMMVSS----GIIPD-ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYPT-NTVTYNSLVR 176 (568)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 176 (568)
.|...|++++|.+.|++..+. |-.++ ..+|+.+..+|.+.|++++|+..+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666665442 11111 345556666666666666666666555432 1000 0234555555
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------hhHHHH
Q 041458 177 GLCML-GNLNQSLQFLDRLIQKGLVP-N----AFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNL------VSYNVL 244 (568)
Q Consensus 177 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 244 (568)
.|... |++++|++.|++..+..... + ..++..+...+.+.|++++|...|++.......... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555544321000 0 123444444455555555555555554443221111 023334
Q ss_pred HHHHHhcCChHHHHHHHHHhh
Q 041458 245 LTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~ 265 (568)
..++...|++++|...|++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444555555555555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-07 Score=90.82 Aligned_cols=84 Identities=8% Similarity=-0.049 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CCC-CCHhhHHHHHHHHH----hcCCh
Q 041458 77 HKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANK-MKKAIKVMEMMVSS-GII-PDASSYTYLVNCLC----KKGNV 149 (568)
Q Consensus 77 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~----~~g~~ 149 (568)
++++.+..+|++.+.. .|++..|...+....+.+. .+....+|+.+... |.. .+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5677888888887774 4577788877777666553 35566777776653 322 24566666665543 23567
Q ss_pred hhHHHHHHHHHhC
Q 041458 150 GYAMQLVEKMEDY 162 (568)
Q Consensus 150 ~~a~~~~~~~~~~ 162 (568)
+.+.++|++....
T Consensus 106 ~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 106 EKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhC
Confidence 7788888887763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-08 Score=84.57 Aligned_cols=176 Identities=13% Similarity=0.042 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----ChhhHHHHH
Q 041458 81 DAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG----NVGYAMQLV 156 (568)
Q Consensus 81 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~ 156 (568)
+|+..|+...+.| +...+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777776653 66777778888888888888888888888764 56677777777766 5 788888888
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHH----cCCHHHHHHHHH
Q 041458 157 EKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQFLDRLIQKGLV-PNAFTYSFLLEAAYK----ERGVHAAMKLLD 227 (568)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 227 (568)
++..+.| +..++..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .++.++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887764 66677777777776 67888888888887765421 015666667777776 667777777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhc-C-----ChHHHHHHHHHhhhCC
Q 041458 228 DIIAKGGKPNLVSYNVLLTGLCKE-G-----RTEEAIRFFRDLPSKG 268 (568)
Q Consensus 228 ~~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~A~~~~~~~~~~~ 268 (568)
+..+. ..+...+..|...|... | +.++|..+|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77665 22344555566666442 2 6777777777766654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-08 Score=88.78 Aligned_cols=65 Identities=6% Similarity=0.012 Sum_probs=51.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCH
Q 041458 486 NALLLGLCKSRRTDLSLEVFQMMIEKGQMPN----ETTYTILVEGIAHQ----------DELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 486 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 551 (568)
..+...|.+.|++++|+..|+++++. .|+ ...+..+..++... |++++|...++++++..+.++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 56678888999999999999998875 333 45677777777765 888999999999999988865
Q ss_pred H
Q 041458 552 S 552 (568)
Q Consensus 552 ~ 552 (568)
.
T Consensus 230 ~ 230 (261)
T 3qky_A 230 L 230 (261)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-08 Score=89.68 Aligned_cols=187 Identities=11% Similarity=0.019 Sum_probs=113.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCcHHH
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD---ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGY--PTNTVT 170 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~ 170 (568)
.+...+..+...+.+.|++++|+..|+.+.+.... + ..++..+..+|.+.|++++|+..|++..+... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45666777788888899999999999998876422 3 56777788888899999999999988887521 123456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 041458 171 YNSLVRGLCM--------LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYN 242 (568)
Q Consensus 171 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (568)
+..+..++.. .|++++|...|+++.+.... +......+. .+..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 7777788888 88899999999888875221 222221110 00000000 011133
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCC--ChhHHHHHHHHHHcC----------CCHHHHHHHHHHhccC
Q 041458 243 VLLTGLCKEGRTEEAIRFFRDLPSKGFEP--NVVSYNILLRSLCME----------GRWEEANELLAEMDGG 302 (568)
Q Consensus 243 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 302 (568)
.+...|.+.|++++|+..|+.+.+..... ....+..+..+|... |++++|...++++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 44555566666666666666655442111 123444455555544 5566666666665543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4e-08 Score=78.25 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
|..+...+...|++++|..+++.+.+.+. .+...+..+...+...|++++|.+.++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44455555566666666666666555432 244455555555555566666666665555432 2344455555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555432 12344444445555555555555555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-08 Score=85.40 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHH----------------HHHHHHhcCChhhHHHHHHHHHhCC
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIP-DASSYTY----------------LVNCLCKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~~~~~~ 163 (568)
+......+...|++++|+..|+...+.. | +...|.. +..+|.+.|++++|+..|++..+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3344455667777778877777777642 2 2233333 4444444444444444444444331
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 164 YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQ 196 (568)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (568)
|.+...+..+..++...|++++|.+.|++..+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22344444444444444444444444444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-08 Score=84.55 Aligned_cols=175 Identities=14% Similarity=0.059 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC----ChHHHHHHH
Q 041458 116 KAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLG----NLNQSLQFL 191 (568)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~ 191 (568)
+|++.|++..+.| ++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45555555556666666666666666665543 44555555555555 4 555666666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHh----cCChHHHHHHHH
Q 041458 192 DRLIQKGLVPNAFTYSFLLEAAYK----ERGVHAAMKLLDDIIAKGGK-PNLVSYNVLLTGLCK----EGRTEEAIRFFR 262 (568)
Q Consensus 192 ~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~A~~~~~ 262 (568)
++..+.| +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .++.++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5555433 34444444444444 44555555555555444221 013444444444444 445555555555
Q ss_pred HhhhCCCCCChhHHHHHHHHHHcC-C-----CHHHHHHHHHHhccC
Q 041458 263 DLPSKGFEPNVVSYNILLRSLCME-G-----RWEEANELLAEMDGG 302 (568)
Q Consensus 263 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 302 (568)
+..+. ..+...+..|...|... | +.++|..+|++..+.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 54443 11223334444444321 1 455555555544443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-07 Score=83.80 Aligned_cols=185 Identities=9% Similarity=-0.000 Sum_probs=113.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh--hhHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPN---EGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ--EFYKYV 418 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 418 (568)
..+..+...+.+.|++++|+..|++++...+... ...+.....+.+.|++++|...|+++.+..+.... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3455566677788888888888888877644322 23344466777778888888888877766554322 123333
Q ss_pred HHHHHh------------------cCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041458 419 ITSLCR------------------KGKTYQAFQLLYEMTKYGFTPDSY-TYSSLIRGLCMEGLIEEALEIFVVMEEYDYK 479 (568)
Q Consensus 419 i~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (568)
..++.. .|+.++|+..|+++++. .|+.. .+...... ..+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH------
Confidence 334433 34455555555555543 22221 11110000 0000000
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 480 PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN----ETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 480 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
......+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...++.+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011134567788999999999999999985 343 2568888999999999999999999999888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-08 Score=100.45 Aligned_cols=156 Identities=7% Similarity=-0.078 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
|++++|...|++..+..+. +...|..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555444433222 34455556666666666666666666665542 123455566666666666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHcC
Q 041458 471 VVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQ---DELELSAEVLKELQLRQ 547 (568)
Q Consensus 471 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 547 (568)
++..+.... +...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++.++.+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 666554322 45566666666666666666666666666541 22455555666666666 66666666666666666
Q ss_pred CCC
Q 041458 548 VVS 550 (568)
Q Consensus 548 ~~~ 550 (568)
+.+
T Consensus 159 p~~ 161 (568)
T 2vsy_A 159 VGA 161 (568)
T ss_dssp CCC
T ss_pred Ccc
Confidence 553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-08 Score=102.10 Aligned_cols=140 Identities=10% Similarity=-0.008 Sum_probs=66.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+...|++++|...|+++.+..+. +...|..+..++...|++++|++.|++..+... -+...+..+..++...|++
T Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 440 VRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCh
Confidence 33444444444444444444443222 334445555555555555555555555554321 1334455555555555555
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN-ETTYTILVEGIAH 529 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 529 (568)
++ .+.|++..+.+.. +...|..+..++.+.|++++|.+.++++.+. .|+ ...+..+..++..
T Consensus 518 ~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 518 DE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp CT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHc
Confidence 55 5555555543322 4445555555555555555555555555442 332 3344444444433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-08 Score=104.49 Aligned_cols=173 Identities=10% Similarity=-0.072 Sum_probs=146.6
Q ss_pred HhCCCHHHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 041458 388 CGVGKVQEAFAIIQSLG--------NKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM 459 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 459 (568)
...|++++|.+.+++.. +..+ .+...+..+...+...|++++|++.|++..+... .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67788999999998887 3322 3556788889999999999999999999998632 267789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041458 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEV 539 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 539 (568)
.|++++|.+.|++..+.... +...|..+..+|.+.|++++ .+.|+++++.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999976544 67889999999999999999 99999999852 44778999999999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 540 LKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 540 ~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
++++++.++....+...+...+...|
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 99999999998888888887775433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-06 Score=79.85 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH----Hhc---CChH
Q 041458 115 KKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG--NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL----CML---GNLN 185 (568)
Q Consensus 115 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 185 (568)
++|+++++.++..++. +..+|+.--..+...| +++++++.++.+.... |.+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4666666666665422 3445666555666666 6677777776666542 33455555544444 333 5666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC------hHHH
Q 041458 186 QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVH--AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGR------TEEA 257 (568)
Q Consensus 186 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~A 257 (568)
+++++++++.+... -+..+|+--.-.+.+.+.++ ++++.++++++.... |...|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 66666666666532 25556665555555666655 666666666665332 55556555555555454 6666
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH-HHHHHHHhccCC--CCcCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 041458 258 IRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE-ANELLAEMDGGD--RSPTIVTYNILIGSLAYHGKTDHALKVLDEM 334 (568)
Q Consensus 258 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (568)
++.++.+....+. |...|+.+-..+.+.|+..+ +..+..++...+ -+.+...+..+...|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666666655333 55666666666666555333 444555444322 1234556666666666667777777777666
Q ss_pred HH
Q 041458 335 VK 336 (568)
Q Consensus 335 ~~ 336 (568)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-08 Score=84.70 Aligned_cols=158 Identities=13% Similarity=0.062 Sum_probs=91.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRG-LCMEGL 462 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~ 462 (568)
...+...|++++|...|++..+..+. +...+..+...+...|++++|+..+++..+. .|+...+..+... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcc
Confidence 44445555555555555554443322 4455666666777777777777777666543 2233222221111 112122
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 041458 463 IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLK 541 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 541 (568)
..+|...+++..+..+. +...+..+...+...|++++|...++++++....+ +...+..+...+...|+.++|...++
T Consensus 90 ~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 23456667766654333 56677777777777777777777777777642211 24566777777777777777777777
Q ss_pred HHHH
Q 041458 542 ELQL 545 (568)
Q Consensus 542 ~~~~ 545 (568)
+.+.
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-07 Score=82.25 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 136 YTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNS----------------LVRGLCMLGNLNQSLQFLDRLIQKGL 199 (568)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~~~ 199 (568)
+......+...|++++|+..|++..+.. |.+...|.. +..+|.+.|++++|...|++..+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3344456677888888888888877642 223444444 4555555555555555555555442
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 041458 200 VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLC 249 (568)
Q Consensus 200 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 249 (568)
+.+...+..+...+...|++++|...|++.++.. +.+...+..+...|.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 1144455555555555555555555555555442 223444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=7e-08 Score=75.89 Aligned_cols=116 Identities=11% Similarity=0.004 Sum_probs=94.7
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 041458 443 FTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYT 521 (568)
Q Consensus 443 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 521 (568)
+.|+ ...+......|.+.|++++|.+.|++..+..+. +...|..+..+|.+.|++++|++.+++.++.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3443 345677788888999999999999888876544 77888888899999999999999999988852 44678888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 522 ILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
.+..++...|++++|.+.+++.++.+|.+..+...+...
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888999999999999999999999999988887777654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.7e-08 Score=81.36 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChHHHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP-DVDNFNALLLGLCKSRRTDLSLEV 504 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 504 (568)
...+|+..+++..+. .| +...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 334577888887775 33 56788888899999999999999999988765443 356788888999999999999999
Q ss_pred HHHHHH
Q 041458 505 FQMMIE 510 (568)
Q Consensus 505 ~~~m~~ 510 (568)
|++.+.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-07 Score=79.98 Aligned_cols=204 Identities=10% Similarity=-0.042 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC-c-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--ccHHH
Q 041458 273 VVSYNILLRSLCMEGRWEEANELLAEMDGGDRS-P-TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA--ASYNP 348 (568)
Q Consensus 273 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 348 (568)
...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667777888888888888887754211 1 1346667777888888888888888887765322111 12333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 041458 349 IIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKT 428 (568)
Q Consensus 349 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 428 (568)
+..++...+.. .+... ......+...|+.++|...|+++.+..+... ..+......
T Consensus 84 ~g~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~-~a~~a~~~l------- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQGF-----------FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ-YTTDATKRL------- 139 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCT-THHHHHHHH-------
T ss_pred HHHHHHhhhhh-----hhhhh-----------hccchhhcCcHHHHHHHHHHHHHHHHCcCCh-hHHHHHHHH-------
Confidence 33333332110 00000 0001122335667777777777766544321 112111000
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCChHHHHHHHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP--DVDNFNALLLGLCKSRRTDLSLEVFQ 506 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~ 506 (568)
..+...+. .....+...+.+.|++++|...|+.+.+..+.. ....+..+..+|.+.|+.++|.+.++
T Consensus 140 ---~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 140 ---VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp ---HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 00000000 011244566667777777777777776532221 12456667777777777777777777
Q ss_pred HHHHC
Q 041458 507 MMIEK 511 (568)
Q Consensus 507 ~m~~~ 511 (568)
.+...
T Consensus 209 ~l~~~ 213 (225)
T 2yhc_A 209 IIAAN 213 (225)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 76664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=88.01 Aligned_cols=199 Identities=10% Similarity=-0.011 Sum_probs=111.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
.|++.+|..++++..+... .. + +...++++.|...|+.+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 5677788888877655311 11 0 11146677777666654 3456667777777777
Q ss_pred HHHHHhC----CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C-CC--CHhhHHHHHHHHHHcCCHHHHHHH
Q 041458 156 VEKMEDY----GYPT-NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG--L-VP--NAFTYSFLLEAAYKERGVHAAMKL 225 (568)
Q Consensus 156 ~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~-~~--~~~~~~~li~~~~~~~~~~~a~~~ 225 (568)
|.+..+. +-+. -..+|+.+...|.+.|++++|...|++..+.- . .+ -..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7766532 1110 13466777777777778877777777665421 0 11 12345555556655 777777776
Q ss_pred HHHHHHcCCCC-----CHhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCC-hhHHHHHHHHHHcCCCHHHHHHH
Q 041458 226 LDDIIAKGGKP-----NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK----GFEPN-VVSYNILLRSLCMEGRWEEANEL 295 (568)
Q Consensus 226 ~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 295 (568)
|++.++..... ...+++.+...|.+.|++++|+..|++.... +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66655431100 1345556666666667777776666665542 11111 12344445555556666666666
Q ss_pred HHHhc
Q 041458 296 LAEMD 300 (568)
Q Consensus 296 ~~~~~ 300 (568)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66655
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=86.91 Aligned_cols=167 Identities=10% Similarity=-0.007 Sum_probs=123.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHH-H
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYN-S 173 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ 173 (568)
+.+...+..+...+.+.|++++|...|+++.+... .+...+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 44566677778888889999999999998887643 266778888888889999999999988887643 3433322 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcC
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-PNLVSYNVLLTGLCKEG 252 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g 252 (568)
....+.+.++.++|.+.+++..+.. +.+...+..+...+...|++++|...|+++++.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334666777788888888887763 336778888888888888888888888888876332 12567788888888888
Q ss_pred ChHHHHHHHHHhh
Q 041458 253 RTEEAIRFFRDLP 265 (568)
Q Consensus 253 ~~~~A~~~~~~~~ 265 (568)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.3e-08 Score=79.40 Aligned_cols=139 Identities=14% Similarity=0.002 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041458 390 VGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEI 469 (568)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 469 (568)
.|++++|+..++......+. +...+-.+...|.+.|++++|++.|++.++... -+..+|..+..+|...|++++|...
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence 45566666666666554222 334566788889999999999999999988632 2577899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEV-FQMMIEKGQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 532 (568)
|++..+..+. +...|..+...|.+.|+.++|.+. ++++.+.. +-+..+|......+...|+
T Consensus 88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999876544 678899999999999998876655 58888742 3366777776666666664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-07 Score=86.52 Aligned_cols=84 Identities=18% Similarity=0.089 Sum_probs=36.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChHHHH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP-DVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~ 502 (568)
..++.++|...+++..+.. +.+...+..+...+...|++++|.+.|+++.+..... +...+..++..+...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 3344444444444444431 1133444444444555555555555554444332110 1334444444444444444444
Q ss_pred HHHHHH
Q 041458 503 EVFQMM 508 (568)
Q Consensus 503 ~~~~~m 508 (568)
..+++.
T Consensus 276 ~~~r~a 281 (287)
T 3qou_A 276 SXYRRQ 281 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-07 Score=94.67 Aligned_cols=155 Identities=14% Similarity=0.027 Sum_probs=119.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
.|++++|+..|++.++.. +.+...+..+...+.+.|++++|.+.|++..+... .+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999988763 34688899999999999999999999999998753 3678899999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 041458 156 VEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE---RGVHAAMKLLDDIIAK 232 (568)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 232 (568)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 4568899999999999999999999999998864 33678888899999999 9999999999999887
Q ss_pred CC
Q 041458 233 GG 234 (568)
Q Consensus 233 ~~ 234 (568)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.3e-07 Score=79.04 Aligned_cols=87 Identities=5% Similarity=-0.147 Sum_probs=40.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+...|++++|...|++.. .++...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 334444455555555554442 1233444444444555555555555555444432 11333444444445555555
Q ss_pred HHHHHHHHHHHh
Q 041458 464 EEALEIFVVMEE 475 (568)
Q Consensus 464 ~~a~~~~~~m~~ 475 (568)
++|.+.|++..+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=87.63 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=131.5
Q ss_pred CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 041458 286 EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY-HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVK 364 (568)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 364 (568)
.|++++|.+++++..+.. +. .+.. .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 466777777777665431 11 0222 46777777777654 346777888888888
Q ss_pred HHHHHhhCCCCC-C----hhhHHH-HHHHHhCCCHHHHHHHHHHHhhCC---CCCC--hhhHHHHHHHHHhcCChhHHHH
Q 041458 365 CLDQMFHRRCKP-N----EGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQ---NSSP--QEFYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 365 ~~~~~~~~~~~~-~----~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~~~~A~~ 433 (568)
.+.+........ + ...+.. ...+...|++++|...|++..... ..+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 888776532111 1 112222 456666788888888887664421 1111 2456666677766 88888888
Q ss_pred HHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHccCChHHHHH
Q 041458 434 LLYEMTKYGFTP-D----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKPD-VDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 434 ~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~ 503 (568)
.|++..+..... + ..++..+...|...|++++|.+.|++..+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887766531110 1 345667777777888888888888777642 11111 2245556666677788888888
Q ss_pred HHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHH
Q 041458 504 VFQMMIEKGQMPN------ETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 504 ~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
.+++.. . .|+ ...+..++.++ ..|+.+...+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888777 3 221 12344445544 4566666555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-06 Score=78.52 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhC-C-CHHHHHHHH
Q 041458 324 TDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG-KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGV-G-KVQEAFAII 400 (568)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~a~~~~ 400 (568)
.++|++++++++..+.. +..+|+.--..+...| .+++++..++.++...++.......-...+... + ++++++..+
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34455555555543322 3333444444444444 355555555555544333222222211111221 3 455666666
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-------HHH
Q 041458 401 QSLGNKQNSSPQEFYKYVITSLCRKGKTY--------QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL-------IEE 465 (568)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~ 465 (568)
+.+.+..+. +...|+.-...+.+.|..+ ++++.++++++..+. |...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 666655443 5556665555555555555 788888888876443 66777777777777665 678
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHH
Q 041458 466 ALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT--------------------DLSLEVFQMMIEKG-----QMPNETTY 520 (568)
Q Consensus 466 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g-----~~p~~~~~ 520 (568)
++++++++....+. |...|+-+-..+.+.|+. ....+...++...+ -.++...+
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 88888888766555 777787776666666653 22333333333221 13577888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH-HcCCCCHHHHH
Q 041458 521 TILVEGIAHQDELELSAEVLKELQ-LRQVVSESAVE 555 (568)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~ 555 (568)
..++..|...|+.++|.++++.+. +.++.....-.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 888899998999999999999986 55655444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.6e-07 Score=71.41 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
...+..+...+...|++++|.++++++.+.... +...+..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 345566666666677777777777666654322 45566666777777777777777777776642 3356666677777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhc
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (568)
+...|++++|.++++++.+..+.+......+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 77777777777777777777777666666666555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.5e-06 Score=75.63 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=113.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----hhhHHHH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQ-----EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT-PD----SYTYSSL 453 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 453 (568)
+..+...|++++|...+++........+. ..+..+...+...|++++|+..+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44566677777777777776654322111 12334566666778889999999988874322 22 2257888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 041458 454 IRGLCMEGLIEEALEIFVVMEE----Y-DYKP-DVDNFNALLLGLCKSRRTDLSLEVFQMMIEK----GQMPN-ETTYTI 522 (568)
Q Consensus 454 ~~~~~~~g~~~~a~~~~~~m~~----~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ 522 (568)
...|...|++++|..+|+++.+ . +..+ ...++..+...|.+.|++++|.+.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8889999999999999988873 1 1122 2336788888999999999999998887752 22222 577888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHH
Q 041458 523 LVEGIAHQDE-LELSAEVLKELQL 545 (568)
Q Consensus 523 ll~~~~~~g~-~~~a~~~~~~~~~ 545 (568)
+..++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888999994 6999999888765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.9e-06 Score=74.32 Aligned_cols=197 Identities=10% Similarity=0.035 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVG--KVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK-TYQAFQLL 435 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 435 (568)
+++++.+++.++...++.......-...+...+ .+++++..+..+.+.++. +...|+.-...+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543322222222222233333 356666666666665444 55667766666666676 47778888
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc------
Q 041458 436 YEMTKYGFTPDSYTYSSLIRGLCME--------------GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS------ 495 (568)
Q Consensus 436 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------ 495 (568)
.++++..+. |...|+.....+.+. +.++++++++.......+. |...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 777776433 556666655555443 4578888888888866554 777777665555555
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 496 -----RRTDLSLEVFQMMIEKGQMPNETTYTILVE-----GIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 496 -----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
+.++++++.++++.+. .||. .|..+.. +....|..++...++.++++.+|....-+..+...+
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4578999999999984 5654 3433222 222467888999999999999999777666665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-07 Score=72.15 Aligned_cols=117 Identities=10% Similarity=-0.004 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344555556666666666666666666544322 45566666666666666666666666666541 3345566666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
+...|++++|.+.+++..+..+.+......+...+...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666666666566666655555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.6e-07 Score=72.15 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
...+..+...+...|++++|.+.|++..+..+. +...|..+..+|...|++++|++.|+++.+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 446777788888889999999999888876544 77888888888889999999999999888852 3356788888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
+...|++++|.+.++++++..+.++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999888886643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-05 Score=73.39 Aligned_cols=219 Identities=12% Similarity=0.125 Sum_probs=125.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-C-ChHHHHH
Q 041458 113 KMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG-NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCML-G-NLNQSLQ 189 (568)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~~ 189 (568)
..++|+++++.++..+.. +..+|+.--..+...| +++++++.++.+.... |.+..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345677777777665422 4455666655666666 4777777777776653 44666666666655555 5 6677777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-------h
Q 041458 190 FLDRLIQKGLVPNAFTYSFLLEAAYKERGVH--------AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGR-------T 254 (568)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~ 254 (568)
+++++.+... .|...|+--.-...+.+.++ ++++.++++++.... |...|+.....+.+.+. +
T Consensus 147 ~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHH
Confidence 7777766532 25556655444444444333 677777777766333 66667666666666554 5
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCH--------------------HHHHHHHHHhccCC-----CCcCHh
Q 041458 255 EEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRW--------------------EEANELLAEMDGGD-----RSPTIV 309 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~~ 309 (568)
+++++.++++....+. |...|+-+-..+.+.|.. .+..+...++...+ -.+...
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 6777777666655333 556666555555554442 22222222222221 124556
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
.+..+++.|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 666777777777777777777777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-06 Score=74.04 Aligned_cols=127 Identities=13% Similarity=-0.054 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...+++..... +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344555566666666666666553 3455666666666666666666666666665543 3345566666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCc----------------ccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 041458 321 HGKTDHALKVLDEMVKGRFRPSA----------------ASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
.|++++|.+.|++..+.... +. ..+..+..++.+.|++++|...+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 67777776666666654221 11 445556666666777777777776666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-06 Score=75.79 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=81.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHh----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhhHHH
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQKGL-VPNAF----TYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-PN----LVSYNV 243 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 243 (568)
.+..+...|++++|.+++++..+... .|+.. .+..+...+...+++++|...|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35556666666667666666655321 11111 1222344444455666666666666553211 11 124556
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC-----CCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CCCc-CHhhHH
Q 041458 244 LLTGLCKEGRTEEAIRFFRDLPSK-----GFEPN-VVSYNILLRSLCMEGRWEEANELLAEMDGG----DRSP-TIVTYN 312 (568)
Q Consensus 244 ll~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~ 312 (568)
+...|...|++++|...|+++.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666666666666666665421 11111 224555566666666666666666554321 1111 134555
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHH
Q 041458 313 ILIGSLAYHGK-TDHALKVLDEMV 335 (568)
Q Consensus 313 ~l~~~~~~~g~-~~~a~~~~~~~~ 335 (568)
.+..+|.+.|+ .++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55566666663 366665555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-06 Score=68.70 Aligned_cols=114 Identities=9% Similarity=-0.084 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIA 528 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 528 (568)
.+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444455555555555555554433211 34445555555555555555555555555431 223445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhc
Q 041458 529 HQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564 (568)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (568)
..|++++|.+.++++.+..+.+......+...+...
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 555555555555555555555555555554444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=75.34 Aligned_cols=99 Identities=17% Similarity=0.040 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIA 528 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 528 (568)
.+..+...+...|++++|...|+......+. +...|..+..+|...|++++|.+.+++++... +.+...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 4445555555666666666666655544322 45555556666666666666666666665531 224455555556666
Q ss_pred hcCChhHHHHHHHHHHHcCCC
Q 041458 529 HQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~~~ 549 (568)
..|++++|.+.+++.++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHHCcC
Confidence 666666666666666655554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-06 Score=71.65 Aligned_cols=130 Identities=10% Similarity=0.006 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.... +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 446677788888999999999999888753 235778888889999999999999999998875433 677888899999
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPNETTYTI--LVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
...|++++|.+.++++.+.. +.+...+.. ....+...|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998852 335555533 33447778999999998887643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-06 Score=71.45 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...+..+...+.+.|++++|+..|++..+..+ .+...|..+..+|...|++++|.+.|++..+..+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 34567777888899999999999999887632 25778889999999999999999999999876544 67888899999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHH
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNET 518 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ 518 (568)
|...|++++|.+.|++.++. .|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999999884 56654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.9e-07 Score=75.14 Aligned_cols=125 Identities=9% Similarity=0.031 Sum_probs=86.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCh--HH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG-LCKSRRT--DL 500 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 500 (568)
..|++++|+..+++..+.. +.+...+..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777777777776653 235567777777788888888888888877754333 56667777777 6677777 88
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
|.+.++++.+.. +.+...+..+...+...|++++|...++++++..+.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 888888877752 33567777777778888888888888888888777743
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=68.69 Aligned_cols=108 Identities=17% Similarity=0.066 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|.+.+++..+.+.. +...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 446667888999999999999999988763 236778889999999999999999999999876544 678899999999
Q ss_pred HccCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMP-NETTYTILV 524 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll 524 (568)
...|++++|.+.|++.++. .| +...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 9999999999999999985 45 445554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.5e-06 Score=75.61 Aligned_cols=127 Identities=15% Similarity=0.089 Sum_probs=74.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--ChhhHH
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGF---TPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEE---Y-DYKP--DVDNFN 486 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~-~~~p--~~~~~~ 486 (568)
+...+...|++++|+..+++..+... .+. ..+++.+...|...|++++|..++++..+ . +..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 34445556666666666666654211 111 23566667777777777777777766652 1 1111 114666
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEK----GQMP-NETTYTILVEGIAHQDELELS-AEVLKELQ 544 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~ 544 (568)
.+...|...|++++|.+.+++..+. +... -..+|..+...+...|++++| ..++++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6777777777777777777766542 1111 145666677777777777777 66666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.6e-07 Score=82.11 Aligned_cols=99 Identities=12% Similarity=0.022 Sum_probs=74.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...+..+...+.+.|++++|+..|+.+.+... .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455667777778888888888888888877542 266777777888888888888888888877653 446777778888
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 041458 177 GLCMLGNLNQSLQFLDRLIQK 197 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~ 197 (568)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888777654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=68.67 Aligned_cols=109 Identities=11% Similarity=0.007 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIA 528 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 528 (568)
.+..+...+...|++++|.+.|++..+.... +...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3445555556666666666666665544322 45556666666666666666666666666541 224555666666666
Q ss_pred hcCChhHHHHHHHHHHHcC------CCCHHHHHHHHH
Q 041458 529 HQDELELSAEVLKELQLRQ------VVSESAVERLVM 559 (568)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 559 (568)
..|++++|...+++.++.+ +.+......+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 6666666666666666666 544444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-06 Score=66.75 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++.+.... +...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 4567778888999999999999999988753 335678888999999999999999999998865433 67788899999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQ 530 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 530 (568)
+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999998752 33556666665555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-06 Score=69.67 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=81.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
..+..+...+...|+++.|...|+...+... .+..++..+..++...|++++|.+.+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3456666677777888888888877776532 256667777777777777777777777776642 34566677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHH--HHHHHHHcCCHHHHHHHHHHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSF--LLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~ 229 (568)
...|++++|.+.|++..+... .+...+.. ....+.+.|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777777766532 13333322 222355556666666666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-06 Score=65.39 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
..+..+...+...|++++|.+.++...+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34555566666666666666666666644322 55566666666666677777777776666642 23456666666667
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 041458 528 AHQDELELSAEVLKELQLRQVVSESAVERLVM 559 (568)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 559 (568)
...|++++|.+.+++..+.++.++.....+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 77777777777777777766666655555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.3e-07 Score=76.47 Aligned_cols=158 Identities=9% Similarity=-0.081 Sum_probs=106.1
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY----GFTP-DSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 463 (568)
..|++++|.+.++.+.. .+......+..+...+...|++++|...+++..+. +..| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35666777764444433 22234566777888888888888888888877651 1121 245677788888889999
Q ss_pred HHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHccCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCC
Q 041458 464 EEALEIFVVMEEY----DYKP--DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG---QMPN--ETTYTILVEGIAHQDE 532 (568)
Q Consensus 464 ~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~ 532 (568)
++|.+.+++..+. +-.| ....+..+...+...|++++|.+.+++..+.. -.+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999988877642 2111 23457778888888999999999988877421 1111 2345677788888999
Q ss_pred hhHHHHHHHHHHHcC
Q 041458 533 LELSAEVLKELQLRQ 547 (568)
Q Consensus 533 ~~~a~~~~~~~~~~~ 547 (568)
+++|.+.+++..+..
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888876543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.8e-07 Score=81.98 Aligned_cols=195 Identities=12% Similarity=0.022 Sum_probs=108.3
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566677777778888888888888777652 3367777778888888888888888888877653 235667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH
Q 041458 212 AAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE 291 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 291 (568)
++...|++++|...|++..+.... +...+...+....+. .++.... .........+......+.. + ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRWN-SIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHHH-HHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHHH-HHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 777888888888888777654210 100111111111111 1111111 1111222223333333322 2 2566777
Q ss_pred HHHHHHHhccCCCCcCHhhHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 041458 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYH-GKTDHALKVLDEMVK 336 (568)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 336 (568)
|.+.+++..+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777776665542 22233333333334443 456667777766554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.3e-07 Score=79.76 Aligned_cols=139 Identities=7% Similarity=-0.120 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNALLLGL 492 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 492 (568)
+..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 444566777788888888888777654 3443355556667788888888888887554431 111 23566777788
Q ss_pred HccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPN--ETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERL 557 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 557 (568)
...|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++...++. ..+...|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 888888888888888875332243 345566677788888888888888888888887 5544433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=73.79 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=100.8
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCh-
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNC-LCKKGNV- 149 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~- 149 (568)
.+...|++++|+..++..++.. +.+...|..+...+...|++++|+..|+.+.+... .+...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcc
Confidence 3566889999999999988764 45788899999999999999999999999987643 367778888888 7788998
Q ss_pred -hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 150 -GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG 198 (568)
Q Consensus 150 -~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 198 (568)
++|...|++..+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998763 4467888899999999999999999999998863
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-06 Score=80.49 Aligned_cols=131 Identities=13% Similarity=-0.033 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--------------SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY 478 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 478 (568)
..+..+...+.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|.+.+++..+...
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4566677777788888888888888776532211 36788888888888999999999988887644
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 041458 479 KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELS-AEVLKELQL 545 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 545 (568)
. +...|..+..+|...|++++|.+.|+++++.. +.+...+..+..++...|+.++| ...+++|+.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 67788888888888999999999998888752 33667788888888888888887 456666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-06 Score=67.52 Aligned_cols=118 Identities=14% Similarity=0.014 Sum_probs=94.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 44667888888999999999999999988753 236778888899999999999999999998875433 6788889999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD 531 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 531 (568)
++.+.|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 9999999999999999998752 224566666666666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=9e-07 Score=78.78 Aligned_cols=135 Identities=7% Similarity=-0.048 Sum_probs=96.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEG 461 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 461 (568)
...+...|++++|.++|..+...++ +....-.+...+.+.+++++|+..|+...+.. .|. ...+..+..++...|
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 5567778888888888888776543 22244445557788899999999997554421 111 236777888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 462 LIEEALEIFVVMEEYDYKPD--VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 462 ~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
++++|++.|++.......|. .........++.+.|+.++|..+|+++... .|+...+..|
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 99999999998875433243 346677778888999999999999999885 5664444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-06 Score=66.17 Aligned_cols=119 Identities=12% Similarity=-0.002 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 4557777888889999999999999888753 235778888889999999999999999998875433 67788889999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDEL 533 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 533 (568)
+...|++++|.+.+++..+.. +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999998852 34677787888888777764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-05 Score=72.78 Aligned_cols=59 Identities=12% Similarity=-0.096 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC----CCC-ChhHHHHHHHHHHcCCCHHHH-HHHHHH
Q 041458 240 SYNVLLTGLCKEGRTEEAIRFFRDLPSKG----FEP-NVVSYNILLRSLCMEGRWEEA-NELLAE 298 (568)
Q Consensus 240 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 298 (568)
+++.+...|.+.|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...+++
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444455555555555555554443220 000 033444455555555555555 444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=74.76 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=81.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCh
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS----GII-PDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~ 149 (568)
..|++++|...++.+.. .+......+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46777777775544433 22335566777777777777877777777776651 111 1233455666666677777
Q ss_pred hhHHHHHHHHHhC----CCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHHcCC
Q 041458 150 GYAMQLVEKMEDY----GYP--TNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPN----AFTYSFLLEAAYKERG 218 (568)
Q Consensus 150 ~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~ 218 (568)
++|.+.+++..+. +-. ....++..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777666665432 101 1133455566666666666666666665543100 001 1123344444455555
Q ss_pred HHHHHHHHHHH
Q 041458 219 VHAAMKLLDDI 229 (568)
Q Consensus 219 ~~~a~~~~~~~ 229 (568)
+++|.+.+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=6e-06 Score=66.71 Aligned_cols=114 Identities=12% Similarity=-0.074 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD----VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYT 521 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 521 (568)
+...+..+...+...|++++|.+.|++..+.. |+ ...|..+...|...|++++|.+.+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34456666666677777777777777766542 33 4566667777777777777777777776641 33566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhh
Q 041458 522 ILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
.+..++...|++++|.+.+++.++..+.+......+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777776666665555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-06 Score=68.99 Aligned_cols=94 Identities=14% Similarity=-0.048 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+..+. +...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3334444455555555555555544432 113444444555555555555555555555443322 34444445555555
Q ss_pred cCChHHHHHHHHHHHH
Q 041458 495 SRRTDLSLEVFQMMIE 510 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~ 510 (568)
.|++++|.+.|++..+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-06 Score=69.92 Aligned_cols=99 Identities=11% Similarity=-0.059 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+..+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 34556667788888899999999999888753 236777888888899999999999999988876444 6778888888
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~ 511 (568)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988874
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-06 Score=64.57 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP--NETTYTILV 524 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll 524 (568)
...+..+...+...|++++|...+++..+.... +...|..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445666667777777777777777777654333 56667777777777777777777777777642 23 466777777
Q ss_pred HHHHhc-CChhHHHHHHHHHHHcCCCC
Q 041458 525 EGIAHQ-DELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 525 ~~~~~~-g~~~~a~~~~~~~~~~~~~~ 550 (568)
..+... |++++|.+.++++....+.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 777777 77788877777777776653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-06 Score=70.08 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
+...|..+...+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|...|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666777777777777777777777653 225566777777777777777777777777765433 5667777777
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~ 511 (568)
+|...|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777663
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.4e-06 Score=66.25 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG--QMPN----ETTYTIL 523 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~l 523 (568)
+..+...+.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|++.+++.++.+ ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 334444444445555555555444443222 34444444445555555555555554444320 0011 1234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
..++...|++++|.+.+++.++..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 445555555555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=5.3e-06 Score=66.07 Aligned_cols=97 Identities=14% Similarity=-0.101 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.... +...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555432 113444555555555555555555555555543322 44455555555
Q ss_pred HHccCChHHHHHHHHHHHH
Q 041458 492 LCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~ 510 (568)
|...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.0002 Score=65.63 Aligned_cols=188 Identities=9% Similarity=0.019 Sum_probs=128.8
Q ss_pred ccCChH-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041458 75 RDHKLN-DAFLQLERMVSKGHKPDVVQATNLLYDLCKANK----------MKKAIKVMEMMVSSGIIPDASSYTYLVNCL 143 (568)
Q Consensus 75 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 143 (568)
+.|.+. +|+.+++.++..++ -+..+|+.--..+...+. +++++.+++.+...++. +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 345544 79999999988754 366667764444433332 67888899888886543 777888877777
Q ss_pred HhcCC--hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc----
Q 041458 144 CKKGN--VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN-LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE---- 216 (568)
Q Consensus 144 ~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 216 (568)
.+.++ +++++..++++.+.. +.|..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 77774 789999999998764 5588888888888888887 58899999998887543 777777766665554
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----------CChHHHHHHHHHhhhC
Q 041458 217 ----------RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE-----------GRTEEAIRFFRDLPSK 267 (568)
Q Consensus 217 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~ 267 (568)
+.++++++.+++.+... +-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 34667777777777663 33666666444444433 2355566666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=6.1e-06 Score=77.35 Aligned_cols=124 Identities=15% Similarity=0.023 Sum_probs=72.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD--------------ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY 162 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 162 (568)
+...+..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|++.|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777888888888888888888877542211 245555555555666666666666555554
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 041458 163 GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAA 222 (568)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 222 (568)
. +.+..+|..+..+|...|++++|.+.|++..+.. +.+...+..+...+.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 2345555555555555666666666555555542 12344555555555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.6e-06 Score=64.12 Aligned_cols=97 Identities=19% Similarity=0.034 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
..|..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|.+.+++..+.... +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 456677788889999999999999988763 235778889999999999999999999999876544 678888999999
Q ss_pred HccCChHHHHHHHHHHHHC
Q 041458 493 CKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~ 511 (568)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999998874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-06 Score=65.04 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..+++.++.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344555566666666666666666654332 55566666666666666666666666666541 2245556666666666
Q ss_pred cCChhHHHHHHHHHHHcCCC
Q 041458 530 QDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~~~ 549 (568)
.|++++|...++++++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 66666666666666655544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-05 Score=62.01 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=51.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDV---DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN---ETTYTILVEG 526 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~ 526 (568)
+...+...|++++|.+.|+.+.+.... +. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344455555555555555555543221 12 344455555555566666666665555531 112 3445555555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
+...|++++|...++++++..+.++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 5566666666666666666555544433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.3e-06 Score=63.69 Aligned_cols=108 Identities=9% Similarity=0.007 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PD----VDNFN 486 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~~~ 486 (568)
..+..+...+.+.|++++|++.|++.++... .+...|..+..+|...|++++|++.+++..+.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4567788889999999999999999988632 25778889999999999999999999988753211 11 23677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
.+..++...|++++|++.|++.+.. .||..+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 7888899999999999999998874 5776655443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-05 Score=60.07 Aligned_cols=111 Identities=14% Similarity=-0.005 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3456677788888999999999999888753 235677888888899999999999999988865433 67788888899
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
+...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 999999999999999988752 234455544433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-05 Score=63.36 Aligned_cols=107 Identities=7% Similarity=-0.005 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PD----VDNFN 486 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~~~ 486 (568)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|..+++...+.... ++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555556666666666666666665542 224445555666666666666666666655532111 11 44555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTI 522 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 522 (568)
.+...+...|++++|.+.++++.+. .|+...+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 5555566666666666666665553 334444333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-05 Score=68.94 Aligned_cols=133 Identities=9% Similarity=-0.086 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD---------------SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY 478 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 478 (568)
.+..+...+...|++++|+..|++..+...... ...+..+..+|...|++++|...++...+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 355566677778888888888888776421111 25777888888889999999999988886543
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCC
Q 041458 479 KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSA-EVLKELQLRQV 548 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~ 548 (568)
. +...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++. ..+..+...+.
T Consensus 120 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 120 N-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3 67788888888999999999999999888752 336677777777777777776666 55666655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.8e-06 Score=65.66 Aligned_cols=103 Identities=12% Similarity=-0.018 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
..+..+...+...|++++|...|+......+. +...|..+..+|...|++++|...+++.++.+ +.+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 45566677778888888888888888765443 67778888888888888888888888888752 33566777778888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 528 AHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
...|++++|.+.++++++..+.++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 8888888888888888877766443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.5e-05 Score=62.06 Aligned_cols=112 Identities=14% Similarity=-0.069 Sum_probs=89.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFN 486 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 486 (568)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|.+.+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4566777888889999999999999998875 455 577888888999999999999999998865433 677888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
.+..++...|++++|.+.+++..+.. +.+...+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 89999999999999999999998852 2345555544443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.5e-05 Score=66.83 Aligned_cols=139 Identities=8% Similarity=-0.113 Sum_probs=103.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhH
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDV----------------DNF 485 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----------------~~~ 485 (568)
....|+++++.+.|+.-.+.. ......+..+...+...|++++|.+.|++..+.... +. ..|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHH
Confidence 334455555555554222110 112446777888899999999999999999875332 22 788
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 486 NALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 486 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
..+..+|...|++++|...+++.++.. +.+...+..+..++...|++++|.+.+++.++..+.+......+...+..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 889999999999999999999999862 45788899999999999999999999999999999998888877766644
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-05 Score=64.47 Aligned_cols=104 Identities=8% Similarity=-0.069 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
...+..+...+...|++++|.+.|++..+.... +...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555666666666666666666666654332 55566666666666666666666666666542 2245566666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
+...|++++|.+.+++.++..+.+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 66666666666666666666665433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-05 Score=60.61 Aligned_cols=93 Identities=15% Similarity=0.016 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCc--CHhhHHHHHHHHH
Q 041458 242 NVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSP--TIVTYNILIGSLA 319 (568)
Q Consensus 242 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 319 (568)
..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++..+.. +. +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 3333444444444444444444433211 123333444444444444444444444443332 11 2334444444444
Q ss_pred hc-CChHHHHHHHHHHHH
Q 041458 320 YH-GKTDHALKVLDEMVK 336 (568)
Q Consensus 320 ~~-g~~~~a~~~~~~~~~ 336 (568)
.. |++++|.+.++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 44 444444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=63.34 Aligned_cols=113 Identities=9% Similarity=0.069 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCC----HHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ--MPN----ETTY 520 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~ 520 (568)
...+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345677888888899999999999888865433 677888888889999999999999988877421 122 6778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 521 TILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
..+..++...|++++|.+.++++.+..+ ++.....+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 8888888899999999999999988877 455555554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=65.81 Aligned_cols=68 Identities=12% Similarity=-0.000 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
..|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++++|...+++.++.++.+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 345555555555566666666655555531 22455555555555566666666666666665555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=5e-05 Score=60.24 Aligned_cols=103 Identities=10% Similarity=-0.039 Sum_probs=84.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041458 445 PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILV 524 (568)
Q Consensus 445 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 524 (568)
.+...+..+...+...|++++|...|+...+.... +...|..+..++...|++++|...+++..+.+ +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 35677888888888999999999999888865443 67788888888999999999999999888753 34677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 525 EGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
.++...|++++|...++++++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888999999999999988877665
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=61.78 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+..+. +...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 35556677888899999999998888753 225777888888888999999999999988876544 6778888888899
Q ss_pred ccCChHHHHHHHHHHHHC
Q 041458 494 KSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~ 511 (568)
..|++++|...+++.++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988863
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.11 E-value=8.1e-06 Score=62.99 Aligned_cols=85 Identities=14% Similarity=0.009 Sum_probs=42.0
Q ss_pred cCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 425 KGKTYQAFQLLYEMTKYGF--TPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
.|++++|+..|++.++.+. +.+...+..+...|...|++++|.+.|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 3555556666655554321 112334555555555555555555555555544333 3445555555555555555555
Q ss_pred HHHHHHHH
Q 041458 503 EVFQMMIE 510 (568)
Q Consensus 503 ~~~~~m~~ 510 (568)
+.+++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-05 Score=64.73 Aligned_cols=134 Identities=9% Similarity=-0.037 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-Ch
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT-PD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKP-DV 482 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~ 482 (568)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34667777788888888888888877653111 11 136777888888999999999999887642 1111 14
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEK----GQMP-NETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
..+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46777888889999999999999888753 1111 2356777888889999999999999988764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0001 Score=57.67 Aligned_cols=93 Identities=14% Similarity=0.037 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 041458 416 KYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS----YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD---VDNFNAL 488 (568)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l 488 (568)
..+...+...|++++|...|++..+.. |+. ..+..+..++...|++++|...|+...+.... + ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 345566777888888888888887653 332 36777788888888888888888888765333 3 5667778
Q ss_pred HHHHHccCChHHHHHHHHHHHHC
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
..++...|++++|.+.++++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888889999999998888875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00027 Score=68.84 Aligned_cols=197 Identities=8% Similarity=-0.012 Sum_probs=106.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCc----------------ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKGRFRPSA----------------ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKP- 376 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~- 376 (568)
-...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+.++.......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345677889999999999998876432211 125667778888888888888887766532111
Q ss_pred ChhhHHH----HH-HHHhCCCHHHHHHHHHHHhh----CCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-
Q 041458 377 NEGTYNG----LA-MLCGVGKVQEAFAIIQSLGN----KQNSS-PQEFYKYVITSLCRKGKTYQAFQLLYEMTKY--GF- 443 (568)
Q Consensus 377 ~~~~~~~----~~-~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~- 443 (568)
+...... +. .+...|+.+.|..+++.... .+..+ -..++..+...+...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1111111 11 12234666666666665432 11111 1234555566666666666666666655432 11
Q ss_pred -CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CC-C--hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 444 -TP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEY--DY-KP-D--VDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 444 -~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~-~p-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...+.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1234555566666666666666666555421 11 11 1 23344445555556666666666655543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00015 Score=70.61 Aligned_cols=194 Identities=10% Similarity=0.013 Sum_probs=100.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCcH
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIPDA----------------SSYTYLVNCLCKKGNVGYAMQLVEKMEDYG-YPTNT 168 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~ 168 (568)
..+.+.|++++|++.|..+.+....... .++..+...|...|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455666777777777766654321110 124556666677777777776666554310 00111
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C--C
Q 041458 169 ----VTYNSLVRGLCMLGNLNQSLQFLDRLIQK----GLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG--G--K 235 (568)
Q Consensus 169 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~--~ 235 (568)
.+.+.+-..+...|+.+.|.+++...... +..+ -..++..+...+...|++++|..+++++...- . +
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12222333333456666776666655431 2121 13355556666666777777777666654421 1 1
Q ss_pred -CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCC--hhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 236 -PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK----GFEPN--VVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 236 -~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
.....+..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11335566666666777777777666655432 11111 123444445555666666666655554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.6e-05 Score=74.71 Aligned_cols=87 Identities=10% Similarity=-0.043 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEG 526 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 526 (568)
..|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|+++++. .| +...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45556666666666666666666666654333 4556666666666666666666666666653 23 34455555555
Q ss_pred HHhcCChhHHH
Q 041458 527 IAHQDELELSA 537 (568)
Q Consensus 527 ~~~~g~~~~a~ 537 (568)
+.+.|+.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00039 Score=69.74 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChHHHHHH
Q 041458 428 TYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG--LIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR-RTDLSLEV 504 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~ 504 (568)
++++++.++++.+...+ +..+|..-..++.+.| +++++++.++++.+.... |...|+.-..++.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 55555555555554322 4445555555555555 446666666665554444 5555555555555555 55556666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 505 FQMMIEKGQMPNETTYTILVEGIAHQ--------------DELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
++++++.. +-|...|.....++.+. +.++++.+++++++..+|.+..+...+...+..
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 55555532 22455555544444432 335566666666666666655555544444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=61.66 Aligned_cols=93 Identities=11% Similarity=0.008 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041458 460 EGLIEEALEIFVVMEEYDY--KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSA 537 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 537 (568)
.|++++|...|++..+.+. +.+...+..+..+|...|++++|.+.+++.++.. +.+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776431 1245566777777777777777777777777652 335666777777777777777777
Q ss_pred HHHHHHHHcCCCCHHH
Q 041458 538 EVLKELQLRQVVSESA 553 (568)
Q Consensus 538 ~~~~~~~~~~~~~~~~ 553 (568)
..+++.++..+.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777777665543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.5e-05 Score=74.65 Aligned_cols=132 Identities=14% Similarity=0.004 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh------------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS------------------YTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
+..+...+.+.|++++|+..|++.++. .|+. ..|..+..+|.+.|++++|...+++..+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444555556666666666655543 2322 26788888999999999999999998876
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEG-IAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
... +...|..+..+|...|++++|.+.|+++.+. .| +...+..+... ....+..+.+.+.+++++...+.++
T Consensus 260 ~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 260 EEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 433 7788999999999999999999999998764 45 34455544444 2345667888889999988877644
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.96 E-value=7.2e-05 Score=70.85 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--------------CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYG--------------FTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
...+..+...+.+.|++++|++.|++.++.- ..| +..+|..+..+|.+.|++++|.+.+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4557777888888999999999998877510 111 2456667777777777777777777777765
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
... +...|..+..+|...|++++|.+.++++.+.. +.+...+..+..++...++.+++.+
T Consensus 303 ~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 56677777777777777777777777777641 2355666666666666666655543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=8e-05 Score=61.22 Aligned_cols=101 Identities=10% Similarity=0.012 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC--------CC--------CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKY--------GF--------TP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
.+......+.+.|++++|+..|.+.++. .. .| +...|..+..+|.+.|++++|...++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3555666677777777777777776653 00 11 2357788888999999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
.+. +...|..+..+|...|++++|...|++.++. .|+.
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 544 6788899999999999999999999999885 5543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.4e-05 Score=76.01 Aligned_cols=119 Identities=7% Similarity=0.004 Sum_probs=92.3
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++++|+..|++.++.. +.+...|..+...+.+.|++++|++.++++.+... .+..+|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988863 34688899999999999999999999999998753 36778888889999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHH--HHhcCChHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRG--LCMLGNLNQSLQFLD 192 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 192 (568)
+|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988753 2344556555555 778888999998887
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=5e-05 Score=62.10 Aligned_cols=97 Identities=14% Similarity=0.071 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-cH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGII-PD----ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYPT-NT 168 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 168 (568)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +.++ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34566677777788888888888776643100 11 125556666667777777777777665432 1000 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 169 VTYNSLVRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (568)
.++..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555666666666666666666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=77.37 Aligned_cols=117 Identities=10% Similarity=0.023 Sum_probs=57.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHH
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLS 501 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 501 (568)
+.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555432 113445555555555666666666666555554332 445555555556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEG--IAHQDELELSAEVLK 541 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~ 541 (568)
.+.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555531 1122233333333 455555555555555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.94 E-value=8.4e-05 Score=70.40 Aligned_cols=117 Identities=9% Similarity=-0.112 Sum_probs=68.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhC---------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNK---------------QNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSY 448 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 448 (568)
...+.+.|++++|...|++..+. ....+...|..+..+|.+.|++++|++.+++.++... .+..
T Consensus 230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 308 (370)
T 1ihg_A 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTK 308 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHH
Confidence 45566667777777777665541 0111234566666666677777777777776665421 2455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
.+..+..+|...|++++|.+.|++..+.... +...+..+..++...++.+++.
T Consensus 309 a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 309 ALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777777777777666654322 4555555555555555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=6.1e-05 Score=60.35 Aligned_cols=66 Identities=9% Similarity=-0.072 Sum_probs=45.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEK-----GQMPN-ETTY----TILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|...|++.++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6677777777777777777777777762 01453 4566 67777777788888888888887776554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00038 Score=55.24 Aligned_cols=112 Identities=6% Similarity=-0.113 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChHHH
Q 041458 426 GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK----SRRTDLS 501 (568)
Q Consensus 426 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 501 (568)
++.++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777765 22322 6666666677777888887777654 56677777777776 6778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAH----QDELELSAEVLKELQLRQV 548 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~ 548 (568)
.++|++..+.| +...+..|...|.. .++.++|.+++++..+.+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888877754 55666667777776 6778888888888777653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00027 Score=70.90 Aligned_cols=138 Identities=8% Similarity=-0.043 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHH
Q 041458 393 VQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKG--KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG-LIEEALEI 469 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~ 469 (568)
+++++..++.+.+.+++ +..+|..-...+.+.+ +++++++.++++.+...+ |..+|+.-..++.+.| .++++.++
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 66777777777766554 6677888888888888 669999999999987544 6778888888888888 89999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcc--------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKS--------------RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELE 534 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 534 (568)
++++.+..+. |...|+.....+.+. +.++++.+.+++++... +-|...|..+-..+.+.+..+
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 9999887666 788888877776653 45789999999998852 447788888877777776644
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.89 E-value=9.9e-05 Score=72.31 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 482 VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...++++++..+.+..+...+...+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5788899999999999999999999999863 447889999999999999999999999999999999888777777665
Q ss_pred hh
Q 041458 562 DF 563 (568)
Q Consensus 562 ~~ 563 (568)
..
T Consensus 396 ~~ 397 (457)
T 1kt0_A 396 KK 397 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00019 Score=57.49 Aligned_cols=95 Identities=16% Similarity=0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------Ch-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTP------DS-----YTYSSLIRGLCMEGLIEEALEIFVVMEEY------- 476 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------- 476 (568)
+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4455666777888888888888877642220 12 27888889999999999999999988875
Q ss_pred CCCCChhhH----HHHHHHHHccCChHHHHHHHHHHHH
Q 041458 477 DYKPDVDNF----NALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 477 ~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
... +...| .....++...|++++|+..|++.++
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 433 56678 8889999999999999999999886
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00057 Score=54.17 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=71.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhh
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGY 151 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 151 (568)
.+++++|+..|++..+.|. ++.. +...|...+.+++|+++|++..+.| +...+..|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 3456677777777766652 2222 5555556666677777777777654 55666666666666 667777
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQFLDRLIQKG 198 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 198 (568)
|.+.|++..+.| ++..+..|...|.. .++.++|.+.|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777776654 55666666666666 666777777776666654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00022 Score=51.54 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 482 VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+++..+..+.+......+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455556666666667777777666666542 335566666666677777777777777777777666666666666655
Q ss_pred hhc
Q 041458 562 DFE 564 (568)
Q Consensus 562 ~~~ 564 (568)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.73 E-value=7.6e-05 Score=69.87 Aligned_cols=149 Identities=13% Similarity=-0.030 Sum_probs=61.8
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHH
Q 041458 203 AFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRS 282 (568)
Q Consensus 203 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 282 (568)
...+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344555555666667777777777766654 122211 112222222222211 1245556666
Q ss_pred HHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-HHhcCCHHH
Q 041458 283 LCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIAR-LCSEGKVDL 361 (568)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~ 361 (568)
|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665543 334556666666666666666666666666543211 22233333222 122334444
Q ss_pred HHHHHHHHhhC
Q 041458 362 VVKCLDQMFHR 372 (568)
Q Consensus 362 a~~~~~~~~~~ 372 (568)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 55555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.4e-05 Score=58.52 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..+..+...+...|++++|.+.|++..+.... +...|..+..++.+.|++++|.+.+++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555555556666666666666655543322 455555666666666666666666666655
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00039 Score=53.02 Aligned_cols=79 Identities=13% Similarity=0.015 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
+|+..|++..+.. +.+...+..+...+...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777776643 224566777777777778888887777777765433 56677777777777777777777777776
Q ss_pred H
Q 041458 510 E 510 (568)
Q Consensus 510 ~ 510 (568)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00039 Score=52.43 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=71.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------HHHH
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVS------ESAV 554 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 554 (568)
+...|..+...+...|++++|.+.+++.++.. +.+...|..+..++...|++++|.+.+++.++..+.+ ....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 56778889999999999999999999999862 4478899999999999999999999999999999987 6666
Q ss_pred HHHHHhhhhcC
Q 041458 555 ERLVMQYDFEG 565 (568)
Q Consensus 555 ~~l~~~~~~~g 565 (568)
..+...+...|
T Consensus 82 ~~~~~~~~~~~ 92 (111)
T 2l6j_A 82 YRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00016 Score=57.73 Aligned_cols=86 Identities=17% Similarity=-0.040 Sum_probs=46.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI----------EEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
.+.+.+++|++.+++..+... .+...|..+..++...+++ ++|+..|++..+..+. +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 345566666666666665432 2455666666666655543 3555555555544333 445555555555
Q ss_pred HccC-----------ChHHHHHHHHHHHH
Q 041458 493 CKSR-----------RTDLSLEVFQMMIE 510 (568)
Q Consensus 493 ~~~g-----------~~~~a~~~~~~m~~ 510 (568)
...| ++++|++.|+++++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 5443 44455555554444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00012 Score=58.50 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT----------DLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
.+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|++.++.+ +.+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 34455555555555544333 555555555555554443 35555555555531 2244555555555554
Q ss_pred cC-----------ChhHHHHHHHHHHHcCCCCHH
Q 041458 530 QD-----------ELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 530 ~g-----------~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.| ++++|.+.|++.++.++.+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 42 555555555555555555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00036 Score=68.28 Aligned_cols=126 Identities=11% Similarity=-0.003 Sum_probs=81.7
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-hhhHHH
Q 041458 422 LCRKGKTYQAFQLLYEMTKY---GFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEE-----YDYK-PD-VDNFNA 487 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~-p~-~~~~~~ 487 (568)
+...|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++..+ .|.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777765531 12222 34677788888888888888888877642 2321 22 345777
Q ss_pred HHHHHHccCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIE-----KGQ-MPN-ETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
|...|...|++++|..++++..+ .|- .|+ ..+...+..++...|.+++|+..+.++.+.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887764 231 222 2344455566667788888888888876643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00041 Score=67.85 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=42.5
Q ss_pred HHcCCHHHHHHHHHHHHHc-----CC-CC-CHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-----CC-CCC-hhHHHHH
Q 041458 214 YKERGVHAAMKLLDDIIAK-----GG-KP-NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-----GF-EPN-VVSYNIL 279 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~l 279 (568)
...|++++|+.++++.++. |. .| ...+++.|...|...|++++|..++++..+. |. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666666555442 10 11 1234555555666666666666655554321 11 111 2345555
Q ss_pred HHHHHcCCCHHHHHHHHHHh
Q 041458 280 LRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 280 ~~~~~~~g~~~~a~~~~~~~ 299 (568)
...|...|++++|+.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0011 Score=47.74 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
..+..+...+...|++++|.+.+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555566666666666666666666544322 45566666666666777777777776666541 22445555554444
Q ss_pred Hh
Q 041458 528 AH 529 (568)
Q Consensus 528 ~~ 529 (568)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00085 Score=51.10 Aligned_cols=65 Identities=8% Similarity=-0.024 Sum_probs=29.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
+...+..+...|...|++++|.+.+++.++.. +.+...|..+..++...|++++|...+++.++.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444431 223344444444444444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00069 Score=50.11 Aligned_cols=64 Identities=23% Similarity=0.213 Sum_probs=46.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
+...+..+...|...|++++|.+.|++..+.... +...|..+..+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556777777777778888888888777765433 566777777777777888887777777765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=48.99 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=36.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666666554211 34455566666666666666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.012 Score=46.41 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHH
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR---RTDLSLEVFQMMIEKGQMP--NETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
..+.+.|....+.+. ++..+...+..++++.+ +.++++.++++..+.+ .| ....+-.+.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555444443 45666666666666666 4456666666666642 23 23444455556667777777777
Q ss_pred HHHHHHHcCCCCHHH
Q 041458 539 VLKELQLRQVVSESA 553 (568)
Q Consensus 539 ~~~~~~~~~~~~~~~ 553 (568)
+++.+++..|.+..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 777777777665443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0079 Score=43.95 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVD-NFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
....+...|++++|.+.+++..+.... +.. .|..+..+|...|++++|.+.|++.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566667777777777766654322 445 6666666777777777777777776664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.018 Score=53.03 Aligned_cols=138 Identities=10% Similarity=-0.015 Sum_probs=86.7
Q ss_pred CChhhHHHHHHHHHh--cC---ChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh----cC-C---HHHHHHHHHHHHh
Q 041458 410 SPQEFYKYVITSLCR--KG---KTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCM----EG-L---IEEALEIFVVMEE 475 (568)
Q Consensus 410 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~----~g-~---~~~a~~~~~~m~~ 475 (568)
.+...|...+.+... .+ ...+|..+|++.++. .|+ ...|..+..+|.. .+ . .......++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355666666655432 22 346788888888775 454 3344443333321 11 1 1111112222111
Q ss_pred -CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 476 -YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 476 -~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
...+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++.+..+|.++
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1123467777777777777799999999999998864 7877777778888888999999999999988888754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.091 Score=55.57 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=82.7
Q ss_pred HHhcCChHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 178 LCMLGNLNQSLQ-FLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 178 ~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
....+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.-. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 344667777665 44211 112223556666666777777665543111 11223455677777
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
|.++.+.+. +...|..+...+.+.++++.|++.|.++.. |..+...|...|+.+...++-+....
T Consensus 671 A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777765542 556777777777777777777777776642 33444455556666655554444443
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 337 GRFRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
.| -++....+|.+.|++++|++++.+
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 123334445555666665555433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.033 Score=51.29 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=50.0
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHH
Q 041458 200 VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYN 277 (568)
Q Consensus 200 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 277 (568)
..+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4466666666666666677777777777777764 56666666666777777888887777777665 44544443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.016 Score=42.87 Aligned_cols=64 Identities=11% Similarity=-0.061 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYD------YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..-+..+...+...|+++.|..+|+...+.- -.+....+..+..++.+.|++++|..+++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455566666666666666666554310 112344455555555555555555555555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0026 Score=46.70 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=34.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYGFTPDSY-TYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
...+.+.|++++|+..+++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445556666666766666666542 11344 5666666666666677776666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.17 Score=53.44 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=79.9
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCH
Q 041458 211 EAAYKERGVHAAMK-LLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRW 289 (568)
Q Consensus 211 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 289 (568)
......+++++|.+ ++..+ + +......++..+.+.|..++|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445778888766 44211 1 02223667777788888888887663211 112334567888
Q ss_pred HHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 290 EEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQM 369 (568)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 369 (568)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888865542 567888888888888888888888887642 344555555566666555444433
Q ss_pred h
Q 041458 370 F 370 (568)
Q Consensus 370 ~ 370 (568)
.
T Consensus 734 ~ 734 (814)
T 3mkq_A 734 E 734 (814)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.016 Score=41.76 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 481 DVDNFNALLLGLCKSRR---TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
|...+..+..++...++ .++|..++++.++.+ +-+...+..+...+.+.|++++|..+|+++.+.++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44455555555543333 455666666655531 224455555555555666666666666666655555
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.013 Score=56.28 Aligned_cols=60 Identities=12% Similarity=-0.056 Sum_probs=28.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEK-----G-QMPN-ETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
+++.+..+|...|++++|..++++.++. | ..|+ ..+++.|...|...|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444455555555555555555444421 1 1121 234445555555555555555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.049 Score=42.29 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=50.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhh
Q 041458 495 SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
.+++++|.++|+.+++.+-.- ...|.....--.+.|+.+.|++++.+.+..++.|...+...+.-+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 367788888888887643233 7777777777777888888888888888888888888877776554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.018 Score=55.31 Aligned_cols=86 Identities=8% Similarity=-0.098 Sum_probs=63.4
Q ss_pred cCChhHHHHHHHHHHH---CCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-hhhHHHHHH
Q 041458 425 KGKTYQAFQLLYEMTK---YGFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEE-----YDY-KPD-VDNFNALLL 490 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~li~ 490 (568)
.|++++|+.++++..+ .-+.|+ ..+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677888888877654 112233 35678889999999999999999988753 332 222 346888999
Q ss_pred HHHccCChHHHHHHHHHHHH
Q 041458 491 GLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~ 510 (568)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.026 Score=54.25 Aligned_cols=92 Identities=13% Similarity=-0.003 Sum_probs=44.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-hhh
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYG---FTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEE-----YDY-KPD-VDN 484 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~ 484 (568)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|..++++..+ .|. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344445566666666666555321 1122 12445555555555666666655555432 111 111 223
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 485 FNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 485 ~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
++.|...|...|++++|..+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.018 Score=55.28 Aligned_cols=91 Identities=13% Similarity=-0.011 Sum_probs=50.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC---CCC----ChhHHHHHHHHHHcCCCHHHHHHHHHHhccC-----C--CCcCHhh
Q 041458 245 LTGLCKEGRTEEAIRFFRDLPSKG---FEP----NVVSYNILLRSLCMEGRWEEANELLAEMDGG-----D--RSPTIVT 310 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~~~~---~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~ 310 (568)
+.-+.+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++.... | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334455667777777776665321 111 1345666666677777777776666655321 1 1112345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMV 335 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (568)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5666666666666666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.043 Score=43.27 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCChHHHHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG---LIEEALEIFVVMEEYDYKP--DVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
..+.+-|.+..+.|. ++..+...+..++++.+ +++++..+++...+.+ .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555443 56666667777777776 5567777777776543 12 34555566667777788888888
Q ss_pred HHHHHHHCCCCCC
Q 041458 504 VFQMMIEKGQMPN 516 (568)
Q Consensus 504 ~~~~m~~~g~~p~ 516 (568)
.++.+++ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 8877777 3553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.028 Score=40.45 Aligned_cols=64 Identities=6% Similarity=0.038 Sum_probs=30.9
Q ss_pred ChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGL---IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
|...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444433322 35555555555544333 444444555555555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.39 Score=38.89 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=21.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 214 YKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444444444444433 13444555555555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.086 Score=39.90 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhH
Q 041458 461 GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDL---SLEVFQMMIEKGQMP--NETTYTILVEGIAHQDELEL 535 (568)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~ 535 (568)
..+..+.+-|......|. |+..+--.+..++.+..+..+ ++.++++..+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334455555555544343 466666667777777776555 777777776643 23 23344455567788888888
Q ss_pred HHHHHHHHHHcCCCCHHH
Q 041458 536 SAEVLKELQLRQVVSESA 553 (568)
Q Consensus 536 a~~~~~~~~~~~~~~~~~ 553 (568)
|+++++.+++..|.+..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 888888888888876544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.17 Score=39.33 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=54.8
Q ss_pred CCCHHhHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHh-hHHHHHHH------HHhcCChhhHHHHHHHHHh
Q 041458 95 KPDVVQATNLLYDLCKANKM------KKAIKVMEMMVSSGIIPDAS-SYTYLVNC------LCKKGNVGYAMQLVEKMED 161 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~li~~------~~~~g~~~~a~~~~~~~~~ 161 (568)
+.|..+|-..+...-+.|+. ++.+++|+++... ++|+.. .|...|.. +...+++++|+++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34667777777777777777 7777888877764 334321 12222111 1123555666666665543
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 162 YGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL 199 (568)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 199 (568)
.. +.=...|......-.+.|++..|.+++.+.+..+.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 31 11144555555555555555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.55 Score=35.67 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 513 (568)
.+..-++.....|.-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++-++|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333444444444555554444444322 1233444444555555555555555555555554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.14 Score=37.70 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=44.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSG------IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDY 162 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 162 (568)
+...+..+...+.+.|++..|..+|+.+.+.- ..+...++..+..++.+.|+++.|+..+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677778888888888888888776531 1224456667777777777777777777777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.18 Score=44.49 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CCh
Q 041458 428 TYQAFQLLYEMTKYGFTPD---SYTYSSLIRGLCME-----GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS-RRT 498 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 498 (568)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++..+....-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34666777777764 555 45777888888874 88999999998888765433477777788888874 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 499 DLSLEVFQMMIEKGQM--PNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 499 ~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+++.+.+++.+..+.. |+....+.+ .-++|..+++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 9999999988886544 554333322 2245555555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.98 E-value=1.2 Score=36.13 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=52.9
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 041458 143 LCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAA 222 (568)
Q Consensus 143 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 222 (568)
....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665544 1455666666666666666666666665431 22333344445555554
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 223 MKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
.++-+....+| -++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44444333332 1344444455566666666666543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=1 Score=34.22 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=72.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 259 (568)
-.|..++..++..+.... .+..-||.+|.-....-+-+...+.++.+-.. -|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 345556666666555542 14445555555444444444444444433221 111 12344444444
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 260 FFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF 339 (568)
Q Consensus 260 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (568)
.+-.+-. +......-++.+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 83 C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4433321 3344455566666667777777776665432 255666666667777777777777777776666654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.69 E-value=1.3e-05 Score=74.89 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=160.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
....|..|..+..+.+++.+|++-|- +. -|+..|..+|....+.|.+++-++.+...++. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 34568889999999998888876652 22 27778899999999999999999888766654 235566678899
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
+|++.++..+-.+++ -.||..-...+.+-|...|.++.|.-+|.. +.-|.-|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~---------isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG---------SCCCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh---------CccHHHHHHHHHHHHHHHH
Confidence 999998876654433 246776777778888888888777666643 2235556666777888887
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
|.+.-++.. ++.||-.+-.+|...+++.-|...--.+.-. ..-...++..|-..|.+++-+.+++.-+.
T Consensus 189 AVdaArKAn------s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTTCC------SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHhcC------ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 776554433 6778888888898888887766554444321 11223456668888888888888887763
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 041458 337 GRFRPSAASYNPIIARLCSEGKVDLVVKCLD 367 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 367 (568)
.. +....+|+.|.-.|++- ++++..+.++
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 21 33556677777777665 3444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.43 Score=42.15 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCh
Q 041458 184 LNQSLQFLDRLIQKGLVPN---AFTYSFLLEAAYK-----ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE-GRT 254 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~ 254 (568)
...|...+++.++. .|+ -..|..+...|.+ -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46777777777775 454 4578888888888 489999999999998874433467777788888874 899
Q ss_pred HHHHHHHHHhhhCCCC--CChhHHHHH
Q 041458 255 EEAIRFFRDLPSKGFE--PNVVSYNIL 279 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~--p~~~~~~~l 279 (568)
+++.+.+++....... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999887666 665555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.31 Score=36.87 Aligned_cols=87 Identities=9% Similarity=0.044 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-CCCChhhHHHHHHHHHccCChHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEE---ALEIFVVMEEYD-YKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
....+.+-+.+....|. |+..+--.+.+++.+...... ++.+++...+.+ ..-.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444555555444443 566666677778877776555 777887777643 1113344555666788888888888
Q ss_pred HHHHHHHHCCCCCC
Q 041458 503 EVFQMMIEKGQMPN 516 (568)
Q Consensus 503 ~~~~~m~~~g~~p~ 516 (568)
+.++.+++. .|+
T Consensus 95 ~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 95 KYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHH--CTT
T ss_pred HHHHHHHHh--CCC
Confidence 888888873 563
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.70 E-value=1.7e-05 Score=74.24 Aligned_cols=119 Identities=12% Similarity=0.084 Sum_probs=84.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
++.+|..+-.+|...+.+.-|...--.++- .|| -...++.-|-..|.+++-+.+++.-... -....-+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 667899999999999998887766555552 222 2345677788999999999999887732 2346778999988
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
.|++- ++++-.+.++....+---| -++++|.+...|.++.-++..
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNip------KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIP------KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCT------TTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHH------HHHHHHHHHhhHHHHHHHHhc
Confidence 88887 5666666555443321112 478899999999998876654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.83 Score=34.72 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCCCChhhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRT---DLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 553 (568)
+..|+..+--.+..++.+..+. .+++.++++..+.+..-....+-.|.-++.+.|++++|+++.+.+++..|.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3345555555556666665543 3566666666654311123444455566777777777777777777777775543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.38 E-value=2.1 Score=32.99 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=41.4
Q ss_pred CCChhhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 479 KPDVDNFNALLLGLCKSRRT---DLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.|+..+--.+..++.+..+. .+++.++++..+.+..-.....-.|.-++.+.|++++|+++.+.+++..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34555555555566655543 356666666665321112233334445666777777777777777777776543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.11 E-value=2.3 Score=30.31 Aligned_cols=56 Identities=4% Similarity=0.054 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHH
Q 041458 500 LSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVE 555 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 555 (568)
+..+-++.+...++.|++.+..+.+++|++.+++..|.++++-+..+-......+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~ 83 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYP 83 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHH
Confidence 44555555555566666666666666666666666666666666555444333333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.92 E-value=1.4 Score=45.17 Aligned_cols=127 Identities=11% Similarity=0.109 Sum_probs=76.3
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC------CCCC-CHh----
Q 041458 138 YLVNCLCKKGN-VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN-LNQSLQFLDRLIQK------GLVP-NAF---- 204 (568)
Q Consensus 138 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~------~~~~-~~~---- 204 (568)
.++..+...++ ++.|..+|+++.+.....+......++..+.+.++ --+|.+++.+..+. ...+ +..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444445555 57899999998875321122222334444333332 23455555554321 1111 111
Q ss_pred ------hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 205 ------TYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 205 ------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
....=.+.+...|+++-|+++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111133466788999999999888776 34467889999999999999999998888774
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=15 Score=36.92 Aligned_cols=77 Identities=12% Similarity=0.062 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcC
Q 041458 207 SFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCME 286 (568)
Q Consensus 207 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 286 (568)
...+..+.+.+++......+.. .+.+...-.....+....|+..+|....+.+-..|.. ....+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHC
Confidence 3344556666776665554432 1334444455566667777777777666665544422 445566677776665
Q ss_pred CCH
Q 041458 287 GRW 289 (568)
Q Consensus 287 g~~ 289 (568)
|.+
T Consensus 150 g~l 152 (618)
T 1qsa_A 150 GKQ 152 (618)
T ss_dssp TCS
T ss_pred CCC
Confidence 543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=3.9 Score=38.44 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 041458 451 SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE-----KGQMPNETTYTI 522 (568)
Q Consensus 451 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 522 (568)
..++..+...|+.+++...+..+....+- +...|..++.+|.+.|+..+|.+.|+++.+ .|+.|+..+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34555566667777777666666643322 566677777777777777777777766543 366776655443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.30 E-value=4.8 Score=30.53 Aligned_cols=59 Identities=3% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 041458 500 LSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLV 558 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 558 (568)
+..+-++.+...++.|++.+....+++|.+.+++..|.++++-+..+-......+..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34455555555666777777777777777777777777777776655544444344433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=3.7 Score=38.62 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=63.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ-----LRQVVSESAVERLV 558 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~l~ 558 (568)
....++..+...|+++++...++.+... .+-+...|..++.++.+.|+..+|.+.|+++. +.|..|...+..+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3456778888999999999999999875 24588999999999999999999999999874 46888877777776
Q ss_pred Hhh
Q 041458 559 MQY 561 (568)
Q Consensus 559 ~~~ 561 (568)
...
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.31 E-value=7.6 Score=39.83 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=35.9
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 490 LGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
+.|...|+++-|.++.++.+.. .+-+..+|..|..+|...|+++.|.-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455567777777777777764 2335677777777777777777777766665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.24 E-value=19 Score=34.55 Aligned_cols=96 Identities=14% Similarity=0.026 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCC--hh
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKY--GFTPD---SYTYSSLIRGLCMEGLIEEALEIFVVME----EYDYKPD--VD 483 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~p~--~~ 483 (568)
...|...+...|++.+|..++.++... |..+. ...+...+..|...+++.+|..++.++. .....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888887642 21111 2356667778888899999988888764 2222222 23
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.+...+..+...+++.+|.+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 466777778888899888888877764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.06 E-value=29 Score=36.56 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=140.3
Q ss_pred HHHhcCChHHHHHHHHHhhhCC--CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCC-------CcCHhhHHHHHHH
Q 041458 247 GLCKEGRTEEAIRFFRDLPSKG--FEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDR-------SPTIVTYNILIGS 317 (568)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 317 (568)
+....|+.++++.++......+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888888887766421 111222223344445556665667776666543221 0112223334444
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCCCccc--HH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH--HHHHHhC
Q 041458 318 LAYHGK-TDHALKVLDEMVKGRFRPSAAS--YN--PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG--LAMLCGV 390 (568)
Q Consensus 318 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 390 (568)
.+..|. -+++.+.+..++... +... .. ++...+.-.|+.+....++..+.+.. .+.....+ ...+...
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhC
Confidence 444443 245566666655532 2111 12 22233456677777777777666532 22222222 3344467
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHH---HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNSSPQEFYK---YVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
|+.+.+..+.+.+.... . ...-|. ++.-+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.+.
T Consensus 538 g~~e~~~~li~~L~~~~-d-p~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 538 GRQELADDLITKMLASD-E-SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-C-HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CChHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 88888888877776531 1 112222 3344567778877777788877753 1222222233333444566666677
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCKSRRT-DLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
++++.+.+.+ .|....-..+.-+....|.. .++..++..+.. .+|..+-..-+.++
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 7776665543 34444444444455555554 578888888874 34544443333333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.13 E-value=6 Score=30.07 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=45.7
Q ss_pred CCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 041458 443 FTPDSYTYSSLIRGLCMEGL---IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN 516 (568)
Q Consensus 443 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 516 (568)
-.|+..+--.+.+++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 34555565566666666654 345777777776544222344555666677788888888888887776 3554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.83 E-value=10 Score=41.66 Aligned_cols=144 Identities=12% Similarity=-0.016 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--------------- 479 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--------------- 479 (568)
...++..+.+.+..+-+.++..-. +-+...--.+..+|...|++++|.++|++... |+.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 334556666777777666544322 22333333455667778888888888876421 110
Q ss_pred --------CChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 480 --------PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE----TTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 480 --------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
.-..-|..++..+-+.|.++.+.++.+.+++.....+. ..|..+.+.+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 01234667778888888889888888887764222222 257888888899999999988887776544
Q ss_pred CCCHHHHHHHHHhhhhcC
Q 041458 548 VVSESAVERLVMQYDFEG 565 (568)
Q Consensus 548 ~~~~~~~~~l~~~~~~~g 565 (568)
. -.+.++.|+...|+.|
T Consensus 969 ~-r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 969 L-KKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp S-CHHHHHHHHHHHHHHC
T ss_pred H-HHHHHHHHHHHHHhCC
Confidence 3 4667788887777665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.96 E-value=12 Score=28.94 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=45.0
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 041458 444 TPDSYTYSSLIRGLCMEGL---IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN 516 (568)
Q Consensus 444 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 516 (568)
.|+..+--.+.+++.+... ..+++.+++.+.+.+..-.-...-.+.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 4556665666667766654 346777777776543322344445566677788888888888888777 3564
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.02 E-value=9.6 Score=27.25 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (568)
.++-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.80 E-value=17 Score=39.95 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHH
Q 041458 204 FTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNL----VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNIL 279 (568)
Q Consensus 204 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 279 (568)
.-|.-++..+-+.+.++.+.++-...++...+.+. ..|..+...+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34556666666667777666666655554222121 2466667777777777777777766655432 23455666
Q ss_pred HHHHHcCCCHHHH
Q 041458 280 LRSLCMEGRWEEA 292 (568)
Q Consensus 280 ~~~~~~~g~~~~a 292 (568)
+...|..|..+.-
T Consensus 978 V~~lce~~~~~~L 990 (1139)
T 4fhn_B 978 VNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHCCHHHH
T ss_pred HHHHHhCCChhhh
Confidence 6666666655443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.73 E-value=9.7 Score=30.29 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhc
Q 041458 277 NILLRSLCMEGRWEEANELLAEMD 300 (568)
Q Consensus 277 ~~l~~~~~~~g~~~~a~~~~~~~~ 300 (568)
.-+..+|.+.+++++|+.+++.+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335556666666666666665553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.27 E-value=49 Score=34.88 Aligned_cols=252 Identities=16% Similarity=0.124 Sum_probs=134.3
Q ss_pred HHcCCCHHHHHHHHHHhccCC--CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCCcccHHHHHHHH
Q 041458 283 LCMEGRWEEANELLAEMDGGD--RSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-------RPSAASYNPIIARL 353 (568)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~~~ 353 (568)
....|+.++++.++......+ -.+....-..+.-+....|..+++..++...+...- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 456677777877777665421 122223333444556667776778887777665311 01111122222233
Q ss_pred HhcCC-HHHHHHHHHHHhhCCCCCChhhHHH----HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHH--HHHHhcC
Q 041458 354 CSEGK-VDLVVKCLDQMFHRRCKPNEGTYNG----LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVI--TSLCRKG 426 (568)
Q Consensus 354 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g 426 (568)
+-.|. -+++...+..++.... ......+ ...+...|+.+....+++.+.+.. +......+. -++...|
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 33333 2455666666655321 1111112 233456678777777877766532 222333333 3455789
Q ss_pred ChhHHHHHHHHHHHCCCCCChh-hH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSY-TY---SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~-~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
+.+.+..+.+.+... .+.. -| .++.-+|+-.|+.....++++.+.+.. ..+......+.-++...|+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 999999988888763 2322 22 234556778899888888998888642 223333333333445567777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 041458 503 EVFQMMIEKGQMPNETTYTILVEGIAHQDEL-ELSAEVLKELQ 544 (568)
Q Consensus 503 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 544 (568)
++++.+.+.+ .|...--..+.-+....|+. .++...+..+.
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 7776665542 33333333333333334443 45666666664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.23 E-value=33 Score=32.81 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 217 RGVHAAMKLLDDIIAK-----GGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 217 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
++++.|.+.+-.+.+. ...........++..|.+.|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766555432 2233455667777888888888887776665543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.45 E-value=17 Score=27.63 Aligned_cols=46 Identities=9% Similarity=0.163 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQ 196 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (568)
+..+-++.+....+.|++....+.+++|-+.+|+..|.++|+-++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 568 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 53/372 (14%), Positives = 98/372 (26%), Gaps = 9/372 (2%)
Query: 139 LVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG 198
L + + G+ A + ++ P NT L L++S F I+
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61
Query: 199 LVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAI 258
P L YKERG + + Y L L G E A+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 259 RFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSL 318
+ + + V + ++ + + P +G +
Sbjct: 122 QAYVSALQYNPDLYCVRSD---LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 319 AYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNE 378
E +Y + L D V +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 379 GTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM 438
N + G + A + Q P + L KG +A Y
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA-LKEKGSVAEAED-CYNT 296
Query: 439 TKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT 498
+ + ++L +G IEEA+ ++ E + + L L + +
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKL 355
Query: 499 DLSLEVFQMMIE 510
+L ++ I
Sbjct: 356 QEALMHYKEAIR 367
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 568 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.24 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.0 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.36 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.08 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.04 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.88 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.84 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.81 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.74 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.74 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.7 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.59 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.53 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.47 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.45 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.28 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.97 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.51 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.29 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.7 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.43 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.19 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.26 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-21 Score=187.93 Aligned_cols=384 Identities=15% Similarity=0.034 Sum_probs=269.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 041458 139 LVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERG 218 (568)
Q Consensus 139 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 218 (568)
+...+.+.|++++|++.++++.+. .|-+..++..+..+|.+.|++++|...|++..+.. +-+..+|..+...+.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 345667788888888888888765 24467788888888888888888888888887763 2256777888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHH
Q 041458 219 VHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAE 298 (568)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 298 (568)
+++|...+......... +..............+....+............. ...............+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 88888888888776332 3444444444455555555555555544433222 344445555666667777777777766
Q ss_pred hccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh
Q 041458 299 MDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNE 378 (568)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 378 (568)
..... +.+...+..+...+...|+.++|...+++..+..+. +...+..+...+...|++++|...+++......
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---- 234 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---- 234 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT----
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh----
Confidence 65543 335566777777777778888888877777664322 445566666677777777777776666654322
Q ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 041458 379 GTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLC 458 (568)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 458 (568)
.+...+..+...+.+.|++++|+..|++..+.. +-+..++..+...+.
T Consensus 235 -------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 235 -------------------------------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred -------------------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 134455666777777888888888888777653 224567778888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041458 459 MEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
..|++++|.+.++...... +.+...+..+...+...|++++|++.+++.++.. +.+..++..+..++...|++++|.+
T Consensus 283 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777543 3366777888888888888888888888887641 3356777788888888888888888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhhhcCC
Q 041458 539 VLKELQLRQVVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (568)
.++++++.+|....++..+...|...|+
T Consensus 361 ~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 361 HYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888888888877663
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.7e-21 Score=185.25 Aligned_cols=383 Identities=14% Similarity=0.047 Sum_probs=301.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN 183 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 183 (568)
+...+.+.|++++|++.++++.+..+ -+..++..+..+|.+.|++++|++.|++..+.. |.+..+|..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 56678899999999999999988742 367889999999999999999999999998763 4578899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 184 LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRD 263 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 263 (568)
+++|.+.+....+.. ..+...+..........+....+............. ...............+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 999999999998864 335555555666666666666666666666555333 445555666677788889999888888
Q ss_pred hhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 041458 264 LPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA 343 (568)
Q Consensus 264 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (568)
...... -+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++....+. .+.
T Consensus 161 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 237 (388)
T d1w3ba_ 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred hhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHH
Confidence 776532 256778888899999999999999999987764 44677899999999999999999999999887643 355
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC 423 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 423 (568)
..+..+...+.+.|++++|+..++++++..+. +...|..+...+.
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----------------------------------~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----------------------------------FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------------------------CHHHHHHHHHHHH
Confidence 66777788888889998888888887765321 3455667777788
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
..|+.++|++.++...... +.+...+..+...+...|++++|.+.|++..+..+. +...+..+..+|.+.|++++|.+
T Consensus 283 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777652 446677788888888888888888888888765433 56778888888888999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 041458 504 VFQMMIEKGQMP-NETTYTILVEGIAHQDE 532 (568)
Q Consensus 504 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 532 (568)
.|+++++. .| +..+|..+..++.+.||
T Consensus 361 ~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 361 HYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 99888874 45 56778888888877765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=4.2e-13 Score=124.07 Aligned_cols=228 Identities=13% Similarity=0.027 Sum_probs=146.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 041458 105 LYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNL 184 (568)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 184 (568)
...+.+.|++++|+..|+.+.+..+. +..+|..+..++...|++++|...|++..+.. |-+...|..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 33455566666666666666655321 45555556666666666666666666655432 23455555566666666666
Q ss_pred HHHHHHHHHHHHCCCCC--------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHH
Q 041458 185 NQSLQFLDRLIQKGLVP--------------NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG-KPNLVSYNVLLTGLC 249 (568)
Q Consensus 185 ~~a~~~~~~m~~~~~~~--------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~ 249 (568)
++|.+.+++........ +.......+..+...+...++.+.|.+.+.... ..+...+..+...+.
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 66666666655431110 000011122233445567778888877766532 335667777888888
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 041458 250 KEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALK 329 (568)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 329 (568)
..|++++|+..|++....... +...|..+..+|...|++++|.+.+++..+.. +-+..++..+..+|.+.|++++|++
T Consensus 184 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHH
Confidence 889999999998887765332 56778888888889999999999988887653 3456778888888999999999999
Q ss_pred HHHHHHH
Q 041458 330 VLDEMVK 336 (568)
Q Consensus 330 ~~~~~~~ 336 (568)
.|++.++
T Consensus 262 ~~~~al~ 268 (323)
T d1fcha_ 262 HFLEALN 268 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.6e-13 Score=124.58 Aligned_cols=269 Identities=12% Similarity=0.007 Sum_probs=155.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCCh
Q 041458 245 LTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKT 324 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 324 (568)
...+.+.|++++|...|+++.+..+. +...|..+..+|...|++++|...+.+..+.. +-+...+..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 33445555555555555555544222 34455555555555566666655555554432 22445555555556666666
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHh
Q 041458 325 DHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLG 404 (568)
Q Consensus 325 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 404 (568)
++|.+.++...... |+..................... ..+..+...+...+|...|.+..
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSK------------------RILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhhhcccccch------------------hhHHHHHHhhHHHHHHHHHHHHH
Confidence 66666665555432 11110000000000000000000 00111222234555666666554
Q ss_pred hCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 041458 405 NKQN-SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVD 483 (568)
Q Consensus 405 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 483 (568)
...+ ..+...+..+...+...|++++|+..+++...... -+..+|..+...+...|++++|.+.|++..+.... +..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHH
Confidence 4332 23456677788888889999999999998877532 25677888889999999999999999988875433 677
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHhcCChhHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEK----------GQMPNETTYTILVEGIAHQDELELSA 537 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g~~p~~~~~~~ll~~~~~~g~~~~a~ 537 (568)
.|..+..+|.+.|++++|++.|++.++. ........|..+-.++...|+.+.+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888999999999999999999988762 01112335555666666666665443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=1.6e-09 Score=98.55 Aligned_cols=185 Identities=11% Similarity=0.034 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++.+.........|...+....+.|+.+.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34444444444332333344444444445555555555555555444322212234444455555555555555555555
Q ss_pred HHcCCCCCHhhHHHHHHH-HHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC-CCcC
Q 041458 230 IAKGGKPNLVSYNVLLTG-LCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGD-RSPT 307 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 307 (568)
++.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...+..+.+.|+++.|..+|++..... ..|+
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 444221 22222222221 22234555555555555443 12234455555555555555555555555544332 1221
Q ss_pred --HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 308 --IVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 308 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
...|...+..-...|+.+.+.++++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23455555544555566555555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=3.8e-09 Score=95.91 Aligned_cols=190 Identities=12% Similarity=-0.004 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041458 358 KVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLY 436 (568)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (568)
..+++..++++.++.....+...+.. +......|+.+.|..+|+++....+......|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34677778887776543334444333 66667788888888888888776555455678888898999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC-CC
Q 041458 437 EMTKYGFTPDSYTYSSLIRG-LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG-QM 514 (568)
Q Consensus 437 ~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~ 514 (568)
++.+.+.. +...|...... +...|+.+.|..+|+.+.+.... +...|...++.+...|+++.|..+|++.++.. ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 98876432 34444444433 34468999999999999865333 67889999999999999999999999998853 33
Q ss_pred C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 515 P--NETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 515 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
| ....|...+.--..+|+.+.+.++.+++.+..+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 3 2467888888878899999999999999887765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.1e-09 Score=97.75 Aligned_cols=214 Identities=8% Similarity=0.010 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 041458 276 YNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG-KTDHALKVLDEMVKGRFRPSAASYNPIIARLC 354 (568)
Q Consensus 276 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 354 (568)
++.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..++..++..+. +..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 3344444445555555555555555443 334444455554444443 245555555555443322 3444444444455
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 041458 355 SEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQL 434 (568)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 434 (568)
+.|++++|+..++++ .+..+. +...|..+...+.+.|++++|++.
T Consensus 124 ~l~~~~eAl~~~~ka----------------------------------l~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~ 168 (315)
T d2h6fa1 124 WLRDPSQELEFIADI----------------------------------LNQDAK-NYHAWQHRQWVIQEFKLWDNELQY 168 (315)
T ss_dssp HHTCCTTHHHHHHHH----------------------------------HHHCTT-CHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred hhccHHHHHHHHhhh----------------------------------hhhhhc-chHHHHHHHHHHHHHHhhHHHHHH
Confidence 555555555544444 443333 567788888888999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 041458 435 LYEMTKYGFTPDSYTYSSLIRGLCMEGL------IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMM 508 (568)
Q Consensus 435 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 508 (568)
++++++..+. +...|+.+...+.+.+. +++|.+.+..+.+..+. +...|+.+...+.. ...+++.+.++..
T Consensus 169 ~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~ 245 (315)
T d2h6fa1 169 VDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQL 245 (315)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHH
T ss_pred HHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHH
Confidence 9998886432 56677777666666554 67888888888876544 67777777666544 4467788888877
Q ss_pred HHCCCC-CCHHHHHHHHHHHHh
Q 041458 509 IEKGQM-PNETTYTILVEGIAH 529 (568)
Q Consensus 509 ~~~g~~-p~~~~~~~ll~~~~~ 529 (568)
.+.... .+...+..++..|..
T Consensus 246 ~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 246 LDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHhCCCcCCHHHHHHHHHHHHH
Confidence 764222 245566666666644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.5e-08 Score=94.05 Aligned_cols=264 Identities=14% Similarity=0.049 Sum_probs=168.9
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HhhHHHHHHHH
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPD----VVQATNLLYDLCKANKMKKAIKVMEMMVSSGI-IPD----ASSYTYLVNCL 143 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~ 143 (568)
+...|++++|+..+++.++..+..+ ...+..+...+...|++++|+..|+...+... .++ ...+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4567888888888888877543322 23566677788888888888888887765211 011 23455566677
Q ss_pred HhcCChhhHHHHHHHHHh----CCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHhhHHHHHHH
Q 041458 144 CKKGNVGYAMQLVEKMED----YGYPT---NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL----VPNAFTYSFLLEA 212 (568)
Q Consensus 144 ~~~g~~~~a~~~~~~~~~----~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~ 212 (568)
...|++..+...+..... .+.+. ....+..+...+...|+++.+...+........ ......+......
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 788888888887776543 11111 123455666777888888888888887765321 1223344555566
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC--C--C--CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---ChhHHHHHHHHH
Q 041458 213 AYKERGVHAAMKLLDDIIAKGG--K--P--NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEP---NVVSYNILLRSL 283 (568)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~--~--~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~ 283 (568)
+...++...+...+.+...... . + ....+..+...+...|++++|...++......... ....+..+...+
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 7777888888777776654311 1 1 12334555666777888888888888766543221 233455567778
Q ss_pred HcCCCHHHHHHHHHHhcc----CCCCc-CHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 284 CMEGRWEEANELLAEMDG----GDRSP-TIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
...|++++|...+++... .+..| ...++..+...|...|++++|.+.+++.++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888877642 22222 234566777788888888888888877654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.5e-09 Score=97.14 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=150.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG-KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLC 388 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (568)
.++.+...+.+.+..++|+++++++++.++. +...|+....++...| ++++|+..++.++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al------------------ 105 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAII------------------ 105 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHH------------------
Confidence 4444555555566666666666666654322 3334444444444443 2455555555444
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 468 (568)
+..+. +..+|..+...+.+.|++++|++.++++++... -+...|..+...+.+.|++++|.+
T Consensus 106 ----------------~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~ 167 (315)
T d2h6fa1 106 ----------------EEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQ 167 (315)
T ss_dssp ----------------HHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred ----------------HHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHH
Confidence 43333 667788889999999999999999999998642 267899999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRR------TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
.++.+.+.++. +...|+.+...+.+.+. +++|++.++++++.. +.+...|..+...+.. ...+++.+.++.
T Consensus 168 ~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~ 244 (315)
T d2h6fa1 168 YVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQ 244 (315)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHH
T ss_pred HHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHH
Confidence 99999987655 77888888777776665 578999999988852 4477888777666554 456888899999
Q ss_pred HHHcCCC--CHHHHHHHHHhhh
Q 041458 543 LQLRQVV--SESAVERLVMQYD 562 (568)
Q Consensus 543 ~~~~~~~--~~~~~~~l~~~~~ 562 (568)
..+..+. +...+..++..|.
T Consensus 245 ~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 245 LLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHhCCCcCCHHHHHHHHHHHH
Confidence 9887776 4555566665553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=2.1e-08 Score=92.98 Aligned_cols=271 Identities=12% Similarity=0.032 Sum_probs=189.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCC-CcHHHH
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD----ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYP-TNTVTY 171 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~ 171 (568)
.......+...|++++|++++++..+.....+ ..++..+..+|...|++++|++.|++..+. +.. .....+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33345667899999999999999988642222 235677788999999999999999987642 111 123456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHhh
Q 041458 172 NSLVRGLCMLGNLNQSLQFLDRLIQK----GLVPN---AFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG----KPNLVS 240 (568)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 240 (568)
..+...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+........ ......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 67778888999999999998876542 11111 23455566778889999999999988876532 223345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC----CCCC--ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCc---CHhhH
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSK----GFEP--NVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSP---TIVTY 311 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~ 311 (568)
+......+...++...+...+...... +..+ ....+..+...+...|++++|...+++........ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 556667778889998888888765432 1111 12345566677888999999999999876653222 23455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 312 NILIGSLAYHGKTDHALKVLDEMVK----GRFRPS-AASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 312 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
..+...+...|++++|...++.... .+..|+ ...+..+...|.+.|++++|.+.+++.++
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6678889999999999999988763 232232 34566677788888999999888887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=3.9e-10 Score=104.12 Aligned_cols=231 Identities=8% Similarity=-0.078 Sum_probs=137.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHH-HHHHHHhCCCHHHHHH
Q 041458 322 GKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG--KVDLVVKCLDQMFHRRCKPNEGTYN-GLAMLCGVGKVQEAFA 398 (568)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~ 398 (568)
|.+++|+..++...+.+++ +...|..+..++...+ +++++...+.++....+......+. ....+...+..++|+.
T Consensus 87 ~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH
Confidence 3455566666665554322 4444444444444443 3566666666666553332222222 2345555666777777
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041458 399 IIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY 478 (568)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 478 (568)
.++.+...++. +...|+.+...+.+.|++++|...+.+..+. .|+ ...+...+...+..+++...+........
T Consensus 166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~ 239 (334)
T d1dcea1 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (334)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc
Confidence 77666666544 5666777777777777777765555433321 111 11223334455666667777776665433
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 041458 479 KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLV 558 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 558 (568)
++...+..++..+...|+.++|...+.+..+.. +.+..+|..+..++...|+.++|.++++++++.+|.....+..+.
T Consensus 240 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 240 -EPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp -CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred -chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 245556666677777788888888887776542 224566777777888888888888888888888887776666665
Q ss_pred Hhh
Q 041458 559 MQY 561 (568)
Q Consensus 559 ~~~ 561 (568)
..+
T Consensus 318 ~~~ 320 (334)
T d1dcea1 318 SKF 320 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=3.6e-09 Score=97.44 Aligned_cols=216 Identities=7% Similarity=-0.085 Sum_probs=110.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHhhhCCCCCChhHHH-HHHHHHHcCCCHHHH
Q 041458 216 ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG--RTEEAIRFFRDLPSKGFEPNVVSYN-ILLRSLCMEGRWEEA 292 (568)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a 292 (568)
.|.+++|+..++...... +.+...|..+..++...+ ++++|...+..+...... +...+. .....+...+.+++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHH
Confidence 344667777777777653 235566666666655544 467788777777665222 344443 333556667788888
Q ss_pred HHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 041458 293 NELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
...++.+...+ +-+...|+.+...+.+.|++++|...+....+.. |+ .......+...+..+++...+......
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 88887777765 4467777777777777777776654443322210 00 111222334445555555555555444
Q ss_pred CCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 373 RCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTK 440 (568)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 440 (568)
.+............+...++.++|...+.+....++. +...|..+...+...|+.++|++.+++.++
T Consensus 238 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3222221111122333333444444444443333211 223333344444444444444444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=7e-09 Score=91.57 Aligned_cols=153 Identities=13% Similarity=0.015 Sum_probs=108.5
Q ss_pred cCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 041458 76 DHKLNDAFLQLERMVSKGHKP---DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 152 (568)
..+.+.|+..+++.+...... ....+..+...|.+.|++++|++.|++.++... -++.+|..+..+|.+.|++++|
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHh
Confidence 345567777777776643211 234667778888899999999999999888653 3677888888899999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
++.|+++.+.. |.+..++..+..+|...|++++|.+.|++..+... .+......+...+.+.+..+.+..+......
T Consensus 91 ~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 91 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 99999988763 34567788888888899999999999988887632 2444444444444555555555555444444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=3.4e-08 Score=87.06 Aligned_cols=220 Identities=13% Similarity=-0.011 Sum_probs=139.3
Q ss_pred ChhHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 041458 113 KMKKAIKVMEMMVSSGIIP---DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQ 189 (568)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (568)
+.+.|+.-++++....... ...+|..+..+|.+.|++++|++.|++..+.. |.++.+|+.+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3455666666666542211 23466777788999999999999999988763 4578889999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 041458 190 FLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF 269 (568)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 269 (568)
.|+++.+.... +..++..+..++...|++++|.+.|++.++... .+......+...+.+.+..+.+..+.......
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-- 168 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--
Confidence 99999886432 566788888889999999999999999887732 24444444444455556555555555554443
Q ss_pred CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC--CCc-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 270 EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGD--RSP-TIVTYNILIGSLAYHGKTDHALKVLDEMVKGR 338 (568)
Q Consensus 270 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (568)
.++...++ ++..+.................... ..| ...+|..+...|...|++++|.+.|+..+...
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222222 2333322222222222111111110 011 23456667778888888888888888877653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3.2e-07 Score=68.99 Aligned_cols=106 Identities=11% Similarity=-0.001 Sum_probs=80.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 532 (568)
-...+...|++++|...|++..+..+. +...|..+..+|...|++++|+..+++.++.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 355677778888888888887765544 67778888888888888888888888888753 4477778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 533 LELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 533 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
+++|...+++.++..+.++.....+.+.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888888888877776665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.1e-06 Score=72.70 Aligned_cols=86 Identities=5% Similarity=-0.152 Sum_probs=40.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+...|+++.|++.|.++. .++...|..+...|...|++++|++.|++.++... .+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccH
Confidence 344444555555555554332 12333444445555555555555555555544321 1234444455555555555
Q ss_pred HHHHHHHHHHH
Q 041458 464 EEALEIFVVME 474 (568)
Q Consensus 464 ~~a~~~~~~m~ 474 (568)
++|.+.|++..
T Consensus 87 ~~A~~~~~kAl 97 (192)
T d1hh8a_ 87 DLAIKDLKEAL 97 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=0.00014 Score=63.23 Aligned_cols=224 Identities=13% Similarity=-0.031 Sum_probs=121.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGYAMQLVEKMEDYGYPTNTVTYN 172 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (568)
|+..+..|...+.+.+++++|++.|++..+.| |...+..|...|.. ..+...|...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556666677777788888888888887765 55566666666655 456777777777776654 344444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 041458 173 SLVRGLCM----LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK----ERGVHAAMKLLDDIIAKGGKPNLVSYNVL 244 (568)
Q Consensus 173 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (568)
.+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 44444433 3456677777777666542 2222222222222 33445555555554443 244455555
Q ss_pred HHHHHh----cCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHH
Q 041458 245 LTGLCK----EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIG 316 (568)
Q Consensus 245 l~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (568)
...|.. ..+...+..+++...+.| +......+...|.. ..++++|..+|++..+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 555543 334555555555554433 33444444444433 345666666666655554 3444444555
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 041458 317 SLAY----HGKTDHALKVLDEMVKGR 338 (568)
Q Consensus 317 ~~~~----~g~~~~a~~~~~~~~~~~ 338 (568)
+|.+ ..+.++|.++|++..+.|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5543 224555555555555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=1.8e-06 Score=76.97 Aligned_cols=205 Identities=10% Similarity=0.022 Sum_probs=115.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKG----RFRP-SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLC 388 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (568)
....|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|...+++.... +.
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~--------------~~ 108 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--------------FT 108 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------HH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH--------------hh
Confidence 356677888888888888776542 1111 1245666777777888888887777765432 12
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCC
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC-RKGKTYQAFQLLYEMTKY----GFTPD-SYTYSSLIRGLCMEGL 462 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~ 462 (568)
..|+...+. ..+..+...|. ..|++++|++.+++..+. +..+. ..++..+...+...|+
T Consensus 109 ~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~ 173 (290)
T d1qqea_ 109 HRGQFRRGA---------------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (290)
T ss_dssp HTTCHHHHH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hcccchhHH---------------HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh
Confidence 222222222 22333344443 347777777777665431 11111 2346667777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--c
Q 041458 463 IEEALEIFVVMEEYDYKPDV------DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQM-PN---ETTYTILVEGIAH--Q 530 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~---~~~~~~ll~~~~~--~ 530 (568)
+++|.+.|+++......... ..+...+..+...|+++.|.+.+++..+.... ++ ......++.++.. .
T Consensus 174 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~ 253 (290)
T d1qqea_ 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (290)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCH
Confidence 88888888877653222111 12334455566778888888888877654211 11 2344555666554 2
Q ss_pred CChhHHHHHHHHHHHcC
Q 041458 531 DELELSAEVLKELQLRQ 547 (568)
Q Consensus 531 g~~~~a~~~~~~~~~~~ 547 (568)
+.+++|...++++.+.+
T Consensus 254 e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 254 EQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp TTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 34666766666555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=3.2e-06 Score=69.74 Aligned_cols=127 Identities=11% Similarity=-0.045 Sum_probs=94.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT 498 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 498 (568)
...+...|++++|++.|.++ .+|+..+|..+..+|...|++++|.+.|++..+.+.. +...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 44566778888888888754 3566777888888888888888888888888876544 677888888888888888
Q ss_pred HHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 499 DLSLEVFQMMIEKGQ--------------MPN-ETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 499 ~~a~~~~~~m~~~g~--------------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
++|.+.|++.+.... .++ ..++..+..++.+.|++++|.+.+++..+..+.+
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 888888888775310 011 2455566777888888888888888888877774
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.8e-06 Score=69.03 Aligned_cols=106 Identities=9% Similarity=0.017 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
.+......|.+.|++++|+..|++.++... -+...|..+...|...|++++|...|+++.+.... +...|..++.+|.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence 345556678888888889888888887642 35677888888888888888888888888876544 6678888888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMP-NETTYTIL 523 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l 523 (568)
..|++++|.+.+++.... .| +...+..+
T Consensus 90 ~~g~~~eA~~~~~~a~~~--~p~~~~~~~~l 118 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKV--KPHDKDAKMKY 118 (159)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Confidence 888888888888888875 34 34444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.47 E-value=0.0003 Score=61.10 Aligned_cols=224 Identities=10% Similarity=-0.047 Sum_probs=151.6
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQFLDRLIQKGLVPNAFTYS 207 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 207 (568)
|+..+..|...+...+++++|++.|++..+.| +..++..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45567777777888899999999999998876 66777777777776 568888988888887765 444444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----hcCChHHHHHHHHHhhhCCCCCChhHHHHH
Q 041458 208 FLLEAAYK----ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLC----KEGRTEEAIRFFRDLPSKGFEPNVVSYNIL 279 (568)
Q Consensus 208 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 279 (568)
.+...+.. ..+.+.|...++.....|.. .....+...+. .......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 44444433 46778888888888776543 22222322332 244567777777766553 256667777
Q ss_pred HHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 041458 280 LRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY----HGKTDHALKVLDEMVKGRFRPSAASYNPIIA 351 (568)
Q Consensus 280 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 351 (568)
...|.. ..+...+..+++...+.| +......+...|.. ..+.++|..+|....+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 777765 456777788887777655 55666666666665 467888888888888775 4445555666
Q ss_pred HHHh----cCCHHHHHHHHHHHhhCC
Q 041458 352 RLCS----EGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 352 ~~~~----~~~~~~a~~~~~~~~~~~ 373 (568)
.|.+ ..+.++|.+.|++....|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 6654 336777888887776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=4.3e-07 Score=68.43 Aligned_cols=106 Identities=12% Similarity=0.061 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 041458 451 SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR---TDLSLEVFQMMIEKGQMPN-ETTYTILVEG 526 (568)
Q Consensus 451 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 526 (568)
..+++.+...+++++|.+.|+.....++. +..++..+..++.+.++ .++|+.+++++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 45677777788888888888888776544 67777778887776554 4468888888776432233 2366777788
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSESAVERL 557 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 557 (568)
|.+.|++++|.++++++++.+|.+..+...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 8888888888888888888888876654433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=3.4e-06 Score=75.08 Aligned_cols=163 Identities=15% Similarity=-0.008 Sum_probs=89.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHhhHHHH
Q 041458 140 VNCLCKKGNVGYAMQLVEKMEDY----GYPT-NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK----GL-VPNAFTYSFL 209 (568)
Q Consensus 140 i~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l 209 (568)
...|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++..+. |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34566667777777777665432 1111 1345666777777777777777777765432 10 0012334444
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCh------hHHH
Q 041458 210 LEAAYK-ERGVHAAMKLLDDIIAK----GGKP-NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNV------VSYN 277 (568)
Q Consensus 210 i~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~ 277 (568)
...+.. .|++++|.+.+++..+. +.++ ...++..+...+.+.|++++|++.|+++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444433 47777777777665432 1111 1234556667777777777777777776554221111 1123
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhccC
Q 041458 278 ILLRSLCMEGRWEEANELLAEMDGG 302 (568)
Q Consensus 278 ~l~~~~~~~g~~~~a~~~~~~~~~~ 302 (568)
..+..+...|+++.|...+++..+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344555667777777777776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=4.8e-06 Score=62.26 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=78.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 497 (568)
-...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|...+....+.++. +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 3556778888999999998888763 235677888888888999999999999888876554 78888888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHH
Q 041458 498 TDLSLEVFQMMIEKGQMPN-ETTYT 521 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~-~~~~~ 521 (568)
+++|+..+++..+. .|+ ...+.
T Consensus 87 ~~~A~~~~~~a~~~--~p~~~~~~~ 109 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH--EANNPQLKE 109 (117)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHH
Confidence 99999999998874 453 34433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=0.00059 Score=60.57 Aligned_cols=136 Identities=11% Similarity=0.069 Sum_probs=69.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHH
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLV 175 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 175 (568)
||..-...+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 4444445566666677777777777764432 5566666667777777666655431 556677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG 252 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 252 (568)
..+.+......+ .+.......++.....++..|-..|.++....+++..... ...+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 766666554332 1222223335555556666677777777777666665432 2345555666666666643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=1.8e-06 Score=72.19 Aligned_cols=99 Identities=14% Similarity=-0.096 Sum_probs=84.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 041458 410 SPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALL 489 (568)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 489 (568)
|+...+......+.+.|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|...|+...+..+. +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 456667777888999999999999999988764 336778889999999999999999999999876544 677899999
Q ss_pred HHHHccCChHHHHHHHHHHHH
Q 041458 490 LGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.+|.+.|++++|...|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=8.3e-06 Score=64.96 Aligned_cols=91 Identities=10% Similarity=-0.058 Sum_probs=54.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+.+.|++++|...|++..+.++. +...|..+..+|...|++++|++.|++.++.. +-+..+|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 44555666666666666666655443 45556666666666666666666666666542 11345666666666666666
Q ss_pred HHHHHHHHHHHhC
Q 041458 464 EEALEIFVVMEEY 476 (568)
Q Consensus 464 ~~a~~~~~~m~~~ 476 (568)
++|.+.+++..+.
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=5.5e-06 Score=69.07 Aligned_cols=90 Identities=12% Similarity=-0.105 Sum_probs=80.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGL 462 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 462 (568)
...+.+.|++++|+..|++.....+. +...|..+..+|.+.|++++|+..|++.++. .| +..+|..+..+|...|+
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg~~~~~l~~ 87 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMES 87 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHHHHHHHCCC
Confidence 77889999999999999998887654 7788999999999999999999999999875 45 46789999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 041458 463 IEEALEIFVVMEEY 476 (568)
Q Consensus 463 ~~~a~~~~~~m~~~ 476 (568)
+++|...|+++.+.
T Consensus 88 ~~~A~~~~~~al~l 101 (201)
T d2c2la1 88 YDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.24 E-value=4.9e-06 Score=61.64 Aligned_cols=89 Identities=9% Similarity=0.034 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 532 (568)
+...+.+.|++++|...|++..+..+. +...|..+..++.+.|++++|+..+++.++.. +.+...|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 444555666666666666666654333 55666666666666666666666666666531 2345666666666666666
Q ss_pred hhHHHHHHHHH
Q 041458 533 LELSAEVLKEL 543 (568)
Q Consensus 533 ~~~a~~~~~~~ 543 (568)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=5.4e-06 Score=61.40 Aligned_cols=92 Identities=12% Similarity=-0.012 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 041458 416 KYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS 495 (568)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 495 (568)
-.+...+.+.|++++|+..|++.++.... +..+|..+..++.+.|++++|...|++..+..+. +...|..+...|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHC
Confidence 34566777888888888888888876322 5778888888888899999999999888876544 678888888888899
Q ss_pred CChHHHHHHHHHHH
Q 041458 496 RRTDLSLEVFQMMI 509 (568)
Q Consensus 496 g~~~~a~~~~~~m~ 509 (568)
|+.++|.+.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999988888754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=2.3e-05 Score=63.00 Aligned_cols=97 Identities=14% Similarity=-0.004 Sum_probs=62.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC-------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFT-PD-------------SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK 479 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (568)
.+......+.+.|++++|+..|.+.++.-.. +. ..+|+.+..+|.+.|++++|...++...+..+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 4455666788889999999999888764111 11 123445556666667777777777666655433
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 480 PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 480 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
+...|..+..+|...|++++|...|+++.+.
T Consensus 95 -~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 95 -NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 5666666666677777777777777776663
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=9.8e-06 Score=60.73 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 041458 416 KYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL---IEEALEIFVVMEEYDYKPD-VDNFNALLLG 491 (568)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~ 491 (568)
..++..+...+++++|.+.|++..+.+ +.+..++..+..++.+.++ +++|.++++++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777888889999999999988864 3366788888888877554 4569999998887654443 3467888999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHH
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETT 519 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 519 (568)
|.+.|++++|.+.|+++++. .|+..-
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHH
Confidence 99999999999999999984 565443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.08 E-value=9.3e-05 Score=58.05 Aligned_cols=125 Identities=10% Similarity=-0.077 Sum_probs=83.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
.+..-...+.+.|++.+|+..|.+.++.- |....+ .-.... ..... ....+|..+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~~-----------~~~~~~---~~~~~----~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEW-----------DDQILL---DKKKN----IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTC-----------CCHHHH---HHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhhh-----------hhHHHH---Hhhhh----HHHHHHhhHHHHHH
Confidence 34555666777777777777777776531 110000 000000 00000 02346677888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVM 559 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 559 (568)
+.|++++|++.++++++.+ +.+..+|..+..++...|++++|...+++.++.+|.+..+...+..
T Consensus 79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999988852 4477888889999999999999999999999999888877665544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=9.1e-05 Score=59.32 Aligned_cols=60 Identities=8% Similarity=-0.143 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 416 KYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
+.+..+|.+.|++++|+..+++.++... .+..++..+..+|...|++++|...|+...+.
T Consensus 66 ~nla~~y~k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 66 LNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccchhhhhhhccc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3344445555555555555555554321 13445555555555555555555555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=6.6e-05 Score=56.84 Aligned_cols=95 Identities=7% Similarity=0.004 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-----hhhHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK-PD-----VDNFNAL 488 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~-----~~~~~~l 488 (568)
+..+...+.+.|++++|+..|.+.++.+. .+...+..+..+|.+.|++++|.+.++++.+.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34455556666666666666666665432 24555666666666666666666666665532111 00 1234445
Q ss_pred HHHHHccCChHHHHHHHHHHHH
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~ 510 (568)
...+...+++++|++.|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 5555555666666666655554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.88 E-value=0.00019 Score=56.18 Aligned_cols=116 Identities=9% Similarity=-0.086 Sum_probs=81.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+.+.|++.+|...|.+....-...... .+.... ..... ....+|+.+..+|.+.|++
T Consensus 24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~--------------~~~~~~--~~~~~----~~~~~~~Nla~~~~~l~~~ 83 (153)
T d2fbna1 24 GNEFFKKNEINEAIVKYKEALDFFIHTEEW--------------DDQILL--DKKKN----IEISCNLNLATCYNKNKDY 83 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCTTC--------------CCHHHH--HHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcchhhh--------------hhHHHH--Hhhhh----HHHHHHhhHHHHHHHhccc
Confidence 567889999999999999877542211100 000000 00000 1224677888899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN-ETTYTI 522 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 522 (568)
++|++.++...+..+. +..+|..+..++...|++++|...|++..+. .|+ ..+...
T Consensus 84 ~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~ 140 (153)
T d2fbna1 84 PKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNS 140 (153)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred chhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999998876544 7889999999999999999999999999984 554 444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=9.7e-05 Score=55.87 Aligned_cols=99 Identities=10% Similarity=0.066 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC-----HHHHHHH
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ-MPN-----ETTYTIL 523 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-----~~~~~~l 523 (568)
+..+...+...|++++|.+.|.+..+.++. +...|..+..+|.+.|++++|++.++++++... .+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 445667778888888888888888776544 677788888888888888888888888776310 011 2466677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
...+...+++++|.+++++.+.....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 77888888888888888887776544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.00016 Score=57.78 Aligned_cols=79 Identities=11% Similarity=-0.027 Sum_probs=60.7
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
+...|..+..++.+.|++++|+..++++++.. +.+..+|..+..++...|++++|.+.++++++.++.+..+...+...
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34456667778888888888888888888752 44677888888888888888888888888888888877766665544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.0096 Score=52.53 Aligned_cols=136 Identities=12% Similarity=0.049 Sum_probs=69.4
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041458 131 PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLL 210 (568)
Q Consensus 131 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 210 (568)
||..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 3444444556666677777777777765543 5566677777777777777665441 556777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCC
Q 041458 211 EAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEG 287 (568)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 287 (568)
..+.+......+ .+.......+......++..|-..|.+++...+++..... -.++...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 766666554432 1112222234444455666666666667666666655432 1335555666666666543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=1.1e-05 Score=77.82 Aligned_cols=226 Identities=9% Similarity=-0.019 Sum_probs=102.1
Q ss_pred HHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 291 EANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAA-SYNPIIARLCSEGKVDLVVKCLDQM 369 (568)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~ 369 (568)
+|.+.|++..+.. +.....+..+..++...|++++| |++++..+ |+.. ..+ +....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~--~e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKK--VEQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHT--HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHh--HHHHHHHHHHHHHHHHHHHh
Confidence 5677777765532 12234555666677777777665 55554431 1110 011 11111011134455555555
Q ss_pred hhCCCCCChhhHHH-HH--HHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 041458 370 FHRRCKPNEGTYNG-LA--MLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD 446 (568)
Q Consensus 370 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 446 (568)
.+....++...... +. .....+.++.++..+....... .++...+..+...+.+.|+.++|...+...... .|
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~- 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC- 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--HH-
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-
Confidence 54433333322222 11 1112333444444333332221 123344555666666777777777666655432 11
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
..++..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|...|.+.+... +|-..++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 235566677777777777777777777765433 55677777777777777777777777777642 4566666666666
Q ss_pred HHhc
Q 041458 527 IAHQ 530 (568)
Q Consensus 527 ~~~~ 530 (568)
+.+.
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.74 E-value=0.00082 Score=53.38 Aligned_cols=132 Identities=11% Similarity=-0.011 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCh-----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKY---GFTPDS-----------YTYSSLIRGLCMEGLIEEALEIFVVMEEYD 477 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 477 (568)
...+......+.+.|++.+|+..|.+.+.. ...++. .+|+.+..+|.+.|++++|+..++...+..
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 345666777888899999999999877642 111111 124445666777888888888888777654
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 041458 478 YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDEL-ELSAEVLKELQL 545 (568)
Q Consensus 478 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 545 (568)
+. +...|..+..+|...|++++|.+.|+++++.. +.+..+...+-......+.. +...+.+.+|.+
T Consensus 95 p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 95 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 43 67777777778888888888888888877742 23444444444333333322 234455555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.74 E-value=0.00066 Score=53.97 Aligned_cols=58 Identities=9% Similarity=-0.068 Sum_probs=30.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
+..+|.+.|++++|+..+++.++.. +.+..+|..+..++...|++++|.+.|+.+.+.
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444555555555555555555432 223445555555555555555555555555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=1.2e-05 Score=77.45 Aligned_cols=226 Identities=11% Similarity=0.001 Sum_probs=127.6
Q ss_pred HHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH-hhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 256 EAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI-VTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 256 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
+|.+.|++..+. +|+ ...+..+..++...|++++| ++++...+ |+. ...+... ..-...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~--~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ--DLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH--HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH--HHHHHHHHHHHHHHHH
Confidence 688889888764 344 44566677778888888776 66665432 211 1111111 1111224566777777
Q ss_pred HHHCCCCCCcccHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 041458 334 MVKGRFRPSAASYNPIIARL--CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP 411 (568)
Q Consensus 334 ~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (568)
..+....++..-.......+ ...+.++.++..+....+..+.......+....+.+.|+.++|...+....... .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 76654344443333222222 233455555555554443332222233333667778889999988877655431 2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
..++..+...+...|++++|+..|.+..+. .| +...|+.|...+...|+..+|...|.+..... +|-..++..|..
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 356778889999999999999999999986 44 45799999999999999999999999998754 457788888888
Q ss_pred HHHccC
Q 041458 491 GLCKSR 496 (568)
Q Consensus 491 ~~~~~g 496 (568)
.+.+..
T Consensus 229 ~~~~~~ 234 (497)
T d1ya0a1 229 ALSKAL 234 (497)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 776544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.70 E-value=0.00029 Score=56.26 Aligned_cols=79 Identities=10% Similarity=-0.053 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
...|..+..++.+.|++++|+..++...+..+. +...|..+..+|...|++++|++.|+++++.. +.+..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345677888899999999999999999987654 78899999999999999999999999999852 3355555555444
Q ss_pred H
Q 041458 527 I 527 (568)
Q Consensus 527 ~ 527 (568)
.
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.69 E-value=0.00081 Score=53.89 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE-----KGQMPNETTY 520 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 520 (568)
.+..+...+...|++++|...++.+.+..+. +...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 4566677777777777777777777765444 677777777777777777777777777643 4777776553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.59 E-value=4.6e-05 Score=65.76 Aligned_cols=127 Identities=17% Similarity=0.068 Sum_probs=76.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
.+.|++++|+..+++.++... -|...+..+...++..|++++|.+.++...+..+. +...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 456888888888888877632 25677888888888888888888888888765322 3444444444443333333222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 503 EVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 503 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
.-.......+-+++...+......+...|+.++|.+.++++.+..+..+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2111111111112234444455667778888888888888888776643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.53 E-value=0.00019 Score=55.55 Aligned_cols=114 Identities=18% Similarity=0.057 Sum_probs=64.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME----------GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
+.+.+++|++.|+...+.. +.+..++..+..+|... +.+++|.+.|++..+..+. +..+|..+..+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence 4445666666666666542 22344555555555432 3446677777777665444 5666776766665
Q ss_pred ccC-----------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 494 KSR-----------RTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 494 ~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
..| .+++|.+.|++.++ +.|+...+..-+..+ .+|.+++.++.+.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 543 25677777777776 356655555444444 23455555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.52 E-value=0.0018 Score=51.81 Aligned_cols=129 Identities=10% Similarity=-0.055 Sum_probs=89.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 041458 417 YVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR 496 (568)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 496 (568)
.........|++++|.+.|.+.... .+.... ......+-+...-..+... ....+..+...+...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE--WRGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 3445677889999999999988864 111110 0000000011111112211 3456788899999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCHHHHHHHHHh
Q 041458 497 RTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ-----LRQVVSESAVERLVMQ 560 (568)
Q Consensus 497 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~l~~~ 560 (568)
++++|+..++++++.. +-+...|..++.++...|+.++|.+.|+++. +.|..|......+...
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~ 149 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 149 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 9999999999999852 4588999999999999999999999999974 4688877666665444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.47 E-value=9.9e-05 Score=63.61 Aligned_cols=121 Identities=10% Similarity=0.017 Sum_probs=72.7
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChhhH
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD-ASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a 152 (568)
.+.|++++|+..+++.++.. +.|...+..+...++..|++++|.+.++...+.. |+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence 46788888888888888874 4478888888888888888988888888888753 33 33344343333322222221
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK 197 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (568)
..-.......+-+++...+......+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110001111223333444455666777777777777777654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00054 Score=48.28 Aligned_cols=78 Identities=10% Similarity=-0.050 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEK-----GQMPN-ETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVER 556 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 556 (568)
..+-.+...+.+.|++++|+..|++.++. ...++ ..++..+..++.+.|++++|...++++++.+|.++.+..+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34445667777777888887777777652 11122 4667778888888888888888888888888888887777
Q ss_pred HHHh
Q 041458 557 LVMQ 560 (568)
Q Consensus 557 l~~~ 560 (568)
+...
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.28 E-value=0.0005 Score=53.01 Aligned_cols=102 Identities=11% Similarity=-0.014 Sum_probs=81.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 457 LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS----------RRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
|-+.+.+++|.+.|+...+..+. +...+..+..+|... +.+++|++.++++++.+ +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 44567799999999999987655 788888888888743 45678999999999852 4477889888888
Q ss_pred HHhcCC-----------hhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 527 IAHQDE-----------LELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 527 ~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
|...|+ +++|.+.+++.++.+|.+......|...
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 876553 6889999999999999988877776544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.97 E-value=0.0058 Score=47.47 Aligned_cols=64 Identities=9% Similarity=-0.088 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEK-----GQMPN-----ETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
..|+.+..+|...|++++|.+.+++.++. ...++ ...+..+..+|...|++++|.+.+++.++.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666665531 11111 123455666777777777777777776554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.89 E-value=0.0073 Score=46.90 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=70.5
Q ss_pred hHHHH--HHHHHhcCChhHHHHHHHHHHHCCC-CCC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 041458 414 FYKYV--ITSLCRKGKTYQAFQLLYEMTKYGF-TPD----------SYTYSSLIRGLCMEGLIEEALEIFVVMEEY---- 476 (568)
Q Consensus 414 ~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---- 476 (568)
.|..+ ...+...|++++|++.|++.++... .|+ ...|+.+..+|...|++++|.+.+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 4455677899999999988875311 111 356788899999999999999999887642
Q ss_pred -CCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 477 -DYKPD-----VDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 477 -~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
...++ ...++.+..+|...|++++|++.|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 22467788999999999999999999875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.64 E-value=0.041 Score=40.94 Aligned_cols=112 Identities=7% Similarity=-0.068 Sum_probs=65.8
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK----SRRTDLSL 502 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 502 (568)
+.++|++.|++..+.|. ......|. .....+.++|.+++++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45666666666666542 22222222 233456777777777777654 44555555555543 34567788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 041458 503 EVFQMMIEKGQMPNETTYTILVEGIAH----QDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 503 ~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~ 549 (568)
++|++..+.| +......|...|.. ..+.++|.+++++..+.|..
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 8888877765 33344445445544 35677788888887776643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.51 E-value=0.053 Score=40.33 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=7.8
Q ss_pred ChHHHHHHHHHHHhCC
Q 041458 78 KLNDAFLQLERMVSKG 93 (568)
Q Consensus 78 ~~~~A~~~~~~~~~~~ 93 (568)
++++|+..|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4445555555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.017 Score=40.09 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=50.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCC-HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSG-----IIPD-ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVT 170 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 170 (568)
+...+..+...+.+.|+++.|+..|++..+.. ..++ ..++..+..++.+.|++++|++.++++.+.. |-+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 34445567778888888888888888776531 1111 3467777777788888888888888777653 234444
Q ss_pred HHHH
Q 041458 171 YNSL 174 (568)
Q Consensus 171 ~~~l 174 (568)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.17 E-value=0.32 Score=34.51 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=74.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 259 (568)
-.|..++..+++.+.... .+..-||.+|.-....-+-+...+.++.+-.. -|. ..++++.....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence 345566666666655542 14445555555555555544444444443221 011 12333333333
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 260 FFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF 339 (568)
Q Consensus 260 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (568)
.+-.+-. +......-++...++|+-++-.+++..+.+.+ ++++.....+..+|.+.|...++.+++.+.-+.|.
T Consensus 78 C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3333221 33444555666677777777777777765544 56666667777777777777777777777776664
Q ss_pred C
Q 041458 340 R 340 (568)
Q Consensus 340 ~ 340 (568)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.93 E-value=0.2 Score=35.99 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=47.9
Q ss_pred CCChhhHHHHHHHHHccC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHH
Q 041458 479 KPDVDNFNALLLGLCKSR---RTDLSLEVFQMMIEKGQMPNE-TTYTILVEGIAHQDELELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 553 (568)
.|...+--....++.+.. +.++++.++++..+.+ +.+. ..+-.|.-+|.+.|++++|.++++++++..|.+..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 345555555566666554 3457777777777642 2233 455566677778888888888888888888776655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.29 E-value=0.57 Score=33.25 Aligned_cols=68 Identities=10% Similarity=0.033 Sum_probs=56.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+...++..++.+...|+-+.-.++++.+.+. -+|++.....+..+|.+-|...++.+++.++-+.|..
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 4566677788888999999999998887775 4788888889999999999999999999999988865
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.70 E-value=0.87 Score=30.51 Aligned_cols=56 Identities=4% Similarity=0.054 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHH
Q 041458 500 LSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVE 555 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 555 (568)
++.+-++.+...++.|++.+..+.+++|++.+++..|.++++-+..+-......+.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~ 79 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYP 79 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45555555555666677777777777777777777777777766655443333333
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.43 E-value=0.89 Score=32.42 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=42.7
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 445 PDSYTYSSLIRGLCMEG---LIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 445 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
|...|--...+++.+.. +.++|+.+++.+.+.+..-....+..|.-+|.+.|++++|.+.++.+++ +.|+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 44445455556666543 3456777777776533211124555666677777788888887777777 35543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.19 E-value=11 Score=33.76 Aligned_cols=348 Identities=13% Similarity=0.076 Sum_probs=156.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 041458 140 VNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGV 219 (568)
Q Consensus 140 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 219 (568)
+..+.+.++....++.+. ..+.+...-.....+....|+.++|.+.+..+-..|.. .+....
T Consensus 79 l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~------------ 140 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACD------------ 140 (450)
T ss_dssp HHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHH------------
T ss_pred HHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHH------------
Confidence 445556666544333221 12344544445666677777777777776666544322 222222
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 220 HAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
.+|..+...|. .+...+-.-+......|+...|..+...+... ........+....+.... .......
T Consensus 141 ----~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~---~~~~~~~ 208 (450)
T d1qsaa1 141 ----KLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTV---LTFARTT 208 (450)
T ss_dssp ----HHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGH---HHHHHHS
T ss_pred ----HHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhH---HHHHhcC
Confidence 23333333222 23333333344445556666666666544322 222333333333222221 1111111
Q ss_pred ccCCCCcCHhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCcccHHHHHH----HHHhcCCHHHHHHHHHHHhhCC
Q 041458 300 DGGDRSPTIVTYNILIGSLAY--HGKTDHALKVLDEMVKGRFRPSAASYNPIIA----RLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
..+......+..++.+ ..+.+.+..++......... +..-+..+-. .....+..+.+...+.......
T Consensus 209 -----~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 282 (450)
T d1qsaa1 209 -----GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (450)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred -----CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc
Confidence 1122222222222222 23556666666655443211 1111111111 1223445555666655555443
Q ss_pred CCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 041458 374 CKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSL 453 (568)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 453 (568)
.......+. +......++...+...|..+...... ...-.--+..++...|+.++|...|..... .+ +|-..
T Consensus 283 ~~~~~~~w~-~~~al~~~~~~~~~~~~~~l~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~---~fYG~ 354 (450)
T d1qsaa1 283 QSTSLIERR-VRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ---QR---GFYPM 354 (450)
T ss_dssp CCHHHHHHH-HHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SC---SHHHH
T ss_pred cchHHHHHH-HHHHHHcCChHHHHHHHHhcCccccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CC---ChHHH
Confidence 222221111 22334456667777776666432111 111112244666677777777777776653 12 23333
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCC-Chhh-----HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 454 IRGLCMEGL-IEEALEIFVVMEEYDYKP-DVDN-----FNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 454 ~~~~~~~g~-~~~a~~~~~~m~~~~~~p-~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
+.+-. .|. +. +....+.. .... -...+..+...|....|...+..+... .+......+...
T Consensus 355 LAa~~-Lg~~~~--------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~l 422 (450)
T d1qsaa1 355 VAAQR-IGEEYE--------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARY 422 (450)
T ss_dssp HHHHH-TTCCCC--------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred HHHHH-cCCCCC--------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 22211 111 00 00000000 0000 112345667788888888888877753 245556667777
Q ss_pred HHhcCChhHHHHHHHHH
Q 041458 527 IAHQDELELSAEVLKEL 543 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~ 543 (568)
..+.|.++.|+....+.
T Consensus 423 A~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 423 AFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHCCChhHHHHHHHHH
Confidence 78888888888766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.26 E-value=4.7 Score=26.90 Aligned_cols=45 Identities=9% Similarity=0.160 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (568)
+..+-++.+....+.|++....+.+++|-+.+++..|.++|+..+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444455555555555555555444444
|