Citrus Sinensis ID: 041564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MMIKPQLWATATKTSSSRLNNRLKNQIIGSQTKKLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSVVPLDPSKNSLNNECGIIYLSLILAEIFYDRVACEV
Secondary Structure (PSIPRED)
ccccccHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHccccccEEEccccEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEHEEccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHEEEcccHHHHHHHHHHHHHHHcccccccccccEccccccccccccccccccccccccHHHHHHHHHHHHHHHHccEEccc
Coil and Loop (DISEMBL)
mmikpqlwatatKTSSSRLNNRLKNQIIGSQTKKLSFLKKLYrlilppsrftcGFEAIQAMLDaglfpdlslifsRRDEQVADTMLLCKAEaggmhmrqssnvevpngsdhdydsvvpldpsknslnnecgIIYLSLILAEIFYDRVACEV
Flexible Loop (DISEMBL)
mmikpqlwatatktsssrlnnrlknqiigsqtkkLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSVVPLDPSKNSLNNECGIIYLSLILAEIFYDRVACEV
Low Complexity Region (SEG)
MMIKPQLWATATKTSSSRLNNRLKNQIIGSQTKKLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSVVPLDPSKNSLNNECGIIYLSLILAEIFYDRVACEV
Disordered region (IsUnstruct)
*************************QIIGSQTKKLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKA***********************************LNNECGIIYLSLILAEIFYDRVAC**
Disordered Region (DISOPRED)
*****QLWA*****************IIGSQTKKLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAG*****************HDYDSVVPLDPSKNSLNNECGIIYLSLILAEIFYDRVACEV
Disordered Region (DISEMBL)
MMIKPQLWATATKTSSSRLNNRLKNQIIGSQTKKLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSVVPLDPSKNSLNNECGIIYLSLILAEIFYDRVACEV
Disordered Region (DISPRO)
**IKPQLWATATKTSSSRLNNRLKNQIIGSQTKKLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAG******************DYDSVVPLDPSKNSLNNECGIIYLSLILAEIFYDRVACEV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMIKPQLWATATKTSSSRLNNRLKNQIIGSQTKKLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSVVPLDPSKNSLNNECGIIYLSLILAEIFYDRVACEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
4836950	688	Hypothetical protein [Arabidopsis thalia	0.410	0.090	0.4	2e-05
15223823	666	armadillo/beta-catenin-like repeats-cont	0.417	0.094	0.395	2e-05
297847504	666	armadillo/beta-catenin repeat family pro	0.417	0.094	0.395	2e-05

>gi|4836950|gb|AAD30652.1|AC006085_25 Hypothetical protein [Arabidopsis thaliana]

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 23/85 (27%)

Query: 23  LKNQIIGSQTKKLSFLKK----------------------LYRLILPPSRFTCGFEA-IQ 59
           +KNQIIG++TKKLSFLK                       L +       F CGFEA +Q
Sbjct: 43  VKNQIIGNRTKKLSFLKLGAIPAIASVLADADDSDECNNILVQSAAALGSFACGFEAGVQ 102

Query: 60  AMLDAGLFPDLSLIFSRRDEQVADT 84
           A+LDAG+FP L  + +  DE+V D 
Sbjct: 103 AVLDAGVFPHLLRLLTNTDEKVVDA 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223823|ref|NP_175546.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi|20260482|gb|AAM13139.1| unknown protein [Arabidopsis thaliana] gi|30725506|gb|AAP37775.1| At1g51350 [Arabidopsis thaliana] gi|332194533|gb|AEE32654.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 23/86 (26%)

Query: 22  RLKNQIIGSQTKKLSFLKK----------------------LYRLILPPSRFTCGFEA-I 58
            +KNQIIG++TKKLSFLK                       L +       F CGFEA +
Sbjct: 42  EVKNQIIGNRTKKLSFLKLGAIPAIASVLADADDSDECNNILVQSAAALGSFACGFEAGV 101

Query: 59  QAMLDAGLFPDLSLIFSRRDEQVADT 84
           QA+LDAG+FP L  + +  DE+V D 
Sbjct: 102 QAVLDAGVFPHLLRLLTNTDEKVVDA 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847504|ref|XP_002891633.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297337475|gb|EFH67892.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 23/86 (26%)

Query: 22  RLKNQIIGSQTKKLSFLK------------------KLYRLILPPS----RFTCGFEA-I 58
            +KNQIIG++TKKLSFLK                  K   +++  +     F CGFEA +
Sbjct: 42  EVKNQIIGNRTKKLSFLKLGAIPAIASVLADADDSDKCNNILVQSAAALGSFACGFEAGV 101

Query: 59  QAMLDAGLFPDLSLIFSRRDEQVADT 84
           QA+LDAG+FP L  + +  DE+V D 
Sbjct: 102 QAVLDAGVFPHLLRLLTNPDEKVVDA 127

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2008246	666	AT1G51350 "AT1G51350" [Arabido	0.218	0.049	0.558	1.6e-06

TAIR|locus:2008246 AT1G51350 "AT1G51350" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query:    51 FTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVAD 83
             F CGFEA +QA+LDAG+FP L  + +  DE+V D
Sbjct:    93 FACGFEAGVQAVLDAGVFPHLLRLLTNTDEKVVD 126

GO:0008150 "biological_process" evidence=ND

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.16
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.87
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.31
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.14
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.02
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	96.1
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	94.22
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	93.58
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	93.46
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	92.91
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.24
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	91.91
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	90.26
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	85.61

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.16  E-value=2e-11  Score=113.78  Aligned_cols=80  Identities=21%  Similarity=0.137  Sum_probs=73.4

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh-h----------------cccccccChHH-HHHHHhcCChHHHHhhhc
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI-L----------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFS   75 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI-L----------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs   75 (151)
                      -+||+...||++||++++|..+|+.|  |++. |                ++||+++|.++ ++++++++.+|+|+++|+
T Consensus        26 lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs  105 (678)
T KOG1293|consen   26 LVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLS  105 (678)
T ss_pred             HHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhc
Confidence            47999999999999999999999999  5422 2                99999999999 999999999999999999


Q ss_pred             cCC-HHHHHHHHHHHHHhccc
Q 041564           76 RRD-EQVADTMLLCKAEAGGM   95 (151)
Q Consensus        76 ~~D-~KVVEAcLRcLr~~~~~   95 (151)
                      .+| .+++|+++||+|..=-+
T Consensus       106 ~sD~~~~le~~l~~lR~Ifet  126 (678)
T KOG1293|consen  106 ESDSLNVLEKTLRCLRTIFET  126 (678)
T ss_pred             CcchHhHHHHHHHHHHHHHhc
Confidence            999 99999999999987544

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.87  E-value=2.8e-05  Score=46.76  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=33.8

Q ss_pred             HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564           58 IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAG   93 (151)
Q Consensus        58 VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~   93 (151)
                      .+.++++|++|.|+++|.++|+.+.+.|+.+|+.++
T Consensus         5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999998653

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.31  E-value=0.0011  Score=43.66  Aligned_cols=78  Identities=17%  Similarity=0.180  Sum_probs=65.9

Q ss_pred             cchhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhcc
Q 041564           15 SSSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSR   76 (151)
Q Consensus        15 ~s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~   76 (151)
                      -+..|+..+.|...++...+..+++.|  |..+  |             +|+.++.+.++ .+.+.+.|++|.|+..|..
T Consensus        23 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~  102 (120)
T cd00020          23 VQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDS  102 (120)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhc
Confidence            345678899999999888888999877  5522  2             89999998877 8888999999999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 041564           77 RDEQVADTMLLCKAEA   92 (151)
Q Consensus        77 ~D~KVVEAcLRcLr~~   92 (151)
                      .+.++.+.++.+++-+
T Consensus       103 ~~~~~~~~a~~~l~~l  118 (120)
T cd00020         103 SNEDIQKNATGALSNL  118 (120)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988754

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.14  E-value=0.0013  Score=37.60  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=32.9

Q ss_pred             HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564           58 IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAG   93 (151)
Q Consensus        58 VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~   93 (151)
                      .+.+.++|++|.|+.+|.++|+++++.++.+|+-++
T Consensus         5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            677889999999999999999999999999998654

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.02  E-value=0.001  Score=43.73  Aligned_cols=49  Identities=27%  Similarity=0.404  Sum_probs=45.1

Q ss_pred             hcccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcc
Q 041564           46 LPPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        46 LVLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~   94 (151)
                      ..+++++.+.++ .+.+++.|++|.|+.+|.++|+++.+.|+.+|+....
T Consensus        29 ~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~   78 (120)
T cd00020          29 WALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA   78 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence            489999999888 9999999999999999999999999999999998853

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=96.10  E-value=0.0096  Score=62.32  Aligned_cols=82  Identities=15%  Similarity=0.039  Sum_probs=71.3

Q ss_pred             cccchhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhh
Q 041564           13 KTSSSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIF   74 (151)
Q Consensus        13 ~~~s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lL   74 (151)
                      .....++...|+|.-.|++.....+++.|  |+++  |             ++|-++.|.++ -++++++|++|.|+++|
T Consensus       418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL  497 (2102)
T PLN03200        418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL  497 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence            33456678889999999999999999998  7755  3             78999999988 88999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHHhcc
Q 041564           75 SRRDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        75 s~~D~KVVEAcLRcLr~~~~   94 (151)
                      ++++.++-|.|+.+|--++.
T Consensus       498 ~s~~~~iqeeAawAL~NLa~  517 (2102)
T PLN03200        498 ETGSQKAKEDSATVLWNLCC  517 (2102)
T ss_pred             cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999987766

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=94.22  E-value=0.086  Score=55.58  Aligned_cols=77  Identities=16%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHHHHHHH-hcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEAIQAML-DAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~EaVkaLL-daGvvP~Ll~lLs~~   77 (151)
                      ...|++.|.|-.-||..++..+++.|  |.++  |             +||-+++..++.+.++ ++|++|.|+.+|.+.
T Consensus       463 Q~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg  542 (2102)
T PLN03200        463 QEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG  542 (2102)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC
Confidence            34678889999999999999999999  7644  3             8999998766678777 789999999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 041564           78 DEQVADTMLLCKAEA   92 (151)
Q Consensus        78 D~KVVEAcLRcLr~~   92 (151)
                      +.+..+-++.+|..+
T Consensus       543 d~~~q~~Aa~AL~nL  557 (2102)
T PLN03200        543 GPKGQEIAAKTLTKL  557 (2102)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988776

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=93.58  E-value=0.083  Score=32.71  Aligned_cols=44  Identities=18%  Similarity=0.253  Sum_probs=37.3

Q ss_pred             hcccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHH
Q 041564           46 LPPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKA   90 (151)
Q Consensus        46 LVLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr   90 (151)
                      .+||.++-+..+ .+. .-..++|.|+.+|.++++.|-++++.||.
T Consensus         9 ~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg   53 (55)
T PF13513_consen    9 WALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALG   53 (55)
T ss_dssp             HHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred             HHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            478998877777 555 67789999999999999999999999885

...

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.46  E-value=0.12  Score=47.99  Aligned_cols=73  Identities=21%  Similarity=0.231  Sum_probs=62.9

Q ss_pred             hHHhhhhhhhcccchhHhHHHHhh--hh--hhh--------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564           18 RLNNRLKNQIIGSQTKKLSFLKKL--YR--LIL--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD   78 (151)
Q Consensus        18 rAlr~IKNqIIGNntKKlsfI~lG--Pr--lIL--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D   78 (151)
                      =|+|.|=|-+=||--|=-..|..|  |.  .+|              +|+=.+.|..+ +++++|+|++|.|+.+|+..|
T Consensus       298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e  377 (514)
T KOG0166|consen  298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE  377 (514)
T ss_pred             HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc
Confidence            489999999999999999999998  54  112              78888899999 999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 041564           79 EQVADTMLLCKA   90 (151)
Q Consensus        79 ~KVVEAcLRcLr   90 (151)
                      -+.=-.|+-++.
T Consensus       378 f~~rKEAawaIs  389 (514)
T KOG0166|consen  378 FDIRKEAAWAIS  389 (514)
T ss_pred             hHHHHHHHHHHH
Confidence            887777777765

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.91  E-value=0.24  Score=46.07  Aligned_cols=73  Identities=19%  Similarity=0.197  Sum_probs=62.5

Q ss_pred             HHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccc-cChHH-HHHHHhcCChHHHHhhhccCCH
Q 041564           19 LNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFT-CGFEA-IQAMLDAGLFPDLSLIFSRRDE   79 (151)
Q Consensus        19 Alr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFA-cG~Ea-VkaLLdaGvvP~Ll~lLs~~D~   79 (151)
                      |.-.|-|-.=||..|.-.+|..|  |.++  |             +|+=.+ -|+++ ++-|++.|.+++|-.+|...|.
T Consensus       342 AcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~  421 (514)
T KOG0166|consen  342 ACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDV  421 (514)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCCh
Confidence            56678898889999999999999  7644  3             555444 77788 9999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 041564           80 QVADTMLLCKAE   91 (151)
Q Consensus        80 KVVEAcLRcLr~   91 (151)
                      +++..++-++.-
T Consensus       422 ~ii~v~Ld~l~n  433 (514)
T KOG0166|consen  422 KIILVALDGLEN  433 (514)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.24  E-value=0.27  Score=28.30  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             ChHHHHhhhccCCHHHHHHHHHHHHHh
Q 041564           66 LFPDLSLIFSRRDEQVADTMLLCKAEA   92 (151)
Q Consensus        66 vvP~Ll~lLs~~D~KVVEAcLRcLr~~   92 (151)
                      ++|.++++|++++++|=++++.||...
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i   27 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAI   27 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            379999999999999999999999764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=91.91  E-value=0.058  Score=49.93  Aligned_cols=44  Identities=16%  Similarity=0.323  Sum_probs=41.1

Q ss_pred             cccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHH
Q 041564           47 PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKA   90 (151)
Q Consensus        47 VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr   90 (151)
                      +|--.|.|+.+ -+-++|+|+||.++++|+.++..|-|-+.-+|-
T Consensus       138 alTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALG  182 (526)
T COG5064         138 ALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALG  182 (526)
T ss_pred             HHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhc
Confidence            88889999999 999999999999999999999999999888875

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=90.26  E-value=0.32  Score=45.22  Aligned_cols=73  Identities=22%  Similarity=0.277  Sum_probs=61.2

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hh--hhh-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YR--LIL-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD   78 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--Pr--lIL-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D   78 (151)
                      .-|+|-+-|-|-|+.-|-.-.|..|  +.  .+|             .|.-.+.|..+ +++++|++.+|.|+.+|+..|
T Consensus       303 tPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae  382 (526)
T COG5064         303 TPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE  382 (526)
T ss_pred             CHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH
Confidence            3578999999999999999999999  32  333             88889999999 999999999999999999988


Q ss_pred             HHHH-HHHHHHH
Q 041564           79 EQVA-DTMLLCK   89 (151)
Q Consensus        79 ~KVV-EAcLRcL   89 (151)
                      -|.- |||---.
T Consensus       383 ~k~kKEACWAis  394 (526)
T COG5064         383 YKIKKEACWAIS  394 (526)
T ss_pred             HHHHHHHHHHHH
Confidence            8774 5664433

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.61  E-value=1.3  Score=41.49  Aligned_cols=47  Identities=13%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             cccccccChHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564           47 PPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAG   93 (151)
Q Consensus        47 VLGSFAcG~EaVkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~   93 (151)
                      +||-+|.-++=.+.++++|.+|+|+.+|+++-.+++-|..-|+|-.+
T Consensus       274 ALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis  320 (550)
T KOG4224|consen  274 ALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS  320 (550)
T ss_pred             HHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc
Confidence            88888887777999999999999999999999999999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.1
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.91
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.84
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.78
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.77
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.74
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.68
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.53
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.52
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	97.42
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.41
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.3
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.2
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.15
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.04
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.03
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	97.02
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	96.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	96.84
3nmz_A	458	APC variant protein; protein-protein complex, arma	96.81
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	96.77
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	96.75
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	96.09
3nmz_A	458	APC variant protein; protein-protein complex, arma	95.53
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	95.51
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	95.37
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	95.13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.99
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	94.88
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	94.85
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	94.85
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	94.64
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	94.53
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	93.44
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	91.51

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.10  E-value=8e-06  Score=57.42  Aligned_cols=79  Identities=23%  Similarity=0.301  Sum_probs=70.0

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      +..|...|.|-..++...+..+++.|  |.++  |             +||.++.+.++ .+.+++.|++|.|+.+|.++
T Consensus        29 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~  108 (210)
T 4db6_A           29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP  108 (210)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence            45678899999989999999999988  6533  2             89999999888 89999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      |+.+.+.++.+|..++.
T Consensus       109 ~~~v~~~a~~~L~~l~~  125 (210)
T 4db6_A          109 NEQILQEALWALSNIAS  125 (210)
T ss_dssp             CHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHc
Confidence            99999999999998874

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.91  E-value=1.8e-05  Score=55.56  Aligned_cols=79  Identities=24%  Similarity=0.286  Sum_probs=68.5

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      +..|+..|.|-.-++...+..+++.|  |.++  |             +|+.++.+.++ .+.++++|++|.|+++|.++
T Consensus        71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  150 (210)
T 4db6_A           71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP  150 (210)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC
Confidence            34568888898889989999999988  6533  2             89999988888 89999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      |+++.+.++.+|..+..
T Consensus       151 ~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A          151 NEQILQEALWALSNIAS  167 (210)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHc
Confidence            99999999999998764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.84  E-value=2.5e-05  Score=56.13  Aligned_cols=81  Identities=20%  Similarity=0.274  Sum_probs=68.3

Q ss_pred             cchhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhcc
Q 041564           15 SSSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSR   76 (151)
Q Consensus        15 ~s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~   76 (151)
                      .+..|...+.|..-++...+..+++.|  |.++  |             +|+.++.+.++ .+.+++.|++|.|+++|.+
T Consensus        28 ~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~  107 (252)
T 4db8_A           28 EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS  107 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC
Confidence            455778888887777777778888888  6533  2             89999998888 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccc
Q 041564           77 RDEQVADTMLLCKAEAGGM   95 (151)
Q Consensus        77 ~D~KVVEAcLRcLr~~~~~   95 (151)
                      +|+.+.+.|+.+|..++.-
T Consensus       108 ~~~~v~~~a~~~L~~l~~~  126 (252)
T 4db8_A          108 PNEQILQEALWALSNIASG  126 (252)
T ss_dssp             SCHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHhhcC
Confidence            9999999999999988643

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.78  E-value=5.2e-05  Score=53.48  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=68.9

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      +..|+..+.|..-++...+..+++.|  |.++  |             +|+.++.+.++ .+.+.+.|++|.|++++.++
T Consensus       145 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~  224 (252)
T 4hxt_A          145 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST  224 (252)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC
Confidence            45568888898888888888888888  5422  2             89999998888 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcccc
Q 041564           78 DEQVADTMLLCKAEAGGMH   96 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~~h   96 (151)
                      |+.+.+.++.+|+-+...+
T Consensus       225 ~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          225 DSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHcCC
Confidence            9999999999999887544

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.77  E-value=1.6e-05  Score=65.65  Aligned_cols=59  Identities=12%  Similarity=0.345  Sum_probs=52.9

Q ss_pred             HHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcc
Q 041564           36 SFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        36 sfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~   94 (151)
                      .+|+.|  |+++  |              +|+.+|+|.++ .++++++|++|.|+++|.++++.+.|.|+.||...+.
T Consensus        95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~  172 (510)
T 3ul1_B           95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  172 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            577888  8755  3              89999999999 9999999999999999999999999999999987764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.74  E-value=6.1e-05  Score=54.12  Aligned_cols=79  Identities=24%  Similarity=0.286  Sum_probs=69.3

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      +..|+..|.|-.-|+...+..+++.|  |.++  |             +|+.++.+.+. .+.+++.|++|.|+++|.++
T Consensus        71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  150 (252)
T 4db8_A           71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP  150 (252)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC
Confidence            44568889999999999999999988  5532  2             89999999888 69999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      |+.+.+.++.+|..++.
T Consensus       151 ~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A          151 NEQILQEALWALSNIAS  167 (252)
T ss_dssp             CHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHc
Confidence            99999999999998875

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.68  E-value=2.5e-05  Score=62.77  Aligned_cols=78  Identities=10%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      +.+|+..|-|.+=|+...+..|++.|  |.++  |             +|+.++.|.++ .+.++++|++|.|+.+|.++
T Consensus       142 ~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~  221 (296)
T 1xqr_A          142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE  221 (296)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC
Confidence            45678888888888888888999887  6533  2             88999988887 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhc
Q 041564           78 DEQVADTMLLCKAEAG   93 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~   93 (151)
                      |.++.|.++++|....
T Consensus       222 d~~v~~~al~aL~~l~  237 (296)
T 1xqr_A          222 HSPFHEHVLGALCSLV  237 (296)
T ss_dssp             CSTHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHH
Confidence            9999999999996543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.53  E-value=0.00018  Score=50.75  Aligned_cols=79  Identities=19%  Similarity=0.215  Sum_probs=67.3

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      +..|+..+.|-.-++...+..+++.|  |.++  |             +|+.++.+.++ .+.+++.|++|.|+.+|.++
T Consensus       103 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  182 (252)
T 4hxt_A          103 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST  182 (252)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC
Confidence            34567778888878888888888887  5422  2             89999999888 89999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      |+.+.+.++++|..+..
T Consensus       183 ~~~v~~~a~~~L~~l~~  199 (252)
T 4hxt_A          183 DSEVQKEAARALANIAS  199 (252)
T ss_dssp             CHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHc
Confidence            99999999999998875

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.52  E-value=0.0001  Score=58.23  Aligned_cols=80  Identities=8%  Similarity=0.028  Sum_probs=69.4

Q ss_pred             hHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhc-cCC
Q 041564           18 RLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFS-RRD   78 (151)
Q Consensus        18 rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs-~~D   78 (151)
                      -|..+|.|...++...|..+++.|  |.++  |             +|+.++.+.++ -.++.++|++|.|+++|. .++
T Consensus        29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~  108 (233)
T 3tt9_A           29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRD  108 (233)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCC
Confidence            467889999999999999999998  7644  3             89999998777 889999999999999997 579


Q ss_pred             HHHHHHHHHHHHHhccccc
Q 041564           79 EQVADTMLLCKAEAGGMHM   97 (151)
Q Consensus        79 ~KVVEAcLRcLr~~~~~h~   97 (151)
                      ..+-|.++.+|..++..+.
T Consensus       109 ~~~~e~a~~aL~nLS~~~~  127 (233)
T 3tt9_A          109 LETKKQITGLLWNLSSNDK  127 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHHHHHcChh
Confidence            9999999999999987654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=97.42  E-value=0.0002  Score=58.61  Aligned_cols=91  Identities=12%  Similarity=0.059  Sum_probs=66.3

Q ss_pred             HHhhhhhhhc---ccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           19 LNNRLKNQII---GSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        19 Alr~IKNqII---GNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      |...|.|--.   |+...+..+++.|  |.++  |             +|+.++.|.++ .+.++++|++|.|+.+|.+.
T Consensus       238 A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~  317 (354)
T 3nmw_A          238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK  317 (354)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence            4445666554   7888888899988  6644  2             88889988888 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccccccc-ccceecCCCC
Q 041564           78 DEQVADTMLLCKAEAGGMHMRQ-SSNVEVPNGS  109 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~~h~~~-~~~~~~~~~~  109 (151)
                      ++++.+.++.+|+.+.....-+ +...-+|.||
T Consensus       318 ~~~i~~~A~~aL~nL~~~~~~~~~~~~~~~~~~  350 (354)
T 3nmw_A          318 HKMIAMGSAAALRNLMANRPAKYKDANIMSPGS  350 (354)
T ss_dssp             SHHHHHHHHHHHHHHHTTCCGGGC---------
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHhhhcccCCcC
Confidence            9999999999999887664332 2333455554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.41  E-value=0.00017  Score=59.51  Aligned_cols=60  Identities=12%  Similarity=0.318  Sum_probs=53.1

Q ss_pred             hHHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcc
Q 041564           35 LSFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        35 lsfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~   94 (151)
                      -.+|+.|  |+++  |              +|+.+|+|.++ .++++++|++|.|+.+|.++++.+.|.|+.+|.-.+.
T Consensus       113 ~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~  191 (529)
T 3tpo_A          113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  191 (529)
T ss_dssp             HHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            4678888  8744  2              89999999999 9999999999999999999999999999999987764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.30  E-value=0.00041  Score=56.89  Aligned_cols=80  Identities=4%  Similarity=-0.027  Sum_probs=67.2

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhc-c
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFS-R   76 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs-~   76 (151)
                      ...|...|.|--.++...|..+++.|  |.++  |             +|..++.+.++ -..++++|++|.|+++|. +
T Consensus        19 q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~   98 (457)
T 1xm9_A           19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT   98 (457)
T ss_dssp             HHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC
Confidence            45678899998888888888899998  7644  3             88888888666 777889999999999998 8


Q ss_pred             CCHHHHHHHHHHHHHhccc
Q 041564           77 RDEQVADTMLLCKAEAGGM   95 (151)
Q Consensus        77 ~D~KVVEAcLRcLr~~~~~   95 (151)
                      +++.+.|.++.+|..++.-
T Consensus        99 ~~~~~~~~a~~aL~nLa~~  117 (457)
T 1xm9_A           99 GNAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             CCHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHhcC
Confidence            8999999999999877753

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.20  E-value=0.00044  Score=55.50  Aligned_cols=78  Identities=13%  Similarity=-0.003  Sum_probs=66.4

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhcc
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSR   76 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~   76 (151)
                      +..|...|-|..=+|...+..+++.|  |.++  |              +|++++.|.+. .++++++|++|.|+.+|.+
T Consensus        99 r~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~  178 (296)
T 1xqr_A           99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ  178 (296)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC
Confidence            34578888888878888888899988  5533  2              89999999988 8999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 041564           77 RDEQVADTMLLCKAEAG   93 (151)
Q Consensus        77 ~D~KVVEAcLRcLr~~~   93 (151)
                      +|.++-..++.+|.-+.
T Consensus       179 ~d~~v~~~A~~aLs~L~  195 (296)
T 1xqr_A          179 QVQKLKVKSAFLLQNLL  195 (296)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999998764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.15  E-value=0.00053  Score=56.58  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=67.0

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD   78 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D   78 (151)
                      ..|++.|.|-.-|+...+..++..|  |.++  |             +|+.++.|.++ .+.++++|++|.|+.+|.+++
T Consensus       311 ~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~  390 (529)
T 3tpo_A          311 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  390 (529)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence            3468889999999999999999998  4422  2             89999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 041564           79 EQVADTMLLCKAEAG   93 (151)
Q Consensus        79 ~KVVEAcLRcLr~~~   93 (151)
                      .++...|+.+|+-+.
T Consensus       391 ~~v~~~A~~aL~nl~  405 (529)
T 3tpo_A          391 FKTQKAAAWAITNYT  405 (529)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.07  E-value=0.0007  Score=54.53  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=67.0

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhcc
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSR   76 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~   76 (151)
                      +..|+..|-|..-|+......+++.|  |.++  |              +|+.++.|.++ ++.++++|++|.|+.+|.+
T Consensus       303 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~  382 (528)
T 4b8j_A          303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT  382 (528)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc
Confidence            34578889999999988888888777  5422  2              89999999888 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcc
Q 041564           77 RDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        77 ~D~KVVEAcLRcLr~~~~   94 (151)
                      .|.++.+.++.+|.-+..
T Consensus       383 ~~~~v~~~a~~aL~nl~~  400 (528)
T 4b8j_A          383 AEFDIKKEAAWAISNATS  400 (528)
T ss_dssp             SCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHc
Confidence            999999999999987653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.04  E-value=0.00078  Score=51.69  Aligned_cols=77  Identities=25%  Similarity=0.300  Sum_probs=63.9

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD   78 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D   78 (151)
                      ..|+..+.|-.-|+..++..+++.|  |.++  |             +||.++.|.++ .+.++++|++|.|+.+|.+++
T Consensus       252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~  331 (450)
T 2jdq_A          252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE  331 (450)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence            4567788888888777777777776  4422  2             89999999988 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 041564           79 EQVADTMLLCKAEAG   93 (151)
Q Consensus        79 ~KVVEAcLRcLr~~~   93 (151)
                      +++..+++.+|.-+.
T Consensus       332 ~~v~~~a~~~L~~l~  346 (450)
T 2jdq_A          332 FRTRKEAAWAITNAT  346 (450)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.03  E-value=0.00081  Score=55.58  Aligned_cols=77  Identities=18%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD   78 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D   78 (151)
                      ..+++.|.|-.-|+...+..++..|  |.++  |             +|+-++.|.++ .+.++++|++|.|+.+|.+.|
T Consensus       292 ~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~  371 (510)
T 3ul1_B          292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  371 (510)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             hHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence            4568889999999999999999998  4422  2             89999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 041564           79 EQVADTMLLCKAEAG   93 (151)
Q Consensus        79 ~KVVEAcLRcLr~~~   93 (151)
                      .++...|+.+|+-+.
T Consensus       372 ~~v~~~Aa~aL~Nl~  386 (510)
T 3ul1_B          372 FKTQKEAAWAITNYT  386 (510)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=97.02  E-value=0.0011  Score=53.73  Aligned_cols=77  Identities=21%  Similarity=0.233  Sum_probs=65.2

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD   78 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D   78 (151)
                      ..|+..|.|-.-|+......++..|  |.++  |             +||.++.|.++ ++.++++|++|.|+.+|.+++
T Consensus       317 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  396 (530)
T 1wa5_B          317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE  396 (530)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence            3567888888888888777788777  5422  2             89999998888 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 041564           79 EQVADTMLLCKAEAG   93 (151)
Q Consensus        79 ~KVVEAcLRcLr~~~   93 (151)
                      +++.++++.+|.-+.
T Consensus       397 ~~v~~~a~~aL~~l~  411 (530)
T 1wa5_B          397 YKTKKEACWAISNAS  411 (530)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=96.93  E-value=0.0012  Score=50.59  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=62.7

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccC-hHH-HHHHHhcCChHHHHhhhcc
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCG-FEA-IQAMLDAGLFPDLSLIFSR   76 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG-~Ea-VkaLLdaGvvP~Ll~lLs~   76 (151)
                      +..|+..|.|-.-|+......+++.|  |.++  |             +||.++.+ .++ ++.+++.|++|.|+.+|.+
T Consensus       293 r~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~  372 (450)
T 2jdq_A          293 KKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV  372 (450)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC
Confidence            34567888888878887777777766  5422  2             88888865 556 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 041564           77 RDEQVADTMLLCKAEAG   93 (151)
Q Consensus        77 ~D~KVVEAcLRcLr~~~   93 (151)
                      +|.++.+.++.+|....
T Consensus       373 ~~~~v~~~a~~aL~~l~  389 (450)
T 2jdq_A          373 MDSKIVQVALNGLENIL  389 (450)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999987654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=96.84  E-value=0.0015  Score=52.58  Aligned_cols=78  Identities=15%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC-
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR-   77 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~-   77 (151)
                      ..|+..+.|-.-|+..+...++..|  |+++  |             +||.++.|.+. .+.++++|++|.|+.+|.++ 
T Consensus       262 ~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~  341 (528)
T 4b8j_A          262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL  341 (528)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC
Confidence            4567778888888888878888877  6533  2             89999999999 99999999999999999998 


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      ++.+.+.++.+|.-+..
T Consensus       342 ~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          342 KKSIKKEACWTISNITA  358 (528)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHC
Confidence            99999999999988764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=96.81  E-value=0.0014  Score=56.11  Aligned_cols=76  Identities=12%  Similarity=0.061  Sum_probs=63.6

Q ss_pred             HHhhhhhhhc---ccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           19 LNNRLKNQII---GSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        19 Alr~IKNqII---GNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      |.-.|.|--.   |+...+..+++.|  |.++  |             +|+-++.|.++ .+.++++|++|.|+.+|.+.
T Consensus       354 A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~  433 (458)
T 3nmz_A          354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK  433 (458)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS
T ss_pred             HHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence            4455666554   8888898999988  6644  2             88889988888 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      ++++.+.|+.+|+-+.-
T Consensus       434 ~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          434 HKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHc
Confidence            99999999999998754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=96.77  E-value=0.0022  Score=51.95  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=64.9

Q ss_pred             hHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCCH
Q 041564           18 RLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDE   79 (151)
Q Consensus        18 rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~   79 (151)
                      .|+..|.|-.-++......+++.|  |.++  |             +||.++.|.++ .+.++++|++|.|+.+|.++++
T Consensus       276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  355 (530)
T 1wa5_B          276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE  355 (530)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH
Confidence            467777887777777777777777  6532  2             89999999988 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 041564           80 QVADTMLLCKAEAGG   94 (151)
Q Consensus        80 KVVEAcLRcLr~~~~   94 (151)
                      .+.++++.+|..++.
T Consensus       356 ~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          356 NIKKEACWTISNITA  370 (530)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998875

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=96.75  E-value=0.0018  Score=57.61  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccC--hHHHHHHHhcCChHHHHhhhcc-
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCG--FEAIQAMLDAGLFPDLSLIFSR-   76 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG--~EaVkaLLdaGvvP~Ll~lLs~-   76 (151)
                      ..|...|.|-..++...|..+++.|  |.++  |             +|+.+|.|  .++-.++.++|++|.|+++|.+ 
T Consensus        66 ~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~  145 (584)
T 3l6x_A           66 SNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA  145 (584)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence            4578889999999999999999999  7654  3             89999987  3448889999999999999986 


Q ss_pred             CCHHHHHHHHHHHHHhcc
Q 041564           77 RDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        77 ~D~KVVEAcLRcLr~~~~   94 (151)
                      .+..+-|.++.||..++.
T Consensus       146 ~~~~~~e~aa~aL~nLS~  163 (584)
T 3l6x_A          146 RDMDLTEVITGTLWNLSS  163 (584)
T ss_dssp             CSHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            688899999999988886

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=96.09  E-value=0.0059  Score=49.96  Aligned_cols=76  Identities=11%  Similarity=-0.040  Sum_probs=58.7

Q ss_pred             HHhhhhhhhcccchhHhHHH-Hhh--hhhh--h-----------------ccccccc---ChHH-HHHHHhcCChHHHHh
Q 041564           19 LNNRLKNQIIGSQTKKLSFL-KKL--YRLI--L-----------------PPSRFTC---GFEA-IQAMLDAGLFPDLSL   72 (151)
Q Consensus        19 Alr~IKNqIIGNntKKlsfI-~lG--PrlI--L-----------------VLGSFAc---G~Ea-VkaLLdaGvvP~Ll~   72 (151)
                      |+.-+.|-..++...|..+. ..|  |.++  |                 +|..++.   |.++ .+.+.++|++|.|+.
T Consensus       191 A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~  270 (354)
T 3nmw_A          191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ  270 (354)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHH
Confidence            45677888777766666776 567  5422  1                 3444444   6677 999999999999999


Q ss_pred             hhccCCHHHHHHHHHHHHHhcc
Q 041564           73 IFSRRDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        73 lLs~~D~KVVEAcLRcLr~~~~   94 (151)
                      +|.+++.++.+.|+++|..++.
T Consensus       271 lL~~~~~~v~~~A~~aL~nLa~  292 (354)
T 3nmw_A          271 HLKSHSLTIVSNACGTLWNLSA  292 (354)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTS
T ss_pred             HHcCCChHHHHHHHHHHHHHhC
Confidence            9999999999999999998874

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=95.53  E-value=0.019  Score=49.06  Aligned_cols=78  Identities=14%  Similarity=0.092  Sum_probs=61.3

Q ss_pred             hhHHhhhhhhhcccchhHhHHHH-hh--hhhh--h-------------cccccccCh-HH-HHHHHhcCChHHHHhhh-c
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLK-KL--YRLI--L-------------PPSRFTCGF-EA-IQAMLDAGLFPDLSLIF-S   75 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~-lG--PrlI--L-------------VLGSFAcG~-Ea-VkaLLdaGvvP~Ll~lL-s   75 (151)
                      ..|...|.|--.|+...|..+.. .|  |.++  |             +|+.++++. ++ -+.+.++|++|.|+++| .
T Consensus       218 ~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~  297 (458)
T 3nmz_A          218 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE  297 (458)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc
Confidence            45677888988888877777654 35  6543  2             888889873 44 78889999999999975 5


Q ss_pred             cCCHHHHHHHHHHHHHhcc
Q 041564           76 RRDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        76 ~~D~KVVEAcLRcLr~~~~   94 (151)
                      +.++.+.+.++++|.-++.
T Consensus       298 s~~~~v~~~A~~aL~nLs~  316 (458)
T 3nmz_A          298 VKKESTLKSVLSALWNLSA  316 (458)
T ss_dssp             CCSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc
Confidence            6789999999999998876

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=95.51  E-value=0.017  Score=45.38  Aligned_cols=80  Identities=8%  Similarity=-0.001  Sum_probs=59.5

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh----------------hcccccccChHHHHHHHhcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI----------------LPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI----------------LVLGSFAcG~EaVkaLLdaGvvP~Ll~lLs~~   77 (151)
                      +.+|+..+.|-..++..++..+-..|  |.++                -+|+.++...+..+.+.+.|++|.|+++|.++
T Consensus        34 ~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~  113 (529)
T 1jdh_A           34 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP  113 (529)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCC
Confidence            55778888887776654433222223  3211                17888887766588899999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccc
Q 041564           78 DEQVADTMLLCKAEAGGM   95 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~~   95 (151)
                      |+.+.+.++++|+..+..
T Consensus       114 ~~~v~~~a~~~L~~l~~~  131 (529)
T 1jdh_A          114 VDSVLFYAITTLHNLLLH  131 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcC
Confidence            999999999999988654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=95.37  E-value=0.022  Score=47.87  Aligned_cols=78  Identities=14%  Similarity=0.014  Sum_probs=63.1

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC-
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR-   77 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~-   77 (151)
                      ..|+..|.|-..++...+..+++.|  |.++  |             +|+.+++|.++ -+.+.+.|++|.|+++|.+. 
T Consensus       116 ~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~  195 (644)
T 2z6h_A          116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT  195 (644)
T ss_dssp             HHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC
Confidence            4567888888888777788888887  6533  2             67788888888 88899999999999999665 


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      ++++.++++++|+.++.
T Consensus       196 ~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          196 YEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             CHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence            57889999999888764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=95.13  E-value=0.023  Score=50.57  Aligned_cols=74  Identities=15%  Similarity=0.127  Sum_probs=57.2

Q ss_pred             hHHhhhhhhhcccchhHhHHHHhh--hhhh--h---------------------cccccccChHH-HHHHHhcCChHHHH
Q 041564           18 RLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L---------------------PPSRFTCGFEA-IQAMLDAGLFPDLS   71 (151)
Q Consensus        18 rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L---------------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll   71 (151)
                      .|..-|.|...+.+.|  ..|..|  |+++  |                     +|+.+..|.++ .++++++|++|.|+
T Consensus       374 ~A~~aL~nLs~~~~~~--~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv  451 (584)
T 3l6x_A          374 AASGALRNLAVDARNK--ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLV  451 (584)
T ss_dssp             HHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHhCChhHH--HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHH
Confidence            3567788888887655  466776  7644  2                     34445566666 99999999999999


Q ss_pred             hhhccC--CHHHHHHHHHHHHHhc
Q 041564           72 LIFSRR--DEQVADTMLLCKAEAG   93 (151)
Q Consensus        72 ~lLs~~--D~KVVEAcLRcLr~~~   93 (151)
                      ++|.+.  .++++++|...|+.+-
T Consensus       452 ~LL~s~~~~~~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          452 LINKSGNRSEKEVRAAALVLQTIW  475 (584)
T ss_dssp             HHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCChHHHHHHHHHHHHHH
Confidence            999775  8999999999999774

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=94.99  E-value=0.012  Score=48.26  Aligned_cols=49  Identities=8%  Similarity=-0.092  Sum_probs=43.6

Q ss_pred             cccccccChHHHH-HHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhccc
Q 041564           47 PPSRFTCGFEAIQ-AMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGM   95 (151)
Q Consensus        47 VLGSFAcG~EaVk-aLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~   95 (151)
                      +|+.++.+.+..+ .+.++|++|.|+++|.++++.+.+.++.+|+.++.-
T Consensus        25 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~   74 (457)
T 1xm9_A           25 YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR   74 (457)
T ss_dssp             HHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            7777887777755 999999999999999999999999999999988763

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=94.88  E-value=0.021  Score=50.35  Aligned_cols=78  Identities=14%  Similarity=0.097  Sum_probs=60.3

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      +..|...++| +..+...|..+++.|  |.++  |             +|+.++.+.++ -+.+.++|++|.|+.+|.++
T Consensus       210 r~~Aa~aL~~-Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~  288 (780)
T 2z6g_A          210 ARCTSGTLHN-LSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT  288 (780)
T ss_dssp             HHHHHHHHHH-HHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred             HHHHHHHHHH-HhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence            3456777888 444445566777777  5533  2             88888888777 77777999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      +.++.+.++.||+.++.
T Consensus       289 ~~~v~~~a~~aL~~La~  305 (780)
T 2z6g_A          289 NVKFLAITTDCLQILAY  305 (780)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999987765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=94.85  E-value=0.019  Score=53.10  Aligned_cols=78  Identities=13%  Similarity=-0.029  Sum_probs=62.6

Q ss_pred             hHHhhhhhhhcccchhHhHHHH-hh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC-
Q 041564           18 RLNNRLKNQIIGSQTKKLSFLK-KL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR-   77 (151)
Q Consensus        18 rAlr~IKNqIIGNntKKlsfI~-lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~-   77 (151)
                      .|...|-|-.-|+..+...+++ .|  |.++  |             +++-+++|.++ .+.+.++|++|.|.++|..+ 
T Consensus       684 ~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d  763 (810)
T 3now_A          684 ACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPD  763 (810)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcc
Confidence            3567777888888888888888 66  6533  2             77778888777 99999999999999999655 


Q ss_pred             --CHHHHHHHHHHHHHhccc
Q 041564           78 --DEQVADTMLLCKAEAGGM   95 (151)
Q Consensus        78 --D~KVVEAcLRcLr~~~~~   95 (151)
                        +.+++|.++.+|.-+-.+
T Consensus       764 ~~~~~i~e~Al~aL~~ll~~  783 (810)
T 3now_A          764 DTRAKAREVATQCLAAAERY  783 (810)
T ss_dssp             STTHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHhC
Confidence              899999999999876433

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=94.85  E-value=0.042  Score=43.14  Aligned_cols=78  Identities=14%  Similarity=0.014  Sum_probs=60.3

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC-
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR-   77 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~-   77 (151)
                      ..|+..+.|...++...+..+++.|  |.++  |             +|+.++.|.++ -+.+.+.|++|.|+.+|.++ 
T Consensus       119 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~  198 (529)
T 1jdh_A          119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT  198 (529)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            4567788888887766777787777  6533  2             67788888777 88889999999999999554 


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      ++.+.+++.++|+.++.
T Consensus       199 ~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          199 YEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             CHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence            67788888888877763

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=94.64  E-value=0.023  Score=47.70  Aligned_cols=77  Identities=14%  Similarity=0.061  Sum_probs=58.3

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD   78 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D   78 (151)
                      ..|...++|-... ..-+..+++.|  |.++  |             +|+.++.+.++ .+.+.+.|++|.|+.+|.+++
T Consensus        75 ~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~  153 (644)
T 2z6h_A           75 RCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN  153 (644)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC
Confidence            3456677764433 34566677777  5533  2             78888887767 778889999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 041564           79 EQVADTMLLCKAEAGG   94 (151)
Q Consensus        79 ~KVVEAcLRcLr~~~~   94 (151)
                      +++..++++||+..+.
T Consensus       154 ~~~~~~a~~~L~~La~  169 (644)
T 2z6h_A          154 VKFLAITTDCLQILAY  169 (644)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=94.53  E-value=0.016  Score=45.71  Aligned_cols=50  Identities=6%  Similarity=-0.172  Sum_probs=43.4

Q ss_pred             cccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcccc
Q 041564           47 PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMH   96 (151)
Q Consensus        47 VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~h   96 (151)
                      .|..++.+.+. -+.+.++|++|.|+++|.++++.+-+.++.+|+-++.-+
T Consensus        33 ~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~   83 (233)
T 3tt9_A           33 FIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED   83 (233)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            55667777777 778999999999999999999999999999999987643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=93.44  E-value=0.085  Score=48.85  Aligned_cols=82  Identities=13%  Similarity=0.070  Sum_probs=67.6

Q ss_pred             HHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHHHHHHHh-cCChHHHHhhhccCCHH
Q 041564           19 LNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEAIQAMLD-AGLFPDLSLIFSRRDEQ   80 (151)
Q Consensus        19 Alr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~EaVkaLLd-aGvvP~Ll~lLs~~D~K   80 (151)
                      |+..+.|-.-++...+..+++.|  |+++  |             +|+.++.+.+..+.+++ +|++|.|+.+|.++|..
T Consensus       601 Al~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~  680 (810)
T 3now_A          601 SLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE  680 (810)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence            67788888888877777788888  7633  2             88999999888666666 89999999999999999


Q ss_pred             HHHHHHHHHHHhcccccccc
Q 041564           81 VADTMLLCKAEAGGMHMRQS  100 (151)
Q Consensus        81 VVEAcLRcLr~~~~~h~~~~  100 (151)
                      +-++++.+|.-++..+..|.
T Consensus       681 vq~~Aa~ALanLt~~s~~~~  700 (810)
T 3now_A          681 TATACAGALAIITSVSVKCC  700 (810)
T ss_dssp             HHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHH
Confidence            99999999999987655443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=91.51  E-value=0.26  Score=43.39  Aligned_cols=77  Identities=9%  Similarity=-0.025  Sum_probs=56.7

Q ss_pred             hHHhhhhhhhcccchhHhHHHHhh--hhhh--h---------------cccccccChHH----HHHHHhcCChHHHHhhh
Q 041564           18 RLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L---------------PPSRFTCGFEA----IQAMLDAGLFPDLSLIF   74 (151)
Q Consensus        18 rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L---------------VLGSFAcG~Ea----VkaLLdaGvvP~Ll~lL   74 (151)
                      .|...|.|-.-++...+..+++.|  |+++  |               +||.++.+..+    -..+.++|++|.|+.+|
T Consensus       418 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL  497 (780)
T 2z6g_A          418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL  497 (780)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHh
Confidence            345566777777777777777776  5422  1               77878765433    24788999999999999


Q ss_pred             ccCCH-HHHHHHHHHHHHhcc
Q 041564           75 SRRDE-QVADTMLLCKAEAGG   94 (151)
Q Consensus        75 s~~D~-KVVEAcLRcLr~~~~   94 (151)
                      .+++. .+.++++.+|+.++.
T Consensus       498 ~~~~~~~v~~~A~~aL~nLa~  518 (780)
T 2z6g_A          498 HPPSHWPLIKATVGLIRNLAL  518 (780)
T ss_dssp             STTCCHHHHHHHHHHHHHHHS
T ss_pred             cCCChHHHHHHHHHHHHHHhc
Confidence            88864 999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.48
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.86
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.85
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.45
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.36
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.03
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.46
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	87.39

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.7e-05  Score=54.37  Aligned_cols=79  Identities=4%  Similarity=-0.025  Sum_probs=67.3

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhc-c
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFS-R   76 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs-~   76 (151)
                      ...|.+.|+|.-.||..-|..+++.|  |.++  |             +|+.++.+.++ -+.+.++|++|.|+.++. .
T Consensus        19 ~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~   98 (457)
T d1xm9a1          19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT   98 (457)
T ss_dssp             HHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhcc
Confidence            45679999999999999999999999  7644  2             78888877777 788999999999999885 4


Q ss_pred             CCHHHHHHHHHHHHHhcc
Q 041564           77 RDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        77 ~D~KVVEAcLRcLr~~~~   94 (151)
                      .++.+.+.++.++.....
T Consensus        99 ~~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          99 GNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             CCHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHh
Confidence            588899999999988764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=6.9e-05  Score=54.63  Aligned_cols=80  Identities=11%  Similarity=0.246  Sum_probs=62.7

Q ss_pred             cchhHHhhhhhhh-cccchhHhHHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhh
Q 041564           15 SSSRLNNRLKNQI-IGSQTKKLSFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIF   74 (151)
Q Consensus        15 ~s~rAlr~IKNqI-IGNntKKlsfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lL   74 (151)
                      ....|+..++|.. +..+.+--.+++.|  |.++  |              +|+.+|.+.++ .+.+++.|++|.|+.+|
T Consensus        29 ~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L  108 (434)
T d1q1sc_          29 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL  108 (434)
T ss_dssp             HHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhcc
Confidence            3455778888864 33333334677877  6533  2              78888999888 99999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHHhcc
Q 041564           75 SRRDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        75 s~~D~KVVEAcLRcLr~~~~   94 (151)
                      .+++..+.+.|+.+|.-.+.
T Consensus       109 ~~~~~~~~~~a~~~L~nl~~  128 (434)
T d1q1sc_         109 ASPHAHISEQAVWALGNIAG  128 (434)
T ss_dssp             TCSCHHHHHHHHHHHHHHHT
T ss_pred             ccCCHHHHHHHHHHHHHHhc
Confidence            99999999999999987654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4.2e-05  Score=53.39  Aligned_cols=48  Identities=10%  Similarity=-0.083  Sum_probs=45.1

Q ss_pred             cccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcc
Q 041564           47 PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGG   94 (151)
Q Consensus        47 VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~   94 (151)
                      +||-++++.++ =+++.+.|++|.|+++|.++++++.++|++||+.++.
T Consensus        25 ~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~   73 (457)
T d1xm9a1          25 YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             HHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            89999999888 8999999999999999999999999999999998864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00036  Score=50.24  Aligned_cols=79  Identities=10%  Similarity=0.097  Sum_probs=66.3

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      +.+++..+-|.+-++...+..|++.|  |.++  |             +|+.++.+.++ .+.+.++|++|.|+.+|.++
T Consensus       119 ~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~  198 (264)
T d1xqra1         119 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE  198 (264)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCC
Confidence            35578888888889988888888887  4322  1             88888888777 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      |+.+.+.|+.+|..+..
T Consensus       199 ~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         199 HSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             CSTHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999987653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00063  Score=49.39  Aligned_cols=76  Identities=17%  Similarity=0.230  Sum_probs=61.9

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccCh-HH-HHHHHhcCChHHHHhhhccC
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGF-EA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~-Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      ..|...+.|..-++...+..+++.|  |..+  +             +++.++++. ++ +..++++|++|.|+++|..+
T Consensus       290 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~  369 (434)
T d1q1sc_         290 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK  369 (434)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSS
T ss_pred             HHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCC
Confidence            4567778888888888888888887  5422  2             889888654 44 89999999999999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 041564           78 DEQVADTMLLCKAEA   92 (151)
Q Consensus        78 D~KVVEAcLRcLr~~   92 (151)
                      |++++..++.++...
T Consensus       370 d~~~~~~~l~~l~~l  384 (434)
T d1q1sc_         370 DTKIIQVILDAISNI  384 (434)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.0021  Score=48.75  Aligned_cols=77  Identities=12%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             hHHhhhhhhhcccchhH-hHHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564           18 RLNNRLKNQIIGSQTKK-LSFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR   77 (151)
Q Consensus        18 rAlr~IKNqIIGNntKK-lsfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~   77 (151)
                      .|+..+++..-..+... ..+|+.|  |.++  |              +|+.++.|.++ .+.+.+.|++|.|+.+|.++
T Consensus        95 ~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~  174 (503)
T d1wa5b_          95 SATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG  174 (503)
T ss_dssp             HHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCC
Confidence            55555655443333332 3567777  6533  2              88889999998 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcc
Q 041564           78 DEQVADTMLLCKAEAGG   94 (151)
Q Consensus        78 D~KVVEAcLRcLr~~~~   94 (151)
                      ++.+.+.|+.||.-.+.
T Consensus       175 ~~~i~~~a~~~L~nia~  191 (503)
T d1wa5b_         175 SVEVKEQAIWALGNVAG  191 (503)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHHHHHhh
Confidence            99999999999987654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0026  Score=45.57  Aligned_cols=78  Identities=13%  Similarity=-0.003  Sum_probs=66.0

Q ss_pred             chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhcc
Q 041564           16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSR   76 (151)
Q Consensus        16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~   76 (151)
                      +..|..-|-|..-.|...+..+.+.|  |.++  |              +|++++.+.+. .+.+.++|++|.|+.+|.+
T Consensus        76 r~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~  155 (264)
T d1xqra1          76 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ  155 (264)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhc
Confidence            45678888888888888888888877  5533  2              88999988888 8899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 041564           77 RDEQVADTMLLCKAEAG   93 (151)
Q Consensus        77 ~D~KVVEAcLRcLr~~~   93 (151)
                      +|+++.+.++.+|..+.
T Consensus       156 ~~~~~~~~a~~~L~~l~  172 (264)
T d1xqra1         156 QVQKLKVKSAFLLQNLL  172 (264)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHH
Confidence            99999999999998764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0058  Score=46.18  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=64.7

Q ss_pred             hhHHhhhhhhhcccchhHhHHHHhh--hhhh---------------hcccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564           17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI---------------LPPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD   78 (151)
Q Consensus        17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI---------------LVLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D   78 (151)
                      ..|++.+.|-.-|+..+...++..|  |.+.               .+++.+++|.++ .+.+++.|++|.++..|.+.+
T Consensus       306 ~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~  385 (503)
T d1wa5b_         306 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE  385 (503)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCC
Confidence            4668888898888888877777777  4311               188999999988 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 041564           79 EQVADTMLLCKAEAG   93 (151)
Q Consensus        79 ~KVVEAcLRcLr~~~   93 (151)
                      .++...|..++.-+.
T Consensus       386 ~~v~~~a~~~l~nl~  400 (503)
T d1wa5b_         386 YKTKKEACWAISNAS  400 (503)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999987654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0054  Score=46.50  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=58.0

Q ss_pred             HHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCCHH
Q 041564           19 LNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQ   80 (151)
Q Consensus        19 Alr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~K   80 (151)
                      |...++|.- .+..-+..+++.|  |.++  |             +|+.++++.+. -+.+.+.|++|.|+.+|.++++.
T Consensus        80 a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~  158 (529)
T d1jdha_          80 TAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK  158 (529)
T ss_dssp             HHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHH
T ss_pred             HHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChH
Confidence            555666643 3444456778887  6533  2             78888888888 66777999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 041564           81 VADTMLLCKAEAGG   94 (151)
Q Consensus        81 VVEAcLRcLr~~~~   94 (151)
                      +.+.++.||...+.
T Consensus       159 ~~~~a~~~L~~l~~  172 (529)
T d1jdha_         159 FLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0092  Score=45.20  Aligned_cols=50  Identities=12%  Similarity=0.059  Sum_probs=43.6

Q ss_pred             cccccccChHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcccc
Q 041564           47 PPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMH   96 (151)
Q Consensus        47 VLGSFAcG~EaVkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~h   96 (151)
                      +|..++...+..+.++++|++|.|+.+|.++|+++.+.|+++|.....-+
T Consensus        83 ~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~  132 (529)
T d1jdha_          83 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ  132 (529)
T ss_dssp             HHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc
Confidence            78888776666899999999999999999999999999999998765443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.39  E-value=0.095  Score=36.81  Aligned_cols=48  Identities=15%  Similarity=0.158  Sum_probs=36.6

Q ss_pred             hhcccccccChHH--HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564           45 ILPPSRFTCGFEA--IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAG   93 (151)
Q Consensus        45 ILVLGSFAcG~Ea--VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~   93 (151)
                      ++++|+++.|...  ++..+ ..++|.|+..|.++++.|-++|+.||...+
T Consensus       386 l~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         386 VMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            4589999865432  44333 467899999999999999999999995543