Citrus Sinensis ID: 041466
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | 2.2.26 [Sep-21-2011] | |||||||
| P54278 | 862 | Mismatch repair endonucle | yes | no | 0.334 | 0.320 | 0.416 | 5e-55 | |
| P54279 | 859 | Mismatch repair endonucle | yes | no | 0.296 | 0.284 | 0.434 | 5e-55 | |
| Q54QA0 | 1022 | Mismatch repair endonucle | yes | no | 0.279 | 0.225 | 0.453 | 2e-50 | |
| P54280 | 794 | DNA mismatch repair prote | yes | no | 0.230 | 0.239 | 0.472 | 4e-47 | |
| P14242 | 873 | DNA mismatch repair prote | yes | no | 0.230 | 0.217 | 0.450 | 5e-44 | |
| Q0STR3 | 674 | DNA mismatch repair prote | yes | no | 0.219 | 0.268 | 0.316 | 2e-22 | |
| C1FNT8 | 666 | DNA mismatch repair prote | yes | no | 0.205 | 0.253 | 0.322 | 6e-22 | |
| C3KX34 | 666 | DNA mismatch repair prote | yes | no | 0.205 | 0.253 | 0.322 | 2e-21 | |
| A7GE44 | 666 | DNA mismatch repair prote | yes | no | 0.203 | 0.252 | 0.326 | 2e-21 | |
| Q8XL86 | 674 | DNA mismatch repair prote | yes | no | 0.218 | 0.267 | 0.315 | 2e-21 |
| >sp|P54278|PMS2_HUMAN Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2 | Back alignment and function desciption |
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Score = 216 bits (551), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 183/319 (57%), Gaps = 43/319 (13%)
Query: 501 IVSSSNDLKK--NSEDLSVAASHLQFSGSILDAPVPSSSLDICSTLQFSIQDLRKRRQQR 558
I+SSS+ +K N++D+S AS + + I VP L FS+ L KR +Q
Sbjct: 584 ILSSSDICQKLVNTQDMS--ASQVDVAVKINKKVVP---------LDFSMSSLAKRIKQ- 631
Query: 559 LSIMQSSCHTSGSVKMRRCFAAATLELSQPENEERKARALAAATTELERLFRKEDFGRMK 618
+ + + G R+ A ++ EN+ AA EL + K F M+
Sbjct: 632 --LHHEAQQSEGEQNYRKFRA----KICPGENQ--------AAEDELRKEISKTMFAEME 677
Query: 619 VIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQSTVLNQQPLLRPLKLDLTPEEEV 678
+IGQFNLGFII KL++D+FIVDQHA DEKYNFE L Q TVL Q L+ P L+LT E
Sbjct: 678 IIGQFNLGFIITKLNEDIFIVDQHATDEKYNFEMLQQHTVLQGQRLIAPQTLNLTAVNEA 737
Query: 679 VASMHMDIIRKNGFSLEEDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLADNQGEC 738
V +++I RKNGF D +A R +L ++P SK TFG +DV +LI L+D+ G
Sbjct: 738 VLIENLEIFRKNGFDFVIDENAPVTERAKLISLPTSKNWTFGPQDVDELIFMLSDSPG-- 795
Query: 739 SIISSYKMDTADSVC-PSRVRAMLASRACRSSIMIGDALGRNEMQKILEHLADLNSPWNC 797
+C PSRV+ M ASRACR S+MIG AL +EM+K++ H+ +++ PWNC
Sbjct: 796 ------------VMCRPSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNC 843
Query: 798 PHGRPTMRHLVDLTTIRKN 816
PHGRPTMRH+ +L I +N
Sbjct: 844 PHGRPTMRHIANLGVISQN 862
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Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MLH1 to form MutL alpha. DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of PMS2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MulL alpha (MLH1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 1EC: .EC: -EC: .EC: - |
| >sp|P54279|PMS2_MOUSE Mismatch repair endonuclease PMS2 OS=Mus musculus GN=Pms2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q54QA0|PMS1_DICDI Mismatch repair endonuclease pms1 OS=Dictyostelium discoideum GN=pms1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P54280|PMS1_SCHPO DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pms1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P14242|PMS1_YEAST DNA mismatch repair protein PMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PMS1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q0STR3|MUTL_CLOPS DNA mismatch repair protein MutL OS=Clostridium perfringens (strain SM101 / Type A) GN=mutL PE=3 SV=1 | Back alignment and function description |
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| >sp|C1FNT8|MUTL_CLOBJ DNA mismatch repair protein MutL OS=Clostridium botulinum (strain Kyoto / Type A2) GN=mutL PE=3 SV=1 | Back alignment and function description |
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| >sp|C3KX34|MUTL_CLOB6 DNA mismatch repair protein MutL OS=Clostridium botulinum (strain 657 / Type Ba4) GN=mutL PE=3 SV=1 | Back alignment and function description |
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| >sp|A7GE44|MUTL_CLOBL DNA mismatch repair protein MutL OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=mutL PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8XL86|MUTL_CLOPE DNA mismatch repair protein MutL OS=Clostridium perfringens (strain 13 / Type A) GN=mutL PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | ||||||
| 147768838 | 3804 | hypothetical protein VITISV_023640 [Viti | 0.985 | 0.213 | 0.589 | 0.0 | |
| 255564118 | 924 | DNA mismatch repair protein pms2, putati | 0.894 | 0.797 | 0.644 | 0.0 | |
| 224131150 | 915 | predicted protein [Populus trichocarpa] | 0.890 | 0.802 | 0.626 | 0.0 | |
| 225437328 | 937 | PREDICTED: mismatch repair endonuclease | 0.867 | 0.763 | 0.609 | 0.0 | |
| 356502864 | 1036 | PREDICTED: mismatch repair endonuclease | 0.882 | 0.701 | 0.573 | 0.0 | |
| 356536725 | 944 | PREDICTED: mismatch repair endonuclease | 0.873 | 0.762 | 0.561 | 0.0 | |
| 357442547 | 933 | DNA mismatch repair protein [Medicago tr | 0.864 | 0.763 | 0.554 | 0.0 | |
| 449436509 | 921 | PREDICTED: mismatch repair endonuclease | 0.882 | 0.789 | 0.563 | 0.0 | |
| 18411951 | 923 | DNA mismatch repair protein PMS2 [Arabid | 0.844 | 0.754 | 0.546 | 0.0 | |
| 297809903 | 923 | hypothetical protein ARALYDRAFT_490319 [ | 0.855 | 0.763 | 0.548 | 0.0 |
| >gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/902 (58%), Positives = 630/902 (69%), Gaps = 90/902 (9%)
Query: 1 MDVETPTNSPTIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGE 60
M+ + SPTIR INKG VHRIC+GQVI DLSSAVKELVENSLDAGATSIEIALKEYG+
Sbjct: 2757 MEGAAQSESPTIRAINKGAVHRICSGQVILDLSSAVKELVENSLDAGATSIEIALKEYGQ 2816
Query: 61 EWFQVVDNGCGISPNNFKVRAV-------------------------------------- 82
EWFQV+DNGCGI PNNFK+ V
Sbjct: 2817 EWFQVIDNGCGIXPNNFKLTMVDMMIVVGWKSWNLEVVELDGDGAGVILRLQYWEAGKDR 2876
Query: 83 -----FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLE 137
+ +AYALIA GVR VCTNTTGKNVKS+VLKTQGS SLKDNIITVFGMN +NCLE
Sbjct: 2877 GGGRVAMVEAYALIAGGVRLVCTNTTGKNVKSMVLKTQGSGSLKDNIITVFGMNTFNCLE 2936
Query: 138 PVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSRQ 197
P+ IC SDS KV+GF+SK G GSGR LGDRQ+FFVN RPVD+PKV KLVNELYKGANSRQ
Sbjct: 2937 PLNICLSDSSKVDGFVSKSGYGSGRTLGDRQFFFVNGRPVDMPKVGKLVNELYKGANSRQ 2996
Query: 198 YPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIYSPNNASYSVNKVEQ 257
YPIAIMNF VPTRA DVNVTPDKRK+FFSDE SILH+LREGL++IYSP+ SYSVN+ E+
Sbjct: 2997 YPIAIMNFTVPTRAYDVNVTPDKRKIFFSDEGSILHSLREGLEKIYSPSLTSYSVNRFEE 3056
Query: 258 LIEPEKSGPSSGAESCMFL--EQLSPDGNGCI-EILNEQQISKGNTP-KTVEVDTLHSDA 313
E + + ++ + +QL PDG+ E +E+QI++ P K V+ T + A
Sbjct: 3057 PTEETBNSELNPPQTQILXSSKQLFPDGSDLQEEAHSEEQITEDQIPSKMVKSSTENMHA 3116
Query: 314 LEGLVHSSNENG-KGNFTLKAHDDKSADRLSKFNCMKLIGPHNVPT-EENCPSPSRVMAK 371
++ + HS +++ + +F+L+ H K AD K++ K N T + S S ++ K
Sbjct: 3117 VKEMDHSYDKDSIEKDFSLRVHGIKKADSFPKWDSEKTTMTINSDTIDHQVLSLSEMVVK 3176
Query: 372 NITEDGESDSRSRCIQS---------------SLNKFVTVSKRKYESIARPLTEMPLLRN 416
+ S S S IQS SL+KFVTV+KRK+E+I+ L+E PLLRN
Sbjct: 3177 GAVGNKGSSSHSSYIQSFGNKGSSSHSSYFQSSLSKFVTVNKRKHENISTVLSEAPLLRN 3236
Query: 417 QSLHCQMKKSNSDMDAVDTRSPVRRHLVDDIAKLNKIEPFKCNKADKVSKEIENILSSEG 476
Q+ +CQ+KK+NS+M A+ +RS V +D A + + EP K D EN S G
Sbjct: 3237 QTPNCQLKKNNSEMHALVSRSFVNHQKTNDSAGIIESEPSKFLGVDSAFDATENPHYSGG 3296
Query: 477 NTN-EKPREELVTQEKATPLLNVPSIVSSSNDLKKNSEDLSVAASHLQFSGSILDAPVPS 535
N N EK E+L E P +V + S S + KN DLS AS +Q + +LD P+PS
Sbjct: 3297 NINDEKAGEDLENHETPLPPADVATTASLSEE--KNISDLSXVASAVQDT-PVLDTPMPS 3353
Query: 536 SSLDICSTLQFSIQDLRKRRQQRLSIMQSSCHTSGSVKMRRCFAAATLELSQPENEERKA 595
S L ICSTLQFS ++LR RR QRLS +QSS + G RC++AATLE SQPENEERK
Sbjct: 3354 SDLKICSTLQFSFEELRTRRHQRLSRLQSSSYKCGRTTTERCYSAATLEFSQPENEERKV 3413
Query: 596 RALAAATTELERLFRKEDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQ 655
RALAAATTELE+LF+K+DFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFE L+Q
Sbjct: 3414 RALAAATTELEKLFKKQDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEHLAQ 3473
Query: 656 STVLNQQPLLR----------------------PLKLDLTPEEEVVASMHMDIIRKNGFS 693
STVLNQQPLLR PL+LDL+PEEEV+A +HMDIIRKNGF+
Sbjct: 3474 STVLNQQPLLRYGVQNIHEVTSIELLCVSYTIGPLRLDLSPEEEVIAFIHMDIIRKNGFA 3533
Query: 694 LEEDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVC 753
LEED HA G RF+LKAVPFSK ITFGVEDVK+LISTLAD QGECSI+ +YKMDT DS+C
Sbjct: 3534 LEEDLHAPPGQRFKLKAVPFSKNITFGVEDVKELISTLADGQGECSILGTYKMDTCDSIC 3593
Query: 754 PSRVRAMLASRACRSSIMIGDALGRNEMQKILEHLADLNSPWNCPHGRPTMRHLVDLTTI 813
PSRVRAMLASRACRSS+MIGD LGR EMQ+ILEHL+DL SPWNCPHGRPTMRHLVDLTTI
Sbjct: 3594 PSRVRAMLASRACRSSVMIGDPLGRKEMQRILEHLSDLKSPWNCPHGRPTMRHLVDLTTI 3653
Query: 814 RK 815
K
Sbjct: 3654 YK 3655
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564118|ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis] gi|223537618|gb|EEF39241.1| DNA mismatch repair protein pms2, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224131150|ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225437328|ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356502864|ref|XP_003520235.1| PREDICTED: mismatch repair endonuclease PMS2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356536725|ref|XP_003536886.1| PREDICTED: mismatch repair endonuclease PMS2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357442547|ref|XP_003591551.1| DNA mismatch repair protein [Medicago truncatula] gi|355480599|gb|AES61802.1| DNA mismatch repair protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449436509|ref|XP_004136035.1| PREDICTED: mismatch repair endonuclease PMS2-like [Cucumis sativus] gi|449498483|ref|XP_004160549.1| PREDICTED: mismatch repair endonuclease PMS2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|18411951|ref|NP_567236.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gi|15617225|gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gi|332656775|gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297809903|ref|XP_002872835.1| hypothetical protein ARALYDRAFT_490319 [Arabidopsis lyrata subsp. lyrata] gi|297318672|gb|EFH49094.1| hypothetical protein ARALYDRAFT_490319 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | ||||||
| UNIPROTKB|Q69L72 | 923 | OSJNBa0016G10.12 "Os02g0592300 | 0.865 | 0.772 | 0.448 | 1.3e-180 | |
| TAIR|locus:2133274 | 923 | PMS1 "POSTMEIOTIC SEGREGATION | 0.547 | 0.488 | 0.520 | 6e-146 | |
| UNIPROTKB|F1PNU2 | 897 | PMS2 "Uncharacterized protein" | 0.233 | 0.214 | 0.497 | 1.1e-90 | |
| UNIPROTKB|P54278 | 862 | PMS2 "Mismatch repair endonucl | 0.233 | 0.222 | 0.502 | 1.1e-90 | |
| FB|FBgn0011660 | 899 | Pms2 "Pms2" [Drosophila melano | 0.237 | 0.218 | 0.514 | 1.2e-90 | |
| UNIPROTKB|F1PNW0 | 866 | PMS2 "Uncharacterized protein" | 0.233 | 0.221 | 0.497 | 1.3e-90 | |
| ZFIN|ZDB-GENE-030131-686 | 851 | pms2 "PMS2 postmeiotic segrega | 0.489 | 0.473 | 0.353 | 1.4e-88 | |
| UNIPROTKB|F1RFM9 | 852 | PMS2 "Uncharacterized protein" | 0.233 | 0.225 | 0.507 | 1.1e-83 | |
| POMBASE|SPAC19G12.02c | 794 | pms1 "MutL family mismatch-rep | 0.230 | 0.239 | 0.472 | 1.2e-83 | |
| UNIPROTKB|D3ZZF0 | 850 | Pms2 "Protein Pms2" [Rattus no | 0.234 | 0.227 | 0.5 | 5.9e-82 |
| UNIPROTKB|Q69L72 OSJNBa0016G10.12 "Os02g0592300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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Score = 1505 (534.8 bits), Expect = 1.3e-180, Sum P(2) = 1.3e-180
Identities = 341/760 (44%), Positives = 462/760 (60%)
Query: 80 RAVFLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPV 139
+ + L AYALIAKGVR VCTNT GKN KS VL+TQGSSSLKDNIITVFG+N + CL+P
Sbjct: 177 KVISLLNAYALIAKGVRLVCTNTVGKNSKSAVLRTQGSSSLKDNIITVFGLNTFKCLQPF 236
Query: 140 AICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSRQYP 199
+ S+ C+V+GFLSKPG GSGRN GDRQ+F+VN RPVD+PKVSKLVNELY+ +N++QYP
Sbjct: 237 NVTISEGCQVDGFLSKPGPGSGRNSGDRQFFYVNGRPVDMPKVSKLVNELYRSSNAKQYP 296
Query: 200 IAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIYSPNNASYSVNKVEQLI 259
+A++NF +PT + DVNV PDKRK+FFS E +IL +LREG++ +Y P S+S+N VE
Sbjct: 297 VAVLNFCIPTTSYDVNVAPDKRKIFFSSEHAILLSLREGIENLYCPQQCSFSINSVE--- 353
Query: 260 EPEKS-GPS-SGAESCMFL---EQLSPDGNGCIEILNEQQISKGNTPKTVEVDTLHSDAL 314
+P K P+ G++ M L E +S N + ++E TP+ +V + + +
Sbjct: 354 DPGKEMDPAIDGSDEDMCLTEKENVSAPEND--DDMDETDSDDEVTPENQKVPSSVTTRV 411
Query: 315 EGLVHSSNENGKGNFTLKAHDDKSADRLSKFNCMKLIGPHNVPTE-ENCPSPSRVMAKNI 373
++ K L DR + + + PT ++ P+ + + +
Sbjct: 412 -----ATGSTPKDVSPLSRGPPAQLDRSTLLSAYRYEQREKTPTRVKSYPAQANHVRTGL 466
Query: 374 TEDGESDSRSRCIQSSLNKFVTVSKRKYESIARPLTEMPLLRNQSLHCQMKKS----NS- 428
S S +Q S+ KF++ +KRK+E ++E P+LR + Q++++ NS
Sbjct: 467 AA---KSSPSSAVQPSIMKFLSQNKRKHEDSCNLISEAPVLRRGTCLEQVRRTDLGVNSP 523
Query: 429 -----------DMDAVDTRSPVRRHLVDD-IAKLNKIEPFKCNKADKVSK--EIENILSS 474
+++A +P+R H + + ++ + P + VS E+ +
Sbjct: 524 TALTSRVSNIPEVNAPQGTNPLRHHSLQSFVPEMPEDSPQHSEPPNIVSHRDEVPQLRPC 583
Query: 475 EGNTNEKPREELVTQEKATPLLNVPSIVSSSNDLKKNSEDLSVAASHLQFSGSILDAPVP 534
+ + E + + PS S K + ++S+ +H + G A
Sbjct: 584 DVHATESEVDN--QHDPCHSKFGAPSRCSEVEPQNKLT-NISLPDAH--YDGHDTAAHSG 638
Query: 535 SSSLDICSTLQFSIQDLRKRRQQRLSIMQSSCHTSGSVKMRRCFAAATLELSQPXXXXXX 594
SS + +QF++ DLR+RR+ I + S K RC+ AATL+ P
Sbjct: 639 QSSYPV---MQFTLADLRRRRRHSFMISHAK-KGSFPEKSTRCYKAATLDNYVPDNEEGK 694
Query: 595 XXXXXXXXXXXXXXFRKEDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLS 654
F K+DFG M+V+GQFNLGFIIGKLDQDLFIVDQHAADEKYNFE LS
Sbjct: 695 SNSLAAATSELDKLFSKDDFGEMEVVGQFNLGFIIGKLDQDLFIVDQHAADEKYNFENLS 754
Query: 655 QSTVLNQQPLLRPLKLDLTPEEEVVASMHMDIIRKNGFSLEEDPHALAGLRFRLKAVPFS 714
QST LN QPLL+PL+LDL+PEEEV+ SM+M IRKNGF L ED HA R+ +KAVPFS
Sbjct: 755 QSTTLNIQPLLQPLRLDLSPEEEVIVSMNMSTIRKNGFVLAEDLHASPCNRYFIKAVPFS 814
Query: 715 KKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVCPSRVRAMLASRACRSSIMIGD 774
K ITFG +DVK+LIS LAD+QG+CSIISSYK+D DS+CPSRVRAMLASRACR S MIGD
Sbjct: 815 KNITFGAQDVKELISMLADSQGDCSIISSYKLDRTDSICPSRVRAMLASRACRMSTMIGD 874
Query: 775 ALGRNEMQKILEHLADLNSPWNCPHGRPTMRHLVDLTTIR 814
L + EM+KIL++L L SPWNCPHGRPTMRHL DL I+
Sbjct: 875 PLTKTEMKKILKNLTGLRSPWNCPHGRPTMRHLADLHAIK 914
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| TAIR|locus:2133274 PMS1 "POSTMEIOTIC SEGREGATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PNU2 PMS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P54278 PMS2 "Mismatch repair endonuclease PMS2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| FB|FBgn0011660 Pms2 "Pms2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PNW0 PMS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-686 pms2 "PMS2 postmeiotic segregation increased 2 (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RFM9 PMS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC19G12.02c pms1 "MutL family mismatch-repair protein Pms1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D3ZZF0 Pms2 "Protein Pms2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 824 | |||
| cd03484 | 142 | cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_ | 4e-48 | |
| COG0323 | 638 | COG0323, MutL, DNA mismatch repair enzyme (predict | 4e-41 | |
| smart00853 | 140 | smart00853, MutL_C, MutL C terminal dimerisation d | 6e-36 | |
| cd00782 | 122 | cd00782, MutL_Trans, MutL_Trans: transducer domain | 2e-35 | |
| pfam08676 | 144 | pfam08676, MutL_C, MutL C terminal dimerisation do | 1e-32 | |
| pfam01119 | 119 | pfam01119, DNA_mis_repair, DNA mismatch repair pro | 5e-28 | |
| PRK00095 | 617 | PRK00095, mutL, DNA mismatch repair protein; Revie | 3e-27 | |
| TIGR00585 | 312 | TIGR00585, mutl, DNA mismatch repair protein MutL | 3e-26 | |
| TIGR00585 | 312 | TIGR00585, mutl, DNA mismatch repair protein MutL | 1e-25 | |
| COG0323 | 638 | COG0323, MutL, DNA mismatch repair enzyme (predict | 9e-22 | |
| COG0323 | 638 | COG0323, MutL, DNA mismatch repair enzyme (predict | 1e-20 | |
| cd00329 | 107 | cd00329, TopoII_MutL_Trans, MutL_Trans: transducer | 1e-20 | |
| cd03485 | 132 | cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_ | 1e-17 | |
| PRK00095 | 617 | PRK00095, mutL, DNA mismatch repair protein; Revie | 8e-17 | |
| PRK00095 | 617 | PRK00095, mutL, DNA mismatch repair protein; Revie | 2e-14 | |
| pfam13589 | 134 | pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr | 3e-08 | |
| cd03483 | 127 | cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transdu | 9e-08 | |
| cd03486 | 141 | cd03486, MutL_Trans_MLH3, MutL_Trans_MLH3: transdu | 4e-06 | |
| cd03482 | 123 | cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transdu | 6e-06 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 4e-05 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 7e-05 | |
| PRK04184 | 535 | PRK04184, PRK04184, DNA topoisomerase VI subunit B | 2e-04 | |
| COG1389 | 538 | COG1389, COG1389, DNA topoisomerase VI, subunit B | 2e-04 |
| >gnl|CDD|239566 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 4e-48
Identities = 61/142 (42%), Positives = 83/142 (58%), Gaps = 16/142 (11%)
Query: 119 SLKDNIITVFGMNIYNCLEPVAICKSDS----------------CKVEGFLSKPGQGSGR 162
+KDNII VFG + L P+ + + K+ G++SKP G GR
Sbjct: 1 DIKDNIINVFGGKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGR 60
Query: 163 NLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSRQYPIAIMNFIVPTRACDVNVTPDKRK 222
+ DRQ+F++N RPVDL KV+KL+NE+YK NSRQYP I+N +PT DVNVTPDKR
Sbjct: 61 SSSDRQFFYINGRPVDLKKVAKLINEVYKSFNSRQYPFFILNISLPTSLYDVNVTPDKRT 120
Query: 223 VFFSDECSILHALREGLQEIYS 244
V DE ++ L+ L E++
Sbjct: 121 VLLHDEDRLIDTLKTSLSELFE 142
|
hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome. Length = 142 |
| >gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|214857 smart00853, MutL_C, MutL C terminal dimerisation domain | Back alignment and domain information |
|---|
| >gnl|CDD|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family | Back alignment and domain information |
|---|
| >gnl|CDD|219965 pfam08676, MutL_C, MutL C terminal dimerisation domain | Back alignment and domain information |
|---|
| >gnl|CDD|201604 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >gnl|CDD|239567 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 | Back alignment and domain information |
|---|
| >gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|239565 cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1) | Back alignment and domain information |
|---|
| >gnl|CDD|239568 cd03486, MutL_Trans_MLH3, MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3) | Back alignment and domain information |
|---|
| >gnl|CDD|239564 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL | Back alignment and domain information |
|---|
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|224307 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 100.0 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 100.0 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 100.0 | |
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 100.0 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 100.0 | |
| KOG1977 | 1142 | consensus DNA mismatch repair protein - MLH3 famil | 100.0 | |
| PF08676 | 144 | MutL_C: MutL C terminal dimerisation domain; Inter | 99.97 | |
| cd03483 | 127 | MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain | 99.97 | |
| cd03485 | 132 | MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: tran | 99.96 | |
| cd03482 | 123 | MutL_Trans_MutL MutL_Trans_MutL: transducer domain | 99.96 | |
| PF01119 | 119 | DNA_mis_repair: DNA mismatch repair protein, C-ter | 99.96 | |
| cd03484 | 142 | MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: tran | 99.95 | |
| cd03486 | 141 | MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain | 99.95 | |
| cd00782 | 122 | MutL_Trans MutL_Trans: transducer domain, having a | 99.95 | |
| smart00853 | 136 | MutL_C MutL C terminal dimerisation domain. MutL a | 99.91 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.79 | |
| cd00329 | 107 | TopoII_MutL_Trans MutL_Trans: transducer domain, h | 99.75 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 99.21 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 99.2 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 99.14 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 98.99 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 98.98 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 98.96 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 98.96 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 98.77 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 98.75 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 98.59 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 98.53 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 98.01 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 97.74 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 97.59 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 97.48 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 97.02 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 96.6 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 96.55 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 96.39 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 96.31 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 96.27 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 96.27 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 96.23 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 96.21 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 96.2 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 96.05 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 96.03 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 95.9 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 95.81 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 95.78 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 95.78 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 95.73 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 95.68 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 95.59 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 95.5 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 95.37 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 95.35 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 95.32 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 95.3 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 95.09 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 95.01 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 94.98 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 94.96 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 94.91 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 94.82 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 94.75 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 94.53 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 94.46 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 94.39 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 94.29 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 94.28 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 94.23 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 94.2 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 93.87 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 93.84 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 93.73 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 93.7 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 93.53 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 93.5 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 93.45 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 93.22 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 93.17 | |
| COG3275 | 557 | LytS Putative regulator of cell autolysis [Signal | 92.94 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 92.92 | |
| PRK13557 | 540 | histidine kinase; Provisional | 92.65 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 92.64 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 92.46 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 92.43 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 92.31 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 92.01 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 91.96 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 91.71 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 91.22 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 90.83 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 90.52 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 90.5 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 90.41 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 89.41 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 87.07 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 85.51 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 85.21 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 81.56 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 80.68 |
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-91 Score=817.50 Aligned_cols=533 Identities=29% Similarity=0.418 Sum_probs=384.7
Q ss_pred CCCcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH------
Q 041466 9 SPTIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV------ 82 (824)
Q Consensus 9 ~~~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~------ 82 (824)
|++|+.||+.++|||||||||+||+||||||||||||||||+|+|.+++||+.+|+|+||||||+++|++.++.
T Consensus 1 M~~Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 1 MPKIRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred CCcceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 55799999999999999999999999999999999999999999999999999999999999999999986666
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 81 I~~~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~dLF~NtPaRrK 160 (638)
T COG0323 81 IASLEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRK 160 (638)
T ss_pred CCchhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccCCCCCCCCEEEehHhhccChHHHH
Confidence
Q ss_pred -------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccceeeEeecCCceEE
Q 041466 83 -------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAICKSDSCKV 149 (824)
Q Consensus 83 -------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i~~~~~~~~~i 149 (824)
++|++|||+||+|+|+|++++ |.. ..++.+++.++..++++.|||..+.+++++++.. .+++++
T Consensus 161 flks~~~E~~~i~~vv~r~ALahp~I~F~l~~~g-k~~-~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~-~~~~~l 237 (638)
T COG0323 161 FLKSEKTEFGHITELINRYALAHPDISFSLSHNG-KLR-IELLKLPGTGDLEERIAAVYGTEFLKNALPIENE-HEDLRL 237 (638)
T ss_pred hhcccHHHHHHHHHHHHHHHhcCCCeEEEEEECC-cee-eEEEecCCCCcHHHHHHHHhCHHHHHhhcccccC-CCceEE
Confidence 999999999999999999984 432 2566788888888899999999999999999988 888999
Q ss_pred EEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCC-CCcEEEEEEEcCCCceeeeccCCCCEEEeCCh
Q 041466 150 EGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSR-QYPIAIMNFIVPTRACDVNVTPDKRKVFFSDE 228 (824)
Q Consensus 150 ~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e 228 (824)
.||++.|. +.|.++++||+|||||||+++.|.+||.++|+.++|. +||+|||+|+|||..|||||||+|+||+|+++
T Consensus 238 ~G~v~~P~--~~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~EVrf~~~ 315 (638)
T COG0323 238 SGYVSLPE--FTRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVRFSDE 315 (638)
T ss_pred EEEecccc--cccCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcceEEecCH
Confidence 99999996 4799999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCccccccccccCCCCCCCCCCcccccccccCCCCCCCcccchhhhhccCCCCCCcccccc
Q 041466 229 CSILHALREGLQEIYSPNNASYSVNKVEQLIEPEKSGPSSGAESCMFLEQLSPDGNGCIEILNEQQISKGNTPKTVEVDT 308 (824)
Q Consensus 229 ~~v~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (824)
+.|+++|+++|.++|.......+... . ....... ....... ..+..... ...+....
T Consensus 316 ~~i~~~I~~~I~~~L~~~~~~~~~~~-~--~~~~~~~----~~~~~~~--~~~~~~~~-----------~~~~~~~~--- 372 (638)
T COG0323 316 RLVHDLIYEAIKEALAQQGLIPPASV-E--APKSASQ----PLPAFQE--PSPLPESR-----------IQKSKVAK--- 372 (638)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcccc-c--ccccccc----ccccccc--Cccccccc-----------cccccccc---
Confidence 99999999999999976543221000 0 0000000 0000000 00000000 00000000
Q ss_pred ccccccccccccCCCCCCCCcccccCCCcchhhhhcccccccCCCCCCCCCCCCCCCcccccccccCCCCCCCccccccc
Q 041466 309 LHSDALEGLVHSSNENGKGNFTLKAHDDKSADRLSKFNCMKLIGPHNVPTEENCPSPSRVMAKNITEDGESDSRSRCIQS 388 (824)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (824)
...... . .+ ....+ .... . + . ...+
T Consensus 373 -------------------~~~~~~--~-~~-~~~~~--------~~~~-~---~--~------------------~~~~ 397 (638)
T COG0323 373 -------------------SGSSKS--D-AP-SIAEP--------ASGA-S---P--S------------------PASP 397 (638)
T ss_pred -------------------ccCCcc--c-cc-ccccc--------cccC-C---c--c------------------cccc
Confidence 000000 0 00 00000 0000 0 0 0 0000
Q ss_pred cccccccccccccccccCCCCcccccccccccccccccCCCCCcccCCCccccccchhhhhhcccccccccccccchhhh
Q 041466 389 SLNKFVTVSKRKYESIARPLTEMPLLRNQSLHCQMKKSNSDMDAVDTRSPVRRHLVDDIAKLNKIEPFKCNKADKVSKEI 468 (824)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (824)
.... .. . ... ..... .. ..
T Consensus 398 ~~~~---~~------------~-~~~----~~~~~---~~----------~~---------------------------- 416 (638)
T COG0323 398 SIRP---LS------------K-NIL----PESSP---GS----------LK---------------------------- 416 (638)
T ss_pred cccc---cc------------c-ccc----ccccc---cc----------cc----------------------------
Confidence 0000 00 0 000 00000 00 00
Q ss_pred hhccccCCCCCCCcchhhhhccccCCCCCCCCccCCCcccccccchhhhhhhcccccCCcCCCCCCCCCcccccchhhhH
Q 041466 469 ENILSSEGNTNEKPREELVTQEKATPLLNVPSIVSSSNDLKKNSEDLSVAASHLQFSGSILDAPVPSSSLDICSTLQFSI 548 (824)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (824)
....... +. ..... ..... ..
T Consensus 417 ------------------------------~~~~~~~-~~--------~~~~~--------~s~~~-~~----------- 437 (638)
T COG0323 417 ------------------------------NEDRSYD-DL--------LEEPA--------ESEDK-QE----------- 437 (638)
T ss_pred ------------------------------hhccccc-cc--------ccccc--------hhccc-cc-----------
Confidence 0000000 00 00000 00000 00
Q ss_pred HHHHHHHHHhhhhhccccccCCcchhhhhhhhhhcccCCchhHHHHHHHHHHhhHHHhhhccccCCCCcEEEEEEeCcEE
Q 041466 549 QDLRKRRQQRLSIMQSSCHTSGSVKMRRCFAAATLELSQPENEERKARALAAATTELERLFRKEDFGRMKVIGQFNLGFI 628 (824)
Q Consensus 549 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ae~~l~~~~~k~~~~~~~vigQ~~~~fI 628 (824)
. . .... .....|+.++++||++++||
T Consensus 438 -----------------~---------------~---------------~~~~-------~~~~~~~~~~~i~q~~~~yi 463 (638)
T COG0323 438 -----------------E---------------A---------------EQKA-------ISEDVFPLGEAIGQVHGTYI 463 (638)
T ss_pred -----------------c---------------c---------------cccc-------ccccccccceEEEEecceEE
Confidence 0 0 0000 00145788999999999999
Q ss_pred EEEeCCcEEEEehhhHHHHHHHHHHhcccCC--CcccccccceeecCHHHHHHHHHHHHHHHHcCeEEEecCCCCCccEE
Q 041466 629 IGKLDQDLFIVDQHAADEKYNFERLSQSTVL--NQQPLLRPLKLDLTPEEEVVASMHMDIIRKNGFSLEEDPHALAGLRF 706 (824)
Q Consensus 629 l~~~~~~L~iIDQHAAhERi~yE~l~~~~~~--~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L~~~Gf~~e~~~~~~~~~~v 706 (824)
|++.+++||||||||||||++||+|+..... ..|+||+|+.|+|++.|+..++++.+.|.++||.++.+ |++.+
T Consensus 464 l~e~~~~L~lvDqhaa~Eri~ye~l~~~~~~~~~~Q~LliP~~~~l~~~e~~~~~~~~~~l~~~G~~i~~~----g~~~~ 539 (638)
T COG0323 464 LAEHEDGLVLVDQHAAHERILYEKLKNELGNVGELQPLLIPIRLELSPEEADVLEEHKEELEKLGFEIESF----GENSV 539 (638)
T ss_pred EEEeCCCEEEEEhHHhHHHHHHHHHHHHhcccccccccccCeeeecCHHHHHHHHHHHHHHHhcCEEEEEc----CCceE
Confidence 9999999999999999999999999987554 58999999999999999999999999999999999995 46789
Q ss_pred EEEeeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCCCCChHHHHHHHHHHHhhcccccCCCCCHHHHHHHHH
Q 041466 707 RLKAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVCPSRVRAMLASRACRSSIMIGDALGRNEMQKILE 786 (824)
Q Consensus 707 ~l~~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ACr~AIk~Gd~Ls~~Em~~Ll~ 786 (824)
.|++||.+++.......+.+++..+.+ .. .........++++++|||+|||+|+.|+.++|..|++
T Consensus 540 ~v~~vP~~l~~~~~~~~i~~l~~~~~~-~~-------------~~~~~~~~~~~~a~~aC~~svk~~~~l~~~~m~~Ll~ 605 (638)
T COG0323 540 AVRSVPAMLGKAEVQELIRELLDDLLE-GK-------------LKDLKELLEELAATMACRSAVKAGRELSAEEMNALLR 605 (638)
T ss_pred EEEecChhhcccchHHHHHHHHHHhhc-cc-------------ccchhHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHH
Confidence 999999985444333444444444443 11 1112346788999999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCceeEEcc--cchhhhhh
Q 041466 787 HLADLNSPWNCPHGRPTMRHLV--DLTTIRKN 816 (824)
Q Consensus 787 ~L~~~~~P~~CPHGRPt~~~L~--~l~~~~~~ 816 (824)
+|..|++||+||||||||+++. +|+++|.+
T Consensus 606 ~~~~~~~~~~cpHGRp~~~~~~~~~l~~~F~r 637 (638)
T COG0323 606 DLEACPNPWTCPHGRPTYIVLSLAELERLFKR 637 (638)
T ss_pred HHHhCCCccCCCCCCCceEeechHHHHHhhCC
Confidence 9999999999999999999998 66677764
|
|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors [] | Back alignment and domain information |
|---|
| >cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1) | Back alignment and domain information |
|---|
| >cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 | Back alignment and domain information |
|---|
| >cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL | Back alignment and domain information |
|---|
| >PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL | Back alignment and domain information |
|---|
| >cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) | Back alignment and domain information |
|---|
| >cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3) | Back alignment and domain information |
|---|
| >cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family | Back alignment and domain information |
|---|
| >smart00853 MutL_C MutL C terminal dimerisation domain | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 824 | ||||
| 4e4w_B | 239 | Structure Of The C-terminal Domain Of The Saccharom | 2e-44 | ||
| 4fmn_B | 240 | Structure Of The C-terminal Domain Of The Saccharom | 2e-44 | ||
| 1h7s_A | 365 | N-Terminal 40kda Fragment Of Human Pms2 Length = 36 | 2e-27 | ||
| 1h7u_A | 365 | Hpms2-atpgs Length = 365 | 3e-27 | ||
| 1ea6_A | 364 | N-Terminal 40kda Fragment Of Nhpms2 Complexed With | 3e-27 | ||
| 3h4l_A | 367 | Crystal Structure Of N Terminal Domain Of A Dna Rep | 3e-22 | ||
| 3na3_A | 348 | Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens | 3e-10 | ||
| 1b62_A | 355 | Mutl Complexed With Adp Length = 355 | 5e-09 | ||
| 1bkn_A | 352 | Crystal Structure Of An N-Terminal 40kd Fragment Of | 5e-09 | ||
| 1b63_A | 333 | Mutl Complexed With Adpnp Length = 333 | 6e-09 | ||
| 1nhj_A | 333 | Crystal Structure Of N-Terminal 40kd MutlA100P MUTA | 6e-09 | ||
| 3ncv_A | 220 | Ngol Length = 220 | 1e-08 | ||
| 3gab_A | 197 | C-Terminal Domain Of Bacillus Subtilis Mutl Crystal | 1e-05 |
| >pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Length = 239 | Back alignment and structure |
|
| >pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A Fragment Of Ntg2 Length = 240 | Back alignment and structure |
| >pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2 Length = 365 | Back alignment and structure |
| >pdb|1H7U|A Chain A, Hpms2-atpgs Length = 365 | Back alignment and structure |
| >pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp Length = 364 | Back alignment and structure |
| >pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair Prote Length = 367 | Back alignment and structure |
| >pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens Length = 348 | Back alignment and structure |
| >pdb|1B62|A Chain A, Mutl Complexed With Adp Length = 355 | Back alignment and structure |
| >pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E. Coli Dna Mismatch Repair Protein Mutl Length = 352 | Back alignment and structure |
| >pdb|1B63|A Chain A, Mutl Complexed With Adpnp Length = 333 | Back alignment and structure |
| >pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT PROTEIN COMPLEX With Adpnp And One Sodium Length = 333 | Back alignment and structure |
| >pdb|3NCV|A Chain A, Ngol Length = 220 | Back alignment and structure |
| >pdb|3GAB|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I Length = 197 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 9e-50
Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 86 QAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAIC--- 142
AY +I+ G+R CTN G+ + V+ T GS S+K+NI +VFG L P
Sbjct: 189 HAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPS 248
Query: 143 --------------KSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNE 188
+ + GF+S+ G GR+ DRQ+FF+N RP D KV +LVNE
Sbjct: 249 DSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNE 308
Query: 189 LYKGANSRQYPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIYS 244
+Y N QYP ++N V + D+NVTPDKR++ +E +L L+ L ++
Sbjct: 309 VYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364
|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 | Back alignment and structure |
|---|
| >3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A* Length = 197 | Back alignment and structure |
|---|
| >3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae} Length = 220 | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 | Back alignment and structure |
|---|
| >1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1 Length = 188 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 100.0 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 100.0 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 100.0 | |
| 3kdg_A | 197 | DNA mismatch repair protein MUTL; endonuclease, DN | 100.0 | |
| 3ncv_A | 220 | DNA mismatch repair protein MUTL; endonuclease, di | 100.0 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 100.0 | |
| 1x9z_A | 188 | DNA mismatch repair protein MUTL; alpha-beta fold, | 100.0 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 99.73 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 99.7 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 99.68 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.64 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 99.64 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 99.55 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.55 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 99.32 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 98.97 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 98.95 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 98.94 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 98.92 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 98.84 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 98.83 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 98.67 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 98.66 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 98.65 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 98.63 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 98.63 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 98.62 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 98.59 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 98.56 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 98.35 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 97.88 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 97.81 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 97.67 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 97.63 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 97.51 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 97.48 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 97.46 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 97.35 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 97.21 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 97.17 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.12 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 97.08 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 97.06 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 96.94 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 96.94 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 96.85 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 96.85 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 96.84 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 96.82 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 96.61 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 96.6 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 96.53 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 96.44 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 96.4 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 95.89 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 95.74 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 95.62 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 94.53 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 94.49 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 94.31 | |
| 1ixm_A | 192 | SPO0B, protein (sporulation response regulatory pr | 88.81 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 88.36 |
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-55 Score=484.64 Aligned_cols=238 Identities=41% Similarity=0.652 Sum_probs=214.5
Q ss_pred CCCcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH------
Q 041466 9 SPTIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV------ 82 (824)
Q Consensus 9 ~~~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~------ 82 (824)
|++|+.||+++++||||||||++|++||||||||||||||+.|.|.+.++|...|+|.|||+||++++++.++.
T Consensus 3 M~~I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp ----------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CCcceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCc
Confidence 56899999999999999999999999999999999999999999999989988999999999999999887654
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si~avS~l~V~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k~ 162 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKE 162 (367)
T ss_dssp -------CCCCEEEETTHHHHHHHHSSEEEEEEESSTTCEEEEEECTTCCEEEEEEECCSSEEEEEEESTTTTCHHHHHH
T ss_pred CCchhhhhhhhccCccchHHHHhhccCEEEEEEEECCCCEEEEEEcCCCcEEeeccccCCCCeEEEEchhhccCchhhhh
Confidence
Q ss_pred -------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccceeeEe--------
Q 041466 83 -------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAI-------- 141 (824)
Q Consensus 83 -------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i~~-------- 141 (824)
++|++||++||+|+|+|+++.+++.+..+|++++.++++++|.+|||..++.+|++++.
T Consensus 163 flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~ 242 (367)
T 3h4l_A 163 FSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 242 (367)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEEECGGGC
T ss_pred hccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHHHHHhCHHHHhccEEEeccccccccc
Confidence 78899999999999999997656666788999999999999999999999999999987
Q ss_pred ---------------ecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCCCCcEEEEEEE
Q 041466 142 ---------------CKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSRQYPIAIMNFI 206 (824)
Q Consensus 142 ---------------~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~P~~~L~i~ 206 (824)
. ...++|+|||++|.++++|+++++||||||||||+++.|.+||+++|+.+++.+||++||+|+
T Consensus 243 ~~~~~~~~~~~~~~~~-~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~~~~~P~~~L~l~ 321 (367)
T 3h4l_A 243 NRMLGKYTDDPDFLDL-DYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFNNVQFPAVFLNLE 321 (367)
T ss_dssp CCCC-------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTCSSCBCCEEEEEE
T ss_pred cccccccccccccccc-CCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecCHHHHHHHHHHHHhcCCCCCcEEEEEEE
Confidence 3 456999999999998778999999999999999999999999999999998779999999999
Q ss_pred cCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHHHhcCCC
Q 041466 207 VPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIYSPNN 247 (824)
Q Consensus 207 ~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l~~~~ 247 (824)
|||..|||||||+|+||+|++|+.|+++|+.+|+++|.+++
T Consensus 322 ~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 322 LPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp CCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHcceeECCCCCEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999997643
|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A* | Back alignment and structure |
|---|
| >3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 824 | ||||
| d1x9za_ | 182 | d.292.1.1 (A:) DNA mismatch repair protein MutL {E | 7e-30 | |
| d1h7sa1 | 134 | d.14.1.3 (A:232-365) DNA mismatch repair protein P | 2e-26 | |
| d1b63a2 | 218 | d.122.1.2 (A:-2-216) DNA mismatch repair protein M | 5e-25 | |
| d1b63a1 | 115 | d.14.1.3 (A:217-331) DNA mismatch repair protein M | 1e-19 | |
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 7e-18 | |
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 2e-07 |
| >d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNA mismatch repair protein MutL superfamily: DNA mismatch repair protein MutL family: DNA mismatch repair protein MutL domain: DNA mismatch repair protein MutL species: Escherichia coli [TaxId: 562]
Score = 114 bits (287), Expect = 7e-30
Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 33/199 (16%)
Query: 614 FGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERL-SQSTVLNQQPLLRPLKLDL 672
FGR V+ + + + D ++ ++ A+ +L + QPLL PL+L +
Sbjct: 3 FGR--VLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKV 60
Query: 673 TPEEEVVASMHMDIIRKNGFSLEEDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLA 732
+ EE+ + + G + D ++AVP + + +LI LA
Sbjct: 61 SAEEKSALEKAQSALAELGIDFQSDAQ-----HVTIRAVPLPLRQQNLQILIPELIGYLA 115
Query: 733 DNQGECSIISSYKMDTADSVCPSRVRAMLASRACRSSIMIGDALGRNEMQKILEHLADLN 792
+A R+ + + +L + L
Sbjct: 116 KQ-------------------SVFEPGNIAQWIARNLMSEHAQWSMAQAITLLADVERL- 155
Query: 793 SPWNCPHGRPT-MRHLVDL 810
CP T L+
Sbjct: 156 ----CPQLVKTPPGGLLQS 170
|
| >d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 | Back information, alignment and structure |
|---|
| >d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 | Back information, alignment and structure |
|---|
| >d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
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| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| d1x9za_ | 182 | DNA mismatch repair protein MutL {Escherichia coli | 100.0 | |
| d1b63a1 | 115 | DNA mismatch repair protein MutL {Escherichia coli | 99.96 | |
| d1h7sa1 | 134 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.95 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 99.95 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.89 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.09 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 97.88 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 97.73 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 97.72 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 97.54 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 97.54 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 97.42 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 97.39 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 97.11 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.05 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 96.9 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 96.85 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 96.8 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 96.72 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 96.71 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 96.42 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 95.95 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 95.25 | |
| d2isya2 | 76 | Iron-dependent regulator {Mycobacterium tuberculos | 93.57 |
| >d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNA mismatch repair protein MutL superfamily: DNA mismatch repair protein MutL family: DNA mismatch repair protein MutL domain: DNA mismatch repair protein MutL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-34 Score=287.35 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=139.5
Q ss_pred cEEEEEEeCcEEEEEeCCcEEEEehhhHHHHHHHHHHhcc-cCCCcccccccceeecCHHHHHHHHHHHHHHHHcCeEEE
Q 041466 617 MKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQS-TVLNQQPLLRPLKLDLTPEEEVVASMHMDIIRKNGFSLE 695 (824)
Q Consensus 617 ~~vigQ~~~~fIl~~~~~~L~iIDQHAAhERi~yE~l~~~-~~~~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L~~~Gf~~e 695 (824)
.++||||+++|||++.++|||||||||||||+.||+|++. ..+.+|+||+|+.++|++.+..+++++.+.|++|||+++
T Consensus 4 grvl~~v~~~Yil~e~~~gl~lidqhaA~eri~~e~l~~~~~~i~sQ~LL~P~~l~ls~~e~~~l~~~~~~L~~~Gf~~e 83 (182)
T d1x9za_ 4 GRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQ 83 (182)
T ss_dssp CEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHSBTTBCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhhhhhcCEEEEEEeCCceEEEeHHHHHHHHHHHHHHhccCCCCccccCCCeeecCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 4899999999999999999999999999999999999874 458899999999999999999999999999999999999
Q ss_pred ecCCCCCccEEEEEeeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCCCCChHHHHHHHHHHHhhcccccCCC
Q 041466 696 EDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVCPSRVRAMLASRACRSSIMIGDA 775 (824)
Q Consensus 696 ~~~~~~~~~~v~l~~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ACr~AIk~Gd~ 775 (824)
.+ ++++.|++||.+ +...++.++|.++++.... ... ...+.+|++|||+|||+|+.
T Consensus 84 ~~-----g~~i~v~~iP~~----l~~~~~~~~i~ell~~l~~-----------~~~----~~~~~la~~ac~~aik~~~~ 139 (182)
T d1x9za_ 84 SD-----AQHVTIRAVPLP----LRQQNLQILIPELIGYLAK-----------QSV----FEPGNIAQWIARNLMSEHAQ 139 (182)
T ss_dssp EC-----SSEEEEEEEEGG----GTTSCHHHHHHHHHHHHTT-----------CSS----CCHHHHHHHHHHTTSCCCCS
T ss_pred cc-----ccceeeecCCcc----cccCCHHHHHHHHHHHHHh-----------CCc----hHHHHHHHHHHHHHHhCCCC
Confidence 84 368999999997 6677888888887776442 111 23467899999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCCCCCCce
Q 041466 776 LGRNEMQKILEHLADLNSPWNCPHGRPT 803 (824)
Q Consensus 776 Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt 803 (824)
||.+||..||++|..+ |||+||+
T Consensus 140 Ls~~E~~~LL~ele~~-----Cp~~~~~ 162 (182)
T d1x9za_ 140 WSMAQAITLLADVERL-----CPQLVKT 162 (182)
T ss_dssp CCHHHHHHHHHHHHHH-----CHHHHHS
T ss_pred CCHHHHHHHHHHHHHh-----CCCCCCC
Confidence 9999999999999664 9999988
|
| >d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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