Citrus Sinensis ID: 041618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MKSMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADESSTDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMSP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHcccccccccc
Coil and Loop (DISEMBL)
MKSMLSRLRNAVRKVKVLLNLSLHRWRIASSmigasgskrrlsfndrpglractddnyadesstdsasagprshggeslhrtisypseddiDKRAEMFIANFHRQLQIERQISLELRYCransfeymsp
Flexible Loop (DISEMBL)
mksmlsrlRNAVRKVKVLLNLSLHRWRIAssmigasgskrrlsfndrpglractddnyadesstdsasagprshggeslhrtisypSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMSP
Low Complexity Region (SEG)
MKSMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADESSTDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMSP
Disordered region (IsUnstruct)
*********NAVRKVKVLLNLSLHRWRIASSMI*************************************************************AEMFIANFHRQLQIERQISLELRYCRANSF*****
Disordered Region (DISOPRED)
*******LRNAVRKVKVLLNLSLHRWRIASSM************NDRPGLRACT***************************************RAEMFIANFHRQLQIERQISLELRYCRANS******
Disordered Region (DISEMBL)
MKSMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDN**********************HRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMSP
Disordered Region (DISPRO)
**SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGAS**********************************************ISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADESSTDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
225446076	128	PREDICTED: uncharacterized protein LOC10	0.868	0.875	0.601	7e-33
356562451	134	PREDICTED: uncharacterized protein LOC10	0.930	0.895	0.578	3e-31
359485093	128	PREDICTED: uncharacterized protein LOC10	0.852	0.859	0.595	8e-31
224143756	125	predicted protein [Populus trichocarpa]	0.906	0.936	0.612	1e-29
356547332	132	PREDICTED: uncharacterized protein LOC10	0.860	0.840	0.595	1e-28
449457151	120	PREDICTED: uncharacterized protein LOC10	0.891	0.958	0.532	2e-27
255646825	132	unknown [Glycine max]	0.844	0.825	0.569	5e-27
357479721	132	hypothetical protein MTR_4g128470 [Medic	0.922	0.901	0.545	1e-26
388514623	132	unknown [Medicago truncatula]	0.922	0.901	0.545	1e-26
116830679	131	unknown [Arabidopsis thaliana]	0.906	0.893	0.503	2e-22

>gi|225446076|ref|XP_002272519.1| PREDICTED: uncharacterized protein LOC100264996 [Vitis vinifera]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 88/123 (71%), Gaps = 11/123 (8%)

Query: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADES 62
           S+LSRLR AV+KV  LLN  +HRW +AS M+  S   RR SFNDRPGLR CT+D      
Sbjct: 11  SLLSRLRRAVKKVGFLLNFGIHRWHVAS-MLRTSSETRRFSFNDRPGLRGCTED------ 63

Query: 63  STDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRAN 122
            TDS      S G   + RTIS P E+D+DKRAE+FIANF+RQLQ+ERQ+SLELRYC+ N
Sbjct: 64  -TDSEDQPGSSRG---IQRTISGPCEEDVDKRAEVFIANFYRQLQMERQVSLELRYCKGN 119

Query: 123 SFE 125
           SFE
Sbjct: 120 SFE 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562451|ref|XP_003549485.1| PREDICTED: uncharacterized protein LOC100798434 [Glycine max]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 92/128 (71%), Gaps = 8/128 (6%)

Query: 4   MLSRLRNAVRKVKVLLNLSL--HRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADE 61
           +LSRLR AV+K+K+LL+ ++  H W  A+ + G S SKR++SFNDRPGL  CT       
Sbjct: 13  LLSRLRVAVKKMKLLLSATVLSHAWHAATILRGVSMSKRQISFNDRPGLMMCT------A 66

Query: 62  SSTDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRA 121
           SS ++ S G  S    SL RTIS PS+DDIDKRAEMFI+NF RQL +ERQISL+LRYC  
Sbjct: 67  SSDETDSEGLVSPAHHSLQRTISCPSDDDIDKRAEMFISNFRRQLNMERQISLQLRYCSQ 126

Query: 122 NSFEYMSP 129
           NSFE +SP
Sbjct: 127 NSFELVSP 134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485093|ref|XP_003633214.1| PREDICTED: uncharacterized protein LOC100259802 [Vitis vinifera]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 85/121 (70%), Gaps = 11/121 (9%)

Query: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADES 62
           S+LSRLR AV+KV  LLN  +HRW +AS M+  S   RR SFNDRPGLR CT+D      
Sbjct: 11  SLLSRLRRAVKKVGFLLNFGIHRWHVAS-MLRTSSDTRRFSFNDRPGLRGCTED------ 63

Query: 63  STDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRAN 122
            TDS      S G   + RTIS P E+D+DKRAE FIANF+RQLQ+ERQ+SLELRYC+ N
Sbjct: 64  -TDSEDQPGSSRG---IQRTISGPCEEDVDKRAEDFIANFYRQLQMERQVSLELRYCKGN 119

Query: 123 S 123
           S
Sbjct: 120 S 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143756|ref|XP_002325063.1| predicted protein [Populus trichocarpa] gi|222866497|gb|EEF03628.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 93/129 (72%), Gaps = 12/129 (9%)

Query: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKR-RLSFNDRPGLRACTDDNYADE 61
           S+LSRL  A++KVK++LNL + RWR+AS MIGA+ S+R +LSFNDRPGLR          
Sbjct: 7   SLLSRLTRAIKKVKIILNLDMSRWRLAS-MIGAASSRRHQLSFNDRPGLRGWE------- 58

Query: 62  SSTDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRA 121
              D  S  P S  G  LHRTISY SEDDIDKRAEMFI NF RQLQIERQISLEL+Y + 
Sbjct: 59  DIDDEESEDPGSSKG--LHRTISYQSEDDIDKRAEMFIENFRRQLQIERQISLELKYFQG 116

Query: 122 -NSFEYMSP 129
            NSF+ +SP
Sbjct: 117 LNSFKSISP 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547332|ref|XP_003542068.1| PREDICTED: uncharacterized protein LOC100814899 [Glycine max]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 87/121 (71%), Gaps = 10/121 (8%)

Query: 11  AVRKVKVLLNLSL--HRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYADESSTDSAS 68
           AV+KVK+LLN ++  H W  A+ + G S SKR++SFNDRPGL  CT    +DE  TDS  
Sbjct: 20  AVQKVKLLLNATVLSHAWHAATILRGVSLSKRQISFNDRPGLMMCT---ASDE--TDSED 74

Query: 69  AGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMS 128
               +H   SL RTIS PS+DDIDKRAEMFI NF RQL++ERQISL+LRYCR NS E +S
Sbjct: 75  LVSPAH---SLQRTISCPSDDDIDKRAEMFINNFRRQLKMERQISLQLRYCRENSLELVS 131

Query: 129 P 129
           P
Sbjct: 132 P 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457151|ref|XP_004146312.1| PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus] gi|449510648|ref|XP_004163722.1| PREDICTED: uncharacterized protein LOC101224640 [Cucumis sativus]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 92/124 (74%), Gaps = 9/124 (7%)

Query: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKR-RLSFNDRPGLRACTDDNYADE 61
           S+L RLR AV+K++ ++N S+ RWR+A+ M+G + S+  RLSF +RPGL+AC++D   +E
Sbjct: 5   SLLGRLRKAVKKIRFMMNFSIQRWRLAA-MLGRTSSRNLRLSFTERPGLKACSEDIIMEE 63

Query: 62  SSTDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRA 121
             + S+S+         L RT SY SEDD+D RAE FIANF+RQL+IERQ+SLEL+YCR 
Sbjct: 64  EQSVSSSS-------RGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRG 116

Query: 122 NSFE 125
           NSF+
Sbjct: 117 NSFD 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646825|gb|ACU23884.1| unknown [Glycine max]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 86/123 (69%), Gaps = 14/123 (11%)

Query: 11  AVRKVKVLLNLSL--HRWRIASSMIGASGSKRRLSFNDRPGL--RACTDDNYADESSTDS 66
           AV+KVK+LLN ++  H W  A+ + G S SKR++SFNDRPGL  R  +D+       TDS
Sbjct: 20  AVQKVKLLLNATVLSHAWHAATILCGVSLSKRQISFNDRPGLMMRTASDE-------TDS 72

Query: 67  ASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEY 126
                 +H   SL RTIS PS+DDIDKRAEMFI NF RQL++ERQISL+LRYCR NS E 
Sbjct: 73  EDLVFPAH---SLQRTISCPSDDDIDKRAEMFINNFRRQLKMERQISLQLRYCRENSLEL 129

Query: 127 MSP 129
           +SP
Sbjct: 130 VSP 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479721|ref|XP_003610146.1| hypothetical protein MTR_4g128470 [Medicago truncatula] gi|355511201|gb|AES92343.1| hypothetical protein MTR_4g128470 [Medicago truncatula]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 91/132 (68%), Gaps = 13/132 (9%)

Query: 2   KSMLSRLRNAVRKVKVLLNLSL--HRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYA 59
           KS+LSRLR AV+KVK+L++ ++  H W  A  + GAS S R+LSFNDRPGL  C+ +   
Sbjct: 10  KSLLSRLRTAVQKVKLLISSTILNHTWNAAKMLRGASLSNRQLSFNDRPGLMMCSSE--- 66

Query: 60  DESSTDSASAGPRSHGGESLHRTISYPS-EDDIDKRAEMFIANFHRQLQIERQISLELRY 118
           +  S  S S  P       L RTIS+PS EDDIDKR+E+FIANF RQL +ERQISL+LRY
Sbjct: 67  ETDSEGSVSPSP------CLQRTISFPSDEDDIDKRSEIFIANFRRQLLLERQISLQLRY 120

Query: 119 CR-ANSFEYMSP 129
           C+  NS   +SP
Sbjct: 121 CKEQNSSGLISP 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514623|gb|AFK45373.1| unknown [Medicago truncatula]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 91/132 (68%), Gaps = 13/132 (9%)

Query: 2   KSMLSRLRNAVRKVKVLLNLSL--HRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYA 59
           KS+LSRLR AV+KVK+L++ ++  H W  A  + GAS S R+LSFNDRPGL  C+ +   
Sbjct: 10  KSLLSRLRTAVQKVKLLISSTILNHTWNAAKMLRGASLSNRQLSFNDRPGLMMCSSE--- 66

Query: 60  DESSTDSASAGPRSHGGESLHRTISYPS-EDDIDKRAEMFIANFHRQLQIERQISLELRY 118
           +  S  S S  P       L RTIS+PS EDDIDKR+E+FIANF RQL +ERQISL+LRY
Sbjct: 67  EPDSEGSVSPSP------CLQRTISFPSDEDDIDKRSEIFIANFRRQLLLERQISLQLRY 120

Query: 119 CR-ANSFEYMSP 129
           C+  NS   +SP
Sbjct: 121 CKEQNSSGLISP 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830679|gb|ABK28297.1| unknown [Arabidopsis thaliana]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/133 (50%), Positives = 88/133 (66%), Gaps = 16/133 (12%)

Query: 3   SMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKR--RLSFNDRPGLRACTDDNYAD 60
           S+L+RLR AV KVK +L+  ++       M+G+S S    RLSFNDRPGL A   +N  D
Sbjct: 8   SLLNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAAFTENEPD 67

Query: 61  ESSTDSASAGPRSHGGESLHRTISY--PSEDDIDKRAEMFIANFHRQLQIERQISLELRY 118
            + +        S G  +L+RT+SY   S++DID +AEMFIANF+RQL+IERQISLEL+Y
Sbjct: 68  STGS--------SRG--ALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKY 117

Query: 119 CRAN--SFEYMSP 129
           C+ N  SF Y SP
Sbjct: 118 CQGNNQSFNYRSP 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2174537	130	AT5G57510 "AT5G57510" [Arabido	0.899	0.892	0.529	5.9e-25
TAIR|locus:2159128	188	AT5G13880 "AT5G13880" [Arabido	0.217	0.148	0.571	0.00038

TAIR|locus:2174537 AT5G57510 "AT5G57510" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 71/134 (52%), Positives = 91/134 (67%)

Query:     3 SMLSRLRNAVRKVKVLLNLSLHR-WRIASSMIGASGSKR--RLSFNDRPGLRACTDDNYA 59
             S+L+RLR AV KVK +L+  ++  W +   M+G+S S    RLSFNDRPGL A   +N  
Sbjct:     8 SLLNRLRQAVNKVKFVLSFKINSLWGLVP-MLGSSSSSSSLRLSFNDRPGLTAAFTENEP 66

Query:    60 DESSTDSASAGPRSHGGESLHRTISYP--SEDDIDKRAEMFIANFHRQLQIERQISLELR 117
             D  ST S      S G  +L+RT+SY   S++DID +AEMFIANF+RQL+IERQISLEL+
Sbjct:    67 D--STGS------SRG--ALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELK 116

Query:   118 YCRAN--SFEYMSP 129
             YC+ N  SF Y SP
Sbjct:   117 YCQGNNQSFNYRSP 130

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2159128 AT5G13880 "AT5G13880" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00038, P = 0.00038
 Identities = 16/28 (57%), Positives = 24/28 (85%)

Query:    88 EDDIDKRAEMFIANFHRQLQIERQISLE 115
             ED+IDK A++FI  FHRQ+ +++Q+SLE
Sbjct:   151 EDEIDKVADLFITRFHRQMWLQKQLSLE 178


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      129       129   0.00091  102 3  11 22  0.38    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.08u 0.12s 13.20t   Elapsed:  00:00:00
  Total cpu time:  13.08u 0.12s 13.20t   Elapsed:  00:00:00
  Start:  Fri May 10 22:07:09 2013   End:  Fri May 10 22:07:09 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XVIII000815 hypothetical protein (125 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
pfam05553	38	pfam05553, DUF761, Cotton fibre expressed protein	1e-07

>gnl|CDD|218633 pfam05553, DUF761, Cotton fibre expressed protein

 Score = 44.5 bits (106), Expect = 1e-07
 Identities = 16/29 (55%), Positives = 24/29 (82%)

Query: 87  SEDDIDKRAEMFIANFHRQLQIERQISLE 115
           S+D++D+RAE FIA F  QL+++RQ SL+
Sbjct: 1   SDDEVDRRAEEFIARFREQLRLQRQESLK 29

This family consists of several plant proteins of unknown function. Three of the sequences (from Gossypium hirsutum) in this family are described as cotton fibre expressed proteins. The remaining sequences, found in Arabidopsis thaliana, are uncharacterized. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
PF05553	38	DUF761: Cotton fibre expressed protein; InterPro:	99.59

>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function

Probab=99.59  E-value=1.7e-15  Score=94.62  Aligned_cols=34  Identities=53%  Similarity=0.870  Sum_probs=32.0

Q ss_pred             CchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041618           87 SEDDIDKRAEMFIANFHRQLQIERQISLELRYCRA  121 (129)
Q Consensus        87 ~dd~ID~rAE~FI~kF~~QmrLQRq~Sl~lRY~~~  121 (129)
                      ++++||++||+||++||+||||||++|++ ||+++
T Consensus         1 ~~~evd~rAe~FI~~f~~qlrlqr~~S~~-ry~em   34 (38)
T PF05553_consen    1 SDDEVDRRAEEFIAKFREQLRLQRQESLQ-RYQEM   34 (38)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            47899999999999999999999999996 99986

Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00