Citrus Sinensis ID: 041822
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 500 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M2C8 | 498 | Pentatricopeptide repeat- | yes | no | 0.906 | 0.909 | 0.606 | 1e-155 | |
| Q9FZ19 | 491 | Putative pentatricopeptid | no | no | 0.82 | 0.835 | 0.329 | 4e-54 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.876 | 0.858 | 0.265 | 6e-41 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.824 | 0.687 | 0.257 | 4e-39 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.824 | 0.688 | 0.257 | 4e-39 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.922 | 0.891 | 0.233 | 1e-38 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.824 | 0.687 | 0.252 | 1e-38 | |
| Q9LN22 | 537 | Pentatricopeptide repeat- | no | no | 0.902 | 0.839 | 0.254 | 2e-38 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.692 | 0.466 | 0.280 | 1e-36 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.798 | 0.762 | 0.255 | 1e-34 |
| >sp|Q9M2C8|PP291_ARATH Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 278/458 (60%), Positives = 357/458 (77%), Gaps = 5/458 (1%)
Query: 41 NDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFT 100
N HPFP+ P+ P L +H+P ++ LS V VLGRLFAAHSNGLKALEFFK++L+ +
Sbjct: 42 NGHPFPNHPIQPILAKHIPLSS-LSPEFVSEVLGRLFAAHSNGLKALEFFKYSLKSSKSS 100
Query: 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160
PT D+FEKTLHILARMRYFDQAW LM+ V++ +P+LL+ KSMSI+L +I+KF SYEETLE
Sbjct: 101 PTSDSFEKTLHILARMRYFDQAWALMAEVRKDYPNLLSFKSMSILLCKIAKFGSYEETLE 160
Query: 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220
AF +ME+EIF +KFG +EFN+LL+AFCT++EMKEARS+F KL SRF P+ KTMNILLL
Sbjct: 161 AFVKMEKEIFR--KKFGVDEFNILLRAFCTEREMKEARSIFEKLHSRFNPDVKTMNILLL 218
Query: 221 GFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP 280
GFKE+GDVTA E+FYHEMV RGF+P+ VTY IRIDG+CKK FG+A+RLFE+M+R+
Sbjct: 219 GFKEAGDVTATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDI 278
Query: 281 SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM 340
++Q +TTLIHG+G+ RN +ARQLFDE+ KR L PD GAYNA++SSL++C D++ A+++M
Sbjct: 279 TVQILTTLIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVM 338
Query: 341 DEMEEKRIGHDNVTYHTMFFGLMKSS--GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFC 398
EMEEK I D+VT+H+MF G+MKS G GVC+ Y +M E VPKT T+VMLMK FC
Sbjct: 339 KEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFC 398
Query: 399 VNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA 458
N V+LGL+LW Y++++G+CPHGHAL+LL T LC+R R +AFECS Q + R R VSE
Sbjct: 399 HNGEVNLGLDLWKYMLEKGYCPHGHALELLTTALCARRRANDAFECSWQTVERGRCVSEP 458
Query: 459 SYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQ 496
YRML+ L N +KLE+L I+ L + LPPP Q
Sbjct: 459 VYRMLETSLSSNNELKKLEELKEEIQKLHSFLPPPEIQ 496
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 233/416 (56%), Gaps = 6/416 (1%)
Query: 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAW 123
LS L++ VL R+ +H N ++ LEF+++ F + + + L+IL R R FDQ W
Sbjct: 69 LSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIW 128
Query: 124 ELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183
EL+ +R SL++ ++M ++L R++K S +T+E+F + +R + F + FN
Sbjct: 129 ELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLV---PDFFDTACFNA 185
Query: 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF 243
LL+ C +K M +AR+V+ L +F P+ +T NILL G+K S E F+ EM +G
Sbjct: 186 LLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSS---EEAEAFFEEMKGKGL 242
Query: 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQ 303
+P VVTYN ID YCK A +L ++M P + T TT+I G GL+ +AR+
Sbjct: 243 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKARE 302
Query: 304 LFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363
+ EM + PD+ AYNA I + R L A +L+DEM +K + + TY+ F L
Sbjct: 303 VLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLS 362
Query: 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGH 423
++ L +LY RM+ + +P T++ + L+K F + +VD+ + LW ++ +GF +
Sbjct: 363 LANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGSYSL 422
Query: 424 ALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479
D+L+ LC + EEA +C +M+ + + S S++ ++ + AN ++++ +L
Sbjct: 423 VSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVNNL 478
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 121/456 (26%), Positives = 215/456 (47%), Gaps = 18/456 (3%)
Query: 25 STTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGL 84
S S + ERI +I+ F D + TLL + LS L+E VL +L A G+
Sbjct: 58 SANDASQDAERICKILT--KFTDSKVE-TLLNE--ASVKLSPALIEEVLKKLSNA---GV 109
Query: 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144
AL FK+ F T + + L +++ F W L+ ++ LL+ ++ ++
Sbjct: 110 LALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMK--AKKLLSKETFAL 167
Query: 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204
+ R ++ + +E + AF +ME F K S +FN +L + + +A+ VF K+
Sbjct: 168 ISRRYARARKVKEAIGAFHKMEEFGF----KMESSDFNRMLDTLSKSRNVGDAQKVFDKM 223
Query: 205 LS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
RF P+ K+ ILL G+ + ++ ++ EM GF P VV Y I I+ +CK +
Sbjct: 224 KKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKY 283
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
+A+R F EME+ C PS +LI+G G + ++ A + F+ + YNA+
Sbjct: 284 EEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNAL 343
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
+ + + + A + +DEM K +G + TY + L++ + ++Y M
Sbjct: 344 VGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SC 400
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
P T ++++ FC R+D+ + +W + +G P H L+T LC + +EA E
Sbjct: 401 EPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 460
Query: 444 CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479
+ML + + L++ L+ +K+ DL
Sbjct: 461 YFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDL 496
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 203/424 (47%), Gaps = 12/424 (2%)
Query: 26 TTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLK 85
++T E+ER+ ++I++ D+ + L + LS L+ VL R A
Sbjct: 124 SSTNPEEVERVCKVIDELFALDRNMEAVLDE---MKLDLSHDLIVEVLERFRHARK---P 177
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A FF + + F + + ILA+ R F+ ++ + LLT+++ +I
Sbjct: 178 AFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEM--GTKGLLTMETFTIA 235
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
+ + + ++ + F+ M++ F K G E N LL + K KEA+ +F KL
Sbjct: 236 MKAFAAAKERKKAVGIFELMKKYKF----KIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF PN T +LL G+ ++ +++M+ G +P +V +N+ ++G + D
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 351
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A++LF M+ P++++ T +I ++ A + FD+M L+PD Y +I+
Sbjct: 352 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 411
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
+ L+ EL+ EM+EK D TY+ + + E ++Y++MI+ + P
Sbjct: 412 GFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEP 471
Query: 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECS 445
T M+MK + V ++G +W +I +G CP ++ +L+ GL S G+ EA
Sbjct: 472 SIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYL 531
Query: 446 KQML 449
++ML
Sbjct: 532 EEML 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 203/424 (47%), Gaps = 12/424 (2%)
Query: 26 TTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLK 85
++T E+ER+ ++I++ D+ + L + LS L+ VL R A
Sbjct: 123 SSTNPEEVERVCKVIDELFALDRNMEAVLDE---MKLDLSHDLIVEVLERFRHARK---P 176
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A FF + + F + + ILA+ R F+ ++ + LLT+++ +I
Sbjct: 177 AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEM--GTKGLLTMETFTIA 234
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
+ + + ++ + F+ M++ F K G E N LL + K KEA+ +F KL
Sbjct: 235 MKAFAAAKERKKAVGIFELMKKYKF----KIGVETINCLLDSLGRAKLGKEAQVLFDKLK 290
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF PN T +LL G+ ++ +++M+ G +P +V +N+ ++G + D
Sbjct: 291 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 350
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A++LF M+ P++++ T +I ++ A + FD+M L+PD Y +I+
Sbjct: 351 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 410
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
+ L+ EL+ EM+EK D TY+ + + E ++Y++MI+ + P
Sbjct: 411 GFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEP 470
Query: 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECS 445
T M+MK + V ++G +W +I +G CP ++ +L+ GL S G+ EA
Sbjct: 471 SIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYL 530
Query: 446 KQML 449
++ML
Sbjct: 531 EEML 534
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/476 (23%), Positives = 229/476 (48%), Gaps = 15/476 (3%)
Query: 7 LKRSDKFPGISDRLALLFSTTTQSSEIERITRIIND--HPFPDQPLHPTLLQHLPQTTPL 64
+ R +F S A L+S++ Q ++ + + I+ P L L Q +
Sbjct: 42 INRQSRFCCKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQ---SGLRV 98
Query: 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWE 124
S +VE+VL R A GL FF+++ + H+ + A+ + A++R + W+
Sbjct: 99 SQEVVEDVLNRFRNA---GLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWD 155
Query: 125 LMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184
L++ +++ +L +++ I++ + ++ Q +E + AF+ ME+ FN L
Sbjct: 156 LINAMRK--KKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPP----NLVAFNGL 209
Query: 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR 244
L A C K +++A+ VF + RF P++KT +ILL G+ + ++ + EM+ G
Sbjct: 210 LSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCH 269
Query: 245 PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQL 304
P +VTY+I +D CK G +A+ + M+ C P+ + L+H G + +A
Sbjct: 270 PDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDT 329
Query: 305 FDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK 364
F EM + +K D+ +N++I + + + ++ EM+ K + ++ + + + L++
Sbjct: 330 FLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIE 389
Query: 365 SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA 424
+ ++ +MI+ P T M++K FC ++ +W Y+ +G P H
Sbjct: 390 RGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHT 448
Query: 425 LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLD 480
+L+ GLC ++A ++M+ + S ++ L++ L++ + L+ L+
Sbjct: 449 FSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLN 504
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 203/424 (47%), Gaps = 12/424 (2%)
Query: 26 TTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLK 85
++T E+ER+ ++I++ D+ + L + LS L+ VL R A
Sbjct: 124 SSTNPEEVERVCKVIDELFALDRNMEAVLDE---MKLDLSHDLIVEVLERFRHARK---P 177
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A FF + + F + + ILA+ R F+ ++ + LLT+++ +I
Sbjct: 178 AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEM--GTKGLLTMETFTIA 235
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
+ + + ++ + F+ M++ F K G E N LL + K KEA+ +F KL
Sbjct: 236 MKAFAAAKERKKAVGIFELMKKYKF----KIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF PN T +LL G+ ++ +++M+ +G +P +V +N+ ++G + D
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSD 351
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A++LF M+ P++++ T +I ++ A + FD+M L+PD Y +I+
Sbjct: 352 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 411
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
+ L+ EL+ EM+EK D TY+ + + E ++Y++MI+ + P
Sbjct: 412 GFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEP 471
Query: 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECS 445
T M+MK + + ++G +W +I +G CP ++ +L+ GL G+ EA
Sbjct: 472 SIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYL 531
Query: 446 KQML 449
++ML
Sbjct: 532 EEML 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/480 (25%), Positives = 233/480 (48%), Gaps = 29/480 (6%)
Query: 26 TTTQSSEIERITRIINDH--PFPDQP----LHPTLLQHL-------PQTTPLSSTLVENV 72
T + +E+ II DH P P L+P+L H +T+ +S ++V V
Sbjct: 58 TPEDTQTVEKFHSIIKDHYRKNPTSPNDAILNPSLTLHALSLDFSQIETSQVSPSVVRCV 117
Query: 73 LGRLFAAHSNGL---KALEFFKFTLQ---HPHFTPTPDAFEKTLHILARMRYFDQAWELM 126
+ + + +G+ ++L FF + + H +P P + + + + ++R FD AW L+
Sbjct: 118 IEKCGSVR-HGIPLHQSLAFFNWATSRDDYDHKSPHP--YNEMIDLSGKVRQFDLAWHLI 174
Query: 127 SHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186
+ ++ +++++ +I++ R + E + F+RME V + F++++
Sbjct: 175 D-LMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKI----AFSIVIS 229
Query: 187 AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS 246
++ EA+S F L RF P+ L+ G+ +G+++ E + EM L G P+
Sbjct: 230 NLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPN 289
Query: 247 VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306
V TY+I ID C+ G A +F +M C P+ T L+ + Q+++
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYN 349
Query: 307 EMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS 366
+M K +PD YN +I + R +L A+++++ M +K+ + T++T+F + K
Sbjct: 350 QMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409
Query: 367 GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD 426
+ G ++Y +M+E K P T T +LM+ F + D+ L + + D+ P+ +
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYR 469
Query: 427 LLVTGLCSRGRWEEAFECSKQMLVRRRQVSEAS-YRMLQRYLVQANANEKLEDL-DRMIK 484
LLVT C G W A++ K+M+ + S Y M+ L +A +K E+L ++MI+
Sbjct: 470 LLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQ 529
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 170/356 (47%), Gaps = 10/356 (2%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT--HPSLLTLKSMSIMLSRISKFQSYE 156
+TP ++ ++ R D+ W+L+ ++R P+ S+ +L RI K E
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336
Query: 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTM 215
E AF M R+ GI + + L+ FC + +++ A F ++ SR P+ T
Sbjct: 337 E---AFSEMIRQ---GILP-DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 389
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
++ GF + GD+ +HEM +G P VT+ I+GYCK G DA R+ M +
Sbjct: 390 TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 449
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
C P++ T TTLI G ++ A +L EM K L+P+I YN++++ L + ++
Sbjct: 450 AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE 509
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
A++L+ E E + D VTY T+ KS ++ ++ M+ P T +LM
Sbjct: 510 AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMN 569
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451
FC++ ++ G L +++ +G P+ + LV C R + A K M R
Sbjct: 570 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 187/411 (45%), Gaps = 12/411 (2%)
Query: 33 IERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKF 92
+ I+R+++DH P L TL+ + P+ +SS LVE VL R + G A FF +
Sbjct: 38 VNEISRVLSDHRNPKDDLEHTLVAYSPR---VSSNLVEQVLKR---CKNLGFPAHRFFLW 91
Query: 93 TLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152
+ P F + +++ + IL + F W+ + + + ++ K I+ S+
Sbjct: 92 ARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRA 151
Query: 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPN 211
E AF+RM + GI+ ++ + LL + C +K + A+ F K P+
Sbjct: 152 NLPSEACRAFNRM---VEFGIKP-CVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPS 207
Query: 212 NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271
KT +IL+ G+ D + + EM+ R ++ YN +D CK G ++F+
Sbjct: 208 AKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQ 267
Query: 272 EMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR 331
EM + P + IH ++H A ++ D M + +L P++ +N +I +L +
Sbjct: 268 EMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNE 327
Query: 332 DLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVV 391
++ A L+DEM +K D TY+++ + KL RM K +P T
Sbjct: 328 KVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYN 387
Query: 392 MLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC-SRGRWEEA 441
M++K R D +W + +R F P +++ GL +G+ EEA
Sbjct: 388 MVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEA 438
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 500 | ||||||
| 147789025 | 515 | hypothetical protein VITISV_012424 [Viti | 0.978 | 0.949 | 0.677 | 0.0 | |
| 225460540 | 513 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.953 | 0.677 | 0.0 | |
| 224139118 | 512 | predicted protein [Populus trichocarpa] | 0.944 | 0.921 | 0.688 | 0.0 | |
| 255580386 | 530 | pentatricopeptide repeat-containing prot | 0.942 | 0.888 | 0.682 | 0.0 | |
| 449451922 | 504 | PREDICTED: pentatricopeptide repeat-cont | 0.936 | 0.928 | 0.653 | 0.0 | |
| 356573388 | 491 | PREDICTED: pentatricopeptide repeat-cont | 0.94 | 0.957 | 0.650 | 0.0 | |
| 124360979 | 511 | Tetratricopeptide-like helical [Medicago | 0.93 | 0.909 | 0.616 | 1e-172 | |
| 357501695 | 821 | Pentatricopeptide repeat-containing prot | 0.93 | 0.566 | 0.616 | 1e-171 | |
| 297820986 | 498 | pentatricopeptide repeat-containing prot | 0.93 | 0.933 | 0.608 | 1e-160 | |
| 15233088 | 498 | pentatricopeptide repeat-containing prot | 0.906 | 0.909 | 0.606 | 1e-154 |
| >gi|147789025|emb|CAN75780.1| hypothetical protein VITISV_012424 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/502 (67%), Positives = 411/502 (81%), Gaps = 13/502 (2%)
Query: 2 LLAKRLKRSDKFPGISDRLALL----FSTTTQS-------SEIERITRIINDHPFPDQPL 50
+L R KRS++ I +L L F ++ QS SEI+R+TRIINDHPFPD PL
Sbjct: 1 MLLLRTKRSNQPYQIPQKLTLFLNIAFKSSGQSHPSLEIKSEIDRVTRIINDHPFPDHPL 60
Query: 51 HPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTL 110
H TL+QH+P+ LS+T VENVLGRLFAAHSNG KA EFFKF+LQH F P+ DAFEKTL
Sbjct: 61 HSTLIQHVPKHL-LSNTFVENVLGRLFAAHSNGFKAFEFFKFSLQHSEFCPSSDAFEKTL 119
Query: 111 HILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIF 170
HIL RMRYFD+AWELM +Q+THPSLLTLKSMSIMLSRI+KFQSYE+TLEAF RME+ +F
Sbjct: 120 HILTRMRYFDKAWELMEEIQQTHPSLLTLKSMSIMLSRIAKFQSYEDTLEAFGRMEKNVF 179
Query: 171 VGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230
G R+FG+ EFNVLL+AFCTQ++MKEARSVF K+ SRF+PN KTMNILLLGFKESGDVTA
Sbjct: 180 FG-REFGANEFNVLLRAFCTQRQMKEARSVFHKMHSRFSPNTKTMNILLLGFKESGDVTA 238
Query: 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290
+E+FYHEM+ RGF+P+ VTYNIRID YCKKGCFGD +RL EEME+ C P+L+TITTLIH
Sbjct: 239 VELFYHEMIRRGFKPNSVTYNIRIDAYCKKGCFGDGLRLLEEMEKANCPPTLETITTLIH 298
Query: 291 GAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH 350
GAG+ +NI +AR+LF+E+ RNL+PDIG YNA +SSLIR R++ +A+ LMDEMEE+ IGH
Sbjct: 299 GAGVAQNISRARELFNEISIRNLQPDIGVYNAFMSSLIRSREVQSALMLMDEMEEEGIGH 358
Query: 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLW 410
D++TYHTMF GLM+S+G+EGV +LY +MI FVPKTRT+VMLMK+FC N ++DL L+LW
Sbjct: 359 DSMTYHTMFRGLMRSNGIEGVSELYHKMIRRNFVPKTRTIVMLMKWFCQNQQLDLSLDLW 418
Query: 411 GYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQA 470
GYLIDRG+CPHGHALDLLVTGLCS G+ +EA EC+KQ L R R +SE +RML+RYLV+A
Sbjct: 419 GYLIDRGYCPHGHALDLLVTGLCSHGKVKEAVECAKQTLERGRPMSEGVFRMLERYLVEA 478
Query: 471 NANEKLEDLDRMIKNLQAVLPP 492
E L LD+MIK L VLPP
Sbjct: 479 GEGEMLWKLDQMIKKLHTVLPP 500
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460540|ref|XP_002272860.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360 [Vitis vinifera] gi|296081020|emb|CBI18524.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/502 (67%), Positives = 411/502 (81%), Gaps = 13/502 (2%)
Query: 2 LLAKRLKRSDKFPGISDRLALL----FSTTTQS-------SEIERITRIINDHPFPDQPL 50
+L R KRS++ I +L L F ++ QS SEI+R+TRIINDHPFPD PL
Sbjct: 1 MLLLRTKRSNQPYQIPQKLTLFLNIAFKSSGQSHPSLEIKSEIDRVTRIINDHPFPDHPL 60
Query: 51 HPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTL 110
H TL+QH+P+ LS+T VENVLGRLFAAHSNG KA EFFKF+LQH F P+ DAFEKTL
Sbjct: 61 HSTLIQHVPKHL-LSNTFVENVLGRLFAAHSNGFKAFEFFKFSLQHSEFCPSSDAFEKTL 119
Query: 111 HILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIF 170
HIL RMRYFD+AWELM +Q+THPSLLTLKSMSIMLSRI+KFQSYE+TLEAF RME+ +F
Sbjct: 120 HILTRMRYFDKAWELMEEIQQTHPSLLTLKSMSIMLSRIAKFQSYEDTLEAFGRMEKNVF 179
Query: 171 VGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230
G R+FG+ EFNVLL+AFCTQ++MKEARSVF K+ SRF+PN KTMNILLLGFKESGDVTA
Sbjct: 180 FG-REFGANEFNVLLRAFCTQRQMKEARSVFHKMHSRFSPNTKTMNILLLGFKESGDVTA 238
Query: 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290
+E+FYHEM+ RGF+P+ VTYNIRID YCKKGCFGD +RL EEME+ C P+L+TITTLIH
Sbjct: 239 VELFYHEMIRRGFKPNSVTYNIRIDAYCKKGCFGDGLRLLEEMEKANCPPTLETITTLIH 298
Query: 291 GAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH 350
GAG+ +NI +AR+LF+E+ RNL+PDIG YNA +SSLIR R++ +A+ LMDEMEE+ IGH
Sbjct: 299 GAGVAQNISRARELFNEISIRNLQPDIGVYNAFMSSLIRSREVQSALMLMDEMEEEGIGH 358
Query: 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLW 410
D++TYHTMF GLM+S+G+EGV +LY +MI FVPKTRT+VMLMK+FC N ++DL L+LW
Sbjct: 359 DSMTYHTMFRGLMRSNGIEGVSELYHKMIRRNFVPKTRTIVMLMKWFCQNQQLDLSLDLW 418
Query: 411 GYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQA 470
GYLIDRG+CPHGHALDLLVTGLCS G+ +EA EC+KQ L R R +SE +RML+RYLV+A
Sbjct: 419 GYLIDRGYCPHGHALDLLVTGLCSHGKVKEAVECAKQTLERGRPMSEGVFRMLERYLVEA 478
Query: 471 NANEKLEDLDRMIKNLQAVLPP 492
E L LD+MIK L VLPP
Sbjct: 479 GEGEMLWKLDQMIKKLHTVLPP 500
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139118|ref|XP_002326772.1| predicted protein [Populus trichocarpa] gi|222834094|gb|EEE72571.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/475 (68%), Positives = 405/475 (85%), Gaps = 3/475 (0%)
Query: 25 STTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGL 84
+T+TQS E+ERI RIINDHPFP+QPLHPTL H+P T L++ VENVLGRLFAAHSNGL
Sbjct: 32 ATSTQSIEVERIARIINDHPFPNQPLHPTLTHHIPPTL-LTTAFVENVLGRLFAAHSNGL 90
Query: 85 KALEFFKFTLQH-PHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143
KALEFFK++L + HF+P+PD+FEKTLHILARMRYFD+AW+LM + +THP LLTLKSMS
Sbjct: 91 KALEFFKYSLNNQTHFSPSPDSFEKTLHILARMRYFDKAWDLMVEIGKTHPFLLTLKSMS 150
Query: 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203
IML +I+KF+SYEETL+AF++ME+ +FVG RKFG EEFNVLL+AFCT +++KEA+SVFVK
Sbjct: 151 IMLCKIAKFRSYEETLDAFEKMEKRVFVG-RKFGVEEFNVLLRAFCTVRKLKEAKSVFVK 209
Query: 204 LLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
+ RF PN KTMNILLLGFKES DVTAME+FYHEMV RGF+PS +Y IRID YCKKG F
Sbjct: 210 MHERFPPNVKTMNILLLGFKESRDVTAMELFYHEMVKRGFKPSSSSYGIRIDAYCKKGYF 269
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
DA+R+FEEMER CLP+L+T+TTLIHGAG+ RN +AR+LFDE+PKRNL+ D GAYNA+
Sbjct: 270 ADALRIFEEMERANCLPTLETVTTLIHGAGVARNAMKARELFDEIPKRNLQADTGAYNAL 329
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
ISSL++CR++ +A++LMDEME+ I +D++TYHTMF GLMKS +EGVC+LY +MI+ F
Sbjct: 330 ISSLVKCREVKSAIQLMDEMEKNNIHYDDMTYHTMFLGLMKSGSIEGVCELYHKMIDRNF 389
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
VPKTRTVVMLMKFFCVN ++DLGLNLWGYL+ +G+CPH HALDLLVTGLCSRGR EAF+
Sbjct: 390 VPKTRTVVMLMKFFCVNSQIDLGLNLWGYLVGKGYCPHHHALDLLVTGLCSRGRSHEAFK 449
Query: 444 CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQV 498
CSKQ L R VSEA Y ML+R+L+Q+N +KL +L++MI+ LQ+VLPP + +
Sbjct: 450 CSKQSLERGIHVSEAVYGMLERFLLQSNMTDKLGELNQMIEKLQSVLPPSSGNYI 504
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580386|ref|XP_002531020.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223529395|gb|EEF31358.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/473 (68%), Positives = 394/473 (83%), Gaps = 2/473 (0%)
Query: 27 TTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKA 86
T SE+ERIT+IIND+ FP++ L+PTLL+HL LS+ VENVLGRLFAAHSNGLKA
Sbjct: 54 THSISEVERITKIINDNSFPNESLYPTLLKHL-NPAALSTDFVENVLGRLFAAHSNGLKA 112
Query: 87 LEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146
LEFF+F+L+H HF P+ AFE TLHILARMRYF++AWELM + ++HPSLLTLKSM IML
Sbjct: 113 LEFFRFSLRHSHFNPSSFAFEMTLHILARMRYFEKAWELMMEIGKSHPSLLTLKSMGIML 172
Query: 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206
S+I+KFQSYE+TLEAF RME+ +FVG + FG+EEFNVLLQAFC+Q+E+KEARSVF K+
Sbjct: 173 SKIAKFQSYEDTLEAFKRMEKTVFVG-KTFGTEEFNVLLQAFCSQREVKEARSVFQKMHD 231
Query: 207 RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDA 266
+F PN KTMNILLLGFK++ D+TAME+FYHE+V RGF+ + +TYNIRID YCKKG FGD
Sbjct: 232 QFNPNTKTMNILLLGFKKARDITAMELFYHEIVRRGFKATSLTYNIRIDAYCKKGYFGDG 291
Query: 267 MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISS 326
+R+FEEME+ C P+L+TITTLIHGAG+ RNIH+AR LFDE+ KRNLKPD GAYNA+ISS
Sbjct: 292 LRIFEEMEKDNCPPTLETITTLIHGAGVARNIHKARHLFDEIGKRNLKPDTGAYNALISS 351
Query: 327 LIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK 386
L++C+D+ +AM LMDEMEEK IG D+VTYHT+FFGLMK + EGVC LY RMI FVPK
Sbjct: 352 LVKCKDIESAMRLMDEMEEKHIGRDSVTYHTIFFGLMKLNDTEGVCDLYHRMISRDFVPK 411
Query: 387 TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSK 446
TRTVVMLMKFFCVN R+DLGL W Y++D+G+CPHGHALDLLVTGLCSRGR EA+ECSK
Sbjct: 412 TRTVVMLMKFFCVNSRLDLGLAFWQYMLDKGYCPHGHALDLLVTGLCSRGRLLEAYECSK 471
Query: 447 QMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQVA 499
Q + R ++SE YRML+R L Q++ +KL +LD+MIK LQ+VLPP +A
Sbjct: 472 QFVERGMRMSEVVYRMLERSLQQSDFTDKLRELDQMIKKLQSVLPPSKGHALA 524
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451922|ref|XP_004143709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Cucumis sativus] gi|449520004|ref|XP_004167024.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/470 (65%), Positives = 386/470 (82%), Gaps = 2/470 (0%)
Query: 23 LFSTTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSN 82
L ++ ++EIERI +IINDHPFPDQPLHPTLL +P P S+T + +VLG+LFAAHSN
Sbjct: 31 LHPSSKSTTEIERIAKIINDHPFPDQPLHPTLLHLIPSPLP-SNTFLNDVLGQLFAAHSN 89
Query: 83 GLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM 142
GLKALEFFKF L H PT DAFEKTLHIL+RMRYFDQ+WELM +++THP LLTLKSM
Sbjct: 90 GLKALEFFKFCLHHSQAPPTSDAFEKTLHILSRMRYFDQSWELMREIRQTHPFLLTLKSM 149
Query: 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFV 202
SI+LSRI+KF S+EET+EAF RME E+FVG RKFG+EEFNVLL+AFCTQ++MKEARSVF
Sbjct: 150 SILLSRIAKFLSFEETIEAFQRMENEVFVG-RKFGTEEFNVLLRAFCTQRQMKEARSVFH 208
Query: 203 KLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262
K+ SRF PN KT+N+LLLGFKES D+T++E+FYHEM+ RGF+P+ VTY+IRID YCKKGC
Sbjct: 209 KMYSRFPPNIKTINLLLLGFKESSDITSVELFYHEMIKRGFKPNAVTYSIRIDAYCKKGC 268
Query: 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNA 322
F D +R+F+EMER C P+L+TITTLIHGAG+V++ +ARQLFDE+P RNL PDIGAYNA
Sbjct: 269 FVDGLRVFKEMERAKCEPTLETITTLIHGAGIVKDKTKARQLFDEIPLRNLCPDIGAYNA 328
Query: 323 MISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382
+ISSLIR D+ +A +M++ME K I HD+VTYH MF GL++ + G +LY +M+
Sbjct: 329 LISSLIRSGDVKSAASVMEDMEAKHIEHDSVTYHMMFSGLIRLEDVGGFYELYIKMVGRN 388
Query: 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442
FVPKTRT VM+MKFFC N RVDLGL W YL+++G+CPH H LDLLVTGLC+RG +AF
Sbjct: 389 FVPKTRTAVMIMKFFCENRRVDLGLGFWAYLVEKGYCPHSHVLDLLVTGLCARGMVLQAF 448
Query: 443 ECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPP 492
ECSKQML R RQ+SEA++ +++R L++A+A +K E+L+R+ K L+ VLPP
Sbjct: 449 ECSKQMLERGRQMSEAAFLIMERCLLKAHATDKYEELERLRKKLKTVLPP 498
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573388|ref|XP_003554843.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/472 (65%), Positives = 386/472 (81%), Gaps = 2/472 (0%)
Query: 21 ALLFSTTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAH 80
+LL + + +++ +TR INDHPFP QPL PTLL LP +T S++LVEN+LGRLFA+H
Sbjct: 7 SLLTTCSMDGLDVDTLTRTINDHPFPLQPLQPTLLHLLPPST-FSTSLVENILGRLFASH 65
Query: 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK 140
SNGLKALEFF ++L H HF +P + TLHIL RMRYFD+AW L+ + RTHPSLLTLK
Sbjct: 66 SNGLKALEFFNYSLVHSHFPLSPASLNMTLHILTRMRYFDKAWVLLRDIARTHPSLLTLK 125
Query: 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSV 200
SMSI+LS+I+KFQS+E+TL+ F RME E+FVG R+FG++EFNVLL+AFCTQ++MKEARSV
Sbjct: 126 SMSIVLSKIAKFQSFEDTLDGFRRMEDEVFVG-REFGTDEFNVLLKAFCTQRQMKEARSV 184
Query: 201 FVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260
F KL+ RF+PN K+MNILLLGFKESG+VT++E+FYHEMV RGF P VT+NIRID YCKK
Sbjct: 185 FAKLVPRFSPNTKSMNILLLGFKESGNVTSVELFYHEMVRRGFSPDGVTFNIRIDAYCKK 244
Query: 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320
GCFGDA+RL EEMER +P+++TITTLIHGAGLVRN +A QLF E+P RN+ D GAY
Sbjct: 245 GCFGDALRLLEEMERRNVVPTIETITTLIHGAGLVRNKDKAWQLFKEIPSRNMVADAGAY 304
Query: 321 NAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380
NA+I++L+R RD+ +A LMDEM EK I D+VTYHTMF G M+S G+EGV KLY +M +
Sbjct: 305 NALITALVRTRDIESASSLMDEMVEKCIELDSVTYHTMFLGFMRSRGIEGVSKLYQKMTQ 364
Query: 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440
FVPKTRTVVMLMK+FC N+R+DL + LW YL+++G+CPH HALDLLVTGLC+RG +
Sbjct: 365 SNFVPKTRTVVMLMKYFCQNYRLDLSVCLWKYLVEKGYCPHAHALDLLVTGLCARGLVHD 424
Query: 441 AFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPP 492
AFECSKQML R R +S AS+ ML+R+L+QA+ +KL++LD+MIK LQ VLPP
Sbjct: 425 AFECSKQMLERGRHMSNASFLMLERFLLQASDMDKLKELDQMIKKLQTVLPP 476
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124360979|gb|ABN08951.1| Tetratricopeptide-like helical [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 289/469 (61%), Positives = 373/469 (79%), Gaps = 4/469 (0%)
Query: 27 TTQSSE---IERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNG 83
TTQS I+ IT IIN+HPFP +PLHPTLL + P TTP+ S+L++N+L RLFA+HSNG
Sbjct: 29 TTQSKNLPNIDTITTIINNHPFPQKPLHPTLLHYFPPTTPIPSSLIQNILIRLFASHSNG 88
Query: 84 LKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143
LKALEFF FT+++ H P + E TLHIL RMRYFD+AW L+ + T+P LLTLK+M+
Sbjct: 89 LKALEFFNFTIKNTHTNPCASSLEITLHILTRMRYFDKAWSLLIQIANTYPGLLTLKAMN 148
Query: 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203
IML++I+K++S+EETL+ F RME E+FVG R+FGS+EFNVLL+ F TQ++MKEARSVFV+
Sbjct: 149 IMLAKIAKYKSFEETLDGFRRMEEEVFVG-REFGSDEFNVLLKVFATQRQMKEARSVFVR 207
Query: 204 LLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
+ RF + K+MNILLLGFKE+GDVT++E+FYHEMV RGF+P V++ IRID YCKKG F
Sbjct: 208 FVDRFKADTKSMNILLLGFKETGDVTSVELFYHEMVKRGFKPDSVSFGIRIDAYCKKGRF 267
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
GDA+RL EEME + S++TITTLIHGAGLV+N +A QLF+E+P RNL D G YNA+
Sbjct: 268 GDALRLLEEMESRKFVVSVETITTLIHGAGLVQNPGKAWQLFNEIPLRNLVVDSGVYNAL 327
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I++L+R RD+ +A+ LMD M EK+I D VTYHT+F GLMKS G+EGV +LY +M + KF
Sbjct: 328 ITTLVRNRDVVSALSLMDGMIEKQILPDGVTYHTIFLGLMKSRGIEGVSELYQKMTKRKF 387
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
VPKTRTVV+LMK+FC N R+DL L+LW YL+++G CPH HALDLLVTGLCSRG +EAF
Sbjct: 388 VPKTRTVVVLMKYFCHNSRLDLSLSLWNYLVEKGHCPHAHALDLLVTGLCSRGLVQEAFS 447
Query: 444 CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPP 492
CSKQ L R R +S ++ ML+R L Q+ +KL++LD+MIK L++VLPP
Sbjct: 448 CSKQTLERGRYISSTAFLMLERLLKQSRDVDKLKELDQMIKKLRSVLPP 496
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501695|ref|XP_003621136.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496151|gb|AES77354.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/469 (61%), Positives = 373/469 (79%), Gaps = 4/469 (0%)
Query: 27 TTQSSE---IERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNG 83
TTQS I+ IT IIN+HPFP +PLHPTLL + P TTP+ S+L++N+L RLFA+HSNG
Sbjct: 29 TTQSKNLPNIDTITTIINNHPFPQKPLHPTLLHYFPPTTPIPSSLIQNILIRLFASHSNG 88
Query: 84 LKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143
LKALEFF FT+++ H P + E TLHIL RMRYFD+AW L+ + T+P LLTLK+M+
Sbjct: 89 LKALEFFNFTIKNTHTNPCASSLEITLHILTRMRYFDKAWSLLIQIANTYPGLLTLKAMN 148
Query: 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203
IML++I+K++S+EETL+ F RME E+FVG R+FGS+EFNVLL+ F TQ++MKEARSVFV+
Sbjct: 149 IMLAKIAKYKSFEETLDGFRRMEEEVFVG-REFGSDEFNVLLKVFATQRQMKEARSVFVR 207
Query: 204 LLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
+ RF + K+MNILLLGFKE+GDVT++E+FYHEMV RGF+P V++ IRID YCKKG F
Sbjct: 208 FVDRFKADTKSMNILLLGFKETGDVTSVELFYHEMVKRGFKPDSVSFGIRIDAYCKKGRF 267
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
GDA+RL EEME + S++TITTLIHGAGLV+N +A QLF+E+P RNL D G YNA+
Sbjct: 268 GDALRLLEEMESRKFVVSVETITTLIHGAGLVQNPGKAWQLFNEIPLRNLVVDSGVYNAL 327
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I++L+R RD+ +A+ LMD M EK+I D VTYHT+F GLMKS G+EGV +LY +M + KF
Sbjct: 328 ITTLVRNRDVVSALSLMDGMIEKQILPDGVTYHTIFLGLMKSRGIEGVSELYQKMTKRKF 387
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
VPKTRTVV+LMK+FC N R+DL L+LW YL+++G CPH HALDLLVTGLCSRG +EAF
Sbjct: 388 VPKTRTVVVLMKYFCHNSRLDLSLSLWNYLVEKGHCPHAHALDLLVTGLCSRGLVQEAFS 447
Query: 444 CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPP 492
CSKQ L R R +S ++ ML+R L Q+ +KL++LD+MIK L++VLPP
Sbjct: 448 CSKQTLERGRYISSTAFLMLERLLKQSRDVDKLKELDQMIKKLRSVLPP 496
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820986|ref|XP_002878376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324214|gb|EFH54635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 286/470 (60%), Positives = 368/470 (78%), Gaps = 5/470 (1%)
Query: 31 SEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFF 90
+EIE ITRIINDHPFP+ P+ P +H+P ++ LS V VLG LFAAHSNGLKALEFF
Sbjct: 32 TEIELITRIINDHPFPNHPIQPIFTKHIPLSS-LSPEFVSEVLGSLFAAHSNGLKALEFF 90
Query: 91 KFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150
K++L+ + +PT D+FEKTLHILARMRYFDQAW LM+ +++ +P LL+ KSMSI+L +I+
Sbjct: 91 KYSLKSSNSSPTSDSFEKTLHILARMRYFDQAWALMAEIRKDYPDLLSFKSMSIILCKIA 150
Query: 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAP 210
KF SYEETLEAF +ME+EIF +KFG +EFN+LL+AFCT++EMKEARS+F KL SRF P
Sbjct: 151 KFGSYEETLEAFVKMEKEIFR--KKFGVDEFNILLRAFCTEREMKEARSIFEKLHSRFKP 208
Query: 211 NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLF 270
+ KTMNILLLGFKE+GD+TA E+FYHEMV RGF+P+ VTY IRIDG+CKK FG+A+RLF
Sbjct: 209 DVKTMNILLLGFKEAGDITATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLF 268
Query: 271 EEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRC 330
E+M+R ++Q +TTLIHG+G+VRN +ARQLFDE+PKR L PD GAYNA++SSL++C
Sbjct: 269 EDMDRQDIYITVQILTTLIHGSGVVRNKIKARQLFDEIPKRGLTPDCGAYNALMSSLMKC 328
Query: 331 RDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS--GLEGVCKLYDRMIEGKFVPKTR 388
D++ A+++M EMEEK I D+VT+H+MF G+MKS G GVC+ Y +M E VPKT
Sbjct: 329 GDVSDAIKVMKEMEEKEIEPDSVTFHSMFIGMMKSKEFGFSGVCEYYQKMKERSLVPKTP 388
Query: 389 TVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448
TVVMLMK FC N V+LGL+LW Y++++G+CPHGHAL+LL T LC+R R +AFECS+Q
Sbjct: 389 TVVMLMKLFCQNGEVNLGLDLWKYMLEKGYCPHGHALELLTTALCARRRANDAFECSRQT 448
Query: 449 LVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQV 498
+ R R VSE YRML+ L N +KLE+L I+ L + LPPP Q +
Sbjct: 449 VERGRCVSEPVYRMLETSLSSNNELKKLEELKGKIQKLHSFLPPPGTQLI 498
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233088|ref|NP_191695.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75264589|sp|Q9M2C8.1|PP291_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g61360 gi|6850903|emb|CAB71066.1| putative protein [Arabidopsis thaliana] gi|25054868|gb|AAN71923.1| unknown protein [Arabidopsis thaliana] gi|332646669|gb|AEE80190.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 278/458 (60%), Positives = 357/458 (77%), Gaps = 5/458 (1%)
Query: 41 NDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFT 100
N HPFP+ P+ P L +H+P ++ LS V VLGRLFAAHSNGLKALEFFK++L+ +
Sbjct: 42 NGHPFPNHPIQPILAKHIPLSS-LSPEFVSEVLGRLFAAHSNGLKALEFFKYSLKSSKSS 100
Query: 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160
PT D+FEKTLHILARMRYFDQAW LM+ V++ +P+LL+ KSMSI+L +I+KF SYEETLE
Sbjct: 101 PTSDSFEKTLHILARMRYFDQAWALMAEVRKDYPNLLSFKSMSILLCKIAKFGSYEETLE 160
Query: 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220
AF +ME+EIF +KFG +EFN+LL+AFCT++EMKEARS+F KL SRF P+ KTMNILLL
Sbjct: 161 AFVKMEKEIFR--KKFGVDEFNILLRAFCTEREMKEARSIFEKLHSRFNPDVKTMNILLL 218
Query: 221 GFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP 280
GFKE+GDVTA E+FYHEMV RGF+P+ VTY IRIDG+CKK FG+A+RLFE+M+R+
Sbjct: 219 GFKEAGDVTATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDI 278
Query: 281 SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM 340
++Q +TTLIHG+G+ RN +ARQLFDE+ KR L PD GAYNA++SSL++C D++ A+++M
Sbjct: 279 TVQILTTLIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVM 338
Query: 341 DEMEEKRIGHDNVTYHTMFFGLMKSS--GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFC 398
EMEEK I D+VT+H+MF G+MKS G GVC+ Y +M E VPKT T+VMLMK FC
Sbjct: 339 KEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFC 398
Query: 399 VNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA 458
N V+LGL+LW Y++++G+CPHGHAL+LL T LC+R R +AFECS Q + R R VSE
Sbjct: 399 HNGEVNLGLDLWKYMLEKGYCPHGHALELLTTALCARRRANDAFECSWQTVERGRCVSEP 458
Query: 459 SYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQ 496
YRML+ L N +KLE+L I+ L + LPPP Q
Sbjct: 459 VYRMLETSLSSNNELKKLEELKEEIQKLHSFLPPPEIQ 496
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 500 | ||||||
| TAIR|locus:2098941 | 498 | AT3G61360 [Arabidopsis thalian | 0.942 | 0.945 | 0.594 | 7.3e-146 | |
| TAIR|locus:2204913 | 491 | AT1G02420 "AT1G02420" [Arabido | 0.842 | 0.857 | 0.320 | 6.6e-58 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.876 | 0.858 | 0.256 | 1.8e-39 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.888 | 0.741 | 0.253 | 4.4e-38 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.888 | 0.742 | 0.253 | 5.7e-38 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.888 | 0.741 | 0.248 | 1.3e-37 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.798 | 0.743 | 0.262 | 1e-36 | |
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.81 | 0.720 | 0.270 | 2.7e-36 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.796 | 0.624 | 0.246 | 3e-32 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.646 | 0.442 | 0.282 | 3.7e-30 |
| TAIR|locus:2098941 AT3G61360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1425 (506.7 bits), Expect = 7.3e-146, P = 7.3e-146
Identities = 283/476 (59%), Positives = 359/476 (75%)
Query: 23 LFSTTTQSSEIERITRIINDHPFPDXXXXXXXXXXXXXXXXXSSTLVENVLGRLFAAHSN 82
L ST+ +EIERIT IIN HPFP+ S V VLGRLFAAHSN
Sbjct: 24 LSSTSINRTEIERITIIINGHPFPNHPIQPILAKHIPLSSL-SPEFVSEVLGRLFAAHSN 82
Query: 83 GLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM 142
GLKALEFFK++L+ +PT D+FEKTLHILARMRYFDQAW LM+ V++ +P+LL+ KSM
Sbjct: 83 GLKALEFFKYSLKSSKSSPTSDSFEKTLHILARMRYFDQAWALMAEVRKDYPNLLSFKSM 142
Query: 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFV 202
SI+L +I+KF SYEETLEAF +ME+EIF +KFG +EFN+LL+AFCT++EMKEARS+F
Sbjct: 143 SILLCKIAKFGSYEETLEAFVKMEKEIFR--KKFGVDEFNILLRAFCTEREMKEARSIFE 200
Query: 203 KLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262
KL SRF P+ KTMNILLLGFKE+GDVTA E+FYHEMV RGF+P+ VTY IRIDG+CKK
Sbjct: 201 KLHSRFNPDVKTMNILLLGFKEAGDVTATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRN 260
Query: 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNA 322
FG+A+RLFE+M+R+ ++Q +TTLIHG+G+ RN +ARQLFDE+ KR L PD GAYNA
Sbjct: 261 FGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNA 320
Query: 323 MISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS--GLEGVCKLYDRMIE 380
++SSL++C D++ A+++M EMEEK I D+VT+H+MF G+MKS G GVC+ Y +M E
Sbjct: 321 LMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKE 380
Query: 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440
VPKT T+VMLMK FC N V+LGL+LW Y++++G+CPHGHAL+LL T LC+R R +
Sbjct: 381 RSLVPKTPTIVMLMKLFCHNGEVNLGLDLWKYMLEKGYCPHGHALELLTTALCARRRAND 440
Query: 441 AFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQ 496
AFECS Q + R R VSE YRML+ L N +KLE+L I+ L + LPPP Q
Sbjct: 441 AFECSWQTVERGRCVSEPVYRMLETSLSSNNELKKLEELKEEIQKLHSFLPPPEIQ 496
|
|
| TAIR|locus:2204913 AT1G02420 "AT1G02420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 137/427 (32%), Positives = 237/427 (55%)
Query: 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWE 124
S L++ VL R+ +H N ++ LEF+++ F + + + L+IL R R FDQ WE
Sbjct: 70 SKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWE 129
Query: 125 LMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184
L+ +R SL++ ++M ++L R++K S +T+E+F + +R + F + FN L
Sbjct: 130 LLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLV---PDFFDTACFNAL 186
Query: 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR 244
L+ C +K M +AR+V+ L +F P+ +T NILL G+K S + E F+ EM +G +
Sbjct: 187 LRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEA---EAFFEEMKGKGLK 243
Query: 245 PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQL 304
P VVTYN ID YCK A +L ++M P + T TT+I G GL+ +AR++
Sbjct: 244 PDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREV 303
Query: 305 FDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK 364
EM + PD+ AYNA I + R L A +L+DEM +K + + TY+ F L
Sbjct: 304 LKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSL 363
Query: 365 SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA 424
++ L +LY RM+ + +P T++ + L+K F + +VD+ + LW ++ +GF +
Sbjct: 364 ANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGSYSLV 423
Query: 425 LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIK 484
D+L+ LC + EEA +C +M+ + + S S++ ++ + AN ++++ +L + +
Sbjct: 424 SDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVNNLIQKMA 483
Query: 485 NLQAVLP 491
+P
Sbjct: 484 IFSTEIP 490
|
|
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 117/456 (25%), Positives = 209/456 (45%)
Query: 25 STTTQSSEIERITRIINDHPFPDXXXXXXXXXXXXXXXXXSSTLVENVLGRLFAAHSNGL 84
S S + ERI +I+ F D S L+E VL +L A G+
Sbjct: 58 SANDASQDAERICKILTK--FTDSKVETLLNEASVKL---SPALIEEVLKKLSNA---GV 109
Query: 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144
AL FK+ F T + + L +++ F W L+ ++ LL+ ++ ++
Sbjct: 110 LALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAK--KLLSKETFAL 167
Query: 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204
+ R ++ + +E + AF +ME F K S +FN +L + + +A+ VF K+
Sbjct: 168 ISRRYARARKVKEAIGAFHKMEEFGF----KMESSDFNRMLDTLSKSRNVGDAQKVFDKM 223
Query: 205 LS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
RF P+ K+ ILL G+ + ++ ++ EM GF P VV Y I I+ +CK +
Sbjct: 224 KKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKY 283
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
+A+R F EME+ C PS +LI+G G + ++ A + F+ + YNA+
Sbjct: 284 EEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNAL 343
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
+ + + + A + +DEM K +G + TY + L++ + ++Y M
Sbjct: 344 VGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SC 400
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
P T ++++ FC R+D+ + +W + +G P H L+T LC + +EA E
Sbjct: 401 EPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 460
Query: 444 CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479
+ML + + L++ L+ +K+ DL
Sbjct: 461 YFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDL 496
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| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 4.4e-38, P = 4.4e-38
Identities = 117/462 (25%), Positives = 212/462 (45%)
Query: 26 TTTQSSEIERITRIINDHPFPDXXXXXXXXXXXXXXXXXSSTLVENVLGRLFAAHSNGLK 85
++T E+ER+ ++I D F S L+ VL R A
Sbjct: 124 SSTNPEEVERVCKVI-DELF--ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK---P 177
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A FF + + F + + ILA+ R F+ ++ + LLT+++ +I
Sbjct: 178 AFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTK--GLLTMETFTIA 235
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
+ + + ++ + F+ M++ F K G E N LL + K KEA+ +F KL
Sbjct: 236 MKAFAAAKERKKAVGIFELMKKYKF----KIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF PN T +LL G+ ++ +++M+ G +P +V +N+ ++G + D
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 351
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A++LF M+ P++++ T +I ++ A + FD+M L+PD Y +I+
Sbjct: 352 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 411
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGH--DNVTYHTMFFGLMKSSGL-EGVCKLYDRMIEGK 382
+ L+ EL+ EM+EK GH D TY+ + LM + + E ++Y++MI+ +
Sbjct: 412 GFGTQKKLDTVYELLKEMQEK--GHPPDGKTYNALI-KLMANQKMPEHGTRIYNKMIQNE 468
Query: 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442
P T M+MK + V ++G +W +I +G CP ++ +L+ GL S G+ EA
Sbjct: 469 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 528
Query: 443 ECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIK 484
++ML + + Y + E E+L + K
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570
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| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 5.7e-38, P = 5.7e-38
Identities = 117/462 (25%), Positives = 212/462 (45%)
Query: 26 TTTQSSEIERITRIINDHPFPDXXXXXXXXXXXXXXXXXSSTLVENVLGRLFAAHSNGLK 85
++T E+ER+ ++I D F S L+ VL R A
Sbjct: 123 SSTNPEEVERVCKVI-DELF--ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK---P 176
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A FF + + F + + ILA+ R F+ ++ + LLT+++ +I
Sbjct: 177 AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK--GLLTMETFTIA 234
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
+ + + ++ + F+ M++ F K G E N LL + K KEA+ +F KL
Sbjct: 235 MKAFAAAKERKKAVGIFELMKKYKF----KIGVETINCLLDSLGRAKLGKEAQVLFDKLK 290
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF PN T +LL G+ ++ +++M+ G +P +V +N+ ++G + D
Sbjct: 291 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 350
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A++LF M+ P++++ T +I ++ A + FD+M L+PD Y +I+
Sbjct: 351 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 410
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGH--DNVTYHTMFFGLMKSSGL-EGVCKLYDRMIEGK 382
+ L+ EL+ EM+EK GH D TY+ + LM + + E ++Y++MI+ +
Sbjct: 411 GFGTQKKLDTVYELLKEMQEK--GHPPDGKTYNALI-KLMANQKMPEHGTRIYNKMIQNE 467
Query: 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442
P T M+MK + V ++G +W +I +G CP ++ +L+ GL S G+ EA
Sbjct: 468 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 527
Query: 443 ECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIK 484
++ML + + Y + E E+L + K
Sbjct: 528 RYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 569
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| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 115/462 (24%), Positives = 212/462 (45%)
Query: 26 TTTQSSEIERITRIINDHPFPDXXXXXXXXXXXXXXXXXSSTLVENVLGRLFAAHSNGLK 85
++T E+ER+ ++I D F S L+ VL R A
Sbjct: 124 SSTNPEEVERVCKVI-DELF--ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK---P 177
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A FF + + F + + ILA+ R F+ ++ + LLT+++ +I
Sbjct: 178 AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK--GLLTMETFTIA 235
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
+ + + ++ + F+ M++ F K G E N LL + K KEA+ +F KL
Sbjct: 236 MKAFAAAKERKKAVGIFELMKKYKF----KIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF PN T +LL G+ ++ +++M+ +G +P +V +N+ ++G + D
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSD 351
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A++LF M+ P++++ T +I ++ A + FD+M L+PD Y +I+
Sbjct: 352 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 411
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGH--DNVTYHTMFFGLMKSSGL-EGVCKLYDRMIEGK 382
+ L+ EL+ EM+EK GH D TY+ + LM + + E ++Y++MI+ +
Sbjct: 412 GFGTQKKLDTVYELLKEMQEK--GHPPDGKTYNALI-KLMANQKMPEHATRIYNKMIQNE 468
Query: 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442
P T M+MK + + ++G +W +I +G CP ++ +L+ GL G+ EA
Sbjct: 469 IEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREAC 528
Query: 443 ECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIK 484
++ML + + Y + E E+L + K
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570
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| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 107/408 (26%), Positives = 201/408 (49%)
Query: 85 KALEFFKFTLQHPHFT-PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143
++L FF + + +P + + + + ++R FD AW L+ + ++ +++++ +
Sbjct: 132 QSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLID-LMKSRNVEISIETFT 190
Query: 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203
I++ R + E + F+RME V K F++++ ++ EA+S F
Sbjct: 191 ILIRRYVRAGLASEAVHCFNRMEDYGCVP-DKIA---FSIVISNLSRKRRASEAQSFFDS 246
Query: 204 LLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
L RF P+ L+ G+ +G+++ E + EM L G P+V TY+I ID C+ G
Sbjct: 247 LKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQI 306
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
A +F +M C P+ T L+ + Q++++M K +PD YN +
Sbjct: 307 SRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFL 366
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I + R +L A+++++ M +K+ + T++T+F + K + G ++Y +M+E K
Sbjct: 367 IEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKC 426
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
P T T +LM+ F + D+ L + + D+ P+ + LLVT C G W A++
Sbjct: 427 EPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYK 486
Query: 444 CSKQMLVRRRQVSEAS-YRMLQRYLVQANANEKLEDL-DRMI-KNLQA 488
K+M+ + S Y M+ L +A +K E+L ++MI K L A
Sbjct: 487 LFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVA 534
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| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 113/418 (27%), Positives = 202/418 (48%)
Query: 68 LVENVLGRLFAAHSNGL-KALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELM 126
+ E+++ ++ SNG +A FF + + + + + +L + R FD WEL+
Sbjct: 130 VTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELV 189
Query: 127 SHVQRTHPS-LLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185
+ + + S L+TL +MS ++ R++K Y + ++AF ME+ G+ K + N L+
Sbjct: 190 NEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSY--GV-KTDTIAMNSLM 246
Query: 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP 245
A + ++ A VF+KL P+ +T NIL+ GF ++ M + F P
Sbjct: 247 DALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTP 306
Query: 246 SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLF 305
VVTY ++ YCK+G F + EEM C P++ T T ++H G + + +A ++
Sbjct: 307 DVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVY 366
Query: 306 DEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKS 365
++M + PD Y+++I L + A E+ ++M + + D + Y+TM +
Sbjct: 367 EKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHH 426
Query: 366 SGLEGVCKLYDRMI--EGKFV-PKTRTVVMLMKFFCVNFRVDL-GLNLWGYLIDRGFCPH 421
S E +L RM EG+ P T L+K C ++ L G+ L +++
Sbjct: 427 SRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGI-LLHHMVKNDVSID 485
Query: 422 GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQAN-ANEKLE 477
LL+ GLC G+ EEA ++ VR+ V +++ +ML L + N A KL+
Sbjct: 486 VSTYILLIRGLCMSGKVEEACLFFEEA-VRKGMVPRDSTCKMLVDELEKKNMAEAKLK 542
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| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 3.0e-32, P = 3.0e-32
Identities = 102/414 (24%), Positives = 184/414 (44%)
Query: 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMS 127
L+E VL R A + G + FF + + P + + + ++ + IL++MR F W L+
Sbjct: 115 LIERVLNRCGDAGNLGYR---FFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIE 171
Query: 128 HVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEE----FNV 183
+++ +P L+ + +++ R + ++ +E D M KFG E F
Sbjct: 172 EMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMP--------KFGFEPDEYVFGC 223
Query: 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF 243
LL A C +K+A +F + RF N + LL G+ G + + +M GF
Sbjct: 224 LLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGF 283
Query: 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQ 303
P +V Y + GY G DA L +M R P+ T LI V + +A +
Sbjct: 284 EPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMK 343
Query: 304 LFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363
+F EM + + D+ Y A++S + ++ ++D+M +K + +TY +
Sbjct: 344 VFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHE 403
Query: 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGH 423
K E +L ++M + ++ P ++++ C V + LW + + G P
Sbjct: 404 KKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVD 463
Query: 424 ALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLE 477
+++ GL S+G EA + K+M V R S + Y L+ L ++KLE
Sbjct: 464 TFVIMINGLASQGCLLEASDHFKEM-VTRGLFSVSQYGTLKLLLNTVLKDKKLE 516
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| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 3.7e-30, P = 3.7e-30
Identities = 94/333 (28%), Positives = 169/333 (50%)
Query: 167 REIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA--PNNKTMNILLLGFKE 224
+++F I K FN L+ F T + +A++V +++ + P+ T N L+ G+ +
Sbjct: 342 KDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 401
Query: 225 SGDV-TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQ 283
G V A+E+ H+M +G +P+V +Y I +DG+CK G +A + EM P+
Sbjct: 402 EGLVGLALEVL-HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTV 460
Query: 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343
LI I +A ++F EMP++ KPD+ +N++IS L ++ A+ L+ +M
Sbjct: 461 GFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDM 520
Query: 344 EEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI-EGKFVPKTRTVVMLMKFFCVNFR 402
+ + + VTY+T+ ++ ++ KL + M+ +G + + T L+K C
Sbjct: 521 ISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEI-TYNSLIKGLCRAGE 579
Query: 403 VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRM 462
VD +L+ ++ G P + ++L+ GLC G EEA E K+M++R ++
Sbjct: 580 VDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 639
Query: 463 LQRYLVQANANEKLEDLDRMIKNLQAV-LPPPT 494
L L +A ++ED M + LQA +PP T
Sbjct: 640 LINGLCRAG---RIEDGLTMFRKLQAEGIPPDT 669
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M2C8 | PP291_ARATH | No assigned EC number | 0.6069 | 0.906 | 0.9096 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00038667001 | SubName- Full=Chromosome chr18 scaffold_96, whole genome shotgun sequence; (513 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 500 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 4e-14
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 245 PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG 291
P VVTYN IDGYCKKG +A++LF EM++ P++ T + LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 210 PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259
P+ T N L+ G+ + G V ++EM RG +P+V TY+I IDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 5e-11
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 241 RGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274
+G +P VVTYN IDG C+ G +A+ L +EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
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This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-10
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 315 PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK 364
PD+ YN +I + + A++L +EM+++ I + TY + GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 9e-09
Identities = 45/196 (22%), Positives = 92/196 (46%), Gaps = 6/196 (3%)
Query: 247 VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306
+ ++N+ + GY K G F +A+ L+ M P + T ++ G + ++ + R++
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 307 EMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS 366
+ + + D+ NA+I+ ++C D+ +A + D M + D ++++ M G ++
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENG 267
Query: 367 -GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHAL 425
LEG+ +L+ M E P T+ ++ + LG + GY++ GF
Sbjct: 268 ECLEGL-ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 426 DLLVTGLCSRGRWEEA 441
+ L+ S G W EA
Sbjct: 327 NSLIQMYLSLGSWGEA 342
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 78/391 (19%), Positives = 144/391 (36%), Gaps = 56/391 (14%)
Query: 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWE 124
SST N R +H +AL+ + ++Q DA+ + R ++
Sbjct: 49 SSTHDSNSQLRALCSHGQLEQALKLLE-SMQELRVPVDEDAYVALFRLCEWKRAVEEGSR 107
Query: 125 LMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRM-EREIFVGIRKFGSEEFNV 183
+ S +HPSL ++ + MLS +F F +M ER++F +NV
Sbjct: 108 VCSRALSSHPSL-GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF---------SWNV 157
Query: 184 LLQAFCTQKEMKEA-----------------------------------RSVFVKLLS-R 207
L+ + EA R V ++
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217
Query: 208 FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAM 267
F + +N L+ + + GDV + + + M R +++N I GY + G + +
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGL 273
Query: 268 RLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSL 327
LF M ++ P L TIT++I L+ + R++ + K D+ N++I
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333
Query: 328 IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKT 387
+ A ++ ME K D V++ M G K+ + + Y M + P
Sbjct: 334 LSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 388 RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418
T+ ++ +D+G+ L +G
Sbjct: 390 ITIASVLSACACLGDLDVGVKLHELAERKGL 420
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 69/351 (19%), Positives = 132/351 (37%), Gaps = 58/351 (16%)
Query: 140 KSMSIMLSRISK---FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKE 196
KS + S+I K + E LE F+ +E + ++ L++A K ++
Sbjct: 85 KSGVSLCSQIEKLVACGRHREALELFEILEAG---CPFTLPASTYDALVEACIALKSIRC 141
Query: 197 ARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRID 255
++V+ + S F P+ MN +LL + G + + EM R ++ ++ I
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIG 197
Query: 256 GYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH---GAGLVR---------------- 296
G G + +A LF EM +T ++ G G R
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 297 ----------------NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM 340
+I AR +FD MP++ A+N+M++ A+ L
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLY 313
Query: 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVN 400
EM + + D T+ M + + LE + + +I F L+ +
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373
Query: 401 FRVDLGLNLWGYLIDRGFCPHGHAL--DLLVTGLCSRGRWEEAFECSKQML 449
R++ N++ + P + + + L+ G + GR +A E ++M+
Sbjct: 374 GRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 5e-08
Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 3/208 (1%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
FN+L+ + +++ A V + + K L+ +SG V AM +HEMV
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
G +V T+ IDG + G A + M P LI G +
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 300 QARQLFDEMPKRN--LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
+A + EM + PD A++ + ++ A E+ + E I Y
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
+ + +YD M + P
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKP 647
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-06
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 248 VTYNIRIDGYCKKGCFGDAMRLFEEMER 275
VTYN I GYCK G +A+ LF+EM+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS 281
VTYN IDG CK G +A+ LF+EM+ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 79/334 (23%), Positives = 134/334 (40%), Gaps = 60/334 (17%)
Query: 55 LQHLPQTTPLSS-TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHIL 113
L L + L S +V N L +++ KALE F H P D T I+
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF-------HNIPEKDVISWT-SII 462
Query: 114 ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML-------SRISKFQSYEETLEAFDRME 166
A +R ++ +E + ++ LLTLK S+ L +RI +E R
Sbjct: 463 AGLRLNNRCFEALIFFRQM---LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-- 517
Query: 167 REIFVGIRKFGSEEF--NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNK---TMNILLLG 221
GI G + F N LL + M A ++F + K + NILL G
Sbjct: 518 ----TGI---GFDGFLPNALLDLYVRCGRMNYA-------WNQFNSHEKDVVSWNILLTG 563
Query: 222 FKESGD-VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME-RVACL 279
+ G A+E+F + MV G P VT+ + + G + F ME + +
Sbjct: 564 YVAHGKGSMAVELF-NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622
Query: 280 PSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR-----DLN 334
P+L+ ++ G + +A ++MP + PD + A++++ CR +L
Sbjct: 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA---CRIHRHVELG 676
Query: 335 A-AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367
A + + E++ +G Y+ + L +G
Sbjct: 677 ELAAQHIFELDPNSVG-----YYILLCNLYADAG 705
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344
+ LKPD+ YN +I L R ++ A+EL+DEME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 20/186 (10%)
Query: 245 PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQL 304
P +T + G A +++ + + + T ++ + A +
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636
Query: 305 FDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK 364
+D+M K+ +KPD ++A++ DL+ A E++ + ++ I V+Y
Sbjct: 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY--------- 687
Query: 365 SSGLEGVC----------KLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414
S L G C +LY+ + K P T+ L+ C ++ L + +
Sbjct: 688 -SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746
Query: 415 DRGFCP 420
G CP
Sbjct: 747 RLGLCP 752
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRI 348
YN++IS + L A+EL EM+EK +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRI 348
YN +I L + + A+EL EM+E+ I
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 61/276 (22%), Positives = 123/276 (44%), Gaps = 29/276 (10%)
Query: 181 FNVLLQAFCTQK-----------EMK-EARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228
FN L+ A C Q EMK E + P++ T+ L+ +G V
Sbjct: 545 FNALISA-CGQSGAVDRAFDVLAEMKAETHPI--------DPDHITVGALMKACANAGQV 595
Query: 229 T-AMEMF--YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTI 285
A E++ HE ++G P V Y I ++ +KG + A+ ++++M++ P
Sbjct: 596 DRAKEVYQMIHEYNIKGT-PEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 286 TTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345
+ L+ AG ++ +A ++ + K+ +K +Y++++ + ++ A+EL ++++
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 346 KRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDL 405
++ T + + L + + L ++ M P T T +L+ D+
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 406 GLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
GL+L + G P+ + TGLC R R+E+A
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCI-TGLCLR-RFEKA 806
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI 317
T TLI G + +A +LF EM +R ++PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 500 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.46 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.28 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.2 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.17 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.16 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.96 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.87 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.87 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.8 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.78 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.74 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.73 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.66 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.66 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.62 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.43 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.32 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.3 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.29 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.23 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.16 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.15 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.09 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.02 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.98 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.88 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.86 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.83 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.83 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.77 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.74 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.73 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.72 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.69 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.65 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.6 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.57 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.55 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.45 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.44 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.38 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.36 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.33 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.32 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.29 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.28 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.28 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.26 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.25 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.23 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.22 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.21 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.19 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.15 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.09 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.06 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.75 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.67 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.61 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.61 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.61 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.3 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.3 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.29 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.28 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.11 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.08 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.06 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.04 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.03 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.03 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.99 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.86 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.79 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.72 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.65 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.65 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.59 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.46 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.35 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.3 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.2 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.16 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.14 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.14 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.11 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.1 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.0 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.94 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.91 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.82 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.81 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.72 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.39 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.21 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.2 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.18 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.15 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.12 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.65 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.43 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.29 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.18 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.28 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.14 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.82 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.78 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.74 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.69 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.46 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.3 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.24 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.08 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.94 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.75 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.74 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.73 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.42 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.24 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.78 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.45 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.69 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.56 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.5 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.78 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.59 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.57 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.19 | |
| PF13934 | 226 | ELYS: Nuclear pore complex assembly | 86.94 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.77 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.68 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.6 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.2 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.97 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.52 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.44 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.42 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.37 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.21 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.02 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.73 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.66 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.56 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.52 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.46 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.39 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.26 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.92 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.78 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.52 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.96 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.38 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.03 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.84 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 81.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 80.31 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=499.42 Aligned_cols=423 Identities=15% Similarity=0.169 Sum_probs=394.1
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++...+..+...+++.|+.++|+++|++|.+.+-++++..+++.++..|.+.|.+++|..+|+.|.. ++..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 34455555666777889999999999999998755677888889999999999999999999998874 4677899
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGF 222 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~ 222 (500)
.++.+|++.|++++|.++|++|.+.+ ..||..+|+.+|.+|++.|++++|.++|++|.+ ++.||..+|+.||.+|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~G----l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAG----LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999987 688999999999999999999999999999996 8999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER--VACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999986 6789999999999999999999999
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041822 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460 (500)
Q Consensus 381 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 460 (500)
.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHhhccCCCCcccc
Q 041822 461 RMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQ 497 (500)
Q Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~hy 497 (500)
+.++.+|.+.|+.+.|.++++.|.+.+. .|+...|
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi--~pd~~ty 792 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGI--KPNLVMC 792 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 9999999999999999999999987653 4554433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-62 Score=496.83 Aligned_cols=414 Identities=14% Similarity=0.191 Sum_probs=326.8
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
|+...|+.++..|++.|+.+.|.++|+.|.+. |+.||..+|+.+|.+|++.|++++|.++|++|.+.+ ..++..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHH
Confidence 56677778888888888888888888887776 677888888888888888888888888888887754 3456677888
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPNNKTMNILLLG 221 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~l~~~ 221 (500)
++.+|++.|++++|.++|++|...+ ..||..+|+.+|.+|++.|++++|.++|++|.+ ++.||..+|+.++.+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~G----v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKN----VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 8888888888888888888887765 677888888888888888888888888888863 577888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 041822 222 FKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQA 301 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 301 (500)
|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 302 RQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888788888888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----C-------------------CCH
Q 041822 382 KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----R-------------------GRW 438 (500)
Q Consensus 382 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-------------------g~~ 438 (500)
|+.||..||+.++.+|++.|+++.|.+++++|.+.|+.||..+|++++..|.+ . +..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 88888888888888888888888888888888888888888888887755321 1 223
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 041822 439 EEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIK 484 (500)
Q Consensus 439 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 484 (500)
++|..+|++|.+.|+.||..||+.++.++...+..+.+..+++.|.
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 5678888888888888888888888776666666655555554443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=473.34 Aligned_cols=410 Identities=14% Similarity=0.167 Sum_probs=362.6
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
+...++.++..+.+.|++++|+++|++|....++.||..+|+.++.+|++.++++.+.+++..|.+.+ ..++..+++.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 34467788888899999999999999998776678899999999999999999999999999988865 34567788899
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCC--------------
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAP-------------- 210 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~-------------- 210 (500)
+..|++.|++++|.++|++|. .+|..+||+++.+|++.|++++|.++|++|.+ +..|
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~--------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP--------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC--------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 999999999999999999883 46888999999999999999999999999864 4544
Q ss_pred ---------------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041822 211 ---------------------NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRL 269 (500)
Q Consensus 211 ---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (500)
|..+|+.|+.+|++.|++++|.++|++|.+ +|..+||.+|.+|++.|++++|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 455567778888888888888888888853 5889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 041822 270 FEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG 349 (500)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 349 (500)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH-CCCCCCHhHHHHH
Q 041822 350 HDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID-RGFCPHGHALDLL 428 (500)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 428 (500)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 599999999999999999999999999999999999999999999999999999999999999986 6999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhccCCCCccccc
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQV 498 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~hyv 498 (500)
+++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+.+.+..+.+.+. +..|....+|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~ 532 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYV 532 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchH
Confidence 99999999999999999877 678999999999999988888888888877664 33455666665
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=472.90 Aligned_cols=419 Identities=16% Similarity=0.185 Sum_probs=285.7
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++...|+.++..+++.|++++|+++|+.|... |+.||..||+.++++|++.+++..+.+++..+.+.+ ..++..+++
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n 226 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVN 226 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHh
Confidence 466778999999999999999999999999876 777877777666555555544444444444444432 122333444
Q ss_pred HHHHHHhccccHHHHHHHH-------------------------------HHHHHHHhccccCCChhhHHHHHHHHHcCC
Q 041822 144 IMLSRISKFQSYEETLEAF-------------------------------DRMEREIFVGIRKFGSEEFNVLLQAFCTQK 192 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 192 (500)
.++..|++.|++++|.++| ++|...+ ..||..+|+.++.+|++.|
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g----~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS----VDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCChhHHHHHHHHHHhcC
Confidence 4444455555555555544 4444443 3444445555555555555
Q ss_pred CHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 193 EMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 193 ~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
+++.|.+++..|.+ |+.||..+|+.|+.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 55555555544443 444555555555555555555555555555543 2355555555556666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041822 272 EMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD 351 (500)
Q Consensus 272 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 351 (500)
+|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||.+|+++|++++|.++|++|.+ +|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CC
Confidence 66666666666666666666666666666666666666666666666667777777777777777777776654 36
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC-------------
Q 041822 352 NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF------------- 418 (500)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------- 418 (500)
..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 66777777777777777777777777765 5788888888888877777777777777777666554
Q ss_pred -----------------CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHH
Q 041822 419 -----------------CPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDR 481 (500)
Q Consensus 419 -----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 481 (500)
.+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..+++.++++
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 456777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCccccc
Q 041822 482 MIKNLQAVLPPPTRQQV 498 (500)
Q Consensus 482 ~~~~~~~~~~p~~~hyv 498 (500)
.|.+..+ ..|+.+||.
T Consensus 614 ~M~~~~g-i~P~~~~y~ 629 (857)
T PLN03077 614 SMEEKYS-ITPNLKHYA 629 (857)
T ss_pred HHHHHhC-CCCchHHHH
Confidence 9997777 467888885
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-56 Score=462.22 Aligned_cols=414 Identities=16% Similarity=0.189 Sum_probs=342.5
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++...|+.++..|.+.|++++|+++|+.|... |+.||..+|+.++.+|++.|+++.|.+++..+.+.+ ..++..+++
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n 327 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCN 327 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHH
Confidence 456678999999999999999999999999876 789999999999999999999999999999998865 456778899
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGF 222 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~ 222 (500)
.++..|++.|++++|.++|++|. .+|..+||++|.+|++.|++++|.++|++|.+ ++.||..||+.++.+|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~--------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRME--------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCC--------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999983 56888999999999999999999999999986 8899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------------
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV-------------------------- 276 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------------- 276 (500)
++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+.
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999888888888888888888888888877542
Q ss_pred ----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 277 ----ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352 (500)
Q Consensus 277 ----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 352 (500)
++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++||++|+++|++++|.++|+++ .+|.
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 2344444444444444444444444455555555555555555566667777777777777777776 4688
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHH-HCCCCCCHhHHHHHHHH
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI-DRGFCPHGHALDLLVTG 431 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~ 431 (500)
.+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 67999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhccCCCCccccc
Q 041822 432 LCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQV 498 (500)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~hyv 498 (500)
|++.|++++|.+++++| .+.||..+|++|+.+|...|+.+.++...+.+.+. .|.+...|+
T Consensus 635 l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l---~p~~~~~y~ 695 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL---DPNSVGYYI 695 (857)
T ss_pred HHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCCCcchHH
Confidence 99999999999999988 57889999988888888777777777666555543 455555554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-56 Score=449.95 Aligned_cols=411 Identities=15% Similarity=0.162 Sum_probs=371.9
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++...++.++..+.+.++.+.|.+++..+.+. |+.||..+|+.++..|++.|++++|.++|++|.+ ++..+|+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n 193 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWG 193 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHH
Confidence 467778888888888888888888888888776 7888888888888888888888888888888864 2445688
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhcc-------------------------------ccCCChhhHHHHHHHHHcCC
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVG-------------------------------IRKFGSEEFNVLLQAFCTQK 192 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~ll~~~~~~~ 192 (500)
.++.+|++.|++++|+++|++|.+.+..+ ...+|..+||+|+.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 88888888888888888888887654211 13567778899999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041822 193 EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEE 272 (500)
Q Consensus 193 ~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (500)
++++|.++|++|.+ +|..+||.|+.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..
T Consensus 274 ~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 274 DIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred CHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999974 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 273 MERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352 (500)
Q Consensus 273 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 352 (500)
|.+.|+.||..+|+.++++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999999999999999999999975 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIE-GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTG 431 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 431 (500)
.||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.++++.|++++|.+++++| ++.|+..+|++++.+
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA 503 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 9999999999999999999999999985 699999999999999999999999999998765 678999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHhhccCCC
Q 041822 432 LCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPP 492 (500)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 492 (500)
|...|+++.|..+++++. ++.|+ ..+|..+++.|.+.|++++|.++++.|++.+-..+|
T Consensus 504 ~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 999999999999999997 45564 679999999999999999999999999988754444
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-26 Score=241.74 Aligned_cols=401 Identities=12% Similarity=0.108 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
...++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+..|. +...+..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK--NLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHH
Confidence 34566677777888888888888888877643 455666777777777888888888888887776554 34556666
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+.+.|+.++|...|+++... .+.+...+..++..+.+.|++++|..+++.+.+..+.+..+|..+..++...
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAEL-----NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 77777777777777777776655 3445566666677777777777777777776665566666677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLF 305 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (500)
|++++|...|+.+.+.. +.+...+..+..++.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776666543 2245556666666666666666666666666543 233455555566666666666666666
Q ss_pred HhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 041822 306 DEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 385 (500)
+.+.+.+ +.+...+..+...+...|++++|.+.|+.+...+. +..++..+...+.+.|++++|.+.++++.+.. +.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 6655543 23444555555555555555555555555554432 22334444455555555555555555544432 22
Q ss_pred CHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH---------------------------------HHHHHH
Q 041822 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD---------------------------------LLVTGL 432 (500)
Q Consensus 386 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------------------------~li~~~ 432 (500)
+...+..+...|...|+.++|.+.|+++.+.. +.+..+++ .+...+
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 34444444445555555555555555554432 22333444 444455
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 433 CSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
...|++++|.++++++.+.+.. +..++..+..++.+.|+.++|.++++.|
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555544332 4445555555555555555555555444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-25 Score=236.72 Aligned_cols=401 Identities=9% Similarity=0.041 Sum_probs=347.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
.....++..+.+.|++++|+++++.+... .+.++.++..+...+...|++++|.+.|+++.+..|. +...+..+..
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~ 507 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD--FFPAAANLAR 507 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHH
Confidence 44456677888999999999999999875 4678889999999999999999999999999987665 4456777888
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.+...|++++|.+.|+++... .+.+..++..+...+.+.|+.++|..+++++.+..+.+...+..++..+.+.|+
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTI-----DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 899999999999999999876 467888999999999999999999999999988777788899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
+++|..+++.+.+.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++|..++++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998763 4578899999999999999999999999998765 34677888999999999999999999999
Q ss_pred chhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 041822 308 MPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKT 387 (500)
Q Consensus 308 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 387 (500)
+.+.. +.+..++..+...+...|++++|.++++.+.+.+.. +...+..+...+...|++++|.+.|+++... .|+.
T Consensus 661 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 736 (899)
T TIGR02917 661 ALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSS 736 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCc
Confidence 98874 446889999999999999999999999999987643 6778888999999999999999999999876 4555
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 388 RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYL 467 (500)
Q Consensus 388 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 467 (500)
.++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 777889999999999999999999999864 4577889999999999999999999999998764 34566677777777
Q ss_pred HHcCchhHHHHHHHHHHHh
Q 041822 468 VQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (500)
...|+ ++|..+++.....
T Consensus 815 ~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL 832 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh
Confidence 77777 5566655555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-20 Score=195.98 Aligned_cols=401 Identities=9% Similarity=-0.002 Sum_probs=276.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHH---------
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM--------- 142 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------- 142 (500)
.....+...|++++|+..|+.+++.. |.+...+..+..++.+.|++++|+..|++..+..|.......+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 34566778899999999999999863 5678899999999999999999999999999887765432222
Q ss_pred ---HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 143 ---SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 143 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
......+.+.|++++|+..|++.... .+.+...+..+...+...|++++|++.|+++.+..+.+...+..+.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQV-----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22344577899999999999999887 4667888899999999999999999999999975556666665555
Q ss_pred HHHH------------------------------------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 220 LGFK------------------------------------------ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 220 ~~~~------------------------------------------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
..+. ..|++++|...|++..+.. +-+...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5443 3444455555555444432 11233444444455
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh---------hHHHHHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG---------AYNAMISSLI 328 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~ 328 (500)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555544422 1122222222223344455555555554443221111111 1123345566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 041822 329 RCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLN 408 (500)
Q Consensus 329 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 408 (500)
..|+.++|..+++. ...+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|+.++|.+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 67777777777661 12355566778888999999999999999998753 3347788889999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 409 LWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR--QV---SEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
.++.+.+.. +.+...+..+..++...|++++|.++++++..... .| +...+..+...+...|+.++|...++..
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999887643 23455667788889999999999999999986432 12 2245666788899999999999998877
Q ss_pred HHhhc
Q 041822 484 KNLQA 488 (500)
Q Consensus 484 ~~~~~ 488 (500)
-...+
T Consensus 738 l~~~~ 742 (1157)
T PRK11447 738 MVASG 742 (1157)
T ss_pred HhhcC
Confidence 65444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-21 Score=185.56 Aligned_cols=300 Identities=14% Similarity=0.108 Sum_probs=221.4
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-C---CHHhHHHHHHHHH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-P---NNKTMNILLLGFK 223 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~---~~~~~~~l~~~~~ 223 (500)
.+...|++++|...|+++.+. .+.+..++..+...+...|++++|..+++.+.+... + ...++..+...+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV-----DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 355667788888888887765 355666778888888888888888888888775211 1 1245777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS----LQTITTLIHGAGLVRNIH 299 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~ 299 (500)
+.|+++.|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888887652 34567788888888888888888888888877552222 123455666777888888
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
+|.+.|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+.......++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888887754 234567777788888888888888888888776433334567778888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCC
Q 041822 380 EGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS---RGRWEEAFECSKQMLVRRRQVS 456 (500)
Q Consensus 380 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~ 456 (500)
+. .|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.++++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 65 466566677888888888888888888888775 4777778777776664 4588888888888888777666
Q ss_pred HH
Q 041822 457 EA 458 (500)
Q Consensus 457 ~~ 458 (500)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 55
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-20 Score=180.00 Aligned_cols=298 Identities=15% Similarity=0.060 Sum_probs=247.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS---VVTYNIRIDGYCKK 260 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 260 (500)
....+...|++++|...|.++.+..+.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567889999999999999986677788999999999999999999999999987643222 35678889999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCC----HhhHHHHHHHHHhcCCHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPD----IGAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a 336 (500)
|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998763 45678899999999999999999999999988653332 22456778888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC
Q 041822 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 416 (500)
...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......++..+..++...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999876433 456778888999999999999999999987532222466788999999999999999999999986
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCchhHHHHHHHHHHHhh
Q 041822 417 GFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ---ANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 417 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 487 (500)
. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+..
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 4 66667788999999999999999999999865 6898899888877764 457888888777776544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-20 Score=168.17 Aligned_cols=334 Identities=13% Similarity=0.071 Sum_probs=165.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc------------
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV------------ 171 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------ 171 (500)
++|..+..++-..|++++|+..++.+.+..|+.. ..|..+..++...|+.+.|.+.|.+..+....
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fi--da~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFI--DAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhh--HHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 4455555555555666666666666555544422 34555555555555555555555544433100
Q ss_pred -----------------cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 041822 172 -----------------GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMF 234 (500)
Q Consensus 172 -----------------~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 234 (500)
...+--..+|..|...+-..|+...|++-|++.++-.+--...|-.|...|...+.++.|...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 001222334444444444445555555544444432222334444455555555555555544
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhchhCC
Q 041822 235 YHEMVLRGFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS-LQTITTLIHGAGLVRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 235 ~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 312 (500)
|.+.... .| ....+..+...|...|..+-|+..|++..+.. |+ ...|+.|..++-..|+..+|.+.|.+.....
T Consensus 275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 4444433 22 23344444444455555555555555554432 32 3345555555555555555555555555442
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHH
Q 041822 313 LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVV 391 (500)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~ 391 (500)
..-....+.|...|...|.+++|..+|....+.... -...++.|...|-++|++++|+..|++.++ +.|+ ...|+
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 123344555555555555555555555554443221 223445555555555555555555555543 3444 44555
Q ss_pred HHHHHHHHcCCHhhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 392 MLMKFFCVNFRVDLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 392 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
.+...|-..|+++.|.+.+.+.+..+ |. ...++.|...|...|+..+|+.-+++..
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 55555555555555555555555532 32 2345555556666666666666666555
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-18 Score=172.45 Aligned_cols=396 Identities=12% Similarity=0.051 Sum_probs=225.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHH
Q 041822 70 ENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRI 149 (500)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (500)
+......+.+.|++++|++.|+.++.. .|++..|..+..++.+.|++++|++.++...+..|+ ....+..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Confidence 345667788899999999999999975 478888999999999999999999999999998665 456788889999
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH-----------------
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN----------------- 212 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~----------------- 212 (500)
...|++++|+..|..+...+ +.+......++..+.. ..+........+..+++.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIID-----GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhC-----CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 99999999998776554321 1111111111111100 000000111000000000
Q ss_pred ----------------HhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 213 ----------------KTMNILLLGF---KESGDVTAMEMFYHEMVLRG-FRP-SVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 213 ----------------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
..+..+...+ ...+++++|...|+...+.+ ..| +...|+.+...+...|++++|+..|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0000000000 11245566666666666543 122 33445555566666666666666666
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041822 272 EMERVACLPS-LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH 350 (500)
Q Consensus 272 ~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 350 (500)
+..+.. |+ ...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|++..+....
T Consensus 356 kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~- 431 (615)
T TIGR00990 356 KSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD- 431 (615)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-
Confidence 666543 33 4455556666666666666666666665543 224556666666666666666666666666655332
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHh------H
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGH------A 424 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~ 424 (500)
+...+..+...+.+.|++++|+..|++..+.. +-+...++.+...+...|++++|.+.|+..++.....+.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 34455555666666666666666666665431 2225555666666666666666666666666532111110 1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 425 LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
++..+..+...|++++|.+++++..+... -+...+..+...+...|+.++|..+++....
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11112223334666666666666654321 1223455666666666666666666555433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-20 Score=168.73 Aligned_cols=349 Identities=13% Similarity=0.087 Sum_probs=286.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHH-----
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKS----- 141 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----- 141 (500)
...+.-+...+...|+..+|+.+++.+.+.. +-..+.|..+..++...|+.+.|.+.|.+..+..|+.....+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 4445567788889999999999999999864 456778999999999999999999999888887665433211
Q ss_pred ---------------------------HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH
Q 041822 142 ---------------------------MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM 194 (500)
Q Consensus 142 ---------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 194 (500)
|..+...+-..|+...|+.-|++..+. .|.-..+|-.|...|...+.+
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-----dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-----DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC-----CCcchHHHhhHHHHHHHHhcc
Confidence 222333345567777777777777655 355578899999999999999
Q ss_pred HHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 195 KEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 195 ~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
+.|...|.+...--+-....+..|...|...|.+|-|...|++.++. .|+ ...|+.|..++-..|++.+|...|.+.
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999999998755667889999999999999999999999999987 444 678999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 041822 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD-N 352 (500)
Q Consensus 274 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 352 (500)
.... +--....+.|...|...|.+++|..+|....+-. +--...++.|...|-..|++++|+..|++.... .|+ .
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 8864 3346678899999999999999999999988853 223567899999999999999999999998875 444 4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH-GHALDLLVT 430 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~ 430 (500)
..|+.+...|-..|+...|...+.+.+.. .|. ...++.|...+-..|++.+|++-++..++. +|| ...|..++.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh 498 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLH 498 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHH
Confidence 57888999999999999999999998874 566 678889999999999999999999999985 465 345656665
Q ss_pred HH
Q 041822 431 GL 432 (500)
Q Consensus 431 ~~ 432 (500)
++
T Consensus 499 ~l 500 (966)
T KOG4626|consen 499 CL 500 (966)
T ss_pred HH
Confidence 54
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-18 Score=182.44 Aligned_cols=400 Identities=11% Similarity=0.015 Sum_probs=248.4
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc------------------cHH
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL------------------TLK 140 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------------~~~ 140 (500)
..++.++|++.++.+.+.. |.+...+..+...+...|+.++|++.++++.+..+... ...
T Consensus 159 ~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 3567777777777777653 44566666777777777777777777777644211000 000
Q ss_pred HH----------------------------------HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 141 SM----------------------------------SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 141 ~~----------------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
.+ ......+...|++++|+..|++..+. .|.+..++..+..
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~-----~P~~~~a~~~Lg~ 311 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA-----NPKDSEALGALGQ 311 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence 00 01123345567777777777777765 3556777777777
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCC--HHhH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPN--NKTM------------NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
++.+.|++++|+..|++..+..+.+ ...| ......+.+.|++++|...|+++.+.. +.+...+..
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~ 390 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLG 390 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8888888888888887776532211 1111 122345567777788888877777663 234556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH------------------------------------------HH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTL------------------------------------------IH 290 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l------------------------------------------l~ 290 (500)
+...+...|++++|++.|++..+.. +.+...+..+ ..
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 7777888888888888888777643 1122222222 22
Q ss_pred HHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 041822 291 GAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEG 370 (500)
Q Consensus 291 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (500)
.+...|++++|++.|++..+... -+...+..+...|.+.|++++|...++++.+.... +...+..+...+...|+.++
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHH
Confidence 33455677777777777766532 24556666777777777777777777776654322 22222222222233333333
Q ss_pred HHHHHHHHHhC---------------------------------------CCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 041822 371 VCKLYDRMIEG---------------------------------------KFVPKTRTVVMLMKFFCVNFRVDLGLNLWG 411 (500)
Q Consensus 371 a~~~~~~~~~~---------------------------------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 411 (500)
|...++.+... ..+.+...+..+...+.+.|++++|...++
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333221100 012334455566777788899999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHhhccC
Q 041822 412 YLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLEDLDRMIKNLQAVL 490 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (500)
..++.. +.+...+..++..|...|++++|.+.++...+. .|+ ...+..+..++...|+.++|..+++.+.......
T Consensus 628 ~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 628 RVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 988864 335778888899999999999999999987753 333 4455667788889999999999998887765433
Q ss_pred CC
Q 041822 491 PP 492 (500)
Q Consensus 491 ~p 492 (500)
+|
T Consensus 705 ~~ 706 (1157)
T PRK11447 705 PP 706 (1157)
T ss_pred Cc
Confidence 43
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-19 Score=175.83 Aligned_cols=362 Identities=9% Similarity=0.020 Sum_probs=283.4
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
++..+.+.|++.+|+.+++..+... +-+...+..++.++...|++++|...++.+.+..|+. ...+..+...+...
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~--~~a~~~la~~l~~~ 123 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ--PEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHc
Confidence 3455667899999999999998863 5566677777778888999999999999999988775 45677788889999
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
|++++|...+++.... .|.+...+..+...+...|++++|...++.+....+.+...+..+ ..+...|++++|.
T Consensus 124 g~~~~Ai~~l~~Al~l-----~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 124 KQYATVADLAEQAWLA-----FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999876 467788999999999999999999999998876445555555444 3478899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHhc
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ----ARQLFDEM 308 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~ 308 (500)
..++.+.+....++...+..+..++...|++++|+..+++..+.. +.+...+..+...+...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999998876433445555666788899999999999999999865 4456778888999999999885 89999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-
Q 041822 309 PKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKT- 387 (500)
Q Consensus 309 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~- 387 (500)
.+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...|+++... .|+.
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 8874 336778999999999999999999999999887544 5566777889999999999999999998875 4553
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH----HHHHHHhcCCCHHHHHHHHHHHH
Q 041822 388 RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD----LLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 388 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
..+..+..++...|+.++|...|+...+....--...|. .+-.++...+..++......+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 334445667889999999999999998753221122332 23333334444444434555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-19 Score=177.26 Aligned_cols=333 Identities=9% Similarity=-0.035 Sum_probs=277.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
.-...++..+.+.|++++|..+++......|...+ .+..++.+....|++++|...|+++... .|.+...+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~--~l~~l~~~~l~~g~~~~A~~~l~~~l~~-----~P~~~~a~~~ 115 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD--LLRRWVISPLASSQPDAVLQVVNKLLAV-----NVCQPEDVLL 115 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh--HHHHHhhhHhhcCCHHHHHHHHHHHHHh-----CCCChHHHHH
Confidence 34556778889999999999999999998777544 5556666777899999999999999887 5778889999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 263 (500)
+...+.+.|++++|...++++.+-.+.+...+..+...+...|++++|...+..+...... +...+..+ ..+...|++
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCH
Confidence 9999999999999999999999866778889999999999999999999999988766322 33344333 347889999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHH----HHHH
Q 041822 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA----AMEL 339 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~ 339 (500)
++|...++.+.+....++...+..+..++...|++++|...++++.+.+ +.+...+..+...|...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 9999999998876533455556666788899999999999999999875 3467788889999999999986 8999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 340 MDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
|++..+.... +...+..+...+.+.|++++|...+++..+. .|+ ...+..+..++...|++++|...++.+.+.+
T Consensus 273 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 273 WRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9999887544 6778889999999999999999999999875 444 6667778889999999999999999999854
Q ss_pred CCCH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 419 CPHG-HALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 419 ~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
|+. ..+..+..++...|+.++|...|++..+.
T Consensus 349 -P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 -GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 443 33444567889999999999999999865
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-18 Score=172.52 Aligned_cols=410 Identities=9% Similarity=0.039 Sum_probs=302.9
Q ss_pred CCCCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHH
Q 041822 61 TTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK 140 (500)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 140 (500)
..+.++..+..- .++..-.|+.++|++.+..+.... +.+...+..+...+...|++++|.++++...+..|.. ..
T Consensus 10 ~~~~~~~~~~d~-~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~--~~ 84 (765)
T PRK10049 10 KSALSNNQIADW-LQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN--DD 84 (765)
T ss_pred ccCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH
Confidence 345566666543 355567899999999999988632 4566678899999999999999999999999887664 34
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
....+...+...|++++|+..++++.+. .|.+.. +..+..++...|+.++|+..++++.+..|.+...+..+..
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSG-----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5667778889999999999999999877 466777 8889999999999999999999999877778888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CCCCCHH-H
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGFRPSV------VTYNIRIDGYC-----KKGCF---GDAMRLFEEMERV-ACLPSLQ-T 284 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~ 284 (500)
++...+..+.|...++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 88888999999988876553 2221 11222233222 22334 7788888888854 1223221 1
Q ss_pred H----HHHHHHHHccCCHHHHHHHHHhchhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 041822 285 I----TTLIHGAGLVRNIHQARQLFDEMPKRNLK-PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH---DNVTYH 356 (500)
Q Consensus 285 ~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 356 (500)
+ ...+.++...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 1 11134456779999999999999887532 322 22335778999999999999999987653221 134456
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCH
Q 041822 357 TMFFGLMKSSGLEGVCKLYDRMIEGK-----------FVPK---TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHG 422 (500)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 422 (500)
.+..++...|++++|..+++.+.+.. -.|+ ...+..+...+...|++++|+++++++.... +.+.
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~ 393 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQ 393 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 66778889999999999999988642 1123 2344566677888899999999999998864 4457
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 423 HALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE-ASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
..+..+...+...|++++|++.+++..+. .|+. ..+......+...|+++.|+.+++.+.....
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 78888999999999999999999998864 4653 4445666788889999999999888877643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-17 Score=165.33 Aligned_cols=383 Identities=9% Similarity=-0.017 Sum_probs=288.4
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+...+..+...+...|++++|+++|+.+++.. |.+...+..++.++...|++++|...++++.+..|.... +..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~---~~~ 121 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN---LLA 121 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHH
Confidence 445567788888999999999999999998863 567778888999999999999999999999998776543 777
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH------HhHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN------KTMNIL 218 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~------~~~~~l 218 (500)
+..++...|+.++|+..++++.+. .|.+...+..+..++...|..+.|++.++.... .|+. .....+
T Consensus 122 la~~l~~~g~~~~Al~~l~~al~~-----~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~ 194 (765)
T PRK10049 122 LAYVYKRAGRHWDELRAMTQALPR-----APQTQQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAEL 194 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHH
Confidence 788899999999999999999987 467788888889999999999999999987764 2221 112222
Q ss_pred HHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHH
Q 041822 219 LLGFK-----ESGDV---TAMEMFYHEMVLR-GFRPSVV-TY----NIRIDGYCKKGCFGDAMRLFEEMERVACL-PSLQ 283 (500)
Q Consensus 219 ~~~~~-----~~~~~---~~a~~~~~~~~~~-g~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~ 283 (500)
+.... ..+++ ++|...++.+.+. ...|+.. .+ ...+.++...|++++|+..|+++.+.+.. |+.
T Consensus 195 ~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 195 VRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred HHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-
Confidence 33222 12234 6788888888854 2233321 11 11134456779999999999999987632 322
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------C
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKP---DIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI-----------G 349 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~ 349 (500)
.-..+..+|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+..... .
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 22225678999999999999999987653211 134566677788999999999999999987632 1
Q ss_pred CC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH
Q 041822 350 HD---NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD 426 (500)
Q Consensus 350 ~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 426 (500)
|+ ...+..+...+...|+.++|++.++++.... +-+...+..+...+...|++++|++.+++.++.. +-+...+-
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~ 431 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEV 431 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHH
Confidence 23 2244567778889999999999999998752 3347778888889999999999999999999854 23456666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 427 LLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
..+..+...|++++|..+++++.+. .|+......+-
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 7777889999999999999999964 45555433333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-15 Score=153.60 Aligned_cols=395 Identities=10% Similarity=0.016 Sum_probs=248.1
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCH-HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTP-DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
.+.|++..|++.|+++++.. |+. .....++..++..|+.++|+..+++.. .|..........+...|...|+++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~---P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG---PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC---ccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45566666666666655542 221 112255555555566666666666555 233333334444444555556666
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
+|+++|+++.+. .|.+...+..++..+.+.++.++|++.++++.+. .|+...+..++..+...++..+|...++
T Consensus 120 ~Aiely~kaL~~-----dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 120 QALALWQSSLKK-----DPTNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HHHHHHHHHHhh-----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 666666666555 3444555555555556666666666666665542 2233333333333333344434555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChh------------------------------------------------HHHH
Q 041822 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFG------------------------------------------------DAMR 268 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~~~~~~g~~~------------------------------------------------~a~~ 268 (500)
++.+.. +-+...+..++.+..+.|-.. .|+.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 555552 112333333333333333322 2333
Q ss_pred HHHHHHHc-CCCCCH-H----HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 269 LFEEMERV-ACLPSL-Q----TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 269 ~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (500)
-++.+... +-.|.. . +..-.+-++...+++.++++.|+.+...+.+.-..+-..+.++|...++.++|+.+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33333331 111321 1 22234567788999999999999999988665667889999999999999999999999
Q ss_pred HHHCC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-----------CC--C-HHHHHHHHHHHHHcCCH
Q 041822 343 MEEKR-----IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF-----------VP--K-TRTVVMLMKFFCVNFRV 403 (500)
Q Consensus 343 ~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p--~-~~~~~~ll~~~~~~~~~ 403 (500)
+.... ..++......|.-+|...+++++|..+++++.+... .| | ...+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 87643 122344457889999999999999999999986311 12 2 23344566677889999
Q ss_pred hhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHHHHHH
Q 041822 404 DLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLEDLDRM 482 (500)
Q Consensus 404 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 482 (500)
.+|++.++++.... +-|......+...+...|++.+|++.++..... .|+ ..+......++...+++..+..+.+.
T Consensus 433 ~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999998764 458888999999999999999999999777643 555 44456778888889999999888877
Q ss_pred HHHhh
Q 041822 483 IKNLQ 487 (500)
Q Consensus 483 ~~~~~ 487 (500)
+....
T Consensus 510 l~~~~ 514 (822)
T PRK14574 510 VISRS 514 (822)
T ss_pred HHhhC
Confidence 65554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-16 Score=157.81 Aligned_cols=376 Identities=11% Similarity=-0.026 Sum_probs=270.4
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
....+.-+..++...|++++|++.++.+++.. +.+...+..+..++...|++++|+.-|..+....+.. . .....+
T Consensus 159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~-~-~~~~~~ 234 (615)
T TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR-N-EQSAQA 234 (615)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-c-HHHHHH
Confidence 34567777888999999999999999999863 5567789999999999999999999887766543221 1 111122
Q ss_pred HHHHhccccHHHHHHHHHHHHH-------------H--------Hhc---cccCCChhhHHHHHHHH---HcCCCHHHHH
Q 041822 146 LSRISKFQSYEETLEAFDRMER-------------E--------IFV---GIRKFGSEEFNVLLQAF---CTQKEMKEAR 198 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~-------------~--------~~~---~~~~~~~~~~~~ll~~~---~~~~~~~~A~ 198 (500)
+..+........+...++.-.. . +.. ...+.....+..+...+ ...+++++|.
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 2111111111111111111000 0 000 00000001111111111 2246799999
Q ss_pred HHHHHhhh-C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 199 SVFVKLLS-R--FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 199 ~~~~~m~~-~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
+.|+...+ + .+.+...|+.+...+...|++++|...++...+. .|+ ...|..+...+...|++++|+..|++..
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 392 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKAL 392 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999986 2 2345677888899999999999999999999876 344 6688888999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 041822 275 RVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354 (500)
Q Consensus 275 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 354 (500)
+.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.... +...
T Consensus 393 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~ 469 (615)
T TIGR00990 393 KLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDV 469 (615)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 764 3457788899999999999999999999999875 336777888999999999999999999998876433 6778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHH
Q 041822 355 YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTR------TVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLL 428 (500)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 428 (500)
++.+...+...|++++|.+.|++..+..-..+.. .++.....+...|++++|.+++++.++.. +.+...+..+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~l 548 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 8889999999999999999999988643111111 11222223344699999999999998865 2344578889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
...+.+.|++++|.+.|++..+.
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-15 Score=133.24 Aligned_cols=389 Identities=15% Similarity=0.226 Sum_probs=246.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC--ChH-HHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 71 NVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR--YFD-QAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 71 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
+-|+.. ..++....+.-+|+.|... |.+.++..-..++..-+-.+ ... .-++.|-.|...+ ..+..+|
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW----- 190 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW----- 190 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc-----
Confidence 344443 5678889999999999987 67788877666665543322 222 2233333333322 1122222
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~ 226 (500)
+.|.+.+ -+|+. .|.+..+|..+|.++|+--..+.|.+++++... ..+.+..+||.+|.+-.-..
T Consensus 191 ---K~G~vAd--L~~E~---------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFET---------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred ---ccccHHH--HHHhh---------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc
Confidence 3344433 22322 355677888888888888888888888888775 56778888888887654332
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-H
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDA----MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ-A 301 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a 301 (500)
..+++.+|....++||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +
T Consensus 257 ----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 257 ----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred ----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 267778888888888888888888888888877654 5677788888888888888888888888777643 3
Q ss_pred HHHHHhchh----CCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHHcC
Q 041822 302 RQLFDEMPK----RNLKP----DIGAYNAMISSLIRCRDLNAAMELMDEMEEK----RIGHD---NVTYHTMFFGLMKSS 366 (500)
Q Consensus 302 ~~~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g 366 (500)
..++.++.. .-++| |...|...+..|.+..+.+-|.++-.-.... -+.|+ ..-|..+....++..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 344444332 22222 4455667777777778887777776544332 11222 233556667777777
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCC-CH-------
Q 041822 367 GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRG-RW------- 438 (500)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~------- 438 (500)
..+...+.|+.|+-.-+.|+..+...++++....+.++-..++|..++..|...+...-..++..+++.. ..
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 8888888888888777778888888888888888888888888888887775554444444444444433 10
Q ss_pred -HH-----HHHHH-------HHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 439 -EE-----AFECS-------KQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 439 -~~-----A~~~~-------~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
.. |..++ .+|. .........+...-.+.+.|..++|.+++..+.+.+.
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 00 11111 1222 2233344555666666777777777777777754443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-14 Score=143.86 Aligned_cols=384 Identities=11% Similarity=0.051 Sum_probs=278.4
Q ss_pred CCCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHH
Q 041822 62 TPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKS 141 (500)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 141 (500)
.|..+..+. -++.++...|+.++|+..++++... .+.+......+...+...|++++|+++++++.+..|+. ...
T Consensus 64 ~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n--~~~ 138 (822)
T PRK14574 64 GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTN--PDL 138 (822)
T ss_pred CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHH
Confidence 333333344 5666677779999999999888732 23444455555678888899999999999999887775 345
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..|.+...+..+..+
T Consensus 139 l~gLa~~y~~~~q~~eAl~~l~~l~~~------dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~ 212 (822)
T PRK14574 139 ISGMIMTQADAGRGGVVLKQATELAER------DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEI 212 (822)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhccc------CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 566778888889999999998888765 23344444444444445666668999999887666677777777766
Q ss_pred HHhcCCHHHHHHH------------------------------------------------HHHHHHC-CCCCCH-HHH-
Q 041822 222 FKESGDVTAMEMF------------------------------------------------YHEMVLR-GFRPSV-VTY- 250 (500)
Q Consensus 222 ~~~~~~~~~a~~~------------------------------------------------~~~~~~~-g~~~~~-~~~- 250 (500)
..+.|-...|.++ ++.+... +-.|.. ..|
T Consensus 213 l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~ 292 (822)
T PRK14574 213 LQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQ 292 (822)
T ss_pred HHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHH
Confidence 6666544333332 2222221 111221 111
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC-----CCCCHhhHHH
Q 041822 251 ---NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN-----LKPDIGAYNA 322 (500)
Q Consensus 251 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 322 (500)
.-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..+++++.... ..++......
T Consensus 293 ~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (822)
T PRK14574 293 RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADD 372 (822)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHH
Confidence 22345677889999999999999998877677788899999999999999999999986643 1234445688
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 041822 323 MISSLIRCRDLNAAMELMDEMEEKRI-------------GHDNV-TYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTR 388 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~~~~~~~-------------~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 388 (500)
|.-+|...+++++|..+++.+.+... .||-. .+..++..+...|+..+|++.++++.... +-|..
T Consensus 373 L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~ 451 (822)
T PRK14574 373 LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQN 451 (822)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 99999999999999999999987422 12222 23445677889999999999999998653 45688
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041822 389 TVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460 (500)
Q Consensus 389 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 460 (500)
....+...+...|.+.+|++.++...... +-+..+....+.++...|++++|..+.+...+. .|+....
T Consensus 452 l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 452 LRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 88888899999999999999997777653 335667778888889999999999999998854 4554433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-13 Score=141.83 Aligned_cols=457 Identities=12% Similarity=0.047 Sum_probs=261.4
Q ss_pred hhhhHhhhcCCCCChhhhhhhcc-CCCCchhHHHHHHHHHhcCCCCCCCCchhhhhhCCC------------CCCCChHH
Q 041822 2 LLAKRLKRSDKFPGISDRLALLF-STTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQ------------TTPLSSTL 68 (500)
Q Consensus 2 ~~~~~l~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 68 (500)
++.++|...|.++.+...+...+ ...........+.+.+...| ...........+.. ...+....
T Consensus 66 ~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~n~~ 143 (987)
T PRK09782 66 EFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSLAAIPVEVKSVTTVEELLAQQKACDA 143 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHhccChhHHHHHHHHHHhCCCChh
Confidence 46677888887777776666533 33333334444444444433 11111111111110 00112233
Q ss_pred HHHHHHHH--------HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHH-HHHHHcCCChHHHHHHHHHhHhhCCCCccH
Q 041822 69 VENVLGRL--------FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKT-LHILARMRYFDQAWELMSHVQRTHPSLLTL 139 (500)
Q Consensus 69 ~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 139 (500)
+...+... |.+.+...+++ + .... ...|.+.+.... ...|...|++++|++++.++.+.+|. +.
T Consensus 144 ~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~-~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl--~~ 216 (987)
T PRK09782 144 VPTLRCRSEVGQNALRLAQLPVARAQL---N-DATF-AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL--SA 216 (987)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHH---H-Hhhh-CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC--CH
Confidence 33334443 44444444444 4 2222 123345544444 88999999999999999999998655 34
Q ss_pred HHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCCHHhHH
Q 041822 140 KSMSIMLSRISK-FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RFAPNNKTMN 216 (500)
Q Consensus 140 ~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~ 216 (500)
.....+...|.. .++ +.+..+++.. .+.+...+..+...|.+.|+.++|.+++.++.. ...|...+|-
T Consensus 217 ~~~~~L~~ay~q~l~~-~~a~al~~~~--------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 217 AERRQWFDVLLAGQLD-DRLLALQSQG--------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HHHHHHHHHHHHhhCH-HHHHHHhchh--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 455666667777 466 7777775431 345888999999999999999999999999874 1223222221
Q ss_pred HH------------------------------HHHHHhc-----------------------------------------
Q 041822 217 IL------------------------------LLGFKES----------------------------------------- 225 (500)
Q Consensus 217 ~l------------------------------~~~~~~~----------------------------------------- 225 (500)
.+ +..+.+.
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 11 1222222
Q ss_pred ----------------------CCHHHHHHHHHHHHHC-C-CCC------------------------------------
Q 041822 226 ----------------------GDVTAMEMFYHEMVLR-G-FRP------------------------------------ 245 (500)
Q Consensus 226 ----------------------~~~~~a~~~~~~~~~~-g-~~~------------------------------------ 245 (500)
|+.++|.++++..... + -.+
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 2223333333332220 0 001
Q ss_pred ----------------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 041822 246 ----------------------------SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 246 ----------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
+...|..+..++.. +++++|+..+.+..... |+......+...+...|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVED 524 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCC
Confidence 11122222222222 34445555444444332 443332233334456777
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
+++|...|+++... .|+...+..+...+.+.|+.++|...++...+.... +...+..+.......|++++|...+++
T Consensus 525 ~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 525 YATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777777766443 333444555566677777777777777777665322 222222233334455788888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH
Q 041822 378 MIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE 457 (500)
Q Consensus 378 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 457 (500)
..+. .|+...+..+..++.+.|+.++|...++..++.. +.+...++.+..++...|++++|+..+++..+... -+.
T Consensus 602 AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~ 677 (987)
T PRK09782 602 SLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDP 677 (987)
T ss_pred HHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 7754 4566777777777888888888888888887754 23456677777788888888888888888775422 234
Q ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 458 ASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
..+..+..++...|+.++|...++..-..
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 56677788888888888888777766544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-13 Score=119.61 Aligned_cols=338 Identities=15% Similarity=0.172 Sum_probs=246.2
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMN 216 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~ 216 (500)
+..++..++.+.++.-+.++|.+++++-.... .+.+..+||.+|.+-.-... .+++.+|.+ +..||..|+|
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k----~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAK----GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh----heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 45678889999999999999999999887665 57789999999887543322 778889986 8999999999
Q ss_pred HHHHHHHhcCCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHH----cCC----CCCHH
Q 041822 217 ILLLGFKESGDVT----AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD-AMRLFEEMER----VAC----LPSLQ 283 (500)
Q Consensus 217 ~l~~~~~~~~~~~----~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~----~~~~~ 283 (500)
+++.+..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.+ +.|..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999999875 567888899999999999999999999998888755 4555555543 222 23456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhCC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKRN----LKPD---IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYH 356 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 356 (500)
.|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|....++.-...|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 67888888999999999988876554321 2222 2346677778888889999999999998887778888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CH--------h-----hHHHH-------HHHHHH
Q 041822 357 TMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF-RV--------D-----LGLNL-------WGYLID 415 (500)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~--------~-----~a~~~-------~~~~~~ 415 (500)
.++++..-.|.++-.-++|.+++..|..-+...-..++..+++.. .. . -|..+ -.++.+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 899999899999998899988887775544444444444444433 11 0 01111 122233
Q ss_pred CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCCHHHHH---HHHHHHHHcCchhHHHHHHHHHHH
Q 041822 416 RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR-QVSEASYR---MLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 416 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
.. ......+.....+.+.|+.++|.+++.-..+.+- .|.....+ -++......+....|....+.+..
T Consensus 518 ~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 518 QD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred cc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33 3445677777888999999999999999865543 23333344 455566677777778877777743
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-13 Score=131.58 Aligned_cols=412 Identities=10% Similarity=0.072 Sum_probs=270.2
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHF-TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++.+.+.|.+.+...+++..+..+.+.+....-. +.-...|-.+.+++-..|++++|...|.+..+..++... -.+.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~-l~~~ 346 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV-LPLV 346 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc-cccc
Confidence 45667778888888888998888888888774211 122345778888888889999998888888776555422 2345
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCC----CHHHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQK----EMKEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
.+...|.+.|+.+.+...|+.+.+. .|.+..+...|...|...+ ..+.|..++....+..+.|...|-.+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~-----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ-----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh-----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 5777888888888888888888877 4667777777777777764 456677777777766677777887777
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH------HHHH
Q 041822 220 LGFKESGDVTAMEMFYHEM----VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV---ACLPSL------QTIT 286 (500)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~------~~~~ 286 (500)
..+....-+.. +.+|... ...|-.+.....|.+...+...|++++|...|.+.... ...++. .+--
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 77665544433 4444433 34454566777788888888888888888887776543 111222 1111
Q ss_pred HHHHHHHccCCHHHHHHHHHhc----------------------------------hhCCCCCCHhhHHHHHHHHHhcCC
Q 041822 287 TLIHGAGLVRNIHQARQLFDEM----------------------------------PKRNLKPDIGAYNAMISSLIRCRD 332 (500)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~----------------------------------~~~~~~~~~~~~~~li~~~~~~g~ 332 (500)
.+...+-..++.+.|.+.|..+ ...+ ..++..+..+...+.+...
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 1222233333444444444444 3332 2234444444445555555
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 041822 333 LNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMK------------SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV 399 (500)
Q Consensus 333 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 399 (500)
+..|.+-|+.+.+. ...+|+.+.-+|...|.+ .+..++|+++|.+..... +-|...-+.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 55555555444433 112344444444444432 234677888888877653 3345556666777788
Q ss_pred cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCchhHHHH
Q 041822 400 NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR-RRQVSEASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 478 (500)
.|++..|..+|....+... -...+|-.+.++|..+|++..|+++|+...+. ...-+......|.+++...|.+.++.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 8999999999999888642 24457778889999999999999999887764 334566777888999999998888877
Q ss_pred HHHHHHHh
Q 041822 479 LDRMIKNL 486 (500)
Q Consensus 479 ~~~~~~~~ 486 (500)
........
T Consensus 738 ~ll~a~~~ 745 (1018)
T KOG2002|consen 738 ALLKARHL 745 (1018)
T ss_pred HHHHHHHh
Confidence 76555444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-12 Score=134.59 Aligned_cols=381 Identities=8% Similarity=-0.020 Sum_probs=227.2
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ 153 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (500)
+..+.+++++..+.++.. +.|.......-.......+...++....+.+.+..|. +...+..+.-...+.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~--~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLA-------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA--NLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHhccHHHHHHHHhc-------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcc
Confidence 555666676665554411 1222222222222222335566666666666665333 3334444444456677
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC---HHHHHHH----------------------HHHhh---
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE---MKEARSV----------------------FVKLL--- 205 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~----------------------~~~m~--- 205 (500)
+.++|.++|+........ ...+....+-++..|.+.+. ..++..+ ++...
T Consensus 391 ~~~~a~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 391 QSREAADLLLQRYPFQGD--ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cHHHHHHHHHHhcCCCcc--cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 777777777765442100 11233334456666665544 2222222 12222
Q ss_pred hCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 041822 206 SRFAP--NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQ 283 (500)
Q Consensus 206 ~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 283 (500)
...++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+..
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~ 543 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNE 543 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcH
Confidence 12344 66677777777766 6777788777766655 455444334444556788888888888877554 34444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (500)
.+..+..++.+.|+.++|...+++..+.+ +.+...+..+.....+.|++++|...+++..+.. |+...|..+..++.
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~ 620 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 55566667778888888888888877764 2233333333344445588888888888877654 45667777778888
Q ss_pred HcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 442 (500)
+.|++++|+..+++..+. .|+ ...+..+..++...|+.++|...++..++.. +-+...+..+..++...|++++|.
T Consensus 621 ~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 621 QRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888887765 344 5666667777788888888888888887753 235567777888888888888888
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHHcCchhHHHH
Q 041822 443 ECSKQMLVRRRQVSE-ASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 443 ~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 478 (500)
..+++..+. .|+. .+.-...+...+..+++.+.+
T Consensus 698 ~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 698 HYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 888888754 3433 222233333444444444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-12 Score=126.98 Aligned_cols=408 Identities=12% Similarity=0.080 Sum_probs=282.4
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC-CCCccHHHHHHHHHHHhccccHHH
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH-PSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
....+..++.++..+...+ +.++...+.+...+--.|+++.++.+.+.+.... ....-...+-.+.++|-..|++++
T Consensus 248 d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred chHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 3456678999998888865 5788889999999999999999999999998742 122334567789999999999999
Q ss_pred HHHHHHHHHHHHhccccCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC----CHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFG-SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG----DVTAME 232 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~----~~~~a~ 232 (500)
|...|.+..+.. +.+ +..+.-+...+...|+.+.+...|+...+..+.+..+...|...|...+ ..+.|.
T Consensus 326 A~~yY~~s~k~~-----~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 326 AFKYYMESLKAD-----NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred HHHHHHHHHccC-----CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 999999887663 233 5566788999999999999999999999988889999999999998875 446777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM----ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEM 308 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 308 (500)
.++....+.- +.|...|-.+...+-.. +...++..|... ...+-.+.....|.+...+...|+++.|...|...
T Consensus 401 ~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 401 NVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 7776666553 44777887777776654 444447666554 34555577888999999999999999999999887
Q ss_pred hhC---CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------------------------
Q 041822 309 PKR---NLKPDI------GAYNAMISSLIRCRDLNAAMELMDEMEEKRIG------------------------------ 349 (500)
Q Consensus 309 ~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------------------------ 349 (500)
... ...+|. .+--.+...+-..++.+.|.++|..+.+..+.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 665 112222 22223344444455666666666666554211
Q ss_pred ---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH------------cCCHhhHHHHHHHH
Q 041822 350 ---HDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG-KFVPKTRTVVMLMKFFCV------------NFRVDLGLNLWGYL 413 (500)
Q Consensus 350 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~ 413 (500)
.++..++.+...+.+...+..|.+-|....+. ...+|..+...|...|.. .+..+.|+++|.+.
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 12222222233333333444444433333221 112444444455554432 23467788888888
Q ss_pred HHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc-cCCC
Q 041822 414 IDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQA-VLPP 492 (500)
Q Consensus 414 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p 492 (500)
++.. +-|...-|.+.-+++..|++.+|..+|.+.++... -...+|--+..+|...|++..|.++++..-+.+. -..+
T Consensus 639 L~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 639 LRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred HhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 8864 34666777888889999999999999999988654 1334677888999999999999888776554443 2333
Q ss_pred Ccccc
Q 041822 493 PTRQQ 497 (500)
Q Consensus 493 ~~~hy 497 (500)
.+-||
T Consensus 717 ~vl~~ 721 (1018)
T KOG2002|consen 717 EVLHY 721 (1018)
T ss_pred HHHHH
Confidence 34444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-12 Score=123.27 Aligned_cols=351 Identities=12% Similarity=0.068 Sum_probs=190.5
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
+..+|+.++|.+++..++++. +.....|..+..+|-..|+.+++...+-.+....|. +...|..+.....+.|.++
T Consensus 149 lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcccHH
Confidence 344577777777777777754 566677777777777777777777766655555443 4467777777777777777
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH-----HhHHHHHHHHHhcCCHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN-----KTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~l~~~~~~~~~~~~a 231 (500)
+|.-.|.+..+. .|++...+---...|-+.|+...|.+-|.++..-.+|.. ..-..+++.+...++-+.|
T Consensus 225 qA~~cy~rAI~~-----~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 225 QARYCYSRAIQA-----NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHHHhc-----CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 777777777766 355655555566677777777777777777776433322 1223334555566666777
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhch-
Q 041822 232 EMFYHEMVLR-GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP- 309 (500)
Q Consensus 232 ~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 309 (500)
.+.++..... +-..+...++.++..+.+...++.|......+......+|..-|.+-= .++ .-+....
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~ 369 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNALCE 369 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----cccccccc
Confidence 7776666553 223355566777777777777777777776666533223322221000 000 0000000
Q ss_pred -hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 041822 310 -KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR--IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK 386 (500)
Q Consensus 310 -~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 386 (500)
..+..++..++ -++-++.+....+....+..-..+.. +.-+...|.-+..+|...|++.+|+++|..+......-+
T Consensus 370 ~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 01112222221 11112222222333333333333332 222334455555666666666666666666554433333
Q ss_pred HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 387 TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 387 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
...|.-+.+++...|..++|.+.++..+... +-+...--.|...+.+.|+.++|.++++.+
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 4455555555566666666666666655532 112233334445555666666666666554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-12 Score=122.48 Aligned_cols=413 Identities=12% Similarity=0.056 Sum_probs=293.0
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....|..|..++-..|+..+++.++-.+.... |-|...|..+.......|.+.+|.-.|.+..+..|.. ....-.
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n--~~~~~e 246 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN--WELIYE 246 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 455667789999999999999999887776643 6677899999999999999999999999999987654 455556
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH----HHHHHHHHcCCCHHHHHHHHHHhhh--CCCCCHHhHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF----NVLLQAFCTQKEMKEARSVFVKLLS--RFAPNNKTMNIL 218 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~l 218 (500)
-...|-+.|+...|.+.|.++.... .+.|..-+ -.++..+...++-+.|.+.++...+ +-..+...++.+
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~----p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLD----PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhC----CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 6677999999999999999998773 22222223 3345667777888999999998886 556677889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHHHHHHhcCChhHHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY--------------------------NIRIDGYCKKGCFGDAMRLFEE 272 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--------------------------~~li~~~~~~g~~~~a~~~~~~ 272 (500)
+..+.+...++.+......+.....++|..-| --++-++...+..+....+...
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~ 402 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF 402 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH
Confidence 99999999999999998888773222222222 1122333444444555555555
Q ss_pred HHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041822 273 MERVAC--LPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH 350 (500)
Q Consensus 273 m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 350 (500)
..+..+ .-+...|.-+..+|...|++..|+.+|..+......-+..+|-.+..+|...|..++|.+.|+.+....+.
T Consensus 403 l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~- 481 (895)
T KOG2076|consen 403 LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD- 481 (895)
T ss_pred HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-
Confidence 555553 33456788889999999999999999999988765556789999999999999999999999999886433
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCC---
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMI--------EGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC--- 419 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--- 419 (500)
+...--.|...+.+.|+.++|.+.++.+. ..+..|+..........+...|+.++-..+...|+.....
T Consensus 482 ~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~ 561 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRY 561 (895)
T ss_pred chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677889999999999998864 2234555555566666778889988877777777763211
Q ss_pred --CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH-------------------------HHHHHHHHHHHHcCc
Q 041822 420 --PHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE-------------------------ASYRMLQRYLVQANA 472 (500)
Q Consensus 420 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------------------------~~~~~l~~~~~~~~~ 472 (500)
|+..-=.....+-...+...+-......|...+..-.. ..+.-++.++.+.+.
T Consensus 562 ~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r 641 (895)
T KOG2076|consen 562 IFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQR 641 (895)
T ss_pred hcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHh
Confidence 11111112222223345566666666777776432110 123455677778888
Q ss_pred hhHHHHHHHHHHHh
Q 041822 473 NEKLEDLDRMIKNL 486 (500)
Q Consensus 473 ~~~~~~~~~~~~~~ 486 (500)
.++|..+...+...
T Consensus 642 ~qeAl~vv~~a~~~ 655 (895)
T KOG2076|consen 642 VQEALSVVFTALEA 655 (895)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888776655443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-12 Score=123.72 Aligned_cols=281 Identities=12% Similarity=0.089 Sum_probs=168.7
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhh-HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHH--HHHHHHHhcCCH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEE-FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMN--ILLLGFKESGDV 228 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~--~l~~~~~~~~~~ 228 (500)
.|+++.|.+.+....+. .+++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++
T Consensus 97 eGd~~~A~k~l~~~~~~------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCH
Confidence 57777777666554332 111222 222334446677777777777777652 33332222 225566777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL-------QTITTLIHGAGLVRNIHQA 301 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a 301 (500)
+.|...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777777664 235666667777777777777777777777776543222 1223333333344455566
Q ss_pred HHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 302 RQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
.++++.+.+. .+.++.....+...+...|+.++|.+++++..+.. ++... .++.+....++.+++.+..+...+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhh
Confidence 6666665443 23456666777777777777777777777666642 23321 1233333456777777777766654
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 382 KFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 382 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
.|+ ...+..+.+.|.+.+++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|.+++++..
T Consensus 324 --~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 324 --HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333 445566667777777777777777777764 3666666677777777777777777776654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.2e-13 Score=125.92 Aligned_cols=287 Identities=10% Similarity=-0.013 Sum_probs=160.5
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHH
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSV--VTYNIRIDGYCKKGCFGDAM 267 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~ 267 (500)
..|+++.|.+.+.+..+..+-....+-....++.+.|+.+.+..++.+..+.. |+. .........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45666666666665544222222333334455556666666666666665542 332 22333455566666677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHH-HHHHHH---HhcCCHHHHHHHHHHH
Q 041822 268 RLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN-AMISSL---IRCRDLNAAMELMDEM 343 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~g~~~~a~~~~~~~ 343 (500)
+.++.+.+.. +-+......+...+...|+++.|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666654 234455666666666667777676666666666533 222221 111111 2222222223333333
Q ss_pred HHCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHH--HHHcCCHhhHHHHHHHHHHCC
Q 041822 344 EEKRI---GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV-VMLMKF--FCVNFRVDLGLNLWGYLIDRG 417 (500)
Q Consensus 344 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~~--~~~~~~~~~a~~~~~~~~~~~ 417 (500)
.+... +.+...+..+...+...|+.++|.+++++..+. .||.... ..++.. ....++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 33321 125666666777777777777777777777664 3333210 012222 233466666777777666542
Q ss_pred CCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 418 FCPHG--HALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 418 ~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++.-
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2233 4556777777778888888887775444345677777777777788888888777777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-12 Score=123.76 Aligned_cols=290 Identities=10% Similarity=0.042 Sum_probs=153.5
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH-HhHHHHHHHHHhcCCHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN-KTMNILLLGFKESGDVT 229 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~l~~~~~~~~~~~ 229 (500)
..|+++.|.+.+.+..+. .+.....+-....++.+.|+.+.|.+.+.+..+..+.+. ...-.....+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~-----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH-----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 345555555555544332 111222233334445555666666666655544221111 12222355555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCC----HHHHH
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA---GLVRN----IHQAR 302 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~----~~~a~ 302 (500)
.|...++.+.+.+ +-+......+...+...|++++|.+.+..+.+.++.+.......-..++ ...+. .+...
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666665553 2244455555566666666666666666666554322221111111111 11122 22223
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTY-HTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
+.+....+. .+.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.
T Consensus 250 ~~~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 250 NWWKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 333332221 1225667777777777777777777777777765332211111 11112223346667777777776654
Q ss_pred CCCCC-H--HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 382 KFVPK-T--RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 382 ~~~p~-~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
.|+ + ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 343 3 44556777777888888888888854443345777777778888888888888888887754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=136.62 Aligned_cols=260 Identities=13% Similarity=0.150 Sum_probs=80.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA 187 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 187 (500)
.+...+.+.|++++|+++++.......+..+...|..+.......++++.|...++++...+ +.+...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-----~~~~~~~~~l~~l 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-----KANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccc
Confidence 44555556666666666664333221011122334444444555566666666666665542 2344455555555
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHH
Q 041822 188 FCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG-FRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
...+++++|.+++....+. .++...+..++..+.+.++++.+..+++.+.+.. .+.+...|..+...+.+.|+.++|
T Consensus 88 -~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred -ccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666555432 2345555666666666666666666666655432 234555666666666666777777
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 267 MRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345 (500)
Q Consensus 267 ~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 345 (500)
++.+++..+.. | |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..+|++..+
T Consensus 166 ~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 77666666654 3 35556666666666666666666666555543 33445556666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041822 346 KRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
.... |......+..++.+.|+.++|.++.++.
T Consensus 243 ~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 243 LNPD-DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HSTT--HHHHHHHHHHHT---------------
T ss_pred cccc-cccccccccccccccccccccccccccc
Confidence 4332 5555566666666666666666666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-12 Score=121.16 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=219.0
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHH
Q 041822 191 QKEMKEARSVFVKLLSRFAPNNKT-MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYN--IRIDGYCKKGCFGDAM 267 (500)
Q Consensus 191 ~~~~~~A~~~~~~m~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~a~ 267 (500)
.|+++.|++.+....+. .++... |-....+..+.|+++.+...+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 79999999888876543 222333 333345558899999999999999876 55554333 3367888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHH
Q 041822 268 RLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI-------GAYNAMISSLIRCRDLNAAMELM 340 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 340 (500)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999876 446778889999999999999999999999988754322 23344444444555666777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
+.+.+. .+.++.....+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.. +-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 766443 2337778888999999999999999999998874 5555322 3344455699999999999998864 34
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 421 HGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
|...+..+...+.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+.+++..+++.--.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667889999999999999999999999964 69999999999999999999999998886533
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-12 Score=115.60 Aligned_cols=405 Identities=12% Similarity=0.103 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHh-HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc---cHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDA-FEKTLHILARMRYFDQAWELMSHVQRTHPSLL---TLKSM 142 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 142 (500)
++++| |..-|.......+|+..++.+.+..-| |+... -..+..++.+.+.+.+|++.++.....-|... ....+
T Consensus 202 svl~n-laqqy~~ndm~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFN-LAQQYEANDMTAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHH-HHHHhhhhHHHHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 34443 334455667778888888888776433 44443 34566777888889999999887776544321 12334
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CC-----------C
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RF-----------A 209 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~-----------~ 209 (500)
+.+.-.+.+.|++++|+..|+...+. .|+..+--.|+-++..-|+-++..+.|.+|.. +. .
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~------~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~dd 353 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE------APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDD 353 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh------CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCC
Confidence 44555688889999999999988776 34554444455555567888888888888874 21 1
Q ss_pred CCHHhHHHHH-----HHHHhcCCHHHHHHHHHH---HHHCCCCCCHHH-------------H--------HHHHHHHHhc
Q 041822 210 PNNKTMNILL-----LGFKESGDVTAMEMFYHE---MVLRGFRPSVVT-------------Y--------NIRIDGYCKK 260 (500)
Q Consensus 210 ~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~---~~~~g~~~~~~~-------------~--------~~li~~~~~~ 260 (500)
|+....+.-+ +-+.+.+.- .|++..-. ++.--+.|+-.. + -.-..-+.+.
T Consensus 354 p~~~ll~eai~nd~lk~~ek~~ka-~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 354 PDDNLLNEAIKNDHLKNMEKENKA-DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhh-hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 2222222222 111111111 12211111 111112222100 0 1112456778
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHH--H----------------------------------HHHHccCCHHHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTL--I----------------------------------HGAGLVRNIHQARQL 304 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~l--l----------------------------------~~~~~~~~~~~a~~~ 304 (500)
|+++.|+++++-..+.+-+.-...-+.| + +.....|++++|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 8888888877766554322111111111 0 011234677777777
Q ss_pred HHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 041822 305 FDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV 384 (500)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (500)
|++.....-......||. .-.+-..|++++|++.|-++...- ..+......+...|-...+...|++++.+.... ++
T Consensus 513 ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 777776543322333332 224556677777777776554321 114455555666666666777777776554432 33
Q ss_pred CCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 385 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
.|+..+.-|...|-+.|+-.+|.+.+-.--.. ++.+..+...|..-|....-+++++.+|++.. -+.|+..-|..++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHH
Confidence 34666666666666666666665554433322 34455555555555555555556666655543 3455555554443
Q ss_pred -HHHHHcCchhHHHHHHHHHHHh
Q 041822 465 -RYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 465 -~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
.++.+.|.++.+..+++.+..+
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh
Confidence 3334556666655555554443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-15 Score=134.99 Aligned_cols=257 Identities=12% Similarity=0.072 Sum_probs=63.4
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRF--APNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
...+.+.|++++|.++++...... +.|...|..+...+...++++.|...++++.+.+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444455555555555554433222 223333333444444455555555555555544322 33344444444 45555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN-LKPDIGAYNAMISSLIRCRDLNAAMELMD 341 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 341 (500)
+++|.++++...+.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555554443332 334444445555555555555555555543321 12344445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC
Q 041822 342 EMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH 421 (500)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 421 (500)
+..+..+. |....+.++..+...|+.+++.++++...+.. ..|+..+..+..++...|+.++|...+++..+.. +.|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 55544322 34444445555555555555555554444321 2223334444555555555555555555555432 224
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 422 GHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
..+...+..++...|+.++|.++.++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444445555555555555555554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-12 Score=107.46 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 041822 192 KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR-GFRPS--VVTYNIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 192 ~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~--~~~~~~li~~~~~~g~~~~a~~ 268 (500)
.+.++|.+.|-+|.+..+.+..+--+|.+.|.+.|..|.|.++.+.+.++ +.+.+ ......|..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34555555555555544444444455555555555555555555555443 11100 1122234444555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 269 LFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI----GAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 269 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+.-..+++.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 555555543 122334445555555555555555555555544332221 123444444444555566666655555
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhH
Q 041822 345 EKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA 424 (500)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 424 (500)
+.+.+ .+..--.+.+.....|++++|.+.++...+.+..--+.+...|..+|...|+.+++...+..+.+.. ++...
T Consensus 208 qa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~ 284 (389)
T COG2956 208 QADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADA 284 (389)
T ss_pred hhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccH
Confidence 54322 2222223344555556666666666665554322224455555556666666666666655555532 22222
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 425 LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLV 468 (500)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 468 (500)
-..+...-....-.+.|...+.+-.. -+|+...+..++.+-.
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhh
Confidence 22222222223333444444333332 2355555555555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-12 Score=106.35 Aligned_cols=291 Identities=14% Similarity=0.122 Sum_probs=208.9
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--CC--CCHHhHHHHHHHHHhcC
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--FA--PNNKTMNILLLGFKESG 226 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~--~~~~~~~~l~~~~~~~~ 226 (500)
-.++.++|.+.|-+|.+. .+.+.++--+|.+.|-+.|..|.|+.+.+.+.+. .+ .-......|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhc-----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 347788888888888775 4556666778888888888888888888888753 11 11234556667777888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHH
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS----LQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~ 302 (500)
-+|.|+.+|..+.+.|. .-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 88899999888887642 2455667788888888999999988888887663333 223555666666778888999
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 382 (500)
.++++..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++.++.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999888887532 4555566777888899999999999999888655555677788889999999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHh---cCCCHHHHHHHHHHHHHcC
Q 041822 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC---SRGRWEEAFECSKQMLVRR 452 (500)
Q Consensus 383 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~ 452 (500)
..++ ....+-.......-.+.|...+.+-+.. .|+...+..+|..-. ..|+..+-...+++|....
T Consensus 280 ~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 280 TGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred CCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 3333 3334444444445556666666655554 488888888887653 3456777777888887543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-10 Score=102.47 Aligned_cols=162 Identities=17% Similarity=0.097 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLI 328 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 328 (500)
|+..+.+-|.-.++.++|...|++..+.+ +-....|+.+..-|....+...|++-++..++.+ +.|-..|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 44444444444555555555555555443 1223344445555555555555555555555443 224445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 041822 329 RCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLN 408 (500)
Q Consensus 329 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 408 (500)
-.+...-|+-.|++.....+. |...|.+|...|.+.++.++|++.|.+....| ..+...+..+...+-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 555555555555554443322 44555555555555555555555555554433 2234444555555555555555555
Q ss_pred HHHHHH
Q 041822 409 LWGYLI 414 (500)
Q Consensus 409 ~~~~~~ 414 (500)
.++.-+
T Consensus 488 ~yek~v 493 (559)
T KOG1155|consen 488 YYEKYV 493 (559)
T ss_pred HHHHHH
Confidence 544443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-09 Score=101.05 Aligned_cols=394 Identities=9% Similarity=-0.011 Sum_probs=207.6
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHh---hCCCCccHHHHHHHHHHHhccccHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQR---THPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
..|+.|..+++.+.+. +|-+...|......--..|+.+...+++.+-.. ..+...+...|..-...|-..|..-.
T Consensus 420 etYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 4566777777777663 566677776666666666777776666665543 23334455555555555555555555
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
+..+...+..-|.. ......+|+.-...|.+.+.++-|..+|...++-++-+...|......--..|..+....++++
T Consensus 498 cQAIi~avigigvE--eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVE--EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred HHHHHHHHHhhccc--cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 55555555444321 1222334555555555555555555555555544444444444444444444444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH
Q 041822 238 MVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI 317 (500)
Q Consensus 238 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 317 (500)
....- +-....|......+-..|+...|..++.+..+.. +-+...|-.-+..-..+..++.|..+|.+.... .|+.
T Consensus 576 av~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 576 AVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 44431 1123333333444444444444444444444332 113333444444444444444444444444332 2233
Q ss_pred hhH----------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 318 GAY----------------------------------NAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363 (500)
Q Consensus 318 ~~~----------------------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (500)
.+| ..+.+.+-..++++.|.+.|..-.+. +...+..|-.+...=-
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 333 33333344444444444443322221 1113334444444445
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC----C----------------------
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR----G---------------------- 417 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~---------------------- 417 (500)
+.|+.-+|..++++.+-.+ +-+...|...|+.-.+.|+.+.|..+..+.++. |
T Consensus 731 k~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred HhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence 5566666666666665442 234566667777777777777777666555542 1
Q ss_pred ---CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 418 ---FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 418 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
+..|..+.-.+...|....++++|.+.|++....+ || -.+|..+...+...|..+.-.+++++....
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 11244455566667777778888888888887543 33 346677777778888777777777766554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-11 Score=103.85 Aligned_cols=286 Identities=12% Similarity=0.080 Sum_probs=203.8
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
..|++..|++...+-.+.+ +.....|..-..+.-+.|+.+.+-.++.+..+ -..++...+-+........|+.+
T Consensus 96 ~eG~~~qAEkl~~rnae~~-----e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-----EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 3588888888877765553 33344555566667778888888888888876 23556666777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHH
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL-------QTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~ 302 (500)
.|..-++++.+.+. -+.........+|.+.|++.....++..|.+.|.-.++ .+|..+++-....+..+.-.
T Consensus 171 aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 88888888877753 35677778888888888888888888888888765543 35666666666666666666
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 382 (500)
+.|+...+. .+.++..-.+++.-+.++|+.++|.++.++..+++..|.. ...-.+.+-++.+.-++..+......
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 677766554 3446667777788888888888888888888777665541 12234456677777777666655431
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 383 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.-++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+..+|.++.++...
T Consensus 325 -~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 -PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 223466677777888888888888888877664 47888888888888888888888888877654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-12 Score=119.78 Aligned_cols=283 Identities=12% Similarity=0.043 Sum_probs=169.7
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCCHHH
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR---FAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
+..+|+..|..++.. ..-...+...+.++|...+++++|+++|+.+.+. ..-+.++|.+.+...-+.=.+.
T Consensus 334 ~~~~A~~~~~klp~h-----~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls- 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-----HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS- 407 (638)
T ss_pred HHHHHHHHHHhhHHh-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH-
Confidence 456667777765554 2333355566677777777777777777777642 2335666666665442211111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhch
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
.+-+++.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+.+ | ...+|+.+..-+.....+|.|...|+..+
T Consensus 408 --~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 408 --YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred --HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 1112222221 2356677777777777777777777777777654 3 56667766666666777777777777665
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 041822 310 KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 389 (500)
..... +-..|-.+...|.+.++++.|+-.|+...+.++. +.+....+...+.+.|+.++|+++|+++....- -|+..
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~ 559 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLC 559 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchh
Confidence 54211 2334444556677777777777777777766554 455555566666777777777777777665431 12222
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
--.-...+...++.++|+..++++++.- +-+..+|-.+...|.+.|+.+.|+.-|--|.+.
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 2233444555677777777777777632 223455666667777777777777766666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-10 Score=104.11 Aligned_cols=287 Identities=14% Similarity=0.037 Sum_probs=203.5
Q ss_pred HHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCC
Q 041822 186 QAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF--RPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~ 262 (500)
.++-.....+++.+-.....+ |++-+...-+....+.....|+++|+.+|+++.+... --|..+|..++-.--.+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444455566555555554 4555555445555555566777777777777776510 1145566555433222111
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (500)
+..+.+-...--+--+.|+..+.+.|+-.++.++|..+|+...+.+. -....|+.+..-|....+...|.+-++.
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11111111110123345666777788888899999999999999863 3678899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCH
Q 041822 343 MEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHG 422 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 422 (500)
..+-++. |-..|-.|.++|.-.+...-|+-.|++..... +-|+..+.+|..+|.+.++.++|...|......| ..+.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 9987665 88899999999999999999999999988752 3358999999999999999999999999999876 3466
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCCHHHH--HHHHHHHHHcCchhHHHHHH
Q 041822 423 HALDLLVTGLCSRGRWEEAFECSKQMLVR----RRQVSEASY--RMLQRYLVQANANEKLEDLD 480 (500)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~ 480 (500)
..+..+.+.|-+.++.++|...|++..+. |..-+.... .-|...+.+.+++++|..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 88899999999999999999999887652 433332221 22455666777777766643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-10 Score=103.79 Aligned_cols=86 Identities=13% Similarity=0.223 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC-HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH
Q 041822 70 ENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT-PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR 148 (500)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (500)
......-+.+++.+++|+++|.|++.. .|+ +.-|.....+|...|+|++..+.-....+..|+. ..++..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y--~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY--VKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH--HHHHHHHHHH
Confidence 344556677889999999999999986 477 7778889999999999999999998888876653 3456666677
Q ss_pred HhccccHHHHHH
Q 041822 149 ISKFQSYEETLE 160 (500)
Q Consensus 149 ~~~~g~~~~a~~ 160 (500)
+-..|++++|+.
T Consensus 193 ~E~lg~~~eal~ 204 (606)
T KOG0547|consen 193 HEQLGKFDEALF 204 (606)
T ss_pred HHhhccHHHHHH
Confidence 777888887754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-12 Score=119.06 Aligned_cols=285 Identities=14% Similarity=0.060 Sum_probs=193.7
Q ss_pred ChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHH
Q 041822 118 YFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEA 197 (500)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 197 (500)
+..+|...|+.+....++ +.-++..+..+|-..+++++|.++|+.+.+.... .-.+.+.|.+.+-.+-+.- +
T Consensus 334 ~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--rv~~meiyST~LWHLq~~v----~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN--TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--RVKGMEIYSTTLWHLQDEV----A 405 (638)
T ss_pred HHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cccchhHHHHHHHHHHhhH----H
Confidence 356777777776665443 2345566777777888888888888877765421 2345667777665544322 2
Q ss_pred HHHH-HHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 198 RSVF-VKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 198 ~~~~-~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
+..+ +.+.+..+-.+.+|..+.++|.-+++.+.|.+.|++.++. .| ...+|+.+..-+.....+|+|...|+....
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2222 2222334457778888888888888888888888887766 33 567777777777778888888888877665
Q ss_pred cCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 276 VACLPSLQTIT---TLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352 (500)
Q Consensus 276 ~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 352 (500)
.|...|+ .+.-.|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.|+|+.++++......+ |+
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 3444444 45556788888888888888888765 335666677777778888888888888887776554 44
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
..---.+..+...+++++|+..++++++. .|+ ...|..+...|-+.|+.+.|..-|..+.+...++
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 33333456666778888888888888764 565 5556666777788888888888887777754333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-09 Score=99.74 Aligned_cols=395 Identities=10% Similarity=0.026 Sum_probs=297.2
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
+.-+|.....+ .+++.|.-++.++.+. ++-+.+.|. +|++..-++.|..++....+.-|. +...|...
T Consensus 379 sv~LWKaAVel----E~~~darilL~rAvec--cp~s~dLwl----AlarLetYenAkkvLNkaRe~ipt--d~~IWita 446 (913)
T KOG0495|consen 379 SVRLWKAAVEL----EEPEDARILLERAVEC--CPQSMDLWL----ALARLETYENAKKVLNKAREIIPT--DREIWITA 446 (913)
T ss_pred hHHHHHHHHhc----cChHHHHHHHHHHHHh--ccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCC--ChhHHHHH
Confidence 34445444443 5677799999998874 355555544 456667789999999999987554 45677777
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CC--CCCHHhHHHHHHHH
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RF--APNNKTMNILLLGF 222 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~--~~~~~~~~~l~~~~ 222 (500)
...--..|..+...+++++-...-.......+...|-.=...|-..|..--+..+...... |+ ..-..||..-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 7777888999999998887544433333788999999999999999999999988888875 42 23457899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 302 (500)
.+.+.++-|..+|...++. ++-+...|......=-..|..+....+|++.... ++-....|-....-+-..|+...|.
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999998876 3446778888777777789999999999999875 3445666777777788899999999
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 382 (500)
.++.+..+.+. .+...|-+.+..-.....++.|..+|.+.... .|+...|.--+....-.++.++|.+++++..+.
T Consensus 605 ~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 99999998853 37788999999999999999999999988765 456677766666666678899999999888764
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 041822 383 FVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYR 461 (500)
Q Consensus 383 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 461 (500)
.|+ ...|..+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.+...=-+.|..-.|..++++.+-++.. +...|-
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHH
Confidence 666 556666777777778888888877665543 2233455666666666677777777777777655432 455566
Q ss_pred HHHHHHHHcCchhHHHHHHH
Q 041822 462 MLQRYLVQANANEKLEDLDR 481 (500)
Q Consensus 462 ~l~~~~~~~~~~~~~~~~~~ 481 (500)
..|+.=.+.|..+.|..+..
T Consensus 758 e~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 66777777777777766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-10 Score=97.50 Aligned_cols=288 Identities=10% Similarity=0.036 Sum_probs=233.7
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRL 269 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (500)
..|+|.+|++...+-.+.-......|-.-..+.-+.|+.+.+-.++.+..+..-.++....-+........|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 37999999999999877545556667777788889999999999999999874456777778888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 270 FEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI-------GAYNAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~ 342 (500)
++++.+.+ +-+.........+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998876 456778889999999999999999999999999865443 4678888877777777776677776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC-CCCCC
Q 041822 343 MEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR-GFCPH 421 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 421 (500)
...+ .+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ...-.+.+.++.+.-.+..+.-.+. +- +
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 6543 2335666677888999999999999999999887766662 2233456667777777777776653 43 4
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 422 GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
+..+.+|...|.+.+.|.+|.+.|+... ...|+..+|+.+..++.+.|+.+.+.+..+.--...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 4688899999999999999999999777 457899999999999999999999999987766443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-09 Score=95.69 Aligned_cols=393 Identities=11% Similarity=0.095 Sum_probs=275.8
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
..+++...|..+|+.++..+ ..+...|...+..-.++..+..|..+++.....-|.. ...|-..+-.=-..|+...
T Consensus 84 esq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV--dqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV--DQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH--HHHHHHHHHHHHHhcccHH
Confidence 34667788999999999854 4566678888888889999999999999988865543 2345444444456789999
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
|.++|++-.. ..|+..+|++.|+.=.+-+.++.|..+|++.+- +.|++.+|--..+.=.+.|....+..+|+.
T Consensus 160 aRqiferW~~------w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 160 ARQIFERWME------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHHHHc------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999988765 478899999999999999999999999998874 348888888888888888888888888887
Q ss_pred HHHC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---------------------------------------
Q 041822 238 MVLR-GF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV--------------------------------------- 276 (500)
Q Consensus 238 ~~~~-g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------------------------- 276 (500)
.++. |- ..+...+.+....=.++..++.|.-+|+-..+.
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 7654 21 011222222222222233333333333322110
Q ss_pred ----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH-------hhH---HHHHHHHHhcCCHHHHHHHHHH
Q 041822 277 ----ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI-------GAY---NAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 277 ----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~---~~li~~~~~~g~~~~a~~~~~~ 342 (500)
.-+-|-.+|-..++.-...|+.+...++|+..... ++|-. ..| |-.+-.=....+++.+.++|+.
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 01234456666666667778888888898888776 34421 112 1112222346788888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHH----HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 343 MEEKRIGHDNVTYHTMFFGL----MKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
..+. +.....||.-+=-.| .++.+...|.+++-..+ |.-|...+|...|..-.+.++++.+..+++..++.+
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~- 467 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS- 467 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 8773 333556665543333 46678888988887766 668888888888888888999999999999999876
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 419 CPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRR-RQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 419 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
+-+..+|.-....=...|+.+.|..+|+-..++. +......|...|..=...|..+.+..+++.+-..
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 3366778777777778899999999999888763 2334556677777778899999999998877554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-10 Score=104.00 Aligned_cols=387 Identities=11% Similarity=0.054 Sum_probs=248.9
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCC-----------CCccHHH
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHP-----------SLLTLKS 141 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~~ 141 (500)
+.-.+.+.|+++.|+..|+..... .|+..+-..++-++..-|+.++..+.|..+..... +.++...
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 334456778888888888887765 36666655555555566788888888887765311 1111122
Q ss_pred HHHHH-----HHHhccc--cHHHHHHHHHHHHHHHhccccCCChh-------------hH--------HHHHHHHHcCCC
Q 041822 142 MSIML-----SRISKFQ--SYEETLEAFDRMEREIFVGIRKFGSE-------------EF--------NVLLQAFCTQKE 193 (500)
Q Consensus 142 ~~~l~-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~~--------~~ll~~~~~~~~ 193 (500)
++..+ .-..+.+ +.++++-.--++.. ++..|+-. .+ ..-...+.+.|+
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiia----pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIA----PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc----cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 22211 1111111 11111111111100 00111100 01 111245899999
Q ss_pred HHHHHHHHHHhhhC-CCCCHHhHHHHHHH-HH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041822 194 MKEARSVFVKLLSR-FAPNNKTMNILLLG-FK-ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLF 270 (500)
Q Consensus 194 ~~~A~~~~~~m~~~-~~~~~~~~~~l~~~-~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 270 (500)
++.|.+++.-..+. .+.-...-+.|-.. |. ...++..|.++-+..+... +-+......-.+....+|++++|.+.|
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 99999999988752 22222222333222 22 2456778888776665431 112333322233445689999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041822 271 EEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH 350 (500)
Q Consensus 271 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 350 (500)
++....+-......|+.=+ .+-..|++++|++.|-++... +..+..+...+...|-...+..+|++++.+.... +..
T Consensus 514 keal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPN 590 (840)
T ss_pred HHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCC
Confidence 9998865333334444333 367789999999999877654 2336778888899999999999999999776654 444
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHH
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVT 430 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 430 (500)
|+...+.|...|-+.|+-..|++.+-+--.. ++-+..+...|...|....-++++...|++..- +.|+..-|..|+.
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIA 667 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHH
Confidence 7888999999999999999998876543221 344677888888888888889999999998765 6799999998886
Q ss_pred -HHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchh
Q 041822 431 -GLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANE 474 (500)
Q Consensus 431 -~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 474 (500)
++.+.|++++|+++++....+ ++-|...+.-|++.+...|..+
T Consensus 668 sc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 456789999999999998764 5557777788888887766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-08 Score=90.87 Aligned_cols=358 Identities=13% Similarity=0.070 Sum_probs=255.6
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETL 159 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (500)
-|+..-|.++|+....- .|+...|.+.++.-.+....+.|..+++...-.+| ....|......=.++|....|.
T Consensus 154 LgNi~gaRqiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP---~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP---KVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred hcccHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc---cHHHHHHHHHHHHhcCcHHHHH
Confidence 46777788888777653 68888888888888888888888888888877655 3445666666667788888888
Q ss_pred HHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--HHhHHHHHHHHHhcCCHHHHHHH---
Q 041822 160 EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN--NKTMNILLLGFKESGDVTAMEMF--- 234 (500)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--- 234 (500)
.+|+...+.- |....+...+++....=.++..++.|.-+|+-.++.+|.+ ...|......=-+.|+.......
T Consensus 228 ~VyerAie~~--~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEFL--GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 8888765542 2112233345555555556677888888888877766555 55566665555556665443332
Q ss_pred -----HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HccCCHH
Q 041822 235 -----YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL-------QTITTLIHGA---GLVRNIH 299 (500)
Q Consensus 235 -----~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~---~~~~~~~ 299 (500)
|+.+++.+ +-|-.+|--.++.--..|+.+...++|++.... ++|-. ..|-.+--++ ....+.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444443 446777888888888889999999999998875 44422 1222222222 3567899
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSL----IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLY 375 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (500)
.+.++|+...+. ++....||..+--+| .++.++..|.+++.... |..|-..+|...|..-.+.++++.+..+|
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999988884 455666666555554 46788999999987665 55788889998998889999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 376 DRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG-FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 376 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
++.++.+ +-+..++.-....-...|+.+.|..+|.-+++.. +......|.+.|+-=...|.++.|..+++++.+.
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999864 3356677776666677899999999999998752 2233456777787778899999999999999865
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-10 Score=111.93 Aligned_cols=148 Identities=11% Similarity=-0.039 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 041822 155 YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMF 234 (500)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 234 (500)
+++|...+++..+. .|.+..++..+...+...|++++|...|++..+..|.+...+..+...+...|++++|...
T Consensus 320 ~~~A~~~~~~Al~l-----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 320 MIKAKEHAIKATEL-----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44455555444443 2334444444444444555555555555554443333444444444455555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 041822 235 YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEM 308 (500)
Q Consensus 235 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 308 (500)
+++..+.... +...+..++..+...|++++|++.+++..+...+-+...+..+..++...|+.++|...+.++
T Consensus 395 ~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 395 INECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5554444211 111112222223334445555555444443221112222333344444445555555444443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-10 Score=115.16 Aligned_cols=250 Identities=9% Similarity=-0.014 Sum_probs=178.5
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHH---------cCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILA---------RMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
++.++|+++|+++.+.+ |.+...+..+..++. ..+++++|...+++..+..|+ +..++..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~--~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN--NPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Confidence 34679999999999864 445556655555443 234589999999999998776 44567777778889
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
.|++++|...|++..+. .|.+...+..+...+...|++++|...+++..+-.+.+...+..++..+...|++++|
T Consensus 351 ~g~~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 351 HSEYIVGSLLFKQANLL-----SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHH
Confidence 99999999999999887 4677889999999999999999999999999875444544555555567778999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 232 EMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS-LQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 232 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
...++++.+...+-+...+..+..++...|++++|...+.++.... |+ ....+.+...|+..| +.+...++.+.+
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9999998766322245567778888899999999999999876653 44 334455555667666 467776666554
Q ss_pred CC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 311 RN-LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 311 ~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.. ..+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 31 11111222 23334445666555555 666554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-10 Score=101.19 Aligned_cols=203 Identities=9% Similarity=0.065 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....+..+...+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.+++..+..|. +...+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 104 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN--NGDVLNN 104 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Confidence 334555666777777888888888888777642 445666777777777888888888888877776544 3345556
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
+...+...|++++|...|++...... .+.....+..+...+...|++++|.+.+++..+..+.+...+..+...+..
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPL---YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccc---cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 66667777777777777777664310 122344556666667777777777777777665444455666666677777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 225 SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 225 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777777766655 233455555566666666777777666665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-10 Score=100.58 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=67.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.+++..+..+.+...+..+...+
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEH-----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 33344444445555555544444333 2333444444444455555555555555544443333344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQA 301 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 301 (500)
...|++++|...++...+... ......+..+..++...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 444444444444444443211 1112233333344444444444444444444322 11222333333334444444444
Q ss_pred HHHHHhch
Q 041822 302 RQLFDEMP 309 (500)
Q Consensus 302 ~~~~~~~~ 309 (500)
...+++..
T Consensus 189 ~~~~~~~~ 196 (234)
T TIGR02521 189 RAYLERYQ 196 (234)
T ss_pred HHHHHHHH
Confidence 44444333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-09 Score=96.10 Aligned_cols=284 Identities=11% Similarity=0.051 Sum_probs=211.3
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
..++........-+...+++.+..++++...+..++....+-.-|.++.+.|+..+...+=..+++. .+-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 4455566666677778888999999999888877888888888888888888888888777777776 244677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC--C-CCCCHhhHHHHHHHHHhcC
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR--N-LKPDIGAYNAMISSLIRCR 331 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~li~~~~~~g 331 (500)
--|...|+.++|.+.|.+....+- .=...|-.....|+-.|..|+|...+...-+. | ..| ..| +.--|.+.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHH--HHHHHHHhc
Confidence 888888999999999888765431 12345777778888888888888877665442 2 122 223 334577788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHhh
Q 041822 332 DLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG------KFVPKTRTVVMLMKFFCVNFRVDL 405 (500)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~ll~~~~~~~~~~~ 405 (500)
..+.|.+.|.+.....+. |+...+-+.......+.+.+|..+|+..... ...-...+++.|..+|.+.+++++
T Consensus 395 n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 888999988887765443 6777777777777778888888888876521 111245678888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 406 GLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLV 468 (500)
Q Consensus 406 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 468 (500)
|+..+++.+... +-+..++.++.-.|...|+++.|.+.|.+.. .+.|+..+-..++..+.
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 999999888764 4577888888888889999999999999887 66788777666665443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=82.25 Aligned_cols=49 Identities=47% Similarity=0.802 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 245 PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAG 293 (500)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 293 (500)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.9e-09 Score=98.84 Aligned_cols=288 Identities=14% Similarity=0.154 Sum_probs=132.1
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc---
Q 041822 76 LFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF--- 152 (500)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 152 (500)
++...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.+|+. ...+..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn--~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN--YDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHhhhccc
Confidence 344566666676666654432 22233344566666666666666666666666665543 23344444443111
Q ss_pred --ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHH-HHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCH
Q 041822 153 --QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK-EARSVFVKLLS-RFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 153 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
.+.+....+++++...- |...+...+.-.+.....+. .+...+..+.. |+| .+|+.|-..|......
T Consensus 89 ~~~~~~~~~~~y~~l~~~y------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred ccccHHHHHHHHHHHHHhC------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHH
Confidence 23455555555554431 22222222222222211222 22223333332 322 2333444444433333
Q ss_pred HHHHHHHHHHHHC----C----------CCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 041822 229 TAMEMFYHEMVLR----G----------FRPSVVTY--NIRIDGYCKKGCFGDAMRLFEEMERVACLPS-LQTITTLIHG 291 (500)
Q Consensus 229 ~~a~~~~~~~~~~----g----------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~ 291 (500)
+-...++...... | -.|+...| ..+...|...|++++|++++++..+.. |+ +..|..-.+.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 4444444443321 0 01222222 333444555566666666666555543 33 3445555555
Q ss_pred HHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHH
Q 041822 292 AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT------Y--HTMFFGLM 363 (500)
Q Consensus 292 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~ 363 (500)
+-+.|++.+|.+.++...+.+.. |-..-+..+..+.++|++++|.+++......+..|.... | .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 55566666666555555554422 444455555555555666666555555544432221111 1 12234455
Q ss_pred HcCChhHHHHHHHHHH
Q 041822 364 KSSGLEGVCKLYDRMI 379 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~ 379 (500)
+.|++..|++.|..+.
T Consensus 317 r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVL 332 (517)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-10 Score=108.98 Aligned_cols=245 Identities=10% Similarity=0.113 Sum_probs=136.8
Q ss_pred CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCC
Q 041822 97 PHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKF 176 (500)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 176 (500)
.|+.|+..||.++|.-|+..|+.+.|- +|..|.-+. -..+...++.++......++.+.+. .|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk---------------ep 81 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK---------------EP 81 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------------CC
Confidence 388899999999999999999999888 888876543 3345566777777777777766553 45
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCC----CHHhHHHH---------------HHHHHhcCCHHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAP----NNKTMNIL---------------LLGFKESGDVTAMEMF 234 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~----~~~~~~~l---------------~~~~~~~~~~~~a~~~ 234 (500)
...+|..|..+|...|+...-..+=+.|.. .+.+ ....+-.+ +....-.|-++.+.++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 777899999999999986652222222221 1110 11111111 1111111222222222
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCC
Q 041822 235 YHEMVLRG-FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL 313 (500)
Q Consensus 235 ~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 313 (500)
+..+-... ..|. ...++-+..... -..++........-.|+..+|..++.+-..+|+.+.|..++.+|.+.|+
T Consensus 162 l~~~Pvsa~~~p~----~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPF----QVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HhhCCcccccchH----HHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 21111110 0000 001222222211 1222222221111136777777777777777777777777777777776
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (500)
+.+..-|..|+-+ .++...++.+++.|.+.|+.|+..|+..-+..+..+|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6666666666544 56666666777777777777777777666666665443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-10 Score=99.59 Aligned_cols=228 Identities=12% Similarity=0.031 Sum_probs=122.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHc
Q 041822 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQT-ITTLIHGAGL 294 (500)
Q Consensus 216 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~ 294 (500)
+.+.++|.+.|.+.+|++.++.-.+. .|-+.||..|-++|.+..++..|+.++.+-.+. .|-.+| ...+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34555555556555555555555544 344455555555666666666666655555443 133333 2334444555
Q ss_pred cCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 041822 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKL 374 (500)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 374 (500)
.++.++|.++|+...+.. +.++.....+...|.-.++.+-|+..|+++.+-|+. +...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 555666666665555542 224444444555555556666666666666665555 555555555555555566666665
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 375 YDRMIEGKFVPK--TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 375 ~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
|.+....--.|+ ...|..+-......|++..|.+.|+-.+.++ .-+...++.|.-.-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555544322233 2334444444455566666666666655543 22345555555555666666666666666553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-10 Score=96.26 Aligned_cols=229 Identities=10% Similarity=0.017 Sum_probs=147.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+.++|.+.|.+.+|.+.|+.-.+. .+-+++|-.|-++|.+-.+++.|+.+|.+-++.+|-|+....-+.+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 44666777777777777777665543 455667777777777777777777777777766666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 302 (500)
-..++.++|.++|+...+.. ..++.....+...|.-.++++-|+..|+++.+.|+ -+...|+.+.-+|.-.+++|.++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 66777777777777666552 22445555555666666777777777777777774 35556666666666667777777
Q ss_pred HHHHhchhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 303 QLFDEMPKRNLKPD--IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 303 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
.-|.+....--.|+ ..+|-.+.......||+.-|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66666655432222 234555666666667777777777766655433 445666666666677777777777776654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-10 Score=111.43 Aligned_cols=243 Identities=14% Similarity=0.113 Sum_probs=132.3
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
..|+..+|..+|.-||..|+.+.|- +|.-|.- ..+.+...|+.++.+..+.++.+.+. .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 5667777777777777777777777 7777763 56667777777777777777766555 566777777
Q ss_pred HHHHHHhcCChhHHHHHHHH-HHH-------cCCCCCHHHHH--------------HHHHHHHccCCHHHHHHHHHhchh
Q 041822 253 RIDGYCKKGCFGDAMRLFEE-MER-------VACLPSLQTIT--------------TLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~-m~~-------~~~~~~~~~~~--------------~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
|..+|...||... ++..++ |.. .|+..-...+- ..+.-..-.|-++.+++++..+..
T Consensus 89 Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 7777777777654 222222 211 11110011110 111112233444444444444332
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 041822 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390 (500)
Q Consensus 311 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 390 (500)
.... .+... .++-+... ....+++....+...-.|+..+|.+++..-...|+.+.|..++.+|++.|+..+.+-|
T Consensus 168 sa~~-~p~~v--fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 168 SAWN-APFQV--FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccc-chHHH--HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 2110 00000 12222111 1222233322222111366677777777666677777777777777777766666666
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGR 437 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 437 (500)
..|+.+ .++...++.++..|.+.|+.|+..|+...+..+.++|.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 666544 56666666666677777777777776665555555433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-12 Score=80.31 Aligned_cols=50 Identities=38% Similarity=0.705 Sum_probs=39.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 210 PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888877764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.3e-09 Score=89.46 Aligned_cols=375 Identities=12% Similarity=0.123 Sum_probs=222.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC-------------CC
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH-------------PS 135 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~ 135 (500)
+..-+..++..-|++++|+..+..+.... .++......+....--.|.+.+|.++-+...+.. .+
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 33346677778899999999999888754 4555555555555555677777777665544310 00
Q ss_pred C-----------ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH-HHHHHcCCCHHHHHHHHHH
Q 041822 136 L-----------LTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL-LQAFCTQKEMKEARSVFVK 203 (500)
Q Consensus 136 ~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~ 203 (500)
. .+...-..+.+..-..-.+++|++++.++... .+.-...|.- .-+|.+..-++-+.++++-
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d------n~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD------NPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc------ChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 0 01111222333333445678888888877654 2333334433 3456677778888888888
Q ss_pred hhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------C------------CC-----CHHHHHH
Q 041822 204 LLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG--------------F------------RP-----SVVTYNI 252 (500)
Q Consensus 204 m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--------------~------------~~-----~~~~~~~ 252 (500)
-++.++.+....|.......+.=+-..|+.-..++.+.+ + -| -+..-..
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 777666666666665544443222122222222222211 0 00 0112234
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHhchhCCCCCCHh-hHHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG-----AGLVRNIHQARQLFDEMPKRNLKPDIG-AYNAMISS 326 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~ 326 (500)
|+-.|.+.|++.+|..+.+++... .|-......+..+ ......+.-|.+.|+..-+.+..-|.. --.++...
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 555677888999998887765432 2333333333222 112223667778887776666544433 23455666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHhh
Q 041822 327 LIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVV-MLMKFFCVNFRVDL 405 (500)
Q Consensus 327 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~ 405 (500)
+.-..++|+.+..++.+..--..-|...|| +.++++..|++.+|.++|-.+....++ |..+|. .|.++|.+.+..+.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 667778899988888887654444556655 788999999999999999777654444 344554 56667788899887
Q ss_pred HHHHHHHHHHCCCCCCHhH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041822 406 GLNLWGYLIDRGFCPHGHA-LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460 (500)
Q Consensus 406 a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 460 (500)
|++++ ++..-+.+..+ ...+..-|.+.+.+--|-+.|+++... .|++..|
T Consensus 447 AW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 447 AWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 76655 44332333333 334456788889888888888888743 4555444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-08 Score=94.54 Aligned_cols=297 Identities=16% Similarity=0.165 Sum_probs=176.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
..-....++...|++++|++.++.-... ..............+.+.|+.++|..+++.+.+. .|.+..-|..+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----NPdn~~Yy~~L 78 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----NPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHH
Confidence 3444556667888888888888664432 4444555566777788888888888888888877 35555566666
Q ss_pred HHHHHcC-----CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 185 LQAFCTQ-----KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV-TAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 185 l~~~~~~-----~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..+..-. .+.+...++|+++.+.. |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|.
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~ 154 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYK 154 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHc
Confidence 6665222 24666777777776654 4444443333333332233 3556666667777754 35566656666
Q ss_pred hcCChhHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCC-HhhHH
Q 041822 259 KKGCFGDAMRLFEEMERV----A----------CLPSLQ--TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPD-IGAYN 321 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~----~----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 321 (500)
...+..-..+++...... + -+|+.. ++..+...|...|++++|++++++..+. .|+ +..|.
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~ 232 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYM 232 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 555544455555554322 1 123332 3344455566777777777777777665 233 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH--------HHHH
Q 041822 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT--------VVML 393 (500)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--------~~~l 393 (500)
.-...|-+.|++.+|.+.++........ |...-+-.+..+.+.|++++|.+++......+..|-... ....
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 6666777777777777777777666444 555555666666777777777777766665543332111 1233
Q ss_pred HHHHHHcCCHhhHHHHHHHHHH
Q 041822 394 MKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~~~~ 415 (500)
..+|.+.|++..|+.-|....+
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4456666777777666666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.2e-07 Score=84.55 Aligned_cols=373 Identities=11% Similarity=0.054 Sum_probs=189.2
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+.+-|.++.-++....++++|++.|..++... +-|...+.-+.-.-+..|+++.....-....+..|. ....|..
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~--~ra~w~~ 148 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS--QRASWIG 148 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--hHHHHHH
Confidence 344445555555555555666666665555532 333444444444444455555555554444444332 2234444
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH------HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL------QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL 218 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l 218 (500)
...++--.|+...|..++++..+... ..++...|.... ....+.|..+.|.+.+..-...+......-..-
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~k 225 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhH
Confidence 44445555566666666555554421 123333332221 223444555555554444433222223333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRID-GYCKKGCFGDAM-RLFEEMERVACLPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~-~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 296 (500)
...+.+.+++++|..++..++.+ .||..-|...+. ++.+-.+..++. .+|....+.- +.....-..=+.......
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEE 302 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcch
Confidence 44555556666666666665555 344444433322 232222222222 3333333211 000000000011111111
Q ss_pred CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCHHHH--HHHHH
Q 041822 297 NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK----R----------IGHDNVTY--HTMFF 360 (500)
Q Consensus 297 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~----------~~~~~~~~--~~li~ 360 (500)
-.+....++..+.+.|+++ ++..+...|-.-...+-..++...+... | -.|....| ..++.
T Consensus 303 l~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred hHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 2334444555566666543 3444444443322222222222222211 1 13454444 45678
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHH
Q 041822 361 GLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWE 439 (500)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 439 (500)
.+-..|+++.|..+++..+.+ .|+ ..-|..=.+.+.+.|+++.|..++++..+.+ .+|...-.--..-..+.++.+
T Consensus 380 h~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence 888999999999999998865 666 4455555677888999999999999998876 456555445666677889999
Q ss_pred HHHHHHHHHHHcCC
Q 041822 440 EAFECSKQMLVRRR 453 (500)
Q Consensus 440 ~A~~~~~~m~~~~~ 453 (500)
+|.++.....+.|.
T Consensus 457 eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhhhccc
Confidence 99999888877764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-07 Score=86.00 Aligned_cols=414 Identities=10% Similarity=-0.006 Sum_probs=254.8
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
..+.+|..|.-.+...|++..+.+.|+..... .--..+.|..+...+..+|.-..|..+++.-....+...+...+..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 46677777777778888888888888887763 3445667888888888888888888888887766533434444444
Q ss_pred HHHHH-hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC-----------CCHHHHHHHHHHhhhCCCCCH
Q 041822 145 MLSRI-SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ-----------KEMKEARSVFVKLLSRFAPNN 212 (500)
Q Consensus 145 l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~A~~~~~~m~~~~~~~~ 212 (500)
....| .+.+.++++++.-.+................|..+.-+|... ....++++.+++..+..+.|.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 44433 345667777776666655210000123344555555555322 124567777777776444455
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV-ACLPSLQTITTLIHG 291 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~ 291 (500)
.+...+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |. |-.....-+..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhh
Confidence 5555555566777888888888888888765667888888888888888888888888776542 21 11111111111
Q ss_pred HHccCCHHHHHHHHHhchhC---------------------CC-------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 292 AGLVRNIHQARQLFDEMPKR---------------------NL-------KPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 292 ~~~~~~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
-...++.+++......+..- |. .-...++..+..-... +.+.+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-c
Confidence 11234444433332222110 00 0011122222111110 0000000000 1
Q ss_pred HHCCC--CCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH
Q 041822 344 EEKRI--GHD------NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 344 ~~~~~--~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 415 (500)
..... .|+ ...|......+.+.++.++|...+.+..... .-....|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11111 122 2345566677888889999988887776542 33355566666677788999999999998887
Q ss_pred CCCCCCHhHHHHHHHHHhcCCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 416 RGFCPHGHALDLLVTGLCSRGRWEEAFE--CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 416 ~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
.+ +-++....++..++.+.|+..-|.. ++.++.+.+. -+...|-.+...+.+.|+.+.|.+.++..-+...
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 54 2245677888999999998887777 8888886653 3567788899999999999999999988877765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-07 Score=85.33 Aligned_cols=395 Identities=14% Similarity=0.107 Sum_probs=217.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR 148 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (500)
.+..++..| ..+++...+++.+.+++. ++--.++.....-.+...|+-++|........+. +..+...|..+.-.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHH
Confidence 344444433 455667777777776663 3444455555555566667777777766666553 33444556666555
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+....++++|++.|+..... .+.|...|.-+--.-.+.|+++.....-....+-.+.....|..+..++.-.|+.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~-----~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI-----EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 66666777777777766554 3555555555555555556666665555555554444555566666666666666
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHH
Q 041822 229 TAMEMFYHEMVLRG-FRPSVVTYNIRI------DGYCKKGCFGDAMRLFEEMERVACLPSLQT-ITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 229 ~~a~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~ 300 (500)
..|..++++..+.. -.|+...+.-.. ....+.|..++|.+.+..-...- .|-.. -.+-...+.+.+++++
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHh
Confidence 66666666665542 234444432221 22334555555555554433221 12211 1223334555566666
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHH-HHHHhcCCHHHHH-HHH----------------------------------HHHH
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMI-SSLIRCRDLNAAM-ELM----------------------------------DEME 344 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~-~~~----------------------------------~~~~ 344 (500)
|..++..+... .||...|.... .++.+..+.-++. .+| ..+.
T Consensus 238 A~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 238 AVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 66666666554 23433333322 2222222222222 333 3333
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--------hCC----------CCCCH--HHHHHHHHHHHHcCCHh
Q 041822 345 EKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI--------EGK----------FVPKT--RTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~----------~~p~~--~~~~~ll~~~~~~~~~~ 404 (500)
+.|+.+ ++..+..-|-. ..++- +++++. ..| -.|.. .++..++..+-+.|+++
T Consensus 316 ~Kg~p~---vf~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred hcCCCc---hhhhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 333322 12222222211 11111 222221 111 13443 34456677778889999
Q ss_pred hHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 405 LGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 405 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
.|...++..+++ .|+ +..|..=.+.+...|..++|..++++..+.+. +|...-..-.....++.+.++|.++...+
T Consensus 389 ~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 389 VALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 999999999885 355 34565566788889999999999999986543 55555556778888899999999888777
Q ss_pred HHhh
Q 041822 484 KNLQ 487 (500)
Q Consensus 484 ~~~~ 487 (500)
.+.+
T Consensus 466 Tr~~ 469 (700)
T KOG1156|consen 466 TREG 469 (700)
T ss_pred hhcc
Confidence 6554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-08 Score=94.78 Aligned_cols=237 Identities=14% Similarity=0.058 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHhchhC-----C--C
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERV-----A-CLPSLQT-ITTLIHGAGLVRNIHQARQLFDEMPKR-----N--L 313 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~ 313 (500)
.+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666677777777777776665543 1 1122222 223555666777777777777766542 1 1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhC---CC
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK-----RIG-HDN-VTYHTMFFGLMKSSGLEGVCKLYDRMIEG---KF 383 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~ 383 (500)
+.-..+++.|..+|.+.|++++|...++...+. |.. |.+ ..++.+...+...+++++|..++....+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112345666677777778777777766654321 111 122 23455566677778888887777765421 11
Q ss_pred CCC----HHHHHHHHHHHHHcCCHhhHHHHHHHHHHC----CCC--C-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Q 041822 384 VPK----TRTVVMLMKFFCVNFRVDLGLNLWGYLIDR----GFC--P-HGHALDLLVTGLCSRGRWEEAFECSKQMLV-- 450 (500)
Q Consensus 384 ~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 450 (500)
.++ ..+++.+...|...|++++|.++++.++.. +.. + ....++.+...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 456777788888888888888888777642 111 1 134566777778888888888877776543
Q ss_pred --cCC-CCC-HHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 041822 451 --RRR-QVS-EASYRMLQRYLVQANANEKLEDLDRMIK 484 (500)
Q Consensus 451 --~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 484 (500)
.|. .|+ ..+|.-|...|...|++|.|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 122 3456777888888888888888776665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-08 Score=91.91 Aligned_cols=282 Identities=11% Similarity=0.073 Sum_probs=211.3
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+......-...+-..+++.+..++++.+.+. .|+....+-.-|.++...|+..+-.-+=.++++..|-...+|-+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 4445666667777888899999998888877 57888888888888888888888888888888888888889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHc
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV--AC-LPSLQTITTLIHGAGL 294 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-~~~~~~~~~ll~~~~~ 294 (500)
+.-.|.-.|+..+|++.|.+.....-. =...|-.+...|+-.|..++|+..+...-+. |. .|. .| +.--|.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~ 392 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMR 392 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHH
Confidence 988888889999999998887655211 2456888888888889999998888776552 21 121 12 2234677
Q ss_pred cCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHHcCCh
Q 041822 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK----RIG--HDNVTYHTMFFGLMKSSGL 368 (500)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~ 368 (500)
.++.+.|.++|.+..... +.|+.+.+-+.-.....+.+.+|..+|+..... +.+ .-..+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888999999998887763 457778888877777888888998888876522 111 1345677788888999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 041822 369 EGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC 433 (500)
Q Consensus 369 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 433 (500)
++|+..+++..... +-+..++.++.-.+...|+++.|.+.|.+.+- +.|+..+-..++..+.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999998887653 44677888888888888999999999888776 4577666556655443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-09 Score=99.00 Aligned_cols=239 Identities=14% Similarity=0.142 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhh-----CCCCcc-HHHHHHHHHHHhccccHHHHHHHHHHHHHH--Hhccc-cCC
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRT-----HPSLLT-LKSMSIMLSRISKFQSYEETLEAFDRMERE--IFVGI-RKF 176 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~-~~~ 176 (500)
...+...|...|+++.|..++++..+. +-..+. ....+.+...|...+++++|..+|+++... ...|. .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333555555555555555555554443 001111 112223444555555555555555554321 11111 222
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---C----CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLS---R----FAPNN-KTMNILLLGFKESGDVTAMEMFYHEMVLR---GFRP 245 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~----~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~ 245 (500)
-..+++.|..+|.+.|++++|...++...+ . ..|.+ ..++.+...+...++++.|..++....+. -+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 334555566666666666555555555442 1 11222 22444555555666666666665544332 1111
Q ss_pred ----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh----
Q 041822 246 ----SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA-------CLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK---- 310 (500)
Q Consensus 246 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---- 310 (500)
-..+++.|...|.+.|++++|.+++++..+.. ..-....++.|...|.+.++++.|.++|.+...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 13456666677777777777777766654321 111233455566666666666666666554322
Q ss_pred CC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 311 RN--LKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 311 ~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
.| .+-...+|..|...|...|++++|.++.+.+.
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 12234567777777777777777777766554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-08 Score=83.67 Aligned_cols=197 Identities=14% Similarity=0.053 Sum_probs=136.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
-|.-.|...|++..|..-++++++.+ |-+..++..+...|.+.|..+.|.+.|+...+..|+.- .++|.....+|.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~FLC~ 115 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHHHHh
Confidence 44455677788888888888877764 45566777777777788888888888887777765533 356666666777
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
.|++++|...|++....-. .+.-..+|..+.-+..+.|+++.|.+.|++.++..+....+.-.+.....+.|++..|
T Consensus 116 qg~~~eA~q~F~~Al~~P~---Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPA---YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCC---CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 7777777777777665422 3344556777777777777777777777777765566666677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 232 EMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 232 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
..+++.....|. ++..+.-..|+.-...|+.+.+-++=.++.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777766654 66666666677666777777766665555543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-08 Score=90.73 Aligned_cols=88 Identities=10% Similarity=-0.043 Sum_probs=38.4
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.|...|+.++|...|++..+. .|.+..+|+.+...+...|++++|...|++..+-.+.+..+|..+..++...|+
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALAL-----RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 344444444444444444333 233344444444444444444444444444443323334444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 041822 228 VTAMEMFYHEMVL 240 (500)
Q Consensus 228 ~~~a~~~~~~~~~ 240 (500)
+++|.+.++...+
T Consensus 148 ~~eA~~~~~~al~ 160 (296)
T PRK11189 148 YELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-08 Score=81.93 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=166.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
+...+.-.|...|+...|..-+++..+..|+ ...++..+...|.+.|+.+.|.+.|++.... .|.+..+.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSL-----APNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----CCCccchhhhh
Confidence 4556777888999999999999999998766 5567888888899999999999999998877 57788899999
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS--RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
...+|..|++++|...|++... .+..-..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 9999999999999999999886 456667889999999999999999999999988773 2245567778888899999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+..|...++.....+. ++..+.-..|+.-...|+-+.+.++=.++.+.
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999888775 78888888888888889988888776666654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-06 Score=81.37 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHhchhCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcC
Q 041822 296 RNIHQARQLFDEMPKRNLKPD------IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD---NVTYHTMFFGLMKSS 366 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 366 (500)
|+..+-...|.+..+. +.|. ...|..+...|-+.|+++.|..+|++..+...+-- ..+|..-...=.++.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4455555555555443 1221 23577788888888999999999988776533211 233444444445667
Q ss_pred ChhHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCC
Q 041822 367 GLEGVCKLYDRMIEGKFV----------P-------KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417 (500)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 417 (500)
+++.|++++++.....-. | +...|...+..--..|-++....+++.+++..
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 788888877766431111 1 11223333333344466666667777666644
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-06 Score=76.69 Aligned_cols=269 Identities=11% Similarity=0.060 Sum_probs=148.7
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIR 253 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 253 (500)
.+-|+.....+.+.+...|+.++|+..|++...-.+-+........-.+.+.|+.+....+...+.... +-+...|-.-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 355566666666666666666666666666654222222222222333345566665555555554331 1123333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCH
Q 041822 254 IDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333 (500)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 333 (500)
.......++++.|+.+-++..+.+ +-+...|-.-...+...++.++|.-.|+..+... +.+...|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 334445566666666666666543 1223333333445566677777777776665542 23566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHH
Q 041822 334 NAAMELMDEMEEKRIGHDNVTYHTMF-FGLM-KSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLW 410 (500)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 410 (500)
.+|.-+-++..+. ...+..+.+.+. ..+. .-..-++|.+++++... +.|+ ....+.+...|...|..+.+..++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7766555443332 111333333221 1111 11234566666666543 3555 445556666667777777777777
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 411 GYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
+..+.. .||....+.|.+.+...+.+++|++.|.....
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 776663 46666777777777777777777777776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-07 Score=81.89 Aligned_cols=289 Identities=12% Similarity=0.029 Sum_probs=211.4
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETL 159 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (500)
.++...|...+-.+....-++-|......+.+.+...|+..+|+..|+.....+|...+ ......-.+.+.|++++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~--~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE--AMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh--hHHHHHHHHHhccCHhhHH
Confidence 34444455444444444356778888999999999999999999999999887665433 3333444466788888887
Q ss_pred HHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 160 EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
.+...+-.. .+.....|..-+......++++.|+.+-++..+-.+.+...|-.-...+...++.++|.-.|...+
T Consensus 287 ~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 287 ALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 777766544 344566677777777888899999998888886555677777777778888999999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHc-cCCHHHHHHHHHhchhCCCCCC-
Q 041822 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLI-HGAGL-VRNIHQARQLFDEMPKRNLKPD- 316 (500)
Q Consensus 240 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~~- 316 (500)
... +-+..+|..|+.+|...|++.+|.-+-+...+. .+-+..+.+.+. ..|.- ..--++|.++++.-.+. .|+
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 652 247889999999999999999988766554332 123444544442 22222 22357888888887775 333
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 317 IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
....+.+...+...|+.++++.+++..... .||....+.|.+.+...+.+.+|++.|......
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445677778888899999999999887654 578889999999999999999999999887764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.1e-07 Score=77.66 Aligned_cols=381 Identities=10% Similarity=-0.003 Sum_probs=199.6
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
+....++..|+.+++...... -.....+-.-+...+-+.|++++|...++-+... +..+...+..+..++--.|.+.
T Consensus 32 fls~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHH
Confidence 345678999999998877542 1222223334455567889999999999998874 2334445555666666678899
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
+|..+-.+. +.++-.-..+.....+.++-++-..+...+.+ ...---+|.......-.+.+|..+|.
T Consensus 109 eA~~~~~ka---------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 109 EAKSIAEKA---------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHhhC---------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 988775543 33333444555555666776666665555543 12222333444444445778888888
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CCH---------------
Q 041822 237 EMVLRGFRPSVVTYNIRID-GYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV--RNI--------------- 298 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~--------------- 298 (500)
..... .|+-...|..+. +|.+..-++-+.+++.-..+.- +-++...|.......+. |+.
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 77766 345555555443 4556666777777776655532 22233333332222221 111
Q ss_pred ------------------HHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--
Q 041822 299 ------------------HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTM-- 358 (500)
Q Consensus 299 ------------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 358 (500)
+.|++++-.+.+. - +..-..|+--|.+.+++.+|..+.+++.-. .|-......+
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHH
Confidence 1111111111110 0 112234555677788888888776654321 1111111111
Q ss_pred ---------------------------------------HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 041822 359 ---------------------------------------FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV 399 (500)
Q Consensus 359 ---------------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 399 (500)
...+.-..++++++-.+..+..--..-|...| .+.++.+.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence 11111222233333333333322111122222 35566667
Q ss_pred cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCchhHHHH
Q 041822 400 NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY-RMLQRYLVQANANEKLED 478 (500)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 478 (500)
.|++.+|+++|-.+....++.+..-...+.++|.+.+..+.|.+++-++ +-..+..+. ..+..-|.+++.+=-+.+
T Consensus 406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766655444433333344556777777777777665554 222222222 344566666666666666
Q ss_pred HHHHHHHh
Q 041822 479 LDRMIKNL 486 (500)
Q Consensus 479 ~~~~~~~~ 486 (500)
.+.+++..
T Consensus 483 AFd~lE~l 490 (557)
T KOG3785|consen 483 AFDELEIL 490 (557)
T ss_pred hhhHHHcc
Confidence 66666655
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-07 Score=85.23 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=8.5
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 041822 361 GLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~ 379 (500)
++...|+.++|..+++.+.
T Consensus 273 ~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 273 ALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HHhcCCCHHHHHHHHHHHH
Confidence 3344444444444444443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-08 Score=87.58 Aligned_cols=222 Identities=11% Similarity=0.005 Sum_probs=150.3
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
.++.+.++..+.++....... .......|..+...+...|++++|...|++..+..+.+...|+.+...+...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~-~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLT-DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCC-cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345666666666666432100 1112456888888899999999999999999887777889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 232 EMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 232 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
...|+...+.. +-+..+|..+..++...|++++|++.|++..+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998763 2246777888888889999999999999988765 44332222222344567899999998765543
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 041822 312 NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK---RIG---HDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 312 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 382 (500)
. .++... ..+ .....|+.+.+ +.+..+.+. .+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 222222 222 22335555444 344444422 110 123467778888888888888888888888654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-06 Score=79.00 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC-----CCCccHHHHH
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH-----PSLLTLKSMS 143 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 143 (500)
+|...++....++-|+.++.++++.++- ++..-...+..+++.+++++|.+.+..+.... ....+...|.
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 3444444444444555555555554432 22334444555555555555555555444311 0111233333
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG--SEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
.+-...+++.+.-.-+.+ +.+.+.|.. .-+| ...|++|.+-|.+.|.+++|.++|++...
T Consensus 215 elcdlis~~p~~~~slnv-daiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNV-DAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHHhCcchhcccCH-HHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333333333333332222 222222211 1112 12477778888888888888888887765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-07 Score=85.70 Aligned_cols=302 Identities=9% Similarity=-0.011 Sum_probs=169.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh---hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE---EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
.+..+...+...|+.+.+.+.+.+..+.. +.+.. ........+...|++++|.+.+++..+..|.|...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-----AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 33444455556677777766666665543 22222 22233445567788888888888888765656655553
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 218 LLLGFKE----SGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 218 l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 292 (500)
...+.. .+..+.+.+.+.. ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 222222 3444445544443 1122333 3344455567778888888888888888765 34456677777888
Q ss_pred HccCCHHHHHHHHHhchhCCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHc
Q 041822 293 GLVRNIHQARQLFDEMPKRNL-KPDI--GAYNAMISSLIRCRDLNAAMELMDEMEEKRI-GHDNVTY-H--TMFFGLMKS 365 (500)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~ 365 (500)
...|++++|...+++..+... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 888888888888888776532 1222 2355677778888888888888888754322 1111111 1 222333334
Q ss_pred CChhHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCC---C-----CHhHHHHHHHHHh
Q 041822 366 SGLEGVCKL--YDRMIEGKF--VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC---P-----HGHALDLLVTGLC 433 (500)
Q Consensus 366 g~~~~a~~~--~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~-----~~~~~~~li~~~~ 433 (500)
|....+.+. +........ ......-.....++...|+.+.|..+++.+...... - .....-....++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 433333222 111111100 111122224556667778888888888887653211 0 1111222233456
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 041822 434 SRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~ 451 (500)
..|++++|.+.+.+....
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 788888888888777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-08 Score=90.36 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=138.0
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
.-.|++..|.+.|+.++..+ +.+...|..+..+|....+.++.++.|......+|..++ +|..-...+.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHH
Confidence 34677777888888777753 223333777777778888888888888887777666554 34444444555677777
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
|..-|++.... .|.+...|.-+.-+..+.+++++++..|++.++++|.-+..|+.....+...++++.|.+.|+.
T Consensus 413 A~aDF~Kai~L-----~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 413 AIADFQKAISL-----DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHhhc-----ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 87777777655 4556666777777777777788888888888777777777888888888888888888887777
Q ss_pred HHHCCCC-----CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhch
Q 041822 238 MVLRGFR-----PS--VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 238 ~~~~g~~-----~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
.++.... .+ ..+..+++-.- -.+++..|.+++++..+.+ +-....|.+|...-.+.|++++|+++|++..
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7654111 11 11111111111 1255555666665555543 1233445555555555555555555555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-06 Score=79.29 Aligned_cols=385 Identities=11% Similarity=0.087 Sum_probs=194.1
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHH-HHHHHHHhcccc
Q 041822 76 LFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM-SIMLSRISKFQS 154 (500)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 154 (500)
.+...+++++|++...+++.. .+-+...+..-+-++...++|++|..+.+.-... .....+ ..-.-+..+.+.
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh----hhcchhhHHHHHHHHHccc
Confidence 345677888888888888764 3556666777777777888888888665543321 111111 112223446778
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH----------------------
Q 041822 155 YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN---------------------- 212 (500)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---------------------- 212 (500)
.++|+..++-. .+.+..+...-...+.+.|++++|.++|+.+.++..++.
T Consensus 95 ~Dealk~~~~~--------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGL--------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHHHHHHHhcc--------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 88888877732 233444555556667778888888888877754322111
Q ss_pred ------HhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHH-------HHHHHHHHHHhcCChhHHHHH
Q 041822 213 ------KTMNIL---LLGFKESGDVTAMEMFYHEMVLRGF-------RPSVV-------TYNIRIDGYCKKGCFGDAMRL 269 (500)
Q Consensus 213 ------~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~g~-------~~~~~-------~~~~li~~~~~~g~~~~a~~~ 269 (500)
.+|..+ ...+...|++..|+++++...+.|. .-+.. .-.-|..++-..|+.++|.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 122222 2334455666666666665522210 00000 111233344455666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH---HHccCC-HH-HHHHHHHhch-----------------------------------
Q 041822 270 FEEMERVACLPSLQTITTLIHG---AGLVRN-IH-QARQLFDEMP----------------------------------- 309 (500)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~---~~~~~~-~~-~a~~~~~~~~----------------------------------- 309 (500)
+....+.. .+|........+- ...-.+ ++ .++..++...
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66666554 2333211111111 111000 00 0000000000
Q ss_pred ------h-CCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH----
Q 041822 310 ------K-RNLKPDIGAYNAMISSLIRC--RDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYD---- 376 (500)
Q Consensus 310 ------~-~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~---- 376 (500)
. .+..| ...+.+++....+. ....++.+++...-+....-.....-+++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 0 00011 11222222222211 1244455555554444332223444455666777888888888887
Q ss_pred ----HHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC--CCCCCHhH----HHHHHHHHhcCCCHHHHHHHHH
Q 041822 377 ----RMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR--GFCPHGHA----LDLLVTGLCSRGRWEEAFECSK 446 (500)
Q Consensus 377 ----~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~ 446 (500)
.+.+.+..| .+...+...+.+.++-+.|..++...+.. .-.+.... +.-+...-.+.|+.++|..+++
T Consensus 405 ~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 405 SWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 444444444 33444555666777766777777766641 11111122 2223333345688888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHH
Q 041822 447 QMLVRRRQVSEASYRMLQRYLVQANANEKLEDLD 480 (500)
Q Consensus 447 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 480 (500)
++.+.. .+|..+...++.+|.+. +.+.+..+-
T Consensus 483 el~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 483 ELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 888643 35677777777777654 344444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-07 Score=82.87 Aligned_cols=367 Identities=13% Similarity=0.065 Sum_probs=211.6
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 76 LFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
.....|+++.|+..|..++..+ |+|...|..-..++++.|++++|.+=-.+..+..|+... .|.....++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k--gy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK--GYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh--HHHHhHHHHHhcccH
Confidence 4456899999999999998864 668888999999999999999999888888887776553 677888888889999
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHH------HHhhh----CCCCCHHhHHHHHHHHHhc
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVF------VKLLS----RFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~------~~m~~----~~~~~~~~~~~l~~~~~~~ 225 (500)
++|+..|.+-.+. .+.+...++-+..++..... +.+.| ..... +.......|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~-----d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 87 EEAILAYSEGLEK-----DPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred HHHHHHHHHHhhc-----CCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 9999999887665 35566666666666511100 01111 00000 0001112222222222111
Q ss_pred C-------CHHHHHHHHHHHHH--------CCC-------CC----------------------CHHHHHHHHHHHHhcC
Q 041822 226 G-------DVTAMEMFYHEMVL--------RGF-------RP----------------------SVVTYNIRIDGYCKKG 261 (500)
Q Consensus 226 ~-------~~~~a~~~~~~~~~--------~g~-------~~----------------------~~~~~~~li~~~~~~g 261 (500)
. +.+...+....+.. .|. .| -..-...+.++..+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 0 00111111111100 000 01 0111344556666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC--C----HhhHHHHHHHHHhcCCHHH
Q 041822 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP--D----IGAYNAMISSLIRCRDLNA 335 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~ 335 (500)
+++.|++.+....... -+..-++....+|...|.+..+...-....+.|... + ...+..+..+|.+.++++.
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 6666666666665543 233334444455666665555554444444433211 0 1122223445555566666
Q ss_pred HHHHHHHHHHCCCCCCHHH-------------------------HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 041822 336 AMELMDEMEEKRIGHDNVT-------------------------YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390 (500)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 390 (500)
|+..|.+....-..|+... ...-...+.+.|++..|++.|.+++... +-|...|
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 6666655433322222111 0111345667889999999999988764 4457888
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 460 (500)
..-.-+|.+.|.+..|+.=.+..++.. ++....|.-=..++....++++|.+.|.+..+.. |+..-+
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~ 462 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEA 462 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHH
Confidence 888888888899888888777777753 2233445444555666678888888888887543 555444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-07 Score=78.38 Aligned_cols=289 Identities=12% Similarity=0.110 Sum_probs=168.0
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
.+..+.+..++..|++++..-.++. +.+...+..+..+|-+..++..|-+.++++....|....+..|. ...+-+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~--AQSLY~A 91 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ--AQSLYKA 91 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH--HHHHHHh
Confidence 3444566778888888887776653 33666777777888888888888888888888766554444432 3345577
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
+.+.+|+++...|.+.. ..-..+...-.......+++..+..+.++... + +..+.+.......+.|+++.|
T Consensus 92 ~i~ADALrV~~~~~D~~-----~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNP-----ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred cccHHHHHHHHHhcCCH-----HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 88888888887775321 00011111111223456777778877777763 3 555666666666788888888
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-------------CCHH--------------
Q 041822 232 EMFYHEMVLR-GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL-------------PSLQ-------------- 283 (500)
Q Consensus 232 ~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------~~~~-------------- 283 (500)
.+-|+...+. |.. ....||..+. +.+.|+++.|+++..++.++|++ ||+.
T Consensus 164 vqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 8888887776 454 4566775544 44678888888888888887742 1111
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHhchhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 284 -TITTLIHGAGLVRNIHQARQLFDEMPKRN-LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFG 361 (500)
Q Consensus 284 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 361 (500)
.+|.-...+.+.|+++.|.+.+-.|.-+. ...|++|...+.-.-. .+++.+..+-+.-+.+.++- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 11111122345556666666665554322 2344555544332211 12333333333333333332 33455555556
Q ss_pred HHHcCChhHHHHHHHH
Q 041822 362 LMKSSGLEGVCKLYDR 377 (500)
Q Consensus 362 ~~~~g~~~~a~~~~~~ 377 (500)
||++.-++-|-+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 6666656655555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-05 Score=75.22 Aligned_cols=391 Identities=13% Similarity=0.008 Sum_probs=238.7
Q ss_pred HhhcCChHHHHHH----HHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 77 FAAHSNGLKALEF----FKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 77 ~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
++...+.+++.-. +.++... .+..++..|..+.-++.+.|+++.+.+.|++...- .......|..+...|...
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~-~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saa 370 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLK-KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAA 370 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHh
Confidence 4444455555433 2333332 35678999999999999999999999999998763 223456788888889999
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc-CCCHHHHHHHHHHhhh--C---CCCCHHhHHHHHHHHHhc-
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT-QKEMKEARSVFVKLLS--R---FAPNNKTMNILLLGFKES- 225 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~m~~--~---~~~~~~~~~~l~~~~~~~- 225 (500)
|.-..|..+++.-..... .+.+...+-..-+.|.+ .+..++++++-.+..+ + -.-....|..+.-+|...
T Consensus 371 g~~s~Av~ll~~~~~~~~---~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A 447 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSE---QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA 447 (799)
T ss_pred ccchHHHHHHHhhccccc---CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh
Confidence 999999999887654420 14445555555555554 4667777776666654 1 112333444444444321
Q ss_pred ---C-------CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 041822 226 ---G-------DVTAMEMFYHEMVLRG-FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL 294 (500)
Q Consensus 226 ---~-------~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 294 (500)
. ...++.+.+++.++.+ -.|+...| +.--|+..++.+.|++..++..+.+-.-+...|..+.-.+..
T Consensus 448 ~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa 525 (799)
T KOG4162|consen 448 RQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA 525 (799)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 1 1246778888887774 33444433 334566788999999999999987656788899999999999
Q ss_pred cCCHHHHHHHHHhchhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CC----
Q 041822 295 VRNIHQARQLFDEMPKR-NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK---------------------RI---- 348 (500)
Q Consensus 295 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------~~---- 348 (500)
.+++.+|+.+.+...+. |. |-.....-+..-...++.+++......+... |.
T Consensus 526 ~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 526 QKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred hhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCc
Confidence 99999999998876553 21 1111111111122244555544443322110 00
Q ss_pred ---CCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHHcCCHhhHHHHHHHHH
Q 041822 349 ---GHDNVTYHTMFFGLMKSS---GLEGVCKLYDRMIEGKFVP--K------TRTVVMLMKFFCVNFRVDLGLNLWGYLI 414 (500)
Q Consensus 349 ---~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 414 (500)
.-...++..+..-....+ ..+.. +....+.| + ...+......+.+.+..++|...+.+..
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 001122222221111110 11111 22222222 2 2234455566778899999988888887
Q ss_pred HCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHH--HHHHHHHh
Q 041822 415 DRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLED--LDRMIKNL 486 (500)
Q Consensus 415 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~ 486 (500)
+.. .-....|......+...|.+++|.+.|..... +.|+ ......+..++...|+...+.. +...+-+.
T Consensus 678 ~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 678 KID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred hcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 753 34566777777888899999999999999885 3454 3455788889999997776666 44444333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.6e-06 Score=87.98 Aligned_cols=341 Identities=11% Similarity=-0.014 Sum_probs=213.5
Q ss_pred HHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccc--cCC--ChhhHHHHHH
Q 041822 111 HILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGI--RKF--GSEEFNVLLQ 186 (500)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~--~~~~~~~ll~ 186 (500)
..+...|+++.+..+++.+...... .+..........+...|++++|...++.......... ..+ .......+..
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~-~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLL-ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHh-cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3445667888877777766432100 0111223334445677999999999887754311000 001 1122233345
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCC-C----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAP-N----NKTMNILLLGFKESGDVTAMEMFYHEMVLR----GF-RPSVVTYNIRIDG 256 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~ 256 (500)
.+...|++++|...+++..+..+. + ....+.+...+...|+++.|...+++.... |- .....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 567899999999999998753222 1 134566667778899999999998887653 21 1112344556677
Q ss_pred HHhcCChhHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCC--CCC--CHhhHHHHHH
Q 041822 257 YCKKGCFGDAMRLFEEMER----VACL--P-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRN--LKP--DIGAYNAMIS 325 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~ 325 (500)
+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8889999999999888654 2211 1 22334455566777899999999988775531 111 2334555667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHH
Q 041822 326 SLIRCRDLNAAMELMDEMEEKRIGH-DNVTY-----HTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKT---RTVVMLMKF 396 (500)
Q Consensus 326 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~ 396 (500)
.+...|+.++|.+.++......... ....+ ...+..+...|+.+.|.+.+............ .....+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7888999999999998875421100 11111 11224455688999999998775542211111 113456667
Q ss_pred HHHcCCHhhHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 041822 397 FCVNFRVDLGLNLWGYLIDR----GFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVRR 452 (500)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 452 (500)
+...|+.++|...+++.... |...+ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 78889999999999988753 33322 2456667788899999999999999998753
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-05 Score=77.96 Aligned_cols=315 Identities=13% Similarity=0.124 Sum_probs=176.4
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCC-CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHP-HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
+-..++-..+-+.+-++++++..-.+ .|.-+...-+.++-...+. +..+..+..+++..- +.+ .+.....
T Consensus 989 ~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny--Da~------~ia~iai 1059 (1666)
T KOG0985|consen 989 VTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY--DAP------DIAEIAI 1059 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC--Cch------hHHHHHh
Confidence 34455666778888888888876542 2333333344444444444 344555555544321 111 1233345
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
..+-+++|..+|++.. .+..+.+.|+.- -+..+.|.+.-++.- ....|..+.++-.+.|.+.+
T Consensus 1060 ~~~LyEEAF~ifkkf~---------~n~~A~~VLie~---i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD---------MNVSAIQVLIEN---IGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred hhhHHHHHHHHHHHhc---------ccHHHHHHHHHH---hhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchHH
Confidence 6677788888877652 233344444432 345566665554443 45667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
|.+-|- +. -|+..|..+++...+.|.|++-.+.+...++..-+|... +.++-+|++.++..+..+++.
T Consensus 1123 AieSyi---ka---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1123 AIESYI---KA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred HHHHHH---hc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----
Confidence 665442 21 166677777777777777777777776666655444433 456667777777666555442
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 041822 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390 (500)
Q Consensus 311 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 390 (500)
.||......+.+-|...|.++.|.-+|. ++..|..|...+...|++..|.+.-++. .+..||
T Consensus 1191 ---gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1191 ---GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred ---CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 3566666666666777777777666664 4444566666666667766666554432 234555
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
..+..+|...+.+..| +|....+.....-...++.-|-..|-+++.+.+++.
T Consensus 1253 K~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5555555554443322 222222333333444555555555555555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-06 Score=72.02 Aligned_cols=290 Identities=16% Similarity=0.166 Sum_probs=125.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH-HH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN-VL 184 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l 184 (500)
+.+++..+.+-.++..|++++....+..|. +...+..+..+|-...++..|-+.++++... .|...-|. .-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL------HPELEQYRLYQ 84 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ChHHHHHHHHH
Confidence 444455555555555555555555444322 3334444555555555555555555555332 12222221 12
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL--GFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
...+.+.+.+.+|+++...|.+. ++...-..-+. .....+++..++.++++....| +..+.+.......+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 33344455555555555555431 11111111111 1223445555555555444322 33333333333445555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC-------------C-------------
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP-------------D------------- 316 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~------------- 316 (500)
++.|.+-|+...+-+---....|+..+. ..+.|+++.|++...++.++|++- |
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 5555555555554332223334444332 334455555555555555544321 1
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 041822 317 --IGAYNAMISSLIRCRDLNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393 (500)
Q Consensus 317 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 393 (500)
+..+|.-...+.+.|+.+.|.+.+.+|.-+ ....|++|...+.-.= -.+++.+..+-+.-+...+. -...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 012344444455555555555555555432 2223444443332111 12223333333332332221 224455555
Q ss_pred HHHHHHcCCHhhHHHHHH
Q 041822 394 MKFFCVNFRVDLGLNLWG 411 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~ 411 (500)
+-.||+..-++.|-.++.
T Consensus 317 LllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHhhhHHHhHHHHHHh
Confidence 555555555555554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-05 Score=85.90 Aligned_cols=336 Identities=9% Similarity=-0.010 Sum_probs=210.8
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-------CC--HHhHHHH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-------PN--NKTMNIL 218 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-------~~--~~~~~~l 218 (500)
.....|+++.+...++.+..... ..+..........+...|++++|...+....+... +. ......+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~----~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 458 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVL----LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALR 458 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHH----hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHH
Confidence 34456777777777776643321 12233334455566778999999999988764211 11 1222333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSV----VTYNIRIDGYCKKGCFGDAMRLFEEMERV----AC-LPSLQTITTLI 289 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll 289 (500)
...+...|+++.|...+++..+.-...+. ...+.+...+...|++++|...+++.... |- .....++..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 45566789999999999987763111121 23455666777899999999999887642 21 11123445566
Q ss_pred HHHHccCCHHHHHHHHHhchhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHH
Q 041822 290 HGAGLVRNIHQARQLFDEMPKR----NLK--P-DIGAYNAMISSLIRCRDLNAAMELMDEMEEK--RIGH--DNVTYHTM 358 (500)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l 358 (500)
..+...|+++.|...+++..+. +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 6788899999999988876542 211 1 2234455666777889999999998876543 1111 23344445
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC--CCCCCHH--H-H-HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC---HhHHHHHH
Q 041822 359 FFGLMKSSGLEGVCKLYDRMIEG--KFVPKTR--T-V-VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH---GHALDLLV 429 (500)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~--~-~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 429 (500)
...+...|++++|.+.+.+.... ....... . . ...+..+...|+.+.|...+........... ...+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 66778899999999998887532 1111111 1 1 1122334557899999888776554221111 11134567
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 430 TGLCSRGRWEEAFECSKQMLVR----RRQVS-EASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
.++...|++++|...+++.... |..++ ..+...+..++...|+.++|...+...-...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7888999999999999988653 33322 2345666788889999999888877665554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-06 Score=73.78 Aligned_cols=301 Identities=10% Similarity=0.038 Sum_probs=214.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 71 NVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 71 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
--|...+...|++..|+.-|+.+..- -|.+-.++-.....|...|+-..|+.=++.+.+..|+-.- +-..-...+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~--ARiQRg~vll 117 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA--ARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH--HHHHhchhhh
Confidence 34567778889999999999999874 2444556667778888999999999999999987765322 2223334578
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhh------------HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEE------------FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL 218 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l 218 (500)
+.|.+++|..-|+.+....... ...... ....+..+...|+...|+.....+++-.+-|...|..-
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~--~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN--GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc--chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 9999999999999988763210 011111 23345567778999999999999998778899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH----------
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTL---------- 288 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l---------- 288 (500)
..+|...|++..|..=+....+.. ..+...+--+-..+...|+.+.++...++..+.+ ||...+-..
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHH
Confidence 999999999999887666655543 3356666667778888999999999999998865 664432211
Q ss_pred ---HHHHHccCCHHHHHHHHHhchhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 289 ---IHGAGLVRNIHQARQLFDEMPKRNLKPD---IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGL 362 (500)
Q Consensus 289 ---l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 362 (500)
+......+++.++....+...+....-. ...+..+-.++...|++.+|+....++.+.... |+.++.--..+|
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Confidence 1223445666677776666666532211 223455666777778888888888887765322 466666667788
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 041822 363 MKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~ 381 (500)
.-..+++.|+.-|+...+.
T Consensus 352 l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 8888888888888887764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-06 Score=82.39 Aligned_cols=324 Identities=15% Similarity=0.130 Sum_probs=169.5
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
.+++|.+.|.|.+|.+....-. ....|......+..++.+..-+++|-.+|+.+.. +...+.+|-+-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~---~l~~de~il~~ia~alik~elydkagdlfeki~d----------~dkale~fkkg 687 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDE---ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----------FDKALECFKKG 687 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHH---HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----------HHHHHHHHHcc
Confidence 4567778888877776543221 2345667777777777777777777777776643 11223333333
Q ss_pred ccHHHHHHHHHHHHHHHhc------c-----ccCCCh--------hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHH
Q 041822 153 QSYEETLEAFDRMEREIFV------G-----IRKFGS--------EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNK 213 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~------~-----~~~~~~--------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 213 (500)
.-+.+|.++-+-.-....+ | ....|. ......+.+......|.+|+.+++.+... +.-..
T Consensus 688 daf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdq-k~~s~ 766 (1636)
T KOG3616|consen 688 DAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQ-KTASG 766 (1636)
T ss_pred cHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhh-ccccc
Confidence 3333333322211000000 0 000000 01112233445556677777777666542 12233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAG 293 (500)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 293 (500)
-|..+...|+..|+++.|+++|.+. ..++-.|.+|.+.|+|++|.++-++... -......|-+-..-+-
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLD 835 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHH
Confidence 4566667777777777777766432 2345566777777777777777655433 2234444555555566
Q ss_pred ccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 041822 294 LVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCK 373 (500)
Q Consensus 294 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (500)
+.|++.+|.++|-.+.. |+ ..|.+|-+.|..++.+++.++-... .-..|...+..-|-..|+...|..
T Consensus 836 ehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred hhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHH
Confidence 66777777766644322 22 3466777777777777666543321 112334445556666777777776
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 374 LYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
-|-+.-+ |.+-+..|-.++.++.|.++-. ..| ..|..-.-..+ ++++=--+.|.+++++.
T Consensus 904 ~flea~d---------~kaavnmyk~s~lw~dayriak---teg-g~n~~k~v~fl--waksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 904 HFLEAGD---------FKAAVNMYKASELWEDAYRIAK---TEG-GANAEKHVAFL--WAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh---ccc-cccHHHHHHHH--HHHhhCcHHHHHHHHhh
Confidence 6644321 3444555666666666555432 222 12322222223 34443346677777763
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-06 Score=87.41 Aligned_cols=233 Identities=12% Similarity=-0.015 Sum_probs=163.6
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN-----NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVV 248 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 248 (500)
.|-+...|-..|....+.++.++|.+++++.+..+.+. ...|.++++.-...|.-+...++|+++.+.. -.-.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 35566778888888888888888888888888644322 2457777777667777788888888887762 2345
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC-CCHhhHHHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK-PDIGAYNAMISSL 327 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 327 (500)
.|..|...|.+.+++++|.++|+.|.+.= .-....|...+..+.+.++-+.|..++.+..+.-.+ -........+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67778888888888888888888887642 245667888888888888888888888877765211 1233455556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhh
Q 041822 328 IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK--TRTVVMLMKFFCVNFRVDL 405 (500)
Q Consensus 328 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~ 405 (500)
.+.|+.+.+..+|+......++ -...|+..++.-.++|+.+.+.++|++.+..++.|. ...|...+..=...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 7788888888888877766433 556788888888888888888888888888777665 3344444444444455444
Q ss_pred HHHHH
Q 041822 406 GLNLW 410 (500)
Q Consensus 406 a~~~~ 410 (500)
++.+=
T Consensus 1690 vE~VK 1694 (1710)
T KOG1070|consen 1690 VEYVK 1694 (1710)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-07 Score=83.07 Aligned_cols=251 Identities=8% Similarity=0.004 Sum_probs=143.6
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 263 (500)
++-+.-.|++..++.-.+ ... .-..+......+.+++...|+.+.+. .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344555677777775555 222 11223445566677777778766543 3333332 55655555554444333445
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 264 GDAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (500)
+.++.-+++....+..+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554443333222 2222223334456678888887776543 2456666777888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH--c--CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 343 MEEKRIGHDNVTYHTMFFGLMK--S--SGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~--~--g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
|.+.+ +..+...+..++.. . +.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 87653 23344445554432 2 3577888888887653 45677777777777788888888888887776544
Q ss_pred CCCHhHHHHHHHHHhcCCCH-HHHHHHHHHHHHc
Q 041822 419 CPHGHALDLLVTGLCSRGRW-EEAFECSKQMLVR 451 (500)
Q Consensus 419 ~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 451 (500)
+-+..+...++.+....|+. +.+.+.+.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 22455555666666667776 5566777777643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-05 Score=69.98 Aligned_cols=363 Identities=11% Similarity=0.135 Sum_probs=208.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
+-+=++.+...|++++|.+....+....|+ +..++.+-+-+..+.+++++|+.+.+.-.... ..+. -+..-.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~~~~-~~fEKA 86 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----VINS-FFFEKA 86 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----hcch-hhHHHH
Confidence 334566678889999999999999988765 44566677777889999999996655432211 0011 111223
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------------
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP-------------------- 245 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-------------------- 245 (500)
.+..+.+..++|...++..- +.|..+...-...+.+.|++++|..+|..+.+.+..-
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence 34457899999999988332 2344567777788999999999999999997764320
Q ss_pred -------CHHHHHHH---HHHHHhcCChhHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHccCCHHHH
Q 041822 246 -------SVVTYNIR---IDGYCKKGCFGDAMRLFEEMERVA-------CLPSLQ-------TITTLIHGAGLVRNIHQA 301 (500)
Q Consensus 246 -------~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~-------~~~~ll~~~~~~~~~~~a 301 (500)
...+|..+ ...+...|++.+|+++++...+.+ -.-+.. .-..+.-.+-..|+..+|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 01123322 234456788888888888773211 111111 122234456677888888
Q ss_pred HHHHHhchhCCCCCCHhh----HHHHHHHHHhc---------------------------------------------CC
Q 041822 302 RQLFDEMPKRNLKPDIGA----YNAMISSLIRC---------------------------------------------RD 332 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~----~~~li~~~~~~---------------------------------------------g~ 332 (500)
..++....+.+. +|... -|.|+..-... +.
T Consensus 244 ~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888877653 23211 11111110000 00
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHhhHHH
Q 041822 333 LNAAMELMDEMEEKRIGHDNVTYHTMFFGLM--KSSGLEGVCKLYDRMIEGKFVPKT--RTVVMLMKFFCVNFRVDLGLN 408 (500)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~ 408 (500)
.+.+.++..... +..|. ..+.+++..+. +.....++.+++...-+. .|.. ......+......|+++.|.+
T Consensus 323 ~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 011111100000 11122 22333333222 222355566666555443 3433 334445556677899999999
Q ss_pred HHH--------HHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCCCHHH----HHHHHHHHHHcCchh
Q 041822 409 LWG--------YLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR--RRQVSEAS----YRMLQRYLVQANANE 474 (500)
Q Consensus 409 ~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~----~~~l~~~~~~~~~~~ 474 (500)
++. .+.+.+..| .+...+...+.+.++.+.|..++++.... .-.+.... +..+...-.+.|..+
T Consensus 398 il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 988 444444444 45556777788888877777777776541 11222222 333334445678888
Q ss_pred HHHHHHHHHHHhh
Q 041822 475 KLEDLDRMIKNLQ 487 (500)
Q Consensus 475 ~~~~~~~~~~~~~ 487 (500)
++..+++.+.+..
T Consensus 476 ea~s~leel~k~n 488 (652)
T KOG2376|consen 476 EASSLLEELVKFN 488 (652)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887753
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-07 Score=82.73 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.....+..|.+.++++.|.+.++.|.+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333334444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-05 Score=76.27 Aligned_cols=302 Identities=11% Similarity=0.151 Sum_probs=207.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHH
Q 041822 70 ENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRI 149 (500)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (500)
.++|+-... .-++.+..+..+++..-+ .| .+...+...+-+++|..+|+.... +..+...++.
T Consensus 1024 QnLLiLtAi-kad~trVm~YI~rLdnyD--a~------~ia~iai~~~LyEEAF~ifkkf~~------n~~A~~VLie-- 1086 (1666)
T KOG0985|consen 1024 QNLLILTAI-KADRTRVMEYINRLDNYD--AP------DIAEIAIENQLYEEAFAIFKKFDM------NVSAIQVLIE-- 1086 (1666)
T ss_pred hhhHHHHHh-hcChHHHHHHHHHhccCC--ch------hHHHHHhhhhHHHHHHHHHHHhcc------cHHHHHHHHH--
Confidence 344443333 345666777777665432 12 355666778889999999987532 3445555554
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
.-+..++|.+.-++.. .+.+|..+..+-.+.|.+.+|.+-|-+.- |+..|..++..+.+.|.|+
T Consensus 1087 -~i~~ldRA~efAe~~n----------~p~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1087 -NIGSLDRAYEFAERCN----------EPAVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred -HhhhHHHHHHHHHhhC----------ChHHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHH
Confidence 4577788877766553 45689999999999999999998877653 7888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhch
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
+..+++.-..+..-+|... ..||-+|++.++..+..+++. | ||......+.+-|...+.++.|.-+|..
T Consensus 1151 dLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-----g--pN~A~i~~vGdrcf~~~~y~aAkl~y~~-- 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-----G--PNVANIQQVGDRCFEEKMYEAAKLLYSN-- 1219 (1666)
T ss_pred HHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-----C--CCchhHHHHhHHHhhhhhhHHHHHHHHH--
Confidence 9999987766665555544 578999999999888666542 3 8888888888889999999998877763
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 041822 310 KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 389 (500)
+.-|..|...+...|++..|.+.-++.. +..+|..+-.+|...+.+.-| +|...++.....-
T Consensus 1220 -------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhade 1281 (1666)
T KOG0985|consen 1220 -------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADE 1281 (1666)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHh
Confidence 4457777788888888887776544332 667787777777766554433 3333333444555
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS 434 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 434 (500)
...++..|...|-+++...+++..+... +.....|+.|.-.|.+
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence 6667777777777777776666554321 1233445555555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-05 Score=69.06 Aligned_cols=318 Identities=8% Similarity=0.002 Sum_probs=192.3
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh-
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE- 179 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 179 (500)
.+..-...+...+...|++..|+.-|....+..|+ ++.++..-...|...|+-.-|+.-|.++.+. +||-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------KpDF~~ 107 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL------KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc------CccHHH
Confidence 34455567778888899999999999988876554 4455555566788889888888888887764 34422
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
+--.-...+.+.|.++.|..-|+..++..+.+.. ...+..+.-..++-+ .....+..+..
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~----~~eaqskl~~~~e~~----------------~l~~ql~s~~~ 167 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL----VLEAQSKLALIQEHW----------------VLVQQLKSASG 167 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch----hHHHHHHHHhHHHHH----------------HHHHHHHHHhc
Confidence 2222345678899999999999998863221111 111111111111111 11122333444
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMEL 339 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 339 (500)
.|+...|++....+.+-. +-|...|..-..+|...|++..|+.=++...+.. .-+..++-.+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777777766666643 3455556666666777777777666555554432 22444555555566666777777666
Q ss_pred HHHHHHCCCCCCHH----HHHHH---------HHHHHHcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCH
Q 041822 340 MDEMEEKRIGHDNV----TYHTM---------FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT---VVMLMKFFCVNFRV 403 (500)
Q Consensus 340 ~~~~~~~~~~~~~~----~~~~l---------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~ 403 (500)
.++..+.+ ||.. .|..+ +......++|.++++-.+...+......... +..+..++...|++
T Consensus 246 iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 66666542 2321 11111 1223455677777777777665432212222 33445555667888
Q ss_pred hhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 404 DLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 404 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
.+|++...+.++.. +.|+.++.--..+|.-...+++|+.=|+...+.
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888888888743 234777777778888888888888888887654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-05 Score=79.64 Aligned_cols=397 Identities=9% Similarity=-0.053 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
-...|..|...|+...+-.+|.+.|+.+...+ ..+........+.+++..+++.|..+.-...+..|.......|...
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 34556667777777777777888888777654 4456667777788888888888877754444433322222233334
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
.-.|...++...|..-|+...+. .|.|...|..++.+|.++|+...|.++|++...-.|.+...-.-....-+..
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~-----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRT-----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcC-----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 44566777777777777776655 4677888888888888888888888888777652222333323333344566
Q ss_pred CCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-------HHcCCCCCHHHHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLR------GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM-------ERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~~~~~~~~~~~~ll~~~ 292 (500)
|.+.++...+...... |..--..++-.+...+...|-..+|...++.- .......+...|-.+-++|
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 7777777776665432 11112223333333333333333333333322 2111111222222222211
Q ss_pred H-----------------------ccCCH---H---HHHHHHHhchhCCCCCCHhhHHHHHHHHHh----cC----CHHH
Q 041822 293 G-----------------------LVRNI---H---QARQLFDEMPKRNLKPDIGAYNAMISSLIR----CR----DLNA 335 (500)
Q Consensus 293 ~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~ 335 (500)
. ..+.. | -+.+.+-.-.+ ...+..+|..++..|.+ +| +...
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 1 11110 0 01111100000 01122334444433333 11 2235
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH
Q 041822 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 415 (500)
|...+....+..- .+..+||.|--. ...|++.-+..-|-+-+... +....+|..+--.|....+++.|...|.....
T Consensus 802 Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 5555655544322 255666665443 45566666666555444321 22355666666667777888888888888777
Q ss_pred CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCchhH
Q 041822 416 RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML----VRRRQVSEASYRMLQRYLVQANANEK 475 (500)
Q Consensus 416 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (500)
.. +.|...|-.........|+.-++..+|..-- ..|-.++...|-....-....|+.+.
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 43 2244455444444455677777777776621 12334454444444444445555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-05 Score=72.71 Aligned_cols=147 Identities=10% Similarity=0.061 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR-YFDQAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
++..+..++...+..++|+.+...+++.. |-+..+|+....++...| ++++++..++.+.+..|. +..+|.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk--nyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK--NYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc--chHHhHHHHH
Confidence 34444455555666777777777766642 233334555555555555 456677776666666544 3334443333
Q ss_pred HHhccccH--HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 148 RISKFQSY--EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 148 ~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
.+.+.|.. ++++..++++.+. .+.+..+|+...-++...|+++++++.++++++..+-|...|+.....+.+
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~-----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSL-----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 33344432 4555555555554 355566666666666666666666666666665444555555555544433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-06 Score=76.84 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=34.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVA--CLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+...|.+.|++++|+..+++..+.. -+.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445666666777666666665542 1112345666666666667777666666665543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-05 Score=73.63 Aligned_cols=236 Identities=12% Similarity=0.052 Sum_probs=176.3
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc-cHHHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ-SYEETL 159 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~ 159 (500)
+++.+|...|+.+.. ..++.++|+.+.+.+.+..|... .+|..-...+...| .+++++
T Consensus 34 ~~~~~a~~~~ra~l~-------------------~~e~serAL~lt~~aI~lnP~~y--taW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 34 PEFREAMDYFRAVYA-------------------SDERSPRALDLTADVIRLNPGNY--TVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred HHHHHHHHHHHHHHH-------------------cCCCCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHHcchhHHHHH
Confidence 456667766666554 34577889999999998877644 45555555555666 689999
Q ss_pred HHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH--HHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 160 EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM--KEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
..++++... .+.+..+|+.....+.+.|+. +++..+++.+.+..+-|..+|+....++...|+++++.+.+++
T Consensus 93 ~~~~~~i~~-----npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 93 DFAEDVAED-----NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred HHHHHHHHH-----CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999887 467778898777777777763 6789999999987778999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHH
Q 041822 238 MVLRGFRPSVVTYNIRIDGYCKK---GCF----GDAMRLFEEMERVACLPSLQTITTLIHGAGLV----RNIHQARQLFD 306 (500)
Q Consensus 238 ~~~~g~~~~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~ 306 (500)
+++.+.. |...|+.....+.+. |.. ++.++...++.... +-|...|+-+...+... ++..+|.+.+.
T Consensus 168 ~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 168 LLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 9988644 667777666555544 323 46777777777654 45677788877777763 44567888888
Q ss_pred hchhCCCCCCHhhHHHHHHHHHhcC------------------CHHHHHHHHHHHHH
Q 041822 307 EMPKRNLKPDIGAYNAMISSLIRCR------------------DLNAAMELMDEMEE 345 (500)
Q Consensus 307 ~~~~~~~~~~~~~~~~li~~~~~~g------------------~~~~a~~~~~~~~~ 345 (500)
+..+.+ ..+......|++.|+... ..++|.++++.+.+
T Consensus 246 ~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 246 EVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred Hhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 877754 336778888999998642 34789999998853
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.4e-09 Score=58.52 Aligned_cols=32 Identities=59% Similarity=1.073 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 242 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
|+.||..+|+.||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-06 Score=84.49 Aligned_cols=221 Identities=14% Similarity=0.080 Sum_probs=141.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC---CCCccHHHHHHHHHHHhccccHHHHH
Q 041822 83 GLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH---PSLLTLKSMSIMLSRISKFQSYEETL 159 (500)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (500)
++.|-++-...+.. |.+...|...+......++.++|+++++++...- ........|.++++.-...|.-+...
T Consensus 1441 pesaeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 33444444444332 4455567777777778888888888888877641 11123346666666666667777777
Q ss_pred HHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 160 EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
++|++..+.. ..-.+|..|...|.+.+..++|.++++.|.+++......|...+..+.+.++-++|..++.+..
T Consensus 1518 kVFeRAcqyc------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1518 KVFERACQYC------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHhc------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777776542 1234577777777777888888888888877666677777777777777777777777777766
Q ss_pred HCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC
Q 041822 240 LRGFRPS---VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP 315 (500)
Q Consensus 240 ~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 315 (500)
+. -|. .......+..-.+.|+.+.+..+|+...... +--...|+..++.-.+.|+.+.+..+|++....++.|
T Consensus 1592 ~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1592 KS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 65 222 2223334444456677777777777666543 2345566777777777777777777777776665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=58.19 Aligned_cols=32 Identities=38% Similarity=0.645 Sum_probs=24.9
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 417 GFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 417 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67777777777777777777777777777776
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-05 Score=70.47 Aligned_cols=363 Identities=13% Similarity=0.060 Sum_probs=232.3
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHH
Q 041822 110 LHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFC 189 (500)
Q Consensus 110 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 189 (500)
..+....|+++.|...|.+.....|. +...|..-..+|+..|++++|++--.+-.+. .|.-...|+....++.
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l-----~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRL-----NPDWAKGYSRKGAALF 81 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhc-----CCchhhHHHHhHHHHH
Confidence 34566889999999999999988665 4456777778899999999998876666555 4556778999999999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHHHHCC---CCCCHHHHHHHHHHH------
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT---AMEMFYHEMVLRG---FRPSVVTYNIRIDGY------ 257 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g---~~~~~~~~~~li~~~------ 257 (500)
-.|++++|+.-|.+-++..+.|...++-+..++....... .--.++..+.... .......|..++..+
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999999999999877888888888888772110000 0000111111000 000111222222221
Q ss_pred ----HhcCChhHHHHHHHH-----HHHcC-------CCC----------------------CHHHHHHHHHHHHccCCHH
Q 041822 258 ----CKKGCFGDAMRLFEE-----MERVA-------CLP----------------------SLQTITTLIHGAGLVRNIH 299 (500)
Q Consensus 258 ----~~~g~~~~a~~~~~~-----m~~~~-------~~~----------------------~~~~~~~ll~~~~~~~~~~ 299 (500)
.+-.++..|...+.. +...| ..| -..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 111111111111110 00000 111 1123556778888889999
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHHcCChhHHH
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF-------FGLMKSSGLEGVC 372 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~a~ 372 (500)
.+++-+....+.. -+..-++....+|...|...++...-....+.|-. ...-|+.+. .+|.+.++++.++
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9999999988875 46666788888899999998888887777666543 333344333 3566677889999
Q ss_pred HHHHHHHhCCCCCCHHHH-------------------------HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHH
Q 041822 373 KLYDRMIEGKFVPKTRTV-------------------------VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDL 427 (500)
Q Consensus 373 ~~~~~~~~~~~~p~~~~~-------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 427 (500)
..|.+.......|+...= ..-...+.+.|++..|...+.++++.. +-|...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 998887654444442210 111334667799999999999999876 457788999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 428 LVTGLCSRGRWEEAFECSKQMLVRRRQVSEA-SYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
-.-+|.+.|.+..|++=.+...+. .|+.. .|..=..++....+++.+.+.+++-.+
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998877777654 33322 232223444445566666655555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-06 Score=79.66 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=97.7
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
.+.|+..+|.-.|+...+. .|.+..+|..|.......++-..|+..+.+.++-.+.|....-.|.-.|...|.-.
T Consensus 296 m~nG~L~~A~LafEAAVkq-----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQ-----DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HhcCCchHHHHHHHHHHhh-----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 3445555555555554444 24445555555555555555555555555555433444455555555555555444
Q ss_pred HHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 230 AMEMFYHEMVLRGFR--------PSVVTYNIRIDGYCKKGCFGDAMRLFEEME-RVACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
.|.+.++.-+....+ ++...-+. ..+.....+.+..++|-++. ..+..+|......|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 444444444322100 00000000 01111122223333333332 22323444444444444555555555
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
|.+.|+..+... +-|...||.|...++...+.++|+..|.+..+..+.--.+-|| |.-.|...|.+++|.+.|-.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHH
Confidence 555555555542 2244455555555555555555555555555542221112233 33445555555555555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-06 Score=80.03 Aligned_cols=222 Identities=11% Similarity=0.037 Sum_probs=119.4
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
.+.+.|++.+|.-.|+..++..|.+...|..|.......++-..|...+.+..+.. +-|......|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34566667777777777766666677777777777777776666776666666653 22455566666667777777777
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHhch-hCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 267 MRLFEEMERVACL--------PSLQTITTLIHGAGLVRNIHQARQLFDEMP-KRNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 267 ~~~~~~m~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
++.++.-.....+ ++...-.. ..+..........++|-++. +.+..+|..+...|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777666443200 00000000 01111111223333333332 2232345555555555555666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHH
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLI 414 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 414 (500)
+.|+......+. |..+||-|...++...+.++|+..|.+..+. .|. ......|.-+|...|.+++|...|-..+
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 666665554433 5556666666666666666666666665543 444 2222334445556666666665554444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00038 Score=68.87 Aligned_cols=191 Identities=12% Similarity=0.083 Sum_probs=122.7
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
..+.|..++|..+++...... ..|..|+..+-..|.+.|+.++|..++++..+..|. ......++.+|++.+++.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~---eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS---EELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc---HHHHHHHHHHHHHHHHHH
Confidence 356788888887777766543 237778888888888888888888888888887665 456677777888887776
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC----------HHHHHHHHHHhhh--CCCCCHHhHHHHHHHHHh
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE----------MKEARSVFVKLLS--RFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~--~~~~~~~~~~~l~~~~~~ 224 (500)
+-.++--++-+. .|.+...+=++++.+.+... ..-|.+.++.+.+ |-..+..=...-......
T Consensus 128 ~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~ 202 (932)
T KOG2053|consen 128 KQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL 202 (932)
T ss_pred HHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh
Confidence 655544444433 34455555555555544321 2345666666664 211122222222334456
Q ss_pred cCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 225 SGDVTAMEMFYH-EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 225 ~~~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
.|++++|..++. ...+.-..-+...-+.-++.+...++|.+..++-.++...|
T Consensus 203 ~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 203 QGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 778888888873 34443333344555566777888899999998888888877
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-05 Score=75.32 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=102.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCC
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRD 332 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 332 (500)
.+.+......|.+|+.+++.+++.. .-..-|..+.+-|+..|+++.|.++|.+.- .++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455566788888888888887764 334457777788888888988888886532 35667888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 041822 333 LNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGY 412 (500)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 412 (500)
+++|.++-++.. |.......|-+-..-+-.+|++.+|.++|-.+- .|+. .|..|-+.|..+...++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 988888765543 334455556555566667777777777664332 3332 24455555655555555443
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 413 LIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
-...- -..+...+..-|...|+...|..-|-+
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 22110 012233344444455555555544433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.0003 Score=65.65 Aligned_cols=413 Identities=12% Similarity=0.122 Sum_probs=227.1
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+-..|..|++-+..+ ..+++.+.++.+... +|-++..|..-+....+..+++....+|.+.... ..+...|..
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW~l 91 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLWKL 91 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHHHH
Confidence 3455677888876655 889999999999874 6788899999999999999999999999998874 334445555
Q ss_pred HHHHHhcc-ccH----HHHHHHHHHHHHHHhccccCCChhhHHHHHHH---------HHcCCCHHHHHHHHHHhhhCCC-
Q 041822 145 MLSRISKF-QSY----EETLEAFDRMEREIFVGIRKFGSEEFNVLLQA---------FCTQKEMKEARSVFVKLLSRFA- 209 (500)
Q Consensus 145 l~~~~~~~-g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---------~~~~~~~~~A~~~~~~m~~~~~- 209 (500)
.+..-.+. |+. +...+.|+-..... |....+...|+..+.. +..+.+.+...++|++++..--
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~ki--g~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKI--GMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHh--ccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 55422221 222 22334444433332 1133344456655544 3344466677778888764100
Q ss_pred ------CCHHhHHHHHHHHH-------hcCCHHHHHHHHHHHHHC--CCCCCHHH---------------HHHHHHHHHh
Q 041822 210 ------PNNKTMNILLLGFK-------ESGDVTAMEMFYHEMVLR--GFRPSVVT---------------YNIRIDGYCK 259 (500)
Q Consensus 210 ------~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~--g~~~~~~~---------------~~~li~~~~~ 259 (500)
-|-..|..=|+... +...+..|+++++++... |+..+..+ |..+|.-=-.
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 11122222222111 223455677777776543 44322222 4334432211
Q ss_pred cCCh--------hHHHHHHHHH-HHcCCCCCHHHHH-HHH----HHHHccCC-------HHHHHHHHHhchhCCCCCCHh
Q 041822 260 KGCF--------GDAMRLFEEM-ERVACLPSLQTIT-TLI----HGAGLVRN-------IHQARQLFDEMPKRNLKPDIG 318 (500)
Q Consensus 260 ~g~~--------~~a~~~~~~m-~~~~~~~~~~~~~-~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 318 (500)
++-- ....-.+++. .-.+..|+..... ..+ +.+...|+ -+++..+++...+.-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0111122221 1223333322111 111 11222232 344445555444332222333
Q ss_pred hHHHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHH
Q 041822 319 AYNAMISSLIRC---RDLNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP-KTRTVVML 393 (500)
Q Consensus 319 ~~~~li~~~~~~---g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l 393 (500)
+|..+.+---.. ...+...+++++.... ...| ..+|...+....+....+.|..+|.+..+.+..+ +...+.++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 333332211111 1244455555555443 2222 3456667777777777888888888888776666 45556666
Q ss_pred HHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcC
Q 041822 394 MKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS--EASYRMLQRYLVQAN 471 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~ 471 (500)
+.-+| .++.+-|.++|+--++. +.-+.......++-+...++-..|..+|++....++.|+ ...|..++..=..-|
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 66554 46677788888776653 123334445666677777777788888888877755554 356788888778888
Q ss_pred chhHHHHHHHHHHHhhc
Q 041822 472 ANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 472 ~~~~~~~~~~~~~~~~~ 488 (500)
+.+.+.++.+.+.....
T Consensus 487 dL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFP 503 (656)
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 88888887776665544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-06 Score=73.60 Aligned_cols=184 Identities=9% Similarity=0.048 Sum_probs=120.3
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHH-
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS---EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNK- 213 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~- 213 (500)
....+......+...|++++|...|+++.... |.+. .++..+..++.+.|++++|...++++.+..+.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 44456666667777888888888888776652 2222 46677778888888888888888888764333332
Q ss_pred --hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 041822 214 --TMNILLLGFKES--------GDVTAMEMFYHEMVLRGFRPSV-VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL 282 (500)
Q Consensus 214 --~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 282 (500)
++..+..++.+. |+.+.|.+.++.+.+. .|+. ..+..+..... .... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------
Confidence 455555555543 6677888888887766 3332 22222211100 0000 00
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhchhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 283 QTITTLIHGAGLVRNIHQARQLFDEMPKRNL--KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.....+...+.+.|++++|...+....+... +.....+..+..++...|+.++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455668899999999999999887632 223578889999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.8e-05 Score=72.07 Aligned_cols=244 Identities=11% Similarity=0.070 Sum_probs=146.0
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh-----------CCCCccHHHHHHHHH
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT-----------HPSLLTLKSMSIMLS 147 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~l~~ 147 (500)
..|+-+.|.+..+.+. +...|..+.++|.+.++++-|.-.+-.|... +++... ....-
T Consensus 740 tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~e----akvAv 808 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDE----AKVAV 808 (1416)
T ss_pred EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchh----hHHHH
Confidence 4466666665554432 4567788888888887777776666555431 122111 11122
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.-...|..++|+.+|++-++.+ .|=+.|...|.|++|.++-+.--+ +. =..||..-...+...++
T Consensus 809 LAieLgMlEeA~~lYr~ckR~D-------------LlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYD-------------LLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-------------HHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHHHHHHHhhcc
Confidence 2345677888888887766543 344556667888888776544221 11 12456566666666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
.+.|++.|++.... --.++..|. .++.....+.+++. |...|......+-..|++|.|+.+|..
T Consensus 874 i~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred HHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHH
Confidence 77777776543211 111222111 12222223333322 345566666666778888888888876
Q ss_pred chhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 308 MPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 308 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
... |-+++...|-.|++++|-.+-++-. |......+.+.|-..|++.+|..+|.+..
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 544 5566777777888888887765432 55666678888888899999998887764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-05 Score=79.75 Aligned_cols=240 Identities=11% Similarity=0.107 Sum_probs=132.4
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
+.....+..|+..+...+++++|.++.+..++.. |-....|-.....+...++.+.+.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 4455566666666666777777777777665542 22222233333344455544433333 2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
++.......++.-...+...|... ..+..++..+..+|-+.|+.++|..+++++++-.+-|..+.|.+...|.
T Consensus 89 -~l~~~~~~~~~~~ve~~~~~i~~~------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 89 -LIDSFSQNLKWAIVEHICDKILLY------GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred -hhhhcccccchhHHHHHHHHHHhh------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 222222333332223333333332 2244566777777777888888888888877744667777788777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQ 303 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 303 (500)
.. ++++|.+++.+.+.. |...+++.++.+++.++.... |+. .+.-.+
T Consensus 162 e~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~ 208 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLR 208 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHH
Confidence 77 777777777666544 455556666666666666543 221 111112
Q ss_pred HHHhchhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 304 LFDEMPKR-NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363 (500)
Q Consensus 304 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (500)
+.+.+... |..--..++-.+-..|-..++++++..+++.+.+.... |.....-++..|.
T Consensus 209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 209 IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22222221 11222344555566666777777777777777766444 4455555555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-05 Score=76.68 Aligned_cols=214 Identities=13% Similarity=0.117 Sum_probs=169.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+...+...|-..+|+.+|+++. .|.-+|.+|+..|+..+|..+..+..+ -+||...|..+.+..
T Consensus 402 ~~laell~slGitksAl~I~Erle-------------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-------------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-------------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 446667888999999999999874 467789999999999999999988887 578999999998887
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 302 (500)
....-+++|.++.+..-.+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+-.+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777778888887765432 22222223344789999999999877654 345667777778888999999999
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999887753 225678999999999999999999999999888633 556666677778899999999999998764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.1e-06 Score=68.66 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=77.2
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.+...|+-+....+....... .+.+....+..+....+.|++..|...|.+....-++|..+|+.+.-+|.+.|+
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~-----~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIA-----YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHhcccccchHHHHhhhhcc-----CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 334444444444444443222 233444444455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (500)
++.|..-|.+..+.- .-+...+|.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|+++.|.++..
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555555442 1133444555555555555555555555555443 1244444444445555555555555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-05 Score=78.32 Aligned_cols=245 Identities=13% Similarity=0.087 Sum_probs=142.6
Q ss_pred cccCCChhhHHHHHH--HHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-----
Q 041822 172 GIRKFGSEEFNVLLQ--AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR-GF----- 243 (500)
Q Consensus 172 ~~~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~----- 243 (500)
|+..-|..+-..+++ .|..-|+.+.|.+-.+-++ +...|..|.+.|.+..++|-|.-.+..|... |.
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 333445555555554 3556677777766666554 4556777777777777666666555555432 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhH
Q 041822 244 ---RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320 (500)
Q Consensus 244 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 320 (500)
.|+ .+-....-.....|..++|..+|++..+. ..|-+.|-..|.+++|.++-+.=.+..+ ..||
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 111 11112222234567777777777776652 3444556667777777776554333332 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----------CC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 321 NAMISSLIRCRDLNAAMELMDEMEE----------KR---------IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
.....-+-..++.+.|++.|++... .. -..|...|.--...+-..|+.+.|+.+|...++
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 5555555556667766666654211 10 011344444445555567778888877776653
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 382 KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 382 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
|-++++..|-.|+.++|-++-++- | |....-.+.+.|-..|++.+|..+|-+..
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 445666677788888888776543 2 33344467888888888888888887764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.8e-05 Score=76.78 Aligned_cols=238 Identities=10% Similarity=0.098 Sum_probs=108.7
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
....+..++..+...+++++|.++.+...+. .|.....|-.+...+.+.++.+++..+ .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-----~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~ 88 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE-----HKKSISALYISGILSLSRRPLNDSNLL----------------N 88 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCcceehHHHHHHHHHhhcchhhhhhh----------------h
Confidence 3444555555555555555555555543333 222333333333344444443333222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
++.......++..+..+...|.+.+ -+...+..+..+|-+.|+.++|..+++++.+.+ +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 2222333333333333333343332 123345555555555566666666666655554 33455555555555555 5
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
.++|.+++.+.... |...+++..+.++|.++....+. +...+ ..+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHH
Confidence 55555555544432 44444555555555555554211 11111 111111
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 041822 378 MIEG-KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC 433 (500)
Q Consensus 378 ~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 433 (500)
+... |..--..++..+-..|-..++++++..+++.+++... -|.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 1111 1111122333444555666677777777777776542 24444555555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-05 Score=67.48 Aligned_cols=165 Identities=14% Similarity=0.049 Sum_probs=137.1
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
|... ...-..+.-.|+-+....+........+ .+.......+....+.|++..|...|++.... .|+|..+|
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~~~~ 137 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APTDWEAW 137 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCCChhhh
Confidence 4445 6677777778888888887777655433 34455666888889999999999999998876 68999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
+.+.-+|.+.|+++.|..-|.+..+-.+-+...++.|.-.+.-.|+.+.|+.++......+.. |..+-..+.......|
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g 216 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQG 216 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcC
Confidence 999999999999999999999999866678888999999999999999999999998877533 6777788888999999
Q ss_pred ChhHHHHHHHHHHH
Q 041822 262 CFGDAMRLFEEMER 275 (500)
Q Consensus 262 ~~~~a~~~~~~m~~ 275 (500)
++++|..+...-..
T Consensus 217 ~~~~A~~i~~~e~~ 230 (257)
T COG5010 217 DFREAEDIAVQELL 230 (257)
T ss_pred ChHHHHhhcccccc
Confidence 99999988776544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-05 Score=68.18 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=81.1
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH-HhcCC--H
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF-KESGD--V 228 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~-~~~~~--~ 228 (500)
.++.+++...+++..+. .|.+...|..+...|...|++++|...|++..+-.+.+...+..+..++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~-----~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 45556666666666555 4667777777777777777777777777777765556667777766653 55555 3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
++|.+++++..+.... +...+..+...+.+.|++++|+..|+++.+..
T Consensus 127 ~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777777766422 55666667777777777777777777776654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-05 Score=76.30 Aligned_cols=165 Identities=8% Similarity=0.042 Sum_probs=127.0
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh
Q 041822 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178 (500)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (500)
++.+...+..+..+....|.+++|..+++.+.+..|+ .......+...+.+.+++++|+..+++.... .|.+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-----~p~~~ 154 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFSG-----GSSSA 154 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-----CCCCH
Confidence 4677888888889999999999999999999888776 4456667777888899999999999888877 46777
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
...+.+..++.+.|++++|..+|+++....+.+..++..+...+.+.|+.++|...|+...+.- .+....|+.++.
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~--- 230 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV--- 230 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH---
Confidence 8888888888999999999999999887555668888888888989999999999988887652 234455554432
Q ss_pred hcCChhHHHHHHHHHHHcC
Q 041822 259 KKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~ 277 (500)
+...-...++++.-.+
T Consensus 231 ---~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 231 ---DLNADLAALRRLGVEG 246 (694)
T ss_pred ---HHHHHHHHHHHcCccc
Confidence 3334445566554433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.2e-05 Score=63.02 Aligned_cols=248 Identities=10% Similarity=0.027 Sum_probs=132.3
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 265 (500)
+-+.-.|.+..++..-..... .+.+...-..+.++|...|.+..... +... |-.|.......+......-++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~-~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSS-SKTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcc-ccchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHH
Confidence 334444555554443333221 12344444555566666665543332 2222 223334444433333333344333
Q ss_pred H-HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 266 A-MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 266 a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
- .++.+.+.......+......-...|+..|++++|.+..+... +......=+..+.+..+++-|...+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3444444444433343333334445777777888777766511 22233333444566777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 345 EKRIGHDNVTYHTMFFGLMK----SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
+.. +..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++..+.... .
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-K 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-C
Confidence 652 55666666666654 23566777777777652 467777777777777777778888777777776542 2
Q ss_pred CHhHHHHHHHHHhcCCCHHH-HHHHHHHHH
Q 041822 421 HGHALDLLVTGLCSRGRWEE-AFECSKQML 449 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 449 (500)
++.+...+|.+-...|...+ ..+.+.++.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44454444444444454433 334445554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.5e-06 Score=79.04 Aligned_cols=241 Identities=9% Similarity=0.017 Sum_probs=185.5
Q ss_pred CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCC
Q 041822 98 HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG 177 (500)
Q Consensus 98 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 177 (500)
+++|--..-..+...+.+.|-...|..+++++.. |...+.+|...|+..+|..+..+-.+ .+|+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~le------k~~d 456 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELE------KDPD 456 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhc------CCCc
Confidence 3455555667788888999999999999988753 56678889999999999888877655 3788
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
...|..+.+..-...-+++|.++++..-.+ .-..+.......+++.++.+.|+.-.+.. +....+|-.+-.+.
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA 529 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence 999999999988888899999999887532 22222233344789999999998877663 33567888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
.+.++++.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.
T Consensus 530 Lqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 89999999999999988754 3345679999999999999999999999999987 446778888888889999999999
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 041822 338 ELMDEMEEKR-IGHDNVTYHTMFFGLM 363 (500)
Q Consensus 338 ~~~~~~~~~~-~~~~~~~~~~li~~~~ 363 (500)
+.+.++.... ...|......++....
T Consensus 608 ~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 608 KAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9998776431 1114444444444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.2e-05 Score=74.84 Aligned_cols=209 Identities=13% Similarity=0.122 Sum_probs=135.6
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCChHHHHH-HHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc
Q 041822 59 PQTTPLSSTLVENVLGRLFAAHSNGLKALE-FFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL 137 (500)
Q Consensus 59 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 137 (500)
|++.|.+.+.+...+-...+..|..++|=+ ++.++. .++...++.....+++.-...+.+..+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 84 (694)
T PRK15179 20 PTGGPASGPTILDLLEAALAEPGESEEAGRELLQQAR-------------QVLERHAAVHKPAAALPELLDYVRRYPH-- 84 (694)
T ss_pred CCCCCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHH-------------HHHHHhhhhcchHhhHHHHHHHHHhccc--
Confidence 345555556666566565555666555533 222221 2333333333333444333444444433
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+...+..+.....+.|.+++|+.+++..... .|.+......+...+.+.+++++|...+++..+..+.+....+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR-----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3456667777777888888888888887776 46677777888888888888888888888888776777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLI 289 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 289 (500)
+..++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|++..+.- .+....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8888888888888888888887742 2346777777777888888888888888776542 24445555444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-05 Score=69.57 Aligned_cols=141 Identities=14% Similarity=0.123 Sum_probs=102.5
Q ss_pred HHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc
Q 041822 111 HILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT 190 (500)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 190 (500)
...-..|++++|++.++.+.+..|+++ ..+......+.+.++..+|.+.++++... .|.....+-.+..+|.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~~l~~~~a~all~ 386 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALAL-----DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHh
Confidence 334567788888888888887766533 34555667778888888888888888766 34446667777788888
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041822 191 QKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLF 270 (500)
Q Consensus 191 ~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 270 (500)
.|++.+|+.+++......+.|+..|..|..+|.+.|+..++..-..+ .|...|++++|...+
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l 448 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFL 448 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHH
Confidence 88888888888888877778888888888888888887766654433 344567788887777
Q ss_pred HHHHHc
Q 041822 271 EEMERV 276 (500)
Q Consensus 271 ~~m~~~ 276 (500)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 776654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.8e-06 Score=70.47 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=94.5
Q ss_pred CCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH-HcCCC-
Q 041822 116 MRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF-CTQKE- 193 (500)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~- 193 (500)
.++.+++...++...+..|+ +...|..+...|...|++++|...|++..+. .+.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCC
Confidence 56667777777777776555 4567777888888888888888888887776 466777787777763 56666
Q ss_pred -HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 194 -MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 194 -~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
.++|.+++++..+..+.+..++..+...+.+.|++++|...|+.+.+.. +|+..-+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 4888888888887667788888888888888888888888888887763 3344333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00014 Score=61.10 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=121.2
Q ss_pred cCChHHHHHHHHHhhcCC--C-CCCCHHh-HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 80 HSNGLKALEFFKFTLQHP--H-FTPTPDA-FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~--~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
..++++.++++..+.... | ..++..+ |..++-+....|+.+-|...++.+....|......-+..+. +-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhch
Confidence 456677777777766521 2 3344443 55666777777888888888888777766654443333332 5566777
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFY 235 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 235 (500)
++|.+.++.+... .|.|..++-.-+...-..|+--+|++-++...+.+..|...|.-+...|...|++++|...+
T Consensus 103 ~~A~e~y~~lL~d-----dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 103 KEAIEYYESLLED-----DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hhHHHHHHHHhcc-----CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 8888888777766 36666777666666666777777777777777767777777777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 041822 236 HEMVLRGFRPSVVTYNIRIDGYCKK---GCFGDAMRLFEEMERV 276 (500)
Q Consensus 236 ~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 276 (500)
+++.-.. +.+...+..+...+.-. .+.+-|.++|.+..+.
T Consensus 178 EE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 178 EELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7776552 22334444444443332 2344566666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=64.38 Aligned_cols=105 Identities=10% Similarity=-0.025 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
+......+...|++++|...|+......|. +...+..+..++...|++++|...|++.... .+.+...+..+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a~~~lg 99 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW--SWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHHHHHH
Confidence 334555566666666666666666665443 4445566666666666666666666666654 355666666666
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
.++...|+.++|...|+...+..+.+...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 66666666666666666666543444444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0017 Score=60.88 Aligned_cols=373 Identities=12% Similarity=0.131 Sum_probs=219.1
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
|-|..+|..+++-+... ..+++++.++++....|. +...|..-+..-...++++....+|.+..... .+.+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv------LnlD 87 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVKV------LNLD 87 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------hhHh
Confidence 67899999999988777 899999999999987665 45678888999999999999999999887653 3677
Q ss_pred hHHHHHHHHHc-CCCHH----HHHHHHHHhhh--CCC-CCHHhHHHHHHH---------HHhcCCHHHHHHHHHHHHHCC
Q 041822 180 EFNVLLQAFCT-QKEMK----EARSVFVKLLS--RFA-PNNKTMNILLLG---------FKESGDVTAMEMFYHEMVLRG 242 (500)
Q Consensus 180 ~~~~ll~~~~~-~~~~~----~A~~~~~~m~~--~~~-~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~g 242 (500)
.|..-+.---+ .|+.. ...+.|+-..+ +.. -+...|+..+.. +.++.+++.++++|.++...-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 77776654433 23322 23344444443 321 223334444433 233445677888888877652
Q ss_pred CCCCHHHHH------HHHHHH-------HhcCChhHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHH
Q 041822 243 FRPSVVTYN------IRIDGY-------CKKGCFGDAMRLFEEMER--VACLPSLQT---------------ITTLIHGA 292 (500)
Q Consensus 243 ~~~~~~~~~------~li~~~-------~~~g~~~~a~~~~~~m~~--~~~~~~~~~---------------~~~ll~~~ 292 (500)
+.-=...|+ .=|+.. -+...+-.|.++++++.. +|+..+..+ |-.+|.-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w- 246 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW- 246 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-
Confidence 221112222 111111 123445667777777653 332211111 3223321
Q ss_pred HccCCHH---------HHHHHHHhc-hhCCCCCCHhh----H-HHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCC
Q 041822 293 GLVRNIH---------QARQLFDEM-PKRNLKPDIGA----Y-NAMISSLIRCRD-------LNAAMELMDEMEEKRIGH 350 (500)
Q Consensus 293 ~~~~~~~---------~a~~~~~~~-~~~~~~~~~~~----~-~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~ 350 (500)
-+.+-++ ...-++++. .-.+..|++.- | ...-+.+...|+ .+++.++++.....-..-
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1111100 011111111 11122222111 0 111112333333 455666666554432222
Q ss_pred CHHHHHHHHHHHHHc---CChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC-CHhHH
Q 041822 351 DNVTYHTMFFGLMKS---SGLEGVCKLYDRMIEG-KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP-HGHAL 425 (500)
Q Consensus 351 ~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 425 (500)
+.-+|..+...--.. ...+.....+.++... .+.|+ .+|..+++..-+..-++.|+.+|.++.+.+..+ ++.++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 333444333221111 1356666777776643 23444 457778888888888999999999999987666 78888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 426 DLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY-RMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 426 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
++++.-|| +++.+-|.++|+--... -+|...| ...+..+.+.++.+.++.+++...+.
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 99998877 78889999999986643 2344444 67789999999999999999988776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=62.35 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 193 EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 193 ~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
...+|.-+|++|.++.+|+..+.+-...++...|++++|+.++++....
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3445555555554444555555555555555555555555555544444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-05 Score=63.93 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=51.4
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
....+...|++++|...|+..... .|.+...|..+..++.+.|++++|...|+...+..+.+...+..+..++..
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 334445555566665555555444 344555555555555555555555555555555444555555555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 041822 225 SGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 225 ~~~~~~a~~~~~~~~~~ 241 (500)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-05 Score=61.68 Aligned_cols=61 Identities=10% Similarity=-0.052 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
..|..+...+...|++++|..+++...+..+.+...+..+..++...|+++.|...|+...
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333344444433333333223333333333333333444444444333333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-05 Score=61.52 Aligned_cols=107 Identities=12% Similarity=-0.032 Sum_probs=76.7
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
|.+......+...+...|++++|.+.|+.+.+..+.+...+..+...+.+.|+++.|..+++...+.+ +.+...+..+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 33455566677777778888888888887776556677777788888888888888888887776664 33566666677
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQT 284 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 284 (500)
..|...|++++|.+.|+...+.. |+...
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 77777888888888887777654 44443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0021 Score=64.60 Aligned_cols=405 Identities=10% Similarity=-0.032 Sum_probs=200.9
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
....+..+...++...+.+.|..+.-...+......-...|..+.-.+.+.++...|..-|+...+..|. +...|..+
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk--D~n~W~gL 602 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK--DYNLWLGL 602 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch--hHHHHHHH
Confidence 3444556666677777777777664333332111111122333444456667777777777777766443 66677777
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-------CCCCHHhHHHH
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-------FAPNNKTMNIL 218 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~~~~~l 218 (500)
..+|.+.|++..|+++|.+.... .|.+...---....-+..|.+++|...+...... ...-..++-.+
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~L-----rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASLL-----RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHhc-----CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 77777777777777777766544 2333333233333445667777777776665531 11122222222
Q ss_pred HHHHHhcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--H----HHHH-HHHHHHcCC------
Q 041822 219 LLGFKESGDV-------TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG--D----AMRL-FEEMERVAC------ 278 (500)
Q Consensus 219 ~~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~----a~~~-~~~m~~~~~------ 278 (500)
...+.-.|=. +.+.+.|.-.......-+...|-.+-++|.-.-..+ . ...+ +.+....+.
T Consensus 678 akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 678 AKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhH
Confidence 2222222222 222222222222211112222222222111000000 0 0000 011111111
Q ss_pred --------------CCCHHHHHHHHHHHHc----c----CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 041822 279 --------------LPSLQTITTLIHGAGL----V----RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 279 --------------~~~~~~~~~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 336 (500)
..+..+|..+...|.+ . .+...|+..+....+.. .-+..+|+.|.- ....|.+.-|
T Consensus 758 l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~a 835 (1238)
T KOG1127|consen 758 LFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACA 835 (1238)
T ss_pred HHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhh
Confidence 1123333333333322 1 12345667777666542 224455555543 3555777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHH-
Q 041822 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLI- 414 (500)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 414 (500)
...|-.-...... ...+|..+...+.+..+++.|...|...... .|+ ...+..........|+.-+...+|..--
T Consensus 836 QHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~e 912 (1238)
T KOG1127|consen 836 QHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDE 912 (1238)
T ss_pred hhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 7777655544333 5667777777788889999999999887754 443 4445444444455677777777776522
Q ss_pred -H--CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHcCchhHHHHHHHH
Q 041822 415 -D--RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR---------RRQVSEASYRMLQRYLVQANANEKLEDLDRM 482 (500)
Q Consensus 415 -~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 482 (500)
. .|--++..-|-+........|+.++-+...+++-.. +..-+...|.+......+.+.++++.++...
T Consensus 913 l~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 913 LCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred hhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 1 233445444444444455667766555444443211 3333445566666666666666665555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00082 Score=56.73 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=105.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+..++-+....|+.+.|..+++++...- |-+..+-..-.-.+-..|++++|+++++.+++..|.|..++.-=+..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-----PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHH
Confidence 3444555566788888888888877652 22222222222234456788888888888887667777777766666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCH
Q 041822 222 FKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL---VRNI 298 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~~~~ 298 (500)
.-..|+--+|.+-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.. +.+...+..+...+.- ..+.
T Consensus 130 lka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 66667766777666666654 45578888888888888888888888888887654 2233333344443332 3346
Q ss_pred HHHHHHHHhchhCC
Q 041822 299 HQARQLFDEMPKRN 312 (500)
Q Consensus 299 ~~a~~~~~~~~~~~ 312 (500)
..+.++|.+..+..
T Consensus 208 ~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 208 ELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHhC
Confidence 66777777776653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-05 Score=70.70 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
....++..+...++++.|..+|+++.+. ++.....+++.+...++-.+|.+++++..+..+.+......-..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--------~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--------DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--------CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3445566666677777888887777654 23345556777777777777777777777655666666776677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
.+.+.++.+.|..+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777766 343 4477777777777777777777776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00049 Score=63.67 Aligned_cols=122 Identities=11% Similarity=-0.038 Sum_probs=77.8
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGD 265 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~ 265 (500)
.+...|+.++|+..++.+....|-|...+......+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3445666677777777766655666666666666677777777777776666655 344 4445556666667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 266 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
|+..++...... +-|...|..|..+|...|+..++..-..+....
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 777766666543 455666777777777777666666665555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-05 Score=70.17 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=107.2
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
......++..+...++++.|+++|+++.+..|. ....++..+...++..+|.+++.+.... .+.+.....
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~-----~p~d~~LL~ 238 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKE-----NPQDSELLN 238 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 344567777788889999999999999987654 3445777777888999999999988866 466778888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
.-...+.+.++.+.|+++.+++.+-.|-+..+|..|..+|.+.|+++.|+..++.+--
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888899999999999999999986677778999999999999999999988876653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0084 Score=59.84 Aligned_cols=368 Identities=12% Similarity=0.099 Sum_probs=197.8
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+......+..+|...+..++|..+|+++.+. -|+..-...+..++.|-+++.+-.+.--++-+..|..+ +-.|..
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~-yyfWsV 150 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA-YYFWSV 150 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc-chHHHH
Confidence 47778888999999999999999999999876 47788888888999999888766555555555444432 223333
Q ss_pred HHHHHhccccHHH---------HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhh-h-CCCCCHH
Q 041822 145 MLSRISKFQSYEE---------TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL-S-RFAPNNK 213 (500)
Q Consensus 145 l~~~~~~~g~~~~---------a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~-~-~~~~~~~ 213 (500)
+--........+. |.+.++.+.+.+ | .-.+..-...-...+...|++++|.+++..-. + -.+-+..
T Consensus 151 ~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~--g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~ 227 (932)
T KOG2053|consen 151 ISLILQSIFSENELLDPILLALAEKMVQKLLEKK--G-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY 227 (932)
T ss_pred HHHHHHhccCCcccccchhHHHHHHHHHHHhccC--C-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH
Confidence 2222222223333 333444444432 1 11111122333344556788999999994433 3 3344556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------------cCChhHHHHHHHHHHHcC
Q 041822 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----------------KGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----------------~g~~~~a~~~~~~m~~~~ 277 (500)
.-+.-+..+...++|.+..++-.++...|. |. |...++.+.+ .+..+...+...+.....
T Consensus 228 l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~ 303 (932)
T KOG2053|consen 228 LENKKLDLLKLLNRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK 303 (932)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc
Confidence 666778888899999999999999998863 32 4444443222 112222222222222221
Q ss_pred CCCCHHHHHHHHHH---HHccCCHHHHHHHH-HhchhCC-CCCC---------HhhHHHHHHHHH---------------
Q 041822 278 CLPSLQTITTLIHG---AGLVRNIHQARQLF-DEMPKRN-LKPD---------IGAYNAMISSLI--------------- 328 (500)
Q Consensus 278 ~~~~~~~~~~ll~~---~~~~~~~~~a~~~~-~~~~~~~-~~~~---------~~~~~~li~~~~--------------- 328 (500)
..++ |-+-+.+ +..-|+.+++.-.| ++.-..- +.-| ..-...++..+.
T Consensus 304 -~Rgp--~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~ 380 (932)
T KOG2053|consen 304 -SRGP--YLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ 380 (932)
T ss_pred -ccCc--HHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 1111 2222222 23456666644332 2221110 0001 111122222221
Q ss_pred ---------hcC-----CHHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHHcCChhH---HHH
Q 041822 329 ---------RCR-----DLNAAMELMDEME---EKR------IGHDNV---------TYHTMFFGLMKSSGLEG---VCK 373 (500)
Q Consensus 329 ---------~~g-----~~~~a~~~~~~~~---~~~------~~~~~~---------~~~~li~~~~~~g~~~~---a~~ 373 (500)
-.| ..+.-..++.+.. +.| .-|+.. +-+.|+..+.+.++... |+-
T Consensus 381 h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~ 460 (932)
T KOG2053|consen 381 HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAIT 460 (932)
T ss_pred HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 112 1222333332222 122 222322 23567788888888664 344
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 374 LYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
+++...... .-|..+-..+|+.|+-.|-+..|.+++..+.-..+..|..-| .+..-+...|++..+...++..
T Consensus 461 LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 461 LLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHHHH
Confidence 444443321 234555567888899899999999999888765566554444 2334445566666666655554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0022 Score=61.82 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 041822 246 SVVTYNIRIDGYCKKGCFGDAMRLF 270 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~ 270 (500)
+....-.+.+++.+.|.-++|.+.|
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHH
Confidence 3344444555555555555555544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=3e-06 Score=48.99 Aligned_cols=33 Identities=42% Similarity=0.635 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS 456 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 456 (500)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-06 Score=48.88 Aligned_cols=33 Identities=45% Similarity=0.740 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS 281 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 281 (500)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555556666655555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.8e-06 Score=48.19 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 041822 423 HALDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455 (500)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 455 (500)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00017 Score=57.85 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhH
Q 041822 191 QKEMKEARSVFVKLLSRFAPN---NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS--VVTYNIRIDGYCKKGCFGD 265 (500)
Q Consensus 191 ~~~~~~A~~~~~~m~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~ 265 (500)
.++...+...++.+.+..+.+ ....-.+...+...|++++|...|+........++ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555433333 12222333455555555555555555555431111 1122334445555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 266 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
|+..++...... .....+......|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554432221 2233344444555555555555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.2e-06 Score=47.26 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLP 280 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 280 (500)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00028 Score=56.60 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHhHhhCCCC-ccHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 041822 116 MRYFDQAWELMSHVQRTHPSL-LTLKSMSIMLSRISKFQSYEETLEAFDRMER 167 (500)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (500)
.++...+...++.+.+..|.. ........+...+...|++++|...|+.+..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444444444444444443332 1112222233344444444444444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.1e-05 Score=69.19 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHH
Q 041822 350 HDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG--KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDL 427 (500)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 427 (500)
.+......++..+....+.+.+.+++.+.+.. ....-..|..++++.|.+.|..+.+..++..=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35555666666666666666666666666543 1212233445667777777777777777766666677777777777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 041822 428 LVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQA 470 (500)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 470 (500)
|++.+.+.|++..|.++..+|..++...+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777666665555556655444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00025 Score=54.71 Aligned_cols=104 Identities=8% Similarity=0.106 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
+......+.+.|++++|.+.++.+.+..|+.. .......+...+.+.|+++.|...|+.+...... .+....++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK--SPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC--CCcccHHHHHH
Confidence 33444445555555555555555554443321 1223334444555555555555555555443100 01112344444
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPN 211 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~ 211 (500)
..++.+.|+.++|.+.++++.+..+.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 555555555555555555555433333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=67.73 Aligned_cols=124 Identities=11% Similarity=0.100 Sum_probs=98.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhh
Q 041822 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV--ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGA 319 (500)
Q Consensus 242 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 319 (500)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667777888888888888888888888888765 2223344566889999999999999999988888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 041822 320 YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKS 365 (500)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (500)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888776666777777666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.9e-05 Score=44.01 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQMLVRRR 453 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (500)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577788888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=44.15 Aligned_cols=29 Identities=48% Similarity=0.915 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00028 Score=51.58 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=34.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGF-RPSVVTYNIRIDGYCKKG--------CFGDAMRLFEEMERVACLPSLQTITTLI 289 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~~ll 289 (500)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 455555555554444321 1223344444444444444444444444
Q ss_pred HHH
Q 041822 290 HGA 292 (500)
Q Consensus 290 ~~~ 292 (500)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00068 Score=52.23 Aligned_cols=96 Identities=8% Similarity=-0.002 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---NKTMNILLLGFKESGDVTAMEMFYHEMVLRGF--RPSVVTYNIRID 255 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~ 255 (500)
+..+...+.+.|++++|.+.|+.+.+..+.+ ...+..+..++.+.|+++.|...++.+..... ......+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 4444555555566666666665555422211 23444455555666666666666665554311 111334445555
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 041822 256 GYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~ 276 (500)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555566666666666655554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00042 Score=62.36 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHH
Q 041822 193 EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP---SVVTYNIRIDGYCKKGCFGDAMRL 269 (500)
Q Consensus 193 ~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~ 269 (500)
+.+.|.++|+...+.++.+...|..-+..+.+.++.+.|+.+|+..... +.+ ....|...++.=.+.|+.+.+.++
T Consensus 51 d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 51 DPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3333444444444434444444444444444444444444444444433 111 112445555544455555555555
Q ss_pred HHHHHH
Q 041822 270 FEEMER 275 (500)
Q Consensus 270 ~~~m~~ 275 (500)
.+++.+
T Consensus 130 ~~R~~~ 135 (280)
T PF05843_consen 130 EKRAEE 135 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00045 Score=50.48 Aligned_cols=77 Identities=17% Similarity=0.340 Sum_probs=44.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCC--------HHHHHHHHHhchhCCCCCCHhhHHH
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMERVAC-LPSLQTITTLIHGAGLVRN--------IHQARQLFDEMPKRNLKPDIGAYNA 322 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 322 (500)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 6777777777766554321 2234444555555555555555555
Q ss_pred HHHHHH
Q 041822 323 MISSLI 328 (500)
Q Consensus 323 li~~~~ 328 (500)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0049 Score=55.78 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHH
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES-GDVTAMEMFYHEMVLR----GFR-PSVVTYNIRID 255 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~ 255 (500)
...+..|...|++..|-+++..+ ...|... |+++.|.+.|++..+. |-. --..++..+..
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~l--------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKEL--------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH--------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 33444555555555555444433 3444444 6666666666665432 200 01223445556
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACL-----PSLQ-TITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
.+.+.|++++|.++|++....... .+.. .|-..+-++...||+..|.+.+++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666677777777777766543211 1111 112222234445666666666665544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00036 Score=50.97 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
..+...+...|++++|...++...+..+.+...+..+...+...++++.|...++...+.. +.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 3444455555555555555555554333344455555555555555555555555555442 112334445555555555
Q ss_pred ChhHHHHHHHHHHH
Q 041822 262 CFGDAMRLFEEMER 275 (500)
Q Consensus 262 ~~~~a~~~~~~m~~ 275 (500)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.022 Score=49.98 Aligned_cols=73 Identities=8% Similarity=-0.028 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhH---HHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAF---EKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK 140 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 140 (500)
++...+..-.. +...|++++|++.|+.+.... |-+.... -.++.++-+.+++++|...+++..+..|+.+...
T Consensus 31 ~~~~~Y~~A~~-~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQ-KLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 44555544333 456899999999999998853 3333332 4566778889999999999999999888776543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00064 Score=61.21 Aligned_cols=130 Identities=10% Similarity=0.102 Sum_probs=78.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR-ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
+|..++..+-+.+..+.|+.+|.+..+ ....+...|...... |...++.+.|.++|+...+. .+.+...|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-----f~~~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-----FPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-----HTT-HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----CCCCHHHHHH
Confidence 566666666666667777777777652 234455666555544 22345555577777776665 3556666677
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNN---KTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
-++.+.+.++.+.|..+|++....++++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777765433333 46666666666677777777766666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00038 Score=50.85 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=68.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.+.|+...+..+.+..++..+...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 34555566778888888888777655 3444566777777788888888888888887765555666777778888
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 041822 223 KESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~ 241 (500)
...|+++.|...+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 8888888888887776644
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0043 Score=49.88 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=70.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
.|...+...|++.+|...|++...- -+-.|......+.++....+++..|...++.+.+.+|...+......+.+.+..
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence 4455555666666666666666653 345566666666666666666666666666666655555555555556666666
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 203 (500)
.|.+.+|...|+..... -|+...-......+.+.|+.+++..-+..
T Consensus 173 ~g~~a~Aesafe~a~~~------ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 173 QGKYADAESAFEVAISY------YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred cCCchhHHHHHHHHHHh------CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 66666666666665543 22333333333344455554444443333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0022 Score=53.23 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=35.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKF-GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
..+...+...|++++|...|++...... .++ ....+..+...+.+.|++++|...+++..+..+.+...+..+..+
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3333344444444444444444433210 011 123444455555555555555555555544333344444444444
Q ss_pred HHhcCC
Q 041822 222 FKESGD 227 (500)
Q Consensus 222 ~~~~~~ 227 (500)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00053 Score=56.81 Aligned_cols=87 Identities=24% Similarity=0.277 Sum_probs=51.7
Q ss_pred CCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-----------------hHHH
Q 041822 210 PNNKTMNILLLGFKE-----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF-----------------GDAM 267 (500)
Q Consensus 210 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-----------------~~a~ 267 (500)
.|..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+ +-|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHH
Confidence 366666666666654 35666666777777777888888888888777654 222 2344
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 041822 268 RLFEEMERVACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
+++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 455555555555555555555554444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.034 Score=50.34 Aligned_cols=289 Identities=14% Similarity=0.100 Sum_probs=189.8
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH--HcCCCHHHHHHHHHHhhhCCCCCHHh----HHHHHHHHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF--CTQKEMKEARSVFVKLLSRFAPNNKT----MNILLLGFK 223 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~l~~~~~ 223 (500)
+..|+-..|.++-.+-.+. ...|......++.+- .-.|+.+.|.+-|+.|.. |..| ...|.-..-
T Consensus 95 agAGda~lARkmt~~~~~l-----lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAq 165 (531)
T COG3898 95 AGAGDASLARKMTARASKL-----LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred hccCchHHHHHHHHHHHhh-----hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHH
Confidence 3557777777776665544 344666666666553 447999999999999986 4443 333334445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHH---ccCC
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA-CLPSLQT--ITTLIHGAG---LVRN 297 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~--~~~ll~~~~---~~~~ 297 (500)
+.|+.+.|.++-+........ =...+...+...|..|+|+.|+++++.-.... +.+++.- -..|+.+-. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 678889999888777665321 34577889999999999999999999876533 3344321 223333211 1234
Q ss_pred HHHHHHHHHhchhCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGA-YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+....|+.. .+..+.+.|+ .+.+-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHH
Confidence 5555555544444 3455432 2344577899999999999999999886666543 2223344454 4444444
Q ss_pred HHHh-CCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCC
Q 041822 377 RMIE-GKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC-SRGRWEEAFECSKQMLVRRR 453 (500)
Q Consensus 377 ~~~~-~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~ 453 (500)
+... ..++|| ......+.++....|++..|..--+...+ ..|....|..|.+.-. ..|+-.++...+-+.....-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 4432 124555 55666777888888999988887777766 4588888887777654 45999999999999887655
Q ss_pred CCCHH
Q 041822 454 QVSEA 458 (500)
Q Consensus 454 ~~~~~ 458 (500)
.|+..
T Consensus 395 dPaW~ 399 (531)
T COG3898 395 DPAWT 399 (531)
T ss_pred CCccc
Confidence 56543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0021 Score=53.33 Aligned_cols=90 Identities=9% Similarity=-0.035 Sum_probs=52.7
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT-LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
..+..+...+...|++++|...|++..+..++... ...+..+...+.+.|++++|...+++.... .+.+...+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 110 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHH
Confidence 34555556666667777777777666654433221 235555666666677777777777666554 344555566
Q ss_pred HHHHHHHcCCCHHHHH
Q 041822 183 VLLQAFCTQKEMKEAR 198 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~ 198 (500)
.+...+...|+...+.
T Consensus 111 ~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 111 NIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHcCChHhHh
Confidence 6666666666544433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.035 Score=54.02 Aligned_cols=167 Identities=13% Similarity=0.142 Sum_probs=80.6
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
-+.+++. .+++..++... ++...-.+= .-+--|.+++|.+++-++.+++ ..+..+.+.|++-.
T Consensus 716 Vrc~dY~-Gik~vkrl~~i----~s~~~q~ae--i~~~~g~feeaek~yld~drrD----------LAielr~klgDwfr 778 (1189)
T KOG2041|consen 716 VRCGDYA-GIKLVKRLRTI----HSKEQQRAE--ISAFYGEFEEAEKLYLDADRRD----------LAIELRKKLGDWFR 778 (1189)
T ss_pred hhhcccc-chhHHHHhhhh----hhHHHHhHh--HhhhhcchhHhhhhhhccchhh----------hhHHHHHhhhhHHH
Confidence 3445554 34455554432 233332222 2234577888888887665531 13344455555555
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHh-------------------h---hCCCCCHHhH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL-------------------L---SRFAPNNKTM 215 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m-------------------~---~~~~~~~~~~ 215 (500)
..++++.=-... ....-..+|+.+...+.....|++|.+.|..- . ...+.|....
T Consensus 779 V~qL~r~g~~d~---dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~ll 855 (1189)
T KOG2041|consen 779 VYQLIRNGGSDD---DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELL 855 (1189)
T ss_pred HHHHHHccCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchH
Confidence 555544310000 00011223444444444444444444443321 1 1345566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 216 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
-.+..++...|.-++|.+.|- +.+. | .+.+..|...++|.+|.++-+..
T Consensus 856 p~~a~mf~svGMC~qAV~a~L---r~s~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYL---RRSL-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHH---hccC-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777777776665542 2221 1 12345566667777777665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=55.02 Aligned_cols=64 Identities=6% Similarity=-0.127 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMER 167 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (500)
..+..+...+...|++++|...|+......++.. ...++..+...+...|++++|+..+++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555666666666666554432221 122444455555555555555555555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.022 Score=50.02 Aligned_cols=61 Identities=11% Similarity=-0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY---NIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
+......+.+.|+++.|...|+.+...-.. +.... -.+..+|.+.+++++|...+++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333444455566677777666666654211 11111 23445666667777777777766654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.013 Score=53.07 Aligned_cols=129 Identities=13% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHhhh---C-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-
Q 041822 182 NVLLQAFCTQ-KEMKEARSVFVKLLS---R-FAP--NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR-----PSVV- 248 (500)
Q Consensus 182 ~~ll~~~~~~-~~~~~A~~~~~~m~~---~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~- 248 (500)
..+...|... |++++|.+.|++..+ . ..+ -..++..+...+.+.|++++|..+|++....-.. .+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344456666 788888888888764 1 111 1345667778888899999999999888765322 1222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHcc--CCHHHHHHHHHhchh
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVA--CLPS--LQTITTLIHGAGLV--RNIHQARQLFDEMPK 310 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~--~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~ 310 (500)
.|-..+-++...|++..|.+.|++..... +..+ ......|+.+|-.. ..++.+..-|+.+.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 22233445666789999999999887543 2222 23444555554432 225555555555544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00018 Score=51.43 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHH
Q 041822 117 RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKE 196 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 196 (500)
|+++.|+.+++.+.+..|...+...+..+..+|.+.|++++|..++++ .+.+ +.+....-.+..++.+.|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCCHHHHHHHHHHHHHhCCHHH
Confidence 445555555555554433211222333344445555555555555544 1111 1122223333444555555555
Q ss_pred HHHHHH
Q 041822 197 ARSVFV 202 (500)
Q Consensus 197 A~~~~~ 202 (500)
|+++|+
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=54.62 Aligned_cols=82 Identities=12% Similarity=-0.043 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 140 KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
..+..+...+...|++++|+..|++....... ......+|..+...+...|++++|...++...+..+....++..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34445555556666777777766666543200 0112235666666666666666666666666653333444455555
Q ss_pred HHHH
Q 041822 220 LGFK 223 (500)
Q Consensus 220 ~~~~ 223 (500)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0044 Score=49.05 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=34.2
Q ss_pred HHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCC
Q 041822 113 LARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQK 192 (500)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 192 (500)
+...|++++|.++|+.+....|. +...|..+..++-..|++++|+..|...... .+.+...+-.+..++...|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----KIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHHcC
Confidence 33444444444444444443322 2223333333444444444444444443333 2333344444444444444
Q ss_pred CHHHHHHHHHHh
Q 041822 193 EMKEARSVFVKL 204 (500)
Q Consensus 193 ~~~~A~~~~~~m 204 (500)
+.+.|.+.|+..
T Consensus 118 ~~~~A~~aF~~A 129 (157)
T PRK15363 118 NVCYAIKALKAV 129 (157)
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0022 Score=59.94 Aligned_cols=90 Identities=8% Similarity=-0.108 Sum_probs=47.6
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..+...|++++|++.|++.... .+.+...|..+..+|.+.|++++|+..++++++..+.+...|..+..++...|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3344455555555555555544 24445555555555555555555555555555433444555555555555555
Q ss_pred CHHHHHHHHHHHHHC
Q 041822 227 DVTAMEMFYHEMVLR 241 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~ 241 (500)
+++.|...|+...+.
T Consensus 85 ~~~eA~~~~~~al~l 99 (356)
T PLN03088 85 EYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.002 Score=60.29 Aligned_cols=87 Identities=9% Similarity=-0.024 Sum_probs=40.7
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041822 188 FCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAM 267 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 267 (500)
+...|++++|++.|++.++..+.+...|..+..++.+.|++++|...++.+++.. +.+...|..+..+|...|++++|+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3344455555555555544334444444444445555555555555554444432 113334444444444455555555
Q ss_pred HHHHHHHH
Q 041822 268 RLFEEMER 275 (500)
Q Consensus 268 ~~~~~m~~ 275 (500)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55554444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=51.31 Aligned_cols=95 Identities=8% Similarity=-0.018 Sum_probs=74.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+-.+...+...|++++|.++|+.+... .+.+..-|-.|.-++-..|++++|+..|.....-.+.|...+-.+..+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 334444566788888888888888776 466777788888888888888888888888876446778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 041822 222 FKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~ 241 (500)
+...|+.+.|++-|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877765
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0023 Score=53.10 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhh
Q 041822 245 PSVVTYNIRIDGYCKK-----GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGA 319 (500)
Q Consensus 245 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 319 (500)
.|..+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 3556666666655542 4444444555555555555555555555554332 1111 100 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 041822 320 YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367 (500)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (500)
+.++..-| -.+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11100000 12345566777777777777777777777776655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00052 Score=49.03 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
|+++.|+..|+++.+... ..++...+..+..++.+.|++++|..+++. .+..+.+......+..++.+.|++++|.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~---~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDP---TNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHC---GTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCC---CChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 455555555555555430 001223333345555555555555555554 2111112233333344555555555555
Q ss_pred HHHH
Q 041822 233 MFYH 236 (500)
Q Consensus 233 ~~~~ 236 (500)
.+++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.09 Score=48.05 Aligned_cols=111 Identities=14% Similarity=0.030 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFF 397 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 397 (500)
.+.+..|.-+...|+...|.++-.+.. + |+...|-.-+.+++..++|++..++... . -++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 345555666777888888877765553 2 5888888888888888888877766432 1 1235577788888
Q ss_pred HHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 398 CVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
.+.|+..+|..+... + .+..-+..|.+.|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888888777765 1 1245567778888888887764443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0092 Score=45.47 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCC--HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHH
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPT--PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRI 149 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 149 (500)
+...+...|++++|+.+|+..+.. |...+ ...+..+.+.+...|++++|..+++......|+.. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566789999999999999886 54443 34567788888999999999999999988766521 112222233456
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFC 189 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 189 (500)
...|+.++|++.+-..... +...|.--|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~--------~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE--------TLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 7889999999888665433 2235555555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.015 Score=57.02 Aligned_cols=142 Identities=13% Similarity=0.013 Sum_probs=83.6
Q ss_pred CCCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CChhHHHHHHHHHHh
Q 041822 314 KPDIGAYNAMISSLIRCR-----DLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKS--------SGLEGVCKLYDRMIE 380 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~ 380 (500)
+.+...|...+.+..... ..+.|..+|++..+..+. ....|..+..++... ++...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 445566666666543322 255667777766665322 223333333322221 112233333333333
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 041822 381 G-KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEAS 459 (500)
Q Consensus 381 ~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 459 (500)
. ....+...|..+.-.....|++++|...++++.+.. |+...|..+...+...|+.++|.+.+++.... .|...|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 2 123345666666555566788888888888888865 67778888888888888888888888888743 444444
Q ss_pred H
Q 041822 460 Y 460 (500)
Q Consensus 460 ~ 460 (500)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00062 Score=46.33 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
.|++++|++.|+++... .|.+..++..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555444 234444444555555555555555555555443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00082 Score=45.21 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=44.6
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCC
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPS 135 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 135 (500)
+...+...|++++|++.|+.+++.. |-+...+..+..++...|++++|...|+++.+..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455667788888888888888763 456667777788888888888888888888776664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.049 Score=46.47 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=28.0
Q ss_pred hhcCChHHHHHHHHHhhcCCCC-CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc
Q 041822 78 AAHSNGLKALEFFKFTLQHPHF-TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL 137 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 137 (500)
...|++.+|++.|+.+...... +-.....-.++.++-+.|+++.|...++++.+..|..+
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4455566666666655543211 11222344455555555666666666666555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.006 Score=55.33 Aligned_cols=269 Identities=13% Similarity=0.088 Sum_probs=160.8
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHh----HHHHHHHHHcCCChHHHHHHHHHhHhh----CCCCccHHHHHHH
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDA----FEKTLHILARMRYFDQAWELMSHVQRT----HPSLLTLKSMSIM 145 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l 145 (500)
...+++.|+....+.+|+.+++. | .-|..+ |..+..+|.-.+++++|.+.+..=... +...-...+...+
T Consensus 24 GERLck~gdcraGv~ff~aA~qv-G-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQV-G-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHh-c-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 45678999999999999999986 3 334443 556666677778999998876542211 1011111122334
Q ss_pred HHHHhccccHHHHHHHHHH-HHHHHhccccCCChhhHHHHHHHHHcCCC--------------------HHHHHHHHHHh
Q 041822 146 LSRISKFQSYEETLEAFDR-MEREIFVGIRKFGSEEFNVLLQAFCTQKE--------------------MKEARSVFVKL 204 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------------------~~~A~~~~~~m 204 (500)
...+--.|.+++|+-...+ +.-....|..-....++-.+...|...|+ ++.|.+.|.+-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 4445556778877654332 11100001011233455567777765543 23344444432
Q ss_pred hh-----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 205 LS-----R-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV----LRGFR-PSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 205 ~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
++ + --.-...|..|.+.|.-.|+++.|....+.-. +.|-+ .....+..+.+++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 21 1 11123456777777777889998887765432 22311 12456778888999999999999988865
Q ss_pred HH----cCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 274 ER----VAC-LPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR-----NLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 274 ~~----~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
.. .|- ......+-+|.+.|.-..++++|+.++.+-... ...-....|.+|..+|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 221 123345556777777777888888887654321 11224677888999999999988888776654
Q ss_pred H
Q 041822 344 E 344 (500)
Q Consensus 344 ~ 344 (500)
.
T Consensus 342 l 342 (639)
T KOG1130|consen 342 L 342 (639)
T ss_pred H
Confidence 3
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.067 Score=43.31 Aligned_cols=148 Identities=10% Similarity=0.038 Sum_probs=91.6
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
...=+|++.++-....... -|+..--..+...+.+.|+..+|...|++... ++...+...+..+..+....+++..
T Consensus 67 ~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHH
Confidence 3344555555444333332 46666666788888888888888888887765 4555566666677777777788888
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEM 233 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 233 (500)
|...++.+-+.... ..++...-.+.+.+...|...+|+.-|+...+- -|+...-......+.+.|+.+++..
T Consensus 143 a~~tLe~l~e~~pa---~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 143 AQQTLEDLMEYNPA---FRSPDGHLLFARTLAAQGKYADAESAFEVAISY-YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhhcCCc---cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 88888877665422 223334555667777778888788777777752 2333333333334455565554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0054 Score=53.43 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=66.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhh
Q 041822 327 LIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDL 405 (500)
Q Consensus 327 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 405 (500)
..+.+++.+|+..|.+.++.... |.+.|..=..+|.+.|+++.|++--+..+.. .|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 55667777777777777776544 6666666677777777777777776666643 444 5677777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHH
Q 041822 406 GLNLWGYLIDRGFCPHGHALDL 427 (500)
Q Consensus 406 a~~~~~~~~~~~~~~~~~~~~~ 427 (500)
|.+.|++.++ +.|+-.+|-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 7777777776 4466555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.054 Score=46.25 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 041822 320 YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK----TRTVVMLMK 395 (500)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~ 395 (500)
+..++.-|-...-..+|...+..+.+. =...--.+..-|.+.|.+..|..-++.+++. -|+ ......++.
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAE 186 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHH
Confidence 333444444444455555544444332 1111112445566666666666666666653 233 233445555
Q ss_pred HHHHcCCHh
Q 041822 396 FFCVNFRVD 404 (500)
Q Consensus 396 ~~~~~~~~~ 404 (500)
++.+.|..+
T Consensus 187 ~y~~l~~~~ 195 (203)
T PF13525_consen 187 AYYKLGLKQ 195 (203)
T ss_dssp HHHHTT-HH
T ss_pred HHHHhCChH
Confidence 555555555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.013 Score=57.40 Aligned_cols=63 Identities=11% Similarity=-0.091 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 282 LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 282 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444566666666666655543 35555666666666666666666666555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0084 Score=53.06 Aligned_cols=100 Identities=6% Similarity=0.057 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
|...+..+.+.|++++|...|+.+.+..|+.. ...++..+...|...|++++|...|+.+...... .+....++-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--SPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CcchhHHHHHH
Confidence 44444444555666666666666666655432 2334445555566666666666666666554210 12233344444
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSR 207 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~ 207 (500)
...+...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555666666666666665553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0014 Score=44.04 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=23.7
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
.+.+.|++++|...|+++++..+-+...+..+..++...|++++|..+|++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444333344444444444444444444444444444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0017 Score=44.05 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=44.2
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIR 253 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 253 (500)
.+.|++++|+++|+++.+..|-+...+..+..++.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 45677788888888877766667777777888888888888888887777766 4554444433
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0094 Score=47.86 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL-----RGFRPSVVTY 250 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 250 (500)
+...++..+...|++++|..+.+.+....|-|...|..+|.++...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455566666677777777777777665566666777777777777777777766666543 2666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.02 Score=50.30 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=76.3
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD---VTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
.|-|...|-.|...|...|+++.|..-|.+..+-.++|...+..+..++....+ ..++..+|+++.+.. +-|+.+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 466777888888888888888888888888776555666666666665554332 357777777777663 2245555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 290 (500)
..|...+...|++.+|...|+.|.+.. |....+..++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 566667777888888888888887764 33334444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.016 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=9.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
.+...+...|++++|..++++..
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.029 Score=49.07 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=65.4
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041822 188 FCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAM 267 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 267 (500)
+.+.+++.+|+..|.+.++-.+-|.+-|..=..+|++.|.++.|.+-.+..+... +-...+|..|-.+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 4466777777777777777666677777777777777777777776666555542 112456677777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHH
Q 041822 268 RLFEEMERVACLPSLQTITT 287 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ 287 (500)
+.|++..+.. |+-.+|-.
T Consensus 170 ~aykKaLeld--P~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALELD--PDNESYKS 187 (304)
T ss_pred HHHHhhhccC--CCcHHHHH
Confidence 7777766643 66555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.035 Score=44.52 Aligned_cols=116 Identities=20% Similarity=0.313 Sum_probs=74.4
Q ss_pred hhcCChHHHHHHHHHhhcCC--CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 78 AAHSNGLKALEFFKFTLQHP--HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
...+++..+.+.++.+.... .+-++... ..-......-++... ......++..+...|++
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY--------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT-H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccCH
Confidence 45678888888888877632 12222111 122222233333222 13456677778899999
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh------CCCCCHHhHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS------RFAPNNKTMN 216 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~------~~~~~~~~~~ 216 (500)
++|....+.+... .|.+...|..+|.+|...|+...|.++|+.+.+ |+.|+..+-.
T Consensus 79 ~~a~~~~~~~l~~-----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 79 EEALRLLQRALAL-----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHH-----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 9999999999887 588999999999999999999999999998863 6788776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.15 Score=43.84 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRF-APNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
+.++..+.-.|.+.-..+++++..+.. +.++.....|++...+.||.+.|...|++..+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 445555555555555555555555432 34455555555555555555555555554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.23 Score=45.62 Aligned_cols=274 Identities=14% Similarity=0.106 Sum_probs=145.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
.....+.+..++..|+..+..++.. ++-+..-|..-+..+.-.|++++|..-.+.-.+..+.... .....-.++..
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k--~~~r~~~c~~a 129 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK--GQLREGQCHLA 129 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc--cccchhhhhhh
Confidence 3344556677888999999999885 3455556667777777778888877766666554433221 22233334444
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCCHHhHHHHH-HHHHhcCCH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RFAPNNKTMNILL-LGFKESGDV 228 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~l~-~~~~~~~~~ 228 (500)
.+...+|...++.- ..| ....|+..++.... .-+|.-.+|..+- .++.-.|+.
T Consensus 130 ~~~~i~A~~~~~~~-------------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSK-------------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred hHHHHHHHHHhhhh-------------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 44444444443311 000 11122222222221 1123333333332 233344555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDG--YCKKGCFGDAMRLFEEMERVACLPSLQTITTL-------------IHGAG 293 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------------l~~~~ 293 (500)
++|.+.-....+.. ....+..++++ +.-.++.+.|...|++.+..+ |+...-..+ .+-..
T Consensus 186 ~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~f 260 (486)
T KOG0550|consen 186 DEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAF 260 (486)
T ss_pred hhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHh
Confidence 55555544444331 11222222222 223455555555555555443 332211111 12345
Q ss_pred ccCCHHHHHHHHHhchhC---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHcCC
Q 041822 294 LVRNIHQARQLFDEMPKR---NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF---FGLMKSSG 367 (500)
Q Consensus 294 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~ 367 (500)
+.|++..|.+.|.+.+.. +.+++...|........+.|+.++|+.--+...+. |..-.-+++ .++...++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHH
Confidence 778888888888887664 34556666777777778888888888877776664 443322222 33445677
Q ss_pred hhHHHHHHHHHHhCC
Q 041822 368 LEGVCKLYDRMIEGK 382 (500)
Q Consensus 368 ~~~a~~~~~~~~~~~ 382 (500)
|++|.+-|++..+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888887776543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.041 Score=48.35 Aligned_cols=125 Identities=9% Similarity=0.044 Sum_probs=90.6
Q ss_pred HHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHH
Q 041822 198 RSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK---GCFGDAMRLFEEME 274 (500)
Q Consensus 198 ~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 274 (500)
..-++.-+...|-|...|-.|..+|...|+.+.|..-|....+.- .+|...+..+..++... ....++..+|+++.
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333444444567799999999999999999999999999988772 33566666666655433 33567889999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHH
Q 041822 275 RVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISS 326 (500)
Q Consensus 275 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 326 (500)
..+ +-|..+...+...+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 221 ~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 221 ALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 876 3456667777778899999999999999999874 233344444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.003 Score=43.61 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=51.1
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT 138 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 138 (500)
..++.+.+++++|++.++.+.... |.+...+.....++...|++++|.+.++...+..|+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 356778889999999999988863 567777888888889999999999999999888776544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.003 Score=43.02 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=24.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG-DVTAMEMFYHEM 238 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 238 (500)
+|..+...+...|++++|+..|++..+-.+.+...|..+..++.+.| ++++|.+.++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444322333444444444444444 344444444433
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0027 Score=43.24 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHhHhh
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR-YFDQAWELMSHVQRT 132 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 132 (500)
++..+...+...|++++|+..|+.+++.+ +.+...+..+..++...| ++++|++.++...+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34444444455555555555555555432 233444444555555555 455555555544443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.019 Score=50.89 Aligned_cols=97 Identities=9% Similarity=0.065 Sum_probs=58.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---NKTMNILLLGFKESGDVTAMEMFYHEMVLRG--FRPSVVTYNIRI 254 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li 254 (500)
.|...+..+.+.|++++|...|+.+.+..|-+ ...+..+..+|...|+++.|...|..+.+.- -......+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 35555555555677777777777777644333 2456666677777777777777777766541 111233344445
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 041822 255 DGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
..+...|+.++|.++|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5566667777777777766654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.32 Score=45.28 Aligned_cols=117 Identities=14% Similarity=0.206 Sum_probs=70.5
Q ss_pred HcCC-hhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHc---CCHhhHHHHHHHHHHCCCCCC----HhHHHHHHHH
Q 041822 364 KSSG-LEGVCKLYDRMIEGKFVPKTR----TVVMLMKFFCVN---FRVDLGLNLWGYLIDRGFCPH----GHALDLLVTG 431 (500)
Q Consensus 364 ~~g~-~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~ 431 (500)
+.|. -++|+++++.+.+-. .-|.. ++..+=.+|... ..+.+-..+-+.+.+.|++|- ...-|.+.++
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 3444 677888887776531 12222 222222333322 334444444444556677763 3344455443
Q ss_pred --HhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 432 --LCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 432 --~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
+...|++.++.-.-.-.. .+.|++.+|..+.-++....++++|..+++++
T Consensus 470 EyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 456888888765544443 46789999998888888888999998887765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.24 Score=42.60 Aligned_cols=131 Identities=14% Similarity=0.048 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH----
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH---- 290 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~---- 290 (500)
.+.++....-.|.+.-....+++.++...+-++.....|++.-.+.|+.+.|...|++..+..-+.|..+.+.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555555566666666666666654445556666666666666666666666666554333333333333221
Q ss_pred -HHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 291 -GAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 291 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.|.-.+++-.|...+.++...+ ..|+...|.-.-+..-.|+..+|.+..+.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333445555555555555443 113333332222223335555555555555554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.027 Score=43.42 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=20.4
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 041822 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV-RRRQVSEASYRMLQ 464 (500)
Q Consensus 418 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~ 464 (500)
..|+..+..+++.+|+..|++..|+++++...+ -++..+..+|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 334444444444444444444444444444433 23333444443333
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.014 Score=53.02 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCCC-CCCH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEM----EEKRIG-HDNVTYHTMFFGLMKSSGLEGVCKLYDRMI----EGKF-VPKT 387 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~-~p~~ 387 (500)
..|..|.+.|.-.|+++.|+..-+.- ++.|-+ .....+..+..++.-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34555666666667777766554321 111211 122345556666666677777777666532 2221 1123
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHHH----C-CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 388 RTVVMLMKFFCVNFRVDLGLNLWGYLID----R-GFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 388 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
.+..+|...|.-..+++.|+.++.+-+. . ...-....+-+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344556666666666777666654332 1 111234456677777777777777776655543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.49 Score=44.08 Aligned_cols=145 Identities=11% Similarity=0.138 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKR-IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV-VMLMK 395 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~ 395 (500)
.+|...++...+..-++.|..+|-+..+.| +.+++..+++++..++. |+..-|.++|+--... .||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 457778888888888999999999999888 67788899999988765 6888899999875543 4554443 35566
Q ss_pred HHHHcCCHhhHHHHHHHHHHCCCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 396 FFCVNFRVDLGLNLWGYLIDRGFCPH--GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLV 468 (500)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 468 (500)
-+...++-+.|..+|+..++. +..+ ..+|..+|.-=.+-|+...+..+=++|.+. -|...+......-|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 667789999999999976653 1222 468888998888889998888888887643 345544444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.12 Score=50.03 Aligned_cols=251 Identities=12% Similarity=0.125 Sum_probs=139.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCC
Q 041822 211 NNKTMNILLLGFKESGDVTAMEMF---------YHEMVLRGFRPSVVTYNIRIDGYCKKGCF--GDAMRLFEEMERVACL 279 (500)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~ 279 (500)
....+.+=+..|...|.+++|.++ |+.+... ..+...++..=++|.+..+. -+.+.-+++|+++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334445555666777777766554 2222222 12344556666777766553 3445556778888877
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH---------HHHC-CCC
Q 041822 280 PSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDE---------MEEK-RIG 349 (500)
Q Consensus 280 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------~~~~-~~~ 349 (500)
|+.... ...++-.|++.+|-++|.+--.. +..+.+|.....+|.|.+++.. |+++ ...
T Consensus 633 P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 633 PNDLLL---ADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred chHHHH---HHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 877543 34566778888888888654322 1223344444444444444321 1111 000
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHH------HHhCCCC---CCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 350 HDNVTYHTMFFGLMKSSGLEGVCKLYDR------MIEGKFV---PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~------~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
-+..-=.+....+...|+.++|..+.-+ +.+-+-+ .+..+...+...+.+...+..|.++|..|-+.
T Consensus 701 r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---- 776 (1081)
T KOG1538|consen 701 RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---- 776 (1081)
T ss_pred hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence 0000011234455566777777654321 1121112 22344444444555667777888888777542
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 421 HGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA-----------SYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
..+++.....++|.+|+.+-++..+ +.||.. -|.-.-.+|.++|+..+|..+.+.+...
T Consensus 777 -----ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 -----KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred -----HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2466677888999999988877653 233321 2445567788888888888887777544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.062 Score=51.51 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=106.9
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
..-.++++++++....-.-.+.+ +....+.+++.+-+.|..+.|+++.+.-. .-+....+.|+.+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHH
Confidence 34468888887776522211122 25668899999999999999998864322 1234456889999
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
.|.++.++. .+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+
T Consensus 336 ~A~~~a~~~----------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 336 IALEIAKEL----------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHCCCC----------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHhc----------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHH
Confidence 998876544 3566899999999999999999999999875 7778888888999988888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
.....| -+|....++.-.|+.++..+++.+-
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777765 2555566666678888888777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.55 Score=42.99 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=80.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (500)
+.+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++-.. + -+++.|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 44555666777888888888866652 46888899999999999999887775432 1 25688889999999
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWG 411 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 411 (500)
+.|+..+|..++.++ .+ ..-+..|.+.|++.+|.+.-.
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHH
Confidence 999999998888762 22 335666788888888876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.045 Score=42.21 Aligned_cols=50 Identities=8% Similarity=-0.045 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 041822 348 IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE-GKFVPKTRTVVMLMKFF 397 (500)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~ 397 (500)
..|+..+..+++.+|+..|++..|+++.+...+ -++..+..++..|++-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445555555555555555555555555555442 23444455555555544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.56 Score=43.51 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
+-..+.+++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3344455555666666666666666666544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.61 Score=42.99 Aligned_cols=255 Identities=9% Similarity=0.003 Sum_probs=146.5
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+.+...+.+|+..+....+. .+.+..-|..-...+...|++++|.--.+.-.+--+-......-.-+++...++.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~-----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM-----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh-----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHH
Confidence 44556666777766666665 3555666666666666666666666555443321011111222222233333333
Q ss_pred HHHHHHHH---------------HHHHCC-CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041822 229 TAMEMFYH---------------EMVLRG-FRPSVVTYNIR-IDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG 291 (500)
Q Consensus 229 ~~a~~~~~---------------~~~~~g-~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 291 (500)
.+|.+.++ ...... -+|...+|..+ ..++...|++++|...--...+.+ ....+...+++
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg 210 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRG 210 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcc
Confidence 33332222 111111 12333444433 235567799999988877777654 22334444443
Q ss_pred --HHccCCHHHHHHHHHhchhCCCCCCHhh-------------HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHH
Q 041822 292 --AGLVRNIHQARQLFDEMPKRNLKPDIGA-------------YNAMISSLIRCRDLNAAMELMDEMEEK---RIGHDNV 353 (500)
Q Consensus 292 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 353 (500)
+.-.++.+.+...|++.+..+ |+-.. +..=.+-..+.|.+..|.+.|.+.... +..|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 445678899999999888764 33222 222233456788999999999988765 3455566
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHhhHHHHHHHHHHCC
Q 041822 354 TYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT---VVMLMKFFCVNFRVDLGLNLWGYLIDRG 417 (500)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 417 (500)
.|.....+..+.|+..+|+.--++..+ .|..- |..-..++...+++++|.+-++...+..
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 676667777888999998887776653 33332 2222334455688899988888887653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.021 Score=39.29 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=19.1
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
+.+++++|.++++.+.+-.|.+...+.....++.+.|++++|...++...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33333333333333333223333333333333333333333333333333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.83 Score=42.40 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=55.9
Q ss_pred CCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc---CCCHHHHHHHHHHhh-hCCC
Q 041822 134 PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT---QKEMKEARSVFVKLL-SRFA 209 (500)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~-~~~~ 209 (500)
+...+..+...++-.|....+++...++++.+....... ......+-....-++-+ .|+.++|.+++..++ +...
T Consensus 136 ~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 136 PELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred HhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 445555666667777888888888888888886541100 01122222233444555 788888888888854 4566
Q ss_pred CCHHhHHHHHHHHH
Q 041822 210 PNNKTMNILLLGFK 223 (500)
Q Consensus 210 ~~~~~~~~l~~~~~ 223 (500)
++..+|..+...|-
T Consensus 215 ~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 215 PDPDTLGLLGRIYK 228 (374)
T ss_pred CChHHHHHHHHHHH
Confidence 77788877777664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.4 Score=44.03 Aligned_cols=340 Identities=11% Similarity=0.060 Sum_probs=172.6
Q ss_pred CCCCCHHhH-----HHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc
Q 041822 98 HFTPTPDAF-----EKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG 172 (500)
Q Consensus 98 ~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 172 (500)
|++.+..-| ..+++-+...+.+..|+++-+.+...... ....+......+.+..+ ..-..+++.+.+.--.
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d-~~d~~vld~I~~kls~- 502 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSD-KMDEEVLDKIDEKLSA- 502 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccC-ccchHHHHHHHHHhcc-
Confidence 666666655 35677778889999999998887653222 13455555555555432 1223344444443211
Q ss_pred ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-C--C--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 173 IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-R--F--APNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSV 247 (500)
Q Consensus 173 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~--~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 247 (500)
.-....+|..+.+-....|+.+.|..+++.=.. + + --+..-+...+.-+.+.|+.+-...++-.+.+.- +.
T Consensus 503 -~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 503 -KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred -cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 113556788888888899999999988876542 1 1 1233445666677777788777777766665431 12
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc-----hhCCCCCCHhhHHH
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEM-----PKRNLKPDIGAYNA 322 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~ 322 (500)
..+...+ .+...|..+|.+..+.. |..+ +-+.|-...+....-.+.-+- ...|..|+. ..
T Consensus 579 s~l~~~l------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~ 643 (829)
T KOG2280|consen 579 SSLFMTL------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KT 643 (829)
T ss_pred HHHHHHH------HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HH
Confidence 2222111 23344555555544321 1111 111122222221111111100 011222222 22
Q ss_pred HHHHHHhcCC----------HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 041822 323 MISSLIRCRD----------LNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVV 391 (500)
Q Consensus 323 li~~~~~~g~----------~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 391 (500)
....+.+... ..+-+.+.+.+..+ |......+.+--+.-+...|+-.+|.++-.+.+ -||...|.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 2223333222 11122222222222 222233444455556666777777777666554 56777777
Q ss_pred HHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 041822 392 MLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQAN 471 (500)
Q Consensus 392 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 471 (500)
.=+.+++..+++++-+++-+... .+.-|.-.+.+|.+.|+.+||.+++.+.. |.. -...+|.+.|
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~ 784 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVG 784 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHHhc
Confidence 66777777777765444433322 12345556677777777777777776552 111 2344555556
Q ss_pred chhHHHHH
Q 041822 472 ANEKLEDL 479 (500)
Q Consensus 472 ~~~~~~~~ 479 (500)
++.+|.++
T Consensus 785 ~~~eAad~ 792 (829)
T KOG2280|consen 785 DVKEAADL 792 (829)
T ss_pred cHHHHHHH
Confidence 55555544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.08 Score=45.97 Aligned_cols=104 Identities=12% Similarity=0.165 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCC-ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSL-LTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
|+..+.. .+.|++..|...|....+..|+. .+..++-.|..++...|++++|..+|..+.+.... .+.-++++--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~--s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK--SPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC--CCCChHHHHHH
Confidence 4444443 34555666666666666655443 23344455666666666666666666666554311 23334555556
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCH
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNN 212 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~ 212 (500)
..+..+.|+.++|...|+++.+.+|-+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 6666666666666666666665544433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.58 Score=39.91 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=30.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhchhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041822 285 ITTLIHGAGLVRNIHQARQLFDEMPKRN---LKPDIGAYNAMISSLIRCRDLNAAMELM 340 (500)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (500)
|...|-.+....++..|.+.++.-.+.+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444445555566666666666633322 223455666666665 446666655554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.29 Score=47.74 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=90.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHH------HHHHHHHHh----ccccHHHHHHHHHHHHHHHhcccc
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKS------MSIMLSRIS----KFQSYEETLEAFDRMEREIFVGIR 174 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~ 174 (500)
.+..+++..+=.||-+.+++.+.+..+. ++....-+ |...+..+. .....+.|.++++.+... .
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-----y 263 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-----Y 263 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-----C
Confidence 3445666666666767776666665542 22222211 111122222 245667777777777665 2
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--R--FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
|.+..-.-.-.+.+...|++++|++.|+.... . -+.....+--+.-.+.-..+|++|...|..+.+..- =+..+|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHH
Confidence 33333333444556667777777777776542 1 122334455556667777888888888888876521 123333
Q ss_pred HHHHH-HHHhcCCh-------hHHHHHHHHHHH
Q 041822 251 NIRID-GYCKKGCF-------GDAMRLFEEMER 275 (500)
Q Consensus 251 ~~li~-~~~~~g~~-------~~a~~~~~~m~~ 275 (500)
.-+.. ++...|+. ++|.++|.+...
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33332 23345666 788888877643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.45 Score=46.44 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=85.7
Q ss_pred HHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc--ccCCChhhHHHHHHHHHc----CCCHH
Q 041822 122 AWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG--IRKFGSEEFNVLLQAFCT----QKEMK 195 (500)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~----~~~~~ 195 (500)
..-+|.-+...-| ..+..+++..+=.|+-+.+++.+.+..+..... ....-.-.|+.++..++. ....+
T Consensus 176 G~G~f~L~lSlLP-----p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSLLP-----PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHhCC-----HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3455666665433 246778888888899999999998765432000 000011134444444443 34567
Q ss_pred HHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041822 196 EARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG---FRPSVVTYNIRIDGYCKKGCFGDAMRLFEE 272 (500)
Q Consensus 196 ~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (500)
.|.++++.+.++.|-+..-.-.-.+.+...|+++.|.+.|+...... -+.....+--+.-.+.-.++|++|.+.|..
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 77777777776655444444444556666777777777777654320 011222233344445556777777777777
Q ss_pred HHHcC
Q 041822 273 MERVA 277 (500)
Q Consensus 273 m~~~~ 277 (500)
+.+..
T Consensus 331 L~~~s 335 (468)
T PF10300_consen 331 LLKES 335 (468)
T ss_pred HHhcc
Confidence 76643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.14 Score=48.02 Aligned_cols=61 Identities=20% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH----HhHHHHHHHHHcCCChHHHHHHHHHhHh
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTP----DAFEKTLHILARMRYFDQAWELMSHVQR 131 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 131 (500)
..++-+...+...|++++|+..|+.+++.. |+. .+|..+..+|...|++++|++.+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444555555555555544431 221 1244444555555555555555544444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.076 Score=46.00 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=60.9
Q ss_pred CHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChhHHHHH
Q 041822 211 NNKTMNILLLGFKE-----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG----------------CFGDAMRL 269 (500)
Q Consensus 211 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----------------~~~~a~~~ 269 (500)
|..+|-..+..+.. .+.++-....+..|.+.|+.-|..+|+.|++.+-+.. +-+=++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444432 2344555555566666666666666666666554321 12346788
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHhchh
Q 041822 270 FEEMERVACLPSLQTITTLIHGAGLVRN-IHQARQLFDEMPK 310 (500)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 310 (500)
+++|...|+-||..+-..+++++.+.+- ..+..++.-.|.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 8888888888888888888888887776 3444555444433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.016 Score=40.47 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=12.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
+|+.+...|...|++++|++.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555544443
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.12 Score=49.70 Aligned_cols=131 Identities=9% Similarity=0.009 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
.-.+.++..+.+.|..+.|+++-++-. .-.....+.|+++.|.++.++ ..+...|..|.+...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 345666666666666666666533321 223444556666666654322 125556666666666
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 041822 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAME 338 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 338 (500)
+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.....| -++....++.-.|++++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665443 3444445556666666665555555544 13444444555566666665
Q ss_pred HHH
Q 041822 339 LMD 341 (500)
Q Consensus 339 ~~~ 341 (500)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.85 Score=39.44 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHF-TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL 139 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 139 (500)
.|...+++..... .+.|++++|.+.|+.+..+..+ +-...+...++-++-+.++++.|+..+++..+..|..++.
T Consensus 32 ~p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 32 LPASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 3555555554443 3566777777777766654322 2233344455555566677777777777776666665553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.3 Score=41.44 Aligned_cols=426 Identities=11% Similarity=0.090 Sum_probs=229.1
Q ss_pred CCCCCchhhhhhCCCCCC-CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHH
Q 041822 46 PDQPLHPTLLQHLPQTTP-LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWE 124 (500)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 124 (500)
|+..++....+....... +++-..|-.|++.+..++..++..+.++++.. .+|--+.+|...++.-....++.....
T Consensus 20 ~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~ 97 (660)
T COG5107 20 PSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVES 97 (660)
T ss_pred cccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHH
Confidence 444455444444332222 23344456777888888899888899998876 355566777777777777788999999
Q ss_pred HHHHhHhhCCCCccHHHHHHHHHHHhccccH------HHHHHHHHHHHHHHhccccCCChhhHHHHHHHH---HcCCCHH
Q 041822 125 LMSHVQRTHPSLLTLKSMSIMLSRISKFQSY------EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF---CTQKEMK 195 (500)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~ 195 (500)
+|.+.... ..+...|...+....+.+.. ....+.|+-... ..+..+.+...|+..+..+ -..|.|+
T Consensus 98 lf~rCL~k---~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~--~~~~e~~s~~~W~ey~~fle~~~~~~kwE 172 (660)
T COG5107 98 LFGRCLKK---SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLG--CAIFEPQSENYWDEYGLFLEYIEELGKWE 172 (660)
T ss_pred HHHHHHhh---hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHh--cccccccccchHHHHHHHHHhccccccHH
Confidence 99888774 23445565555543333211 112233333332 2232345555666655443 2334444
Q ss_pred ------HHHHHHHHhhhCCCCCH-------HhHHHHHHHHHh---cCC----HHHHHHHHHHHHHC--CCC----CCHHH
Q 041822 196 ------EARSVFVKLLSRFAPNN-------KTMNILLLGFKE---SGD----VTAMEMFYHEMVLR--GFR----PSVVT 249 (500)
Q Consensus 196 ------~A~~~~~~m~~~~~~~~-------~~~~~l~~~~~~---~~~----~~~a~~~~~~~~~~--g~~----~~~~~ 249 (500)
.....+.+|+.----+. ..|..=++-... .|+ +-.|.+.+++.... |+. .+..+
T Consensus 173 eQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt 252 (660)
T COG5107 173 EQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRT 252 (660)
T ss_pred HHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhh
Confidence 44455555553100011 111111111110 011 23455555555432 332 12222
Q ss_pred HHH-----------HHHHHHhc-----CC-hh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 250 YNI-----------RIDGYCKK-----GC-FG-DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 250 ~~~-----------li~~~~~~-----g~-~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+|. .|+-=... |+ .. ...-++++.... +.-....|----..+...++-+.|.+....-.+.
T Consensus 253 ~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~ 331 (660)
T COG5107 253 ANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM 331 (660)
T ss_pred hccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC
Confidence 222 22211110 11 11 111122222221 1223444444444556677777777776654443
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHH
Q 041822 312 NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE--------------KRI---------------GHDNVTYHTMFFGL 362 (500)
Q Consensus 312 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~ 362 (500)
.|+...+ +-..|--..+.+.....|+...+ .+. ..-...|.+.+.+.
T Consensus 332 --spsL~~~--lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v 407 (660)
T COG5107 332 --SPSLTMF--LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYV 407 (660)
T ss_pred --CCchhee--HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHH
Confidence 2221111 11111122222222222211100 001 01245677778888
Q ss_pred HHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhH-HHHHHHHHhcCCCHHH
Q 041822 363 MKSSGLEGVCKLYDRMIEGK-FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA-LDLLVTGLCSRGRWEE 440 (500)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~ 440 (500)
.+....+.|..+|-+..+.+ +.++...+++++.-++ .|+...|..+|+.-...- ||... .+-.+.-+.+-++-+.
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~n 484 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEEN 484 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHHH
Confidence 88888999999999999988 6677888888887665 578888999998766642 34333 3456666778899999
Q ss_pred HHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 441 AFECSKQMLVRRRQVS--EASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 441 A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
|..+|+...++ +.-+ ...|..++..=.+-|+...+..+-+.+....
T Consensus 485 araLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 485 ARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 99999976643 1122 4678889998899999988888777776553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.022 Score=39.79 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLR----GF-RPS-VVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
.+|+.+...|...|++++|...|++..+. |- .|+ ..+++.+..+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666666666666666666655533 11 111 3345555566666666666666665543
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.47 Score=36.20 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 354 TYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
.....+..+...|.-+...+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555555555555555555554322 45555555555666666666666666666555553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.89 Score=39.35 Aligned_cols=186 Identities=13% Similarity=0.128 Sum_probs=106.4
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
|-...|+. +..-...|++++|.+.|+.+...+|..+ +..+...++-++-+.++++.|+..+++....-. ..|| .
T Consensus 33 p~~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP---~~~n-~ 107 (254)
T COG4105 33 PASELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP---THPN-A 107 (254)
T ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CCCC-h
Confidence 33344444 4445688999999999999999876543 556777788888999999999999999988742 1222 3
Q ss_pred hHHHHHHHHHcC-------CCHHH---HHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 041822 180 EFNVLLQAFCTQ-------KEMKE---ARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVT 249 (500)
Q Consensus 180 ~~~~ll~~~~~~-------~~~~~---A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 249 (500)
.|..-|.+++.- ++... |..-|+..+++.|-+..+ ..|..-...+... =...
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya--------------~dA~~~i~~~~d~----LA~~ 169 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA--------------PDAKARIVKLNDA----LAGH 169 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHH----HHHH
Confidence 354455554422 33333 444444444444433322 1222211111111 0001
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 250 YNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL---QTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
=..+.+.|.+.|.+..|..-+++|.+. .+-+. ...-.+..+|...|-.++|.+.-.-+..
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 122445667777777777777777765 22222 2344556667777777776665544443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.2 Score=40.41 Aligned_cols=131 Identities=14% Similarity=0.170 Sum_probs=74.4
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC-
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIR--CR----DLNAAMELMDEMEEKRI---GHDNVTYHTMFFGLMKSSG- 367 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 367 (500)
+++...+++.|.+.|..-+..+|-+....... .. ...+|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566677888888877776666554333333 11 35667788888887632 2344455555433 2233
Q ss_pred ---hhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC--HhhHHHHHHHHHHCCCCCCHhHHHHHHH
Q 041822 368 ---LEGVCKLYDRMIEGKFVPKT--RTVVMLMKFFCVNFR--VDLGLNLWGYLIDRGFCPHGHALDLLVT 430 (500)
Q Consensus 368 ---~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~ 430 (500)
.+.+..+|+.+.+.|...+. .....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 34556677777776655542 233333333222211 4567777788888887777777765543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.53 Score=37.82 Aligned_cols=123 Identities=12% Similarity=0.099 Sum_probs=51.8
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCCHH-hHHHH--HHHHHhc
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNK-TMNIL--LLGFKES 225 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~~~~-~~~~l--~~~~~~~ 225 (500)
++.+..++|+..|..+.+.+.. ...+-.-........+.|+...|...|+++-.. -.|-.. -..-| ...+...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g---~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYG---SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 3444455555555555444321 112222333344444555555555555555431 111111 11111 1122344
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|.++.+..-.+-+...|-+.-...-..|.-+-.+.|++.+|.++|.++..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555555444444433333333334444444555555555555555544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.21 Score=40.01 Aligned_cols=91 Identities=8% Similarity=-0.094 Sum_probs=59.5
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF 188 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 188 (500)
...-+-..|++++|..+|+-+...++.. ...+..+..++-..+++++|+..|...-.. .+.|...+-....++
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~~~dp~p~f~agqC~ 115 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTL-----LKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccCCCCccchHHHHH
Confidence 3334456677777777777777654443 345666777777777777777777665444 234555566667777
Q ss_pred HcCCCHHHHHHHHHHhhh
Q 041822 189 CTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~ 206 (500)
...|+.+.|...|....+
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 777777777777777664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.32 Score=45.83 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=40.9
Q ss_pred CCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 135 SLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS---EEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+..+...+..+..+|.+.|++++|+..|++..+.. |.+. .+|..+..+|...|+.++|++.+++..+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455666666666666666666666666665542 2233 2366666666666666666666666654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.35 Score=37.77 Aligned_cols=75 Identities=12% Similarity=0.008 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC-CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFT-PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL 139 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 139 (500)
.|+..+++.-.. ..+.|++.+|.+.|+.+..+..+. -...+...++.++-+.|++++|...+++..+.+|..+..
T Consensus 8 ~~~~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 455556655444 356788888888888888764222 233456677888888888888888888888888776653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.5 Score=39.52 Aligned_cols=125 Identities=13% Similarity=0.158 Sum_probs=63.4
Q ss_pred hhcCChHHHHHHHHHhhcCC-CCCCCHH-----hHHHHHHHHHcCC-ChHHHHHHHHHhHhh----C---CCC-----cc
Q 041822 78 AAHSNGLKALEFFKFTLQHP-HFTPTPD-----AFEKTLHILARMR-YFDQAWELMSHVQRT----H---PSL-----LT 138 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~---~~~-----~~ 138 (500)
.+.|+.+.|.-++.++.... ...|+.. .+-.+.......+ +++.|..++++..+. . ... ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788999999998887643 2233322 1122222233445 888887777766543 1 111 11
Q ss_pred HHHHHHHHHHHhccccHHH---HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 041822 139 LKSMSIMLSRISKFQSYEE---TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR 207 (500)
Q Consensus 139 ~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 207 (500)
..++..++.+|...+..+. |..+++.+... .+....++-.-++.+.+.++.+.+.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-----~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-----YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-----CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2334445555555544333 33333333332 2223444444555555556666666666666653
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.18 Score=40.36 Aligned_cols=87 Identities=6% Similarity=-0.043 Sum_probs=54.6
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+-..|++++|..+|+-+... .+.+..-|..|..++-..+++++|...|.....-.+-|...+.....++...|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~-----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY-----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44567777777777766654 2445555666666666667777777777665542233444455566666667777
Q ss_pred HHHHHHHHHHHH
Q 041822 229 TAMEMFYHEMVL 240 (500)
Q Consensus 229 ~~a~~~~~~~~~ 240 (500)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777776666655
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.5 Score=41.56 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh-----------hHHHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG-----------AYNAM 323 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l 323 (500)
..+.+...+.-|-++|..|-+. ..+++.....+++++|..+-+...+. .||+. -|...
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred HHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHH
Confidence 3333445555566666555432 23444455556666666655554442 22221 13334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 041822 324 ISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
-.+|.+.|+..+|..+++++...
T Consensus 824 qkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 824 QKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHhcchHHHHHHHHHhhhh
Confidence 45666777777777777766543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.75 Score=35.15 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=75.0
Q ss_pred ccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 041822 294 LVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCK 373 (500)
Q Consensus 294 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (500)
-.|..++..++..+..... +..-+|.+|--....-+-+-..++++.+-+. .|... .|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHHHH
Confidence 3466777777776666542 4455555554444444444444444433321 22221 233333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 041822 374 LYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR 453 (500)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (500)
.+-.+ ..+...+...+......|+-++-.++...+.+.+ .+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33211 1233445566777788888888888888887633 57777777888999999999999999999888876
Q ss_pred C
Q 041822 454 Q 454 (500)
Q Consensus 454 ~ 454 (500)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.16 Score=38.51 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=65.6
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCC--HHhHHHHHHHHH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RFAPN--NKTMNILLLGFK 223 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~--~~~~~~l~~~~~ 223 (500)
+.+..|+.+.|++.|.+.... .|.+..+||.-..++--.|+.++|++-+++.++ |.+.. -..|..-...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 466778888888888887765 577888888888888888888888888888876 32211 123444445566
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 041822 224 ESGDVTAMEMFYHEMVLRG 242 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g 242 (500)
..|+.+.|..=|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888888777776
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.4 Score=37.63 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEKR---IGHDNVTYHTMFFGLMKSSGLEGVCKLY 375 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (500)
.|...|-.|.-..++..|...++.-.+.+ -.-+..+...|+.+| ..|+.+++.++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 45566666777778888888888744432 122556677777777 456777666554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.1 Score=35.52 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=16.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
+..+.+.+.......+++.+...|. .+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3333333444444444444444331 233344444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.47 Score=41.35 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH-HHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT---PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL-KSMS 143 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 143 (500)
-.|+.-..+ ...|++..|...|...++. +|-+ +..+--+..++...|++++|..+|..+.+..|..+.. ..+.
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 366666565 4678899999999988874 3433 3456678999999999999999999999988777654 6788
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
.+..+..+.|+.++|..+|+++.++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8888899999999999999999887
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.15 Score=44.19 Aligned_cols=105 Identities=10% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh
Q 041822 244 RPSVVTYNIRIDGYCKK-----GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG 318 (500)
Q Consensus 244 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 318 (500)
+-|..+|...+..+... +.++-.-..++.|.+.|+.-|..+|+.|++.+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 44777777777766543 5556666667778888888888888888776543221 1111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (500)
++....-.|- .+-+-++.++++|...|+.||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1234456667777777777777776677777665543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.87 Score=34.71 Aligned_cols=91 Identities=15% Similarity=0.052 Sum_probs=72.0
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHH---HHHHHHhcC
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR-GFRPSVVTYNI---RIDGYCKKG 261 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~---li~~~~~~g 261 (500)
-++...|+.+.|++.|.+...-.|.+...||.-..++.-.|+.++|..=+++..+. |-+ +.....+ -...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 35678899999999999998877789999999999999999999999988888876 322 3333332 234566789
Q ss_pred ChhHHHHHHHHHHHcC
Q 041822 262 CFGDAMRLFEEMERVA 277 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~ 277 (500)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999999998887766
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.2 Score=35.21 Aligned_cols=127 Identities=10% Similarity=0.059 Sum_probs=72.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
....++..+.+.+.......+++.+.+....+...++.++..|++.+. ......+.. . .+......+++.|.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 345667777777778888888887776434667778888888876543 333333331 1 133334446666777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV-RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLI 328 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 328 (500)
.+.++++..++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777766533 11222222222 6666666666541 14445666555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.4 Score=39.02 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=93.6
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF 188 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 188 (500)
-.......|++.+|..+|.......|.. ......+..+|...|+.+.|..++..++.... .........-|..+
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----~~~~~~l~a~i~ll 213 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ----DKAAHGLQAQIELL 213 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccch----hhHHHHHHHHHHHH
Confidence 3444567788888888888887765554 34556677788888888888888887765431 11111122234444
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR--GFRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
.+.....+...+-.+.-. .+.|...-..+...+...|+.+.|...+-.+.++ |.. |...-..++..+.-.|.-+.+
T Consensus 214 ~qaa~~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 214 EQAAATPEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHhcCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 444444443333333332 3447777777788888888888777766666554 433 556667777777766654444
Q ss_pred HHHH
Q 041822 267 MRLF 270 (500)
Q Consensus 267 ~~~~ 270 (500)
...+
T Consensus 292 ~~~~ 295 (304)
T COG3118 292 VLAY 295 (304)
T ss_pred HHHH
Confidence 3333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.2 Score=34.90 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=77.4
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
+..+-.-.....+.|++++|.+.|+.+....|... ...+-..++.+|-+.+++++|...++++.+..... ...+-..|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h-p~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH-PNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-CCccHHHH
Confidence 34444555566788999999999999999876553 55677789999999999999999999998876432 12222223
Q ss_pred HHHHHHHHc--------------CCCHHHHHHHHHHhhhCCCCCHH
Q 041822 182 NVLLQAFCT--------------QKEMKEARSVFVKLLSRFAPNNK 213 (500)
Q Consensus 182 ~~ll~~~~~--------------~~~~~~A~~~~~~m~~~~~~~~~ 213 (500)
..-+..+.. .+....|..-|+++++..|-+..
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 222222221 12389999999999987665543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.1 Score=40.56 Aligned_cols=131 Identities=14% Similarity=0.228 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCC----HHHHHHHHHhchhCCC---CCCHhhHHHHHHHHHhcCC-
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGL--VRN----IHQARQLFDEMPKRNL---KPDIGAYNAMISSLIRCRD- 332 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 332 (500)
+++.+.+++.|.+.|..-+..+|-+..-.... ..+ ...|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788899999988888777664333333 222 5678899999998753 3455667766654 3343
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc-CC--hhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041822 333 ---LNAAMELMDEMEEKRIGHDNV-TYHTMFFGLMKS-SG--LEGVCKLYDRMIEGKFVPKTRTVVMLMK 395 (500)
Q Consensus 333 ---~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 395 (500)
.+.++.+|+.+.+.|+..+.. -+.+-+-++... .+ ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 366778888888877765433 222222233221 11 4578899999999999988777765443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.62 Score=42.91 Aligned_cols=96 Identities=17% Similarity=0.043 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVV-TYNIRIDG 256 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~ 256 (500)
..+++.+.-++.+.+++..|++.-+..+.-.++|+....-=..++...|+++.|+..|+.+++. .|+.. .-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 4467778888888888888888888888766778888888888888888888888888888876 44433 33444444
Q ss_pred HHhcCCh-hHHHHHHHHHHH
Q 041822 257 YCKKGCF-GDAMRLFEEMER 275 (500)
Q Consensus 257 ~~~~g~~-~~a~~~~~~m~~ 275 (500)
--+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 4443333 334677777754
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.4 Score=38.22 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=14.0
Q ss_pred HcCCChHHHHHHHHHhHhh
Q 041822 114 ARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~ 132 (500)
.+.|+++.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4667888888888777664
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.4 Score=35.49 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=64.2
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCC-CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH--HHHHHHHHHHhcccc
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTP-TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL--KSMSIMLSRISKFQS 154 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 154 (500)
++.+.+++|+.-|..+.+. |... ..-..-......+..|+...|...|+++....+.+.-. ..-....-.+..+|.
T Consensus 69 A~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4556667777777766664 2211 11222344455566677777777777766543221111 111111223455666
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 155 YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+++.....+-+...+ .+.....-..|.-+-.+.|++.+|.+.|..+.+
T Consensus 148 y~dV~srvepLa~d~----n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDG----NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCC----ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666555554332 333344445555566666666666666666654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.6 Score=35.47 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=14.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041822 236 HEMVLRGFRPSVVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 236 ~~~~~~g~~~~~~~~~~li~~~~~~g~~ 263 (500)
.-+.+.|++|+...+..+++.+.+.|++
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3334445555555555555555555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=2.7 Score=37.85 Aligned_cols=114 Identities=11% Similarity=-0.038 Sum_probs=47.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC---CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR---NLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.....++++... +++....+-..+..++..+|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4444444444444432 2333444444444444445444444444444332 11111122222233334445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
+.-++..+.+.. |...-.+....+-..|+..++.++..
T Consensus 196 k~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 196 KQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHH
Confidence 554444433221 33334444444444555555555443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.91 E-value=3.1 Score=38.36 Aligned_cols=310 Identities=9% Similarity=0.011 Sum_probs=193.4
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHH--HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH--HhccccHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHIL--ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR--ISKFQSYE 156 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~ 156 (500)
..|..+.+.|..-.+..| |..+-..+ +..|+-..|.++-.+..+. -..+...+..++.+ -.-.|+++
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchH
Confidence 355666666665554432 33333333 4568888888887776642 11233344445443 33469999
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
.|.+-|+.|...- ....--...|.-..-+.|..+.|.+.-+..-..-+.=...+...+...+..|+|+.|+++++
T Consensus 138 ~Ar~kfeAMl~dP-----EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 138 DARKKFEAMLDDP-----ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHHHHhcCh-----HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999996431 11111123344444567888888888888776556667888999999999999999999998
Q ss_pred HHHHC-CCCCCHHH--HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHhch
Q 041822 237 EMVLR-GFRPSVVT--YNIRIDGYCK---KGCFGDAMRLFEEMERVACLPSLQT-ITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 237 ~~~~~-g~~~~~~~--~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
.-.+. -+.++..- -..|+.+-.. .-+...|...-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 76654 23444322 2233332221 2345555555444444 3455432 2234567889999999999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHH----HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 041822 310 KRNLKPDIGAYNAMISSLIRCRDLNAAM----ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385 (500)
Q Consensus 310 ~~~~~~~~~~~~~li~~~~~~g~~~~a~----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 385 (500)
+....|+ ... +..+.+.|+..... +-+..|+.. +....-.+..+-...|++..|..--+.... ..|
T Consensus 291 K~ePHP~--ia~--lY~~ar~gdta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~p 360 (531)
T COG3898 291 KAEPHPD--IAL--LYVRARSGDTALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAP 360 (531)
T ss_pred hcCCChH--HHH--HHHHhcCCCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCc
Confidence 8754443 333 23345666542211 112333332 556666677888888999888776666554 378
Q ss_pred CHHHHHHHHHHH-HHcCCHhhHHHHHHHHHHC
Q 041822 386 KTRTVVMLMKFF-CVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 386 ~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~ 416 (500)
....|..|...- ...|+-.++...+.+.++.
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888887777665 4459999999999888874
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.90 E-value=4.1 Score=39.78 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHH-cCCChHHHHHHHHHhHhh-CCCCccHHHHHHHHH
Q 041822 70 ENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILA-RMRYFDQAWELMSHVQRT-HPSLLTLKSMSIMLS 147 (500)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~ 147 (500)
|...+..-.+-|..+.+.++|++..+ +++.+...|...+..+. ..|+.+...+.|+..... +.+-.+...|...+.
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 44444444556677777777777776 56667776666555544 346667777777777663 333345556666666
Q ss_pred HHhccccHHHHHHHHHHHHHH
Q 041822 148 RISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~ 168 (500)
.-..++++.....+++++.+-
T Consensus 160 ~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccccHHHHHHHHHHHHhh
Confidence 666677777777777776543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.098 Score=31.63 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+..+...|.+.|++++|+++|++.++..|-|...+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 4444555555555555555555555444444444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.81 E-value=6.6 Score=41.72 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=56.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh--hHHHHHHHHHh
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG--AYNAMISSLIR 329 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~ 329 (500)
+..+.+...+.+++|.-.|+..-+. .-.+.+|...|++++|..+..++.... +.. +-..|+.-+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHH
Confidence 3334444556677776666654331 234566677777777777766654421 111 22456666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 330 CRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 330 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
.++.-+|-++..+.... - .-.+..|++...+++|.++-.
T Consensus 1012 ~~kh~eAa~il~e~~sd----~----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD----P----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred cccchhHHHHHHHHhcC----H----HHHHHHHhhHhHHHHHHHHHH
Confidence 77776666666555442 1 112334444555555555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.9 Score=42.43 Aligned_cols=176 Identities=11% Similarity=0.099 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL----LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
...-+..+++...++.|..+-+.-.. |..+...+ ...+.+.|++++|...|-+-+.. +.|. .+|.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 34455556666666666655444321 33333333 33344667777777666554432 1222 23444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 041822 257 YCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 336 (500)
|....+..+-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 4555566666667777777775 345555677777777777777666665544 3321 11234455555666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041822 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
..+-..... +......++ -..|++++|++++..+
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 655443332 233333333 3457777777777654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.9 Score=34.99 Aligned_cols=135 Identities=10% Similarity=0.052 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 267 MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 267 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.++++.+.+.+++|+...+..+++.+.+.|++.... ++.+.++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 455666667788888888888888888888766544 34445555555544444433322 223333333344332
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH
Q 041822 347 RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 415 (500)
=...+..++..+...|++-+|+++.+...... .++. ..++.+..+.+|...-..++.-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11234556677778888888888877653221 1222 3356666666666555555555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.56 E-value=3.1 Score=36.86 Aligned_cols=142 Identities=9% Similarity=0.057 Sum_probs=88.3
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-HHhHHHHHHHHHhcC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN-NKTMNILLLGFKESG 226 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~l~~~~~~~~ 226 (500)
.....|++.+|...|+..... .+.+...--.+..+|...|+.+.|..++..+......+ ......-|..+.+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~-----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA-----APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh-----CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 456778888999988888777 45667778888889999999999999998887422211 112222334444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVAC-LPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~ 296 (500)
...+...+-.+.... +-|...-..+...+...|+.+.|++.+-.+.+++. .-|...-..++..+.-.|
T Consensus 218 ~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444443444433 22666666777888888888888887776665421 123333444444444333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.15 Score=30.76 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCC
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSL 136 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 136 (500)
.++..+...+.+.|++++|+++++++.+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345566666777777777777777777766553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.75 Score=40.79 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=57.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 041822 317 IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE-----GKFVPKTRTVV 391 (500)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 391 (500)
..++..++..+..+|+.+.+.+.+++.....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346677777888888888888888888777554 777888888888888888888888877653 56677666554
Q ss_pred HHHHH
Q 041822 392 MLMKF 396 (500)
Q Consensus 392 ~ll~~ 396 (500)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=4.1 Score=38.75 Aligned_cols=74 Identities=9% Similarity=0.011 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 371 VCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 371 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
|.++-++..+.+ .-|+.....+..+....++++.|...|++....+ || ..+|-.....+.-.|+.++|.+.+++
T Consensus 323 a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 323 ALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444332 2233433333333344444445555554444432 22 22222222333334455555544444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.18 E-value=2.4 Score=33.97 Aligned_cols=74 Identities=16% Similarity=0.007 Sum_probs=39.2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
++..-.+.++.+++..+++.+... .|.....-..-...+...|+|.+|..+|+++.++ .|.......|+..|..
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL-----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL-----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-APGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHH
Confidence 333445566777777777766654 2333333333344456677777777777776543 2333333344444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=3 Score=35.07 Aligned_cols=183 Identities=14% Similarity=0.091 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (500)
|-..-|.--|...+... |--+..||.+.-.+...|+++.|.+.|+...+.+|.. +....+.-+..| --|++.-|.+
T Consensus 79 GL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~Y-Y~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALY-YGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeee-ecCchHhhHH
Confidence 33334444444444431 3345678888888888888999998888888876543 344444444433 4578888877
Q ss_pred HHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
-|-..-..+. ..|-...|--+. -..-++.+|..-+.+--++. |..-|...|-.+.- |++ ..+.+++.+..
T Consensus 155 d~~~fYQ~D~---~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yL-gki-S~e~l~~~~~a 224 (297)
T COG4785 155 DLLAFYQDDP---NDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYL-GKI-SEETLMERLKA 224 (297)
T ss_pred HHHHHHhcCC---CChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHH-hhc-cHHHHHHHHHh
Confidence 7766655421 111122232222 23446666665554443332 33344333333221 111 11112222222
Q ss_pred CCC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 241 RGF------RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 241 ~g~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
..- +.=..||--+.+.+...|+.++|..+|+-....+
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 210 0114567778888888899999998888877654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.12 E-value=4.3 Score=36.64 Aligned_cols=117 Identities=9% Similarity=0.057 Sum_probs=61.6
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHH
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR---GFRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
..|++.+|-..++++++..|.|...++..=.+|.-.|+.+.-...++++... +++.....-..+.-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3455555555666666666666666666666666666665555555555433 1111122222233334455666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 267 MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 267 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
++.-++..+.+ +.|...-.+....+-..|+..++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666555543 33444455555555556666666555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.97 E-value=10 Score=40.45 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=44.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC
Q 041822 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTR--TVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSR 435 (500)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 435 (500)
.+.+|...|+|.+|+.+..++... -+.. +-..|..-+...++.-+|-++..+.... | ...+..|++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhH
Confidence 355666666666666666555321 1111 1134555566667766666666555431 1 2334456677
Q ss_pred CCHHHHHHHHHHH
Q 041822 436 GRWEEAFECSKQM 448 (500)
Q Consensus 436 g~~~~A~~~~~~m 448 (500)
..|++|..+....
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 7777777765544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.7 Score=40.14 Aligned_cols=137 Identities=9% Similarity=0.052 Sum_probs=91.1
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.|.+.|++..|...|++....-. |.+.-+.++... ... .-..++..+..++.+.++
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~-----------------~~~~~~~ee~~~-~~~------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLE-----------------YRRSFDEEEQKK-AEA------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhh-----------------ccccCCHHHHHH-HHH------HHHHHhhHHHHHHHhhhh
Confidence 46788999999998888654421 111111122111 111 234567888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC-HHHHHHHH
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA-GLVRN-IHQARQLF 305 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~-~~~a~~~~ 305 (500)
+..|.+.-+..+..+ ++|.-..-.=..+|...|+++.|+..|+++++.. |+....+.=+..| .+... .+...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888775 4466666666788999999999999999999864 6655555444444 33333 34446777
Q ss_pred HhchhC
Q 041822 306 DEMPKR 311 (500)
Q Consensus 306 ~~~~~~ 311 (500)
..|...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 777553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.79 Score=40.65 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=51.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL-----RGFRPSVVTYNIRI 254 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~li 254 (500)
++..++..+...|+.+.+...++++....+-+...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4566666777777777777777777766666777777777777777777777777766654 26666666655554
Q ss_pred HH
Q 041822 255 DG 256 (500)
Q Consensus 255 ~~ 256 (500)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.49 E-value=9.3 Score=38.44 Aligned_cols=186 Identities=12% Similarity=0.038 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhHhhCCCCccHHHHHHHHHH-HhccccHHHHHHHHHHHHHH---HhccccCCChhhHHHHHHHHHcCC--
Q 041822 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSR-ISKFQSYEETLEAFDRMERE---IFVGIRKFGSEEFNVLLQAFCTQK-- 192 (500)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~~-- 192 (500)
...|.+.++...+.+....-...-...... +....+.+.|+..|+...+. .. ..-......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHHHHHhcCCCC
Confidence 456777777777653221111111112222 45667888888888887661 00 1114445666777776643
Q ss_pred ---CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChh
Q 041822 193 ---EMKEARSVFVKLLSRFAPNNKTMNILLLGFKE-SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC----KKGCFG 264 (500)
Q Consensus 193 ---~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~ 264 (500)
+.+.|..++....+.-.|+....-..+..... ..+...|.++|....+.|.. ..+-.+..+|. ...+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHH
Confidence 55667777777766334444443333332222 24567788888888777732 22222222222 234567
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC
Q 041822 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 265 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 312 (500)
.|..++.+.-+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 7777777777776 2222222223333333 66666666666655554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=5.6 Score=37.90 Aligned_cols=131 Identities=7% Similarity=0.022 Sum_probs=66.0
Q ss_pred HhH--HHHHHHHHcC-----CChHHHHHHHHHhH---hhCCCCccHHHHHHHHHHHhc---------cccHHHHHHHHHH
Q 041822 104 DAF--EKTLHILARM-----RYFDQAWELMSHVQ---RTHPSLLTLKSMSIMLSRISK---------FQSYEETLEAFDR 164 (500)
Q Consensus 104 ~~~--~~l~~~~~~~-----g~~~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~ 164 (500)
..| ...+.+.... -+.+.|..+|.+.. +.+|.. ...+..+..++.. .....+|.+.-++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~--a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK--TECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 455 4555555442 23467888888888 443332 2233222222111 1223333444444
Q ss_pred HHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 165 MEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
..+. .+.|..+...+..+..-.++++.|...|++...-.|....+|........-.|+.++|.+.+++..+.
T Consensus 330 Avel-----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 330 VSDI-----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHhc-----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 4333 34555555555555555556666666666665533444445555555555556666666666664443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.43 E-value=5 Score=40.86 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=91.3
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC-------hHHHHHHHHHhHhhCC--C
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY-------FDQAWELMSHVQRTHP--S 135 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~--~ 135 (500)
....+|.+ +-.+.+.|++++|+++...... .+......+...+..+....+ -++...-++...+..+ +
T Consensus 110 ~~~p~Wa~-Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~D 186 (613)
T PF04097_consen 110 NGDPIWAL-IYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGD 186 (613)
T ss_dssp TTEEHHHH-HHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-
T ss_pred CCCccHHH-HHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 44455644 3456789999999999965554 345666777888888876532 2344555555444322 2
Q ss_pred CccHHHHHHHHHHHhccccHHHHH-HHHHHHHHHHhccccCCChhhHHHHHHHHHcC---------CCHHHHHHHHHHhh
Q 041822 136 LLTLKSMSIMLSRISKFQSYEETL-EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ---------KEMKEARSVFVKLL 205 (500)
Q Consensus 136 ~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~A~~~~~~m~ 205 (500)
......|..+ +++.-...-. .+...+.+ ..|-.|.-.-... -.+++..+.+.+.-
T Consensus 187 pyK~AvY~il----g~cD~~~~~~~~V~~tiED-----------~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G 251 (613)
T PF04097_consen 187 PYKRAVYKIL----GRCDLSRRHLPEVARTIED-----------WLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG 251 (613)
T ss_dssp HHHHHHHHHH----HT--CCC-S-TTC--SHHH-----------HHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-
T ss_pred hHHHHHHHHH----hcCCccccchHHHhCcHHH-----------HHHHHHHhhccCCCccccccccccHHHHHHHHHHhc
Confidence 2222222222 2211100000 11111111 0111111111111 01222222222222
Q ss_pred h-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH
Q 041822 206 S-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA-CLPSLQ 283 (500)
Q Consensus 206 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~ 283 (500)
+ .+.+ ....-.....+.-.|.++.|.+++-. ..+...+.+++...+..|.-.+-.+... ..+.... -.|...
T Consensus 252 e~~F~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~l 325 (613)
T PF04097_consen 252 ESHFNA-GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPL 325 (613)
T ss_dssp GGGCTT-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------
T ss_pred hhhccc-chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCc
Confidence 2 2333 11122233445567889998888766 2234556667666665543322222211 2222111 011125
Q ss_pred HHHHHHHHHHc---cCCHHHHHHHHHhchhCC
Q 041822 284 TITTLIHGAGL---VRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 284 ~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~ 312 (500)
-+..||..|.+ ..+...|.++|-.+....
T Consensus 326 n~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 326 NFARLIGQYTRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp -HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-
T ss_pred CHHHHHHHHHHHHhccCHHHHHHHHHHHHHcC
Confidence 57777777765 456888888887776653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.29 E-value=6.4 Score=35.99 Aligned_cols=226 Identities=11% Similarity=0.078 Sum_probs=108.1
Q ss_pred HHcCCCHHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHH----HHHHCCCCCC---HHHHHHHHHHH
Q 041822 188 FCTQKEMKEARSVFVKLLSR---FAPNNKTMNILLLGFKESGDVTAMEMFYH----EMVLRGFRPS---VVTYNIRIDGY 257 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~g~~~~---~~~~~~li~~~ 257 (500)
+....+.++|+..+.+.+.+ ......+|..+..+.++.|.+++++..-- ...+. +.+ -..|..+.+++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44566777777777776642 22234566666777777777665554321 11111 111 22334444444
Q ss_pred HhcCChhHHHHHHHHHHH-cCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHhchhCC-----CCCCHhhHHHHHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMER-VACLP---SLQTITTLIHGAGLVRNIHQARQLFDEMPKRN-----LKPDIGAYNAMISSLI 328 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~-~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~ 328 (500)
-+..++.+++.+-..-.. .|..| .-....++-.++...+.++++++.|+...+.. .-....+|..|-..|.
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 444445555544443322 11111 11122334455555666777777766654421 1123346666777777
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHHHHHcCChhHHHHHHHHHH----hCCCCCC-HHHHHHHH
Q 041822 329 RCRDLNAAMELMDEMEE----KRIGHDNVTYHT-----MFFGLMKSSGLEGVCKLYDRMI----EGKFVPK-TRTVVMLM 394 (500)
Q Consensus 329 ~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~----~~~~~p~-~~~~~~ll 394 (500)
+..|+++|.-+..+..+ -++.--..-|.. |.-++...|....|.+.-++.. ..|-.+. ......+.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 77777776655544322 122211112222 2334555666666665555443 2232221 22333444
Q ss_pred HHHHHcCCHhhHHHHHHHHHH
Q 041822 395 KFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~ 415 (500)
..|-..|+.+.|+.-|+....
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 455555666666555555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.18 E-value=11 Score=38.41 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=45.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC-CCCCHhhHHHHHHHHHhc-
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN-LKPDIGAYNAMISSLIRC- 330 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~- 330 (500)
....+.-.|+++.|++.+-+ ..+...+.+++...+..|.-.+-.+... ..+.... -.|...-+..||..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34556678999999999887 3344567777777776655443333222 2222211 011225688888888764
Q ss_pred --CCHHHHHHHHHHHHHC
Q 041822 331 --RDLNAAMELMDEMEEK 346 (500)
Q Consensus 331 --g~~~~a~~~~~~~~~~ 346 (500)
.+..+|.++|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 5788888888766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.9 Score=35.66 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHhc
Q 041822 295 VRNIHQARQLFDEM 308 (500)
Q Consensus 295 ~~~~~~a~~~~~~~ 308 (500)
.+++..|-+.|-+.
T Consensus 126 ~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 126 QRDFKEAAELFLDS 139 (177)
T ss_pred hchHHHHHHHHHcc
Confidence 44555555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.30 E-value=6.6 Score=33.62 Aligned_cols=202 Identities=16% Similarity=0.084 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHH
Q 041822 247 VVTYNIRIDGYCKKGCFGDAMRLFEEMERV-ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 325 (500)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 345555555566666666666666555532 122334445555555555566666666666665543222 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 041822 326 -SLIRCRDLNAAMELMDEMEEKRI--GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP-KTRTVVMLMKFFCVNF 401 (500)
Q Consensus 326 -~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~ 401 (500)
.+...|+++.|...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 56677777777777776644211 1122333333344556677777777777776542 22 3555666666677777
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
+++.+...+......... ....+..+...+...|..+++...+.+....
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777764311 2333444444444666677777777777654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.28 E-value=10 Score=35.86 Aligned_cols=365 Identities=12% Similarity=0.116 Sum_probs=188.4
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCC---CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHP---HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKS 141 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 141 (500)
++-+.-++.+..+...|++.++..+++++...- ....+..+|+.++-.++++ .|-++.+......-...
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdy 197 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDY 197 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHH
Confidence 556666788888999999999998888877631 2337899999988887764 33333332211111222
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC--CCHHHHHHHHHHhhh-CCCCCH-HhHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ--KEMKEARSVFVKLLS-RFAPNN-KTMNI 217 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~m~~-~~~~~~-~~~~~ 217 (500)
| .++..|.+.=+.-++.. +++ .-|-......++....-. .+..--.+++..... -+.|+- -+...
T Consensus 198 Y-emilfY~kki~~~d~~~-Y~k---------~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~ 266 (549)
T PF07079_consen 198 Y-EMILFYLKKIHAFDQRP-YEK---------FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEP 266 (549)
T ss_pred H-HHHHHHHHHHHHHhhch-HHh---------hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHH
Confidence 2 23333332211111100 000 011111122222222111 111112222222221 123332 22333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-------
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFR----PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTIT------- 286 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------- 286 (500)
|...+.+ +.+++..+-+.+....+. -=..+|..++....+.++..+|.+.+.-+.-.+ |+...-.
T Consensus 267 L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~ 342 (549)
T PF07079_consen 267 LKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPK 342 (549)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHH
Confidence 3333333 344444443333322111 024467777777788888888887777665533 3322111
Q ss_pred HHHHHHH----ccCCHHHHHHHHHhchhCCCCCCHhhHHHHH---HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041822 287 TLIHGAG----LVRNIHQARQLFDEMPKRNLKPDIGAYNAMI---SSLIRCRD-LNAAMELMDEMEEKRIGHDNVTYHTM 358 (500)
Q Consensus 287 ~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 358 (500)
.+-+..+ ...+...-+.+|+.....++.. .....-|+ .-+.+.|. -++|.++++.+.+-... |...-|.+
T Consensus 343 ~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v 420 (549)
T PF07079_consen 343 VLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIV 420 (549)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 1112222 1122445556677666665431 11222222 23445555 78899999988875222 44333332
Q ss_pred H----HHHHH---cCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHHcCCHhhHHHHHHHHHHCCCCCCHhHH
Q 041822 359 F----FGLMK---SSGLEGVCKLYDRMIEGKFVPK----TRTVVMLMKF--FCVNFRVDLGLNLWGYLIDRGFCPHGHAL 425 (500)
Q Consensus 359 i----~~~~~---~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 425 (500)
. .+|.+ ...+.+.+++-+-+.+.|+.|- ...-|.|..| +...|++.++.-.-..+.+ +.|++.+|
T Consensus 421 ~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~ 498 (549)
T PF07079_consen 421 FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAY 498 (549)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHH
Confidence 2 23322 2334455555555567777764 2333334333 3567888888766666655 67999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 041822 426 DLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYR 461 (500)
Q Consensus 426 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 461 (500)
..+.-++....++++|.+++.++ +|+..+++
T Consensus 499 RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d 529 (549)
T PF07079_consen 499 RLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD 529 (549)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence 99999999999999999999876 45555553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.1 Score=43.56 Aligned_cols=150 Identities=13% Similarity=0.010 Sum_probs=92.3
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
-.|+++.|..++-.+.+. .-+.+...+.+.|..++|+++ .+|..-- .....+.|+++.
T Consensus 598 mrrd~~~a~~vLp~I~k~-----------~rt~va~Fle~~g~~e~AL~~--------s~D~d~r---Felal~lgrl~i 655 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE-----------IRTKVAHFLESQGMKEQALEL--------STDPDQR---FELALKLGRLDI 655 (794)
T ss_pred hhccccccccccccCchh-----------hhhhHHhHhhhccchHhhhhc--------CCChhhh---hhhhhhcCcHHH
Confidence 345566665555444322 345666667777777777654 2222211 233445678888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
|.++..+.. +..-|..|.++..+.|++..|.+.|....+ |..|+-.+...|+-+....+-....+
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 877654433 567788888888888888888888876655 44566666677777666655555555
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 311 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
.|. .|....+|...|+++++.+++.+-
T Consensus 721 ~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 721 QGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 552 223334566778888887777543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.42 Score=27.30 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888888888888888888754
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.78 E-value=13 Score=35.82 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRIG-HDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
+-..+..++-+.|+.++|.+.+++|.+.... -.......|+.++...+.+.++..++.+..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3344555566677777777777777654221 122344556777777777777777777654
|
The molecular function of this protein is uncertain. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.74 E-value=2.9 Score=34.61 Aligned_cols=95 Identities=14% Similarity=-0.032 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhhHHHHHHHHHHC---CCCCCH----h
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK--TRTVVMLMKFFCVNFRVDLGLNLWGYLIDR---GFCPHG----H 423 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~ 423 (500)
..+..+...|++.|+.++|.+.|.++.+....+. ...+..+|+.+...+++..+.....+.... |-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3456667777777777777777777776544443 334556666777777777777776665542 211221 2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
+|..+. +...+++.+|-+.|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 233332 344688888888876664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.69 E-value=5.9 Score=31.79 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=36.2
Q ss_pred HHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 041822 111 HILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
..-.+.++.+.+..++.-+.-..|.......+...+ +...|++.+|..+|+++...
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 333455677777777777777666666555554444 56677777777777776543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.67 E-value=17 Score=36.87 Aligned_cols=309 Identities=11% Similarity=0.039 Sum_probs=159.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH--HHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM--KEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
.++..+...+.+..|.++-..+...- ..+..+|.....-+.+..+. +++.+..++=.+..-....+|..+.+.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~-----~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPE-----SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARR 516 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcc-----ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHH
Confidence 35566667777777777766653221 11134555555555554321 222222222221112355667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 041822 222 FKESGDVTAMEMFYHEMVLRGFR----PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
....|+.+-|..+++.=...+.+ .+..-+...+.-+...|+.+-...++-.+.++ .+...+...+ .+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hh
Confidence 77778888777765432221110 01122334444555566666666666555543 1222222222 23
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH--HHHH----HCCCCCCHHHHHHHHHHHHHcCC----
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM--DEME----EKRIGHDNVTYHTMFFGLMKSSG---- 367 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~--~~~~----~~~~~~~~~~~~~li~~~~~~g~---- 367 (500)
...|..+|.+..+.. |..+ +- .+.+.++-..+...| +... ..+..|+.. ....++.+...
T Consensus 588 ~p~a~~lY~~~~r~~---~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ---DRAT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFE 657 (829)
T ss_pred chhhhHHHHHHHHhh---chhh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhH
Confidence 344555555544421 1111 11 122223222222222 1100 112223322 23333433322
Q ss_pred ------hhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHH
Q 041822 368 ------LEGVCKLYDRMIE-GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440 (500)
Q Consensus 368 ------~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 440 (500)
..+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..++|++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHH
Confidence 2223333333332 2333334455556666778899999888766543 3788899889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 441 AFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 441 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
-+++-+.+. ++.-|.-...+|.+.|+.++|.++.-+....
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 888766654 2455667788899999999999987765443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.49 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 041822 250 YNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666667777776666663
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.30 E-value=6.1 Score=31.18 Aligned_cols=53 Identities=15% Similarity=-0.007 Sum_probs=34.1
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
-...++.+++..+++.|.-. .|.....-..-.-.+...|+|++|.++|+++.+
T Consensus 20 aL~~~d~~D~e~lLdALrvL-----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL-----RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh-----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 34467777777777777655 233333333444456677888888888888775
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.24 E-value=8.7 Score=32.84 Aligned_cols=223 Identities=17% Similarity=0.104 Sum_probs=154.9
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHhchhC-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACL-PSLQTITTLIHGAGLVRNIHQARQLFDEMPKR-NLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666655422 13567777788888999999999888887752 23445667777888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFF-GLMKSSGLEGVCKLYDRMIEGKFVP----KTRTVVMLMKFFCVNFRVDLGLNLWGY 412 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~ 412 (500)
+.+.........+ ......... .+...|+++.+...+.+.... .| ....+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999888764443 122222333 788999999999999998652 33 234444444456778999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 413 LIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
..+.........+..+...+...++++.|...+......... ....+..+...+...+..+.+....+.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 988542214677888888999999999999999999864322 2334444444444666677777666655544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.08 E-value=7.8 Score=35.48 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhh---CCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChh
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRT---HPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSE 179 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 179 (500)
..|..+.+.+-+.-++.+++.+-..-... .+..........+..++...+.++++++.|+...+.... +.......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 44445555554444555555544443332 111111223334555555556666666666554332211 10122234
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh---CCC-CCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLS---RFA-PNN------KTMNILLLGFKESGDVTAMEMFYHEMVL----RGFRP 245 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~-~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~~ 245 (500)
+|..|...|.+..+.++|.-+..+..+ .+. .|. .....|.-++...|.+..|.+.-++..+ .|-++
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 566666666666666666555544432 111 111 1122333444555655555544444332 23221
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 246 -SVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 246 -~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
-......+.+.|...|+.+.|+.-|++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223344566666777777777666654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.94 E-value=6.7 Score=38.44 Aligned_cols=132 Identities=18% Similarity=0.239 Sum_probs=69.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
..+.+++.+-+.|..++|+++-. .|+ . -.....+.|+++.|.++..+.. +..-|..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~-----D~d----~----rFelal~lgrl~iA~~la~e~~----------s~~Kw~~L 672 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST-----DPD----Q----RFELALKLGRLDIAFDLAVEAN----------SEVKWRQL 672 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC-----Chh----h----hhhhhhhcCcHHHHHHHHHhhc----------chHHHHHH
Confidence 44455555666666555555421 111 0 1122335566666666544432 33446666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|...-+|...|+++
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~ 738 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYE 738 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHH
Confidence 6777777777777666666553 44555566666665555555444444442 122223445566666
Q ss_pred HHHHHHHHH
Q 041822 265 DAMRLFEEM 273 (500)
Q Consensus 265 ~a~~~~~~m 273 (500)
++.+++.+-
T Consensus 739 ~C~~lLi~t 747 (794)
T KOG0276|consen 739 ECLELLIST 747 (794)
T ss_pred HHHHHHHhc
Confidence 666665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.75 E-value=22 Score=36.59 Aligned_cols=173 Identities=12% Similarity=0.093 Sum_probs=109.7
Q ss_pred HHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHH----HHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEK----TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
..+.+...+.-|+.+-+.- ..+..+... ..+.|-+.|++++|...+-+.... ... ..++.-|.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~----s~Vi~kfL 408 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEP----SEVIKKFL 408 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CCh----HHHHHHhc
Confidence 3345566777777765432 233444433 444455789999998877554431 111 23566677
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
...+..+-...++.+.+.+. .+..--..|+.+|.+.++.++-.+..+.-.+|.. ..-....+..+.+.+-.++
T Consensus 409 daq~IknLt~YLe~L~~~gl-----a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGL-----ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred CHHHHHHHHHHHHHHHHccc-----ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHH
Confidence 77888888888888888763 3555668899999999999887777666543311 1224566777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|..+-..... +......++. ..|++++|++.+..+.-
T Consensus 482 a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCCH
Confidence 7766443322 3444444443 56889999998887643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.74 E-value=6.5 Score=32.62 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=56.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCC-CCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHP-SLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
.+...+..+|++++|..-++....... .....-.-..+.+.....|.+++|+..++.....++ .......-.+
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w------~~~~~elrGD 167 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW------AAIVAELRGD 167 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH------HHHHHHHhhh
Confidence 445556777888888887776664211 111222233455666777888888888777655432 1222334456
Q ss_pred HHHcCCCHHHHHHHHHHhhh
Q 041822 187 AFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~ 206 (500)
.+...|+-++|..-|...++
T Consensus 168 ill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHcCchHHHHHHHHHHHH
Confidence 67777777777777777665
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.74 E-value=7 Score=30.87 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=39.6
Q ss_pred HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 041822 114 ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
...++.+++..+++-+.-..|.......+...+ +...|++++|.++|+++...
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 457788888888888887777776666665554 66788888888888888655
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.73 E-value=12 Score=33.41 Aligned_cols=116 Identities=13% Similarity=0.189 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc-cC-CHHHHHHHHHhchh-CCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 262 CFGDAMRLFEEMER-VACLPSLQTITTLIHGAGL-VR-NIHQARQLFDEMPK-RNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 262 ~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
.+.+|+++|+.... ..+.-|..+...+++.... .+ ....-.++.+-+.. .|..++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653222 2344556666666665544 11 12222223332222 234556666677777777777777777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 338 ELMDEMEEK-RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 338 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
++++..... +...|...|..+|......|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 776665544 4555667777777777777776555555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.42 E-value=4.8 Score=35.98 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=74.1
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR----FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVT 249 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 249 (500)
.+..+.+...++..-....+++.++..+-+++.. ..|+... ...++.+.+ -+.+++..++..=++.|+-||-.+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 4556666677777777778889998888887741 2233222 233333333 356788888888888899999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 250 YNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
++.+|+.+.+.+++.+|..+.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998887776544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.24 E-value=4.8 Score=36.00 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=46.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 041822 209 APNNKTMNILLLGFKESGDVTAMEMFYHEMVLR---GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTI 285 (500)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 285 (500)
+....+...++.......+++.+...+-.+... ...|+...+ +.++.+. .-++++++.++..=.+.|+.||.+++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 334444444444444445555555554444432 111221111 1122221 23444555555555555555555555
Q ss_pred HHHHHHHHccCCHHHHHHHHHhchh
Q 041822 286 TTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
+.+|+.+.+.+++.+|.++.-.|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555555555555555555444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.78 E-value=25 Score=35.82 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=16.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.|+..|...|++.+|++++-..++
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 366777777777777777766554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.52 Score=26.51 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=16.4
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEAR 198 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~ 198 (500)
.|.+..+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666777777777777666664
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.69 E-value=24 Score=34.10 Aligned_cols=54 Identities=7% Similarity=-0.038 Sum_probs=23.9
Q ss_pred HHHHHcCCHhhHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 395 KFFCVNFRVDLGLNLWGYLIDRG-FCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
.++-+.|+.++|.+.+.+|.+.. ...+..+...|+.++...+.+.++..++.+.
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33344455555555555544321 1112223344455555555555555555544
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.56 E-value=21 Score=33.34 Aligned_cols=65 Identities=14% Similarity=-0.033 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 246 SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP---SLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
...+|..+.+.+.+.|+++.|...+.++.+.+... .....-.-.+..-..|+.++|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777777777788777777777776643111 223333334455566777777777766665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.50 E-value=2.8 Score=30.42 Aligned_cols=74 Identities=7% Similarity=-0.012 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHh--hHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 390 VVMLMKFFCVNFRVD--LGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
|..=-..+....+.+ +..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+.+-- +....|..++
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 333333444433333 4555666666778889999999999999999999999999988876422 2222555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.18 E-value=0.57 Score=26.33 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=13.1
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHH
Q 041822 208 FAPNNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
.|-|...|+.+...+...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555555555555555555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.78 E-value=1.8 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=15.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCC
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHP 134 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 134 (500)
+|..+..++...|++++|+..|++..+..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344555555555555555555555555433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.59 E-value=16 Score=30.93 Aligned_cols=164 Identities=14% Similarity=0.005 Sum_probs=88.2
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG-FRPSVVTYNI 252 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ 252 (500)
.|.-+.+||.+.--+...|+++.|.+.|+...+-.+....+.-.-.-++.-.|++.-|.+=+...-+.. -.|-...|--
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 455567889888888999999999999999887433333333222223334678887777666655552 2222333333
Q ss_pred HHHHHHhcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC------CCHhhHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFE-EMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK------PDIGAYNAMIS 325 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~li~ 325 (500)
+.. ..-++.+|..-+. +..+ .|..-|...|-.|.- |++.. ..+++++....-. .=..||--+..
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 322 3455666654433 3333 244444443333221 22110 1122222221100 01245666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 041822 326 SLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 326 ~~~~~g~~~~a~~~~~~~~~~ 346 (500)
-|...|+.++|..+|+-....
T Consensus 246 ~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHhccccHHHHHHHHHHHHHH
Confidence 777778888888888766654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.57 E-value=2 Score=23.71 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCC
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHP 134 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 134 (500)
+..+...+...|++++|++.|++..+..|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 44455555555555555555555555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.19 E-value=36 Score=34.37 Aligned_cols=181 Identities=11% Similarity=0.095 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHH--HH---HHcCCChHHHHHHHHHhHhh---CCCCccHHHHHHHHHHHhcc--
Q 041822 83 GLKALEFFKFTLQHPHFTPTPDAFEKTL--HI---LARMRYFDQAWELMSHVQRT---HPSLLTLKSMSIMLSRISKF-- 152 (500)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~---~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~-- 152 (500)
...|.++++...... +......+. .. .+...+.+.|...++...+. .-..-.......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 457888888887763 222222222 22 33567899999999998761 00000112344455556553
Q ss_pred --c-cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC---CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh--
Q 041822 153 --Q-SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ---KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE-- 224 (500)
Q Consensus 153 --g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~-- 224 (500)
. +.+.|...+......+ ++..-..+...+... .+...|.++|....+.. ....+-.+..+|..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGL 374 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCC
Confidence 2 6778999998887764 233333344444332 46789999999988632 33333333333332
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041822 225 --SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVAC 278 (500)
Q Consensus 225 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 278 (500)
..+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...|.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 345689999999999887 3333333334444554 888888877777777663
|
|
| >PF13934 ELYS: Nuclear pore complex assembly | Back alignment and domain information |
|---|
Probab=86.94 E-value=20 Score=31.15 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=9.5
Q ss_pred HHHHHHcCCChHHHHHHHHH
Q 041822 109 TLHILARMRYFDQAWELMSH 128 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~ 128 (500)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444555555444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.77 E-value=6.9 Score=28.20 Aligned_cols=59 Identities=8% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHH
Q 041822 370 GVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLV 429 (500)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 429 (500)
++.+-+..+....+.|++....+.+++|-+.+++..|.++++..+.+. ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 444555555556667777777777777777777777777777666321 12334555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.68 E-value=1.2 Score=24.40 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=13.3
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCC
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHP 134 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~ 134 (500)
+..++.+.|++++|.+.|+++.+..|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444445555555555555555444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.60 E-value=1.8 Score=25.33 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 423 HALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777788888888888888877754
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.20 E-value=77 Score=37.23 Aligned_cols=322 Identities=8% Similarity=0.042 Sum_probs=172.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHH-HHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLH-ILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
.|.++-.+.+.+.+|+..++.-.....-..-...+..++. .|+..+++|...-+...-.. .| .+...+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~------sl~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DP------SLYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-Cc------cHHHHHHHHH
Confidence 4555666788899999999884221100112233444554 89999999988887764221 11 1333444577
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH-HHHHHhcCCHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL-LLGFKESGDVT 229 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l-~~~~~~~~~~~ 229 (500)
..|++..|...|+.+.+. .++....++-++......|.+..+....+....+..+....++++ +.+.-+.++++
T Consensus 1461 ~~g~~~da~~Cye~~~q~-----~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQK-----DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred hhccHHHHHHHHHHhhcC-----CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchh
Confidence 889999999999999877 356677899999998899999988887776665555555555544 44556788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhc--CChhHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHccC
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIR--IDGYCKK--GCFGDAMRLFEEMERVACLP---------SLQTITTLIHGAGLVR 296 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~m~~~~~~~---------~~~~~~~ll~~~~~~~ 296 (500)
..+..+. .. +..+|... .....+. .+.-.-.+..+.+++.-+.| -...|..+++...-..
T Consensus 1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 8877654 22 33344333 2222222 22111122333333221110 1123333333222111
Q ss_pred CHHHHHHHHHhchh-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCC-CCHHHHHHHHHHHHHcCChh
Q 041822 297 NIHQARQLFDEMPK-RNLKPDIGAYNAMISSLIRCRDLNAAMELMDE-MEEK----RIG-HDNVTYHTMFFGLMKSSGLE 369 (500)
Q Consensus 297 ~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~----~~~-~~~~~~~~li~~~~~~g~~~ 369 (500)
.+...+.+..... .....+.--|..-+..-....+..+-+--+++ +... +.. --...|-...+....+|+++
T Consensus 1609 -l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 -LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred -HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1111111111100 00011111111111111111111111111111 1111 111 12356777778888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC
Q 041822 370 GVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 416 (500)
.|...+-...+.+ . +..+.......-..|+...|..++++.++.
T Consensus 1688 ~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9988776666654 2 334555666777889999999999888854
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.97 E-value=47 Score=34.61 Aligned_cols=221 Identities=11% Similarity=0.072 Sum_probs=110.3
Q ss_pred HcCCCHHHHHHHHHHhhhCCCC-CH-------HhHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAP-NN-------KTMNILLLG-FKESGDVTAMEMFYHEMVLR----GFRPSVVTYNIRID 255 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~-~~-------~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~ 255 (500)
....++++|..+..+.....++ +. ..|+.+-.. ....|+++.+.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567888888888887752222 11 123333222 23457778877776665544 22344556667777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---HHH--HHHHccCC--HHHHHHHHHhchhCC---C---CCCHhhHHH
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACLPSLQTIT---TLI--HGAGLVRN--IHQARQLFDEMPKRN---L---KPDIGAYNA 322 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~ll--~~~~~~~~--~~~a~~~~~~~~~~~---~---~~~~~~~~~ 322 (500)
+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+ ..+....|....... . .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777888888888877665532122333322 222 22445553 222333333322210 0 112334455
Q ss_pred HHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHhCCC----CCCHHHHHH
Q 041822 323 MISSLIRCRDLNAAMEL----MDEMEEKRIGHDNVT--YHTMFFGLMKSSGLEGVCKLYDRMIEGKF----VPKTRTVVM 392 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~ 392 (500)
+..++.+ .+.+..- ++--......|-... +..|+......|+.++|...+.++..... .++..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555554 3333222 222222222221121 22566777788999999888888764322 222222222
Q ss_pred HHHH--HHHcCCHhhHHHHHHH
Q 041822 393 LMKF--FCVNFRVDLGLNLWGY 412 (500)
Q Consensus 393 ll~~--~~~~~~~~~a~~~~~~ 412 (500)
.+.. ....|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 2345777766665544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.52 E-value=26 Score=31.24 Aligned_cols=41 Identities=15% Similarity=-0.003 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
.+|+++|..+++.. --..+-+.++.++....+..+|...+.
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHH
Confidence 46777777666551 123334445555555555555554443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.44 E-value=2.3 Score=24.78 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666666667777777776666543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.42 E-value=12 Score=27.31 Aligned_cols=60 Identities=7% Similarity=0.105 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHH
Q 041822 370 GVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVT 430 (500)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 430 (500)
+..+-+..+....+.|++....+.+++|-+.+++..|.++++..+.. ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45556666667778889888999999999999999999999888754 1223336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.37 E-value=38 Score=32.91 Aligned_cols=168 Identities=11% Similarity=0.131 Sum_probs=97.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 041822 207 RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTIT 286 (500)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 286 (500)
+.+.|.....+++..+..+..+.-++.+-.+|...| -+...|..++.+|..+ ..++-..+++++.+..+ |.....
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ 135 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIG 135 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHH
Confidence 445566677777777777777777777777777765 2566677777777766 55666777777776542 333333
Q ss_pred HHHHHHHccCCHHHHHHHHHhchhCCCCC--C---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 041822 287 TLIHGAGLVRNIHQARQLFDEMPKRNLKP--D---IGAYNAMISSLIRCRDLNAAMELMDEMEEK-RIGHDNVTYHTMFF 360 (500)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 360 (500)
--+..+...++.+.+..+|..+...=++- + ...|..++..- ..+.|....+..++... |...-.+.+.-+-.
T Consensus 136 ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 136 RELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 33333333467777777776665542210 0 11333333211 24555555655555543 33333444455555
Q ss_pred HHHHcCChhHHHHHHHHHHhC
Q 041822 361 GLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~ 381 (500)
-|....++.+|++++..+.+.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 214 KYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HhccccCHHHHHHHHHHHhhh
Confidence 666667777777777766654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.21 E-value=2.8 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.02 E-value=16 Score=30.64 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=49.6
Q ss_pred HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC
Q 041822 114 ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE 193 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 193 (500)
.+.|+ +.|.+.|-.+... |...+......+...| ...+.+++..++.+.......+ ..+|+..+.+|+..+.+.|+
T Consensus 118 sr~~d-~~A~~~fL~~E~~-~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGT-PELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPD-DNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hccCc-HHHHHHHHHHcCC-CCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcc
Confidence 44444 5566666555543 2344444444444444 3667777777777666544322 47788888888888888888
Q ss_pred HHHHH
Q 041822 194 MKEAR 198 (500)
Q Consensus 194 ~~~A~ 198 (500)
.+.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 77774
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.73 E-value=0.61 Score=37.11 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=24.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444445555555555544333344555555555555544444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.66 E-value=7 Score=33.07 Aligned_cols=72 Identities=10% Similarity=0.096 Sum_probs=43.3
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPNNKTMNILLLG 221 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~l~~~ 221 (500)
.++.+.+.++..+|+...+.-.+. .|.|...-..+++.+|-.|+|++|..-++-.-. ...+-..+|..+|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka-----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA-----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455666667776666655554 355666667777777777777777665554432 344455566666554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.56 E-value=8 Score=32.72 Aligned_cols=77 Identities=8% Similarity=-0.015 Sum_probs=52.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR--GFRPSVVTYNIRIDG 256 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~ 256 (500)
+.+..++.+.+.+...+|+....+-++..|.|..+-..+++.+|-.|+|++|..-++...+. ...+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556667777888888888877777656667777788888888888888887776665544 223345556666554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.52 E-value=39 Score=32.42 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=84.7
Q ss_pred HHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC
Q 041822 112 ILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ 191 (500)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 191 (500)
--...|++..|.+-+....+..|..++...+... .+...|.++.+...+....+. ......+...+++...+.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-----~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-----IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-----hcCCchHHHHHHHhhhch
Confidence 3345678777776666666666665554433333 366789999998888776654 345667788899999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 192 KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 192 ~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
|+++.|...-.-|+..-..+...........-..|-++++...|+++...
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999999988888643445555444444445566778888888777654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.46 E-value=13 Score=33.08 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEM 238 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (500)
+...+.|..+|.+.+|.++.+....-.+.+...+..++..+...||--.+.+.++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334444555555555555555555444445555555555555555544444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.39 E-value=93 Score=36.62 Aligned_cols=317 Identities=8% Similarity=0.039 Sum_probs=168.0
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhC-CCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH
Q 041822 110 LHILARMRYFDQAWELMSHVQRTH-PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF 188 (500)
Q Consensus 110 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 188 (500)
..+--+++.+.+|.-.++.-.... +.......+..+-..|+..+++|....+...-.. +. ....-|-..
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~-sl~~qil~~ 1459 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DP-SLYQQILEH 1459 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Cc-cHHHHHHHH
Confidence 334457788888888888742211 1222222333344488999999888777663111 11 234455566
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIR-IDGYCKKGCFGDAM 267 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~ 267 (500)
...|+|..|...|+.+.+..++...+++-+++.....|.++.+....+..... ..+....++.+ +.+--+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 77899999999999999866777888888888888888888777655544433 22233333333 33446678887776
Q ss_pred HHHHHHHHcCCCCCHHHHHHH--HHHHHcc--CCHHHHHHHHHhchhC--------CCC-CCHhhHHHHHHHHHhcCCHH
Q 041822 268 RLFEEMERVACLPSLQTITTL--IHGAGLV--RNIHQARQLFDEMPKR--------NLK-PDIGAYNAMISSLIRCRDLN 334 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~l--l~~~~~~--~~~~~a~~~~~~~~~~--------~~~-~~~~~~~~li~~~~~~g~~~ 334 (500)
.... .. +..+|... .....+. .|.-...+..+-+.+. +.. .=...|..++....-+.--.
T Consensus 1539 ~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6655 11 22223222 2222221 2211111222222221 111 01123444444333222111
Q ss_pred HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCChhHHHHH---HHH-HHhCCCCCC-----HHHHHHHHHHHHHcCCHh
Q 041822 335 AAMELMDEMEE-KRIGHDNVTYHTMFFGLMKSSGLEGVCKL---YDR-MIEGKFVPK-----TRTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 335 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~---~~~-~~~~~~~p~-----~~~~~~ll~~~~~~~~~~ 404 (500)
....++ .... .....+...|-.-+. +.+....+.+- +++ +......|+ ..+|....+.+-..|.++
T Consensus 1612 ~~~~l~-~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1612 SIEELK-KVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHhh-ccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 111111 1110 011111112222221 11111112221 111 111111222 567777777778899999
Q ss_pred hHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 405 LGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 405 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
.|...+-...+.+ .| ..+-....-+...|+...|+.++++..+.
T Consensus 1688 ~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9998888777765 33 35556778889999999999999998864
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.26 E-value=8.8 Score=27.67 Aligned_cols=62 Identities=6% Similarity=-0.032 Sum_probs=43.8
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+.+. ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 344556666777777888888888889999999999999999888776432 11334554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.97 E-value=44 Score=32.50 Aligned_cols=94 Identities=9% Similarity=-0.015 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHH
Q 041822 246 SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 325 (500)
|.....+++..+..+.++.-...+..+|...| -+-..|-.++.+|... ..++-..+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44444455555555555555555555555544 3444555555555554 444445555555554332 2222222222
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041822 326 SLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 326 ~~~~~g~~~~a~~~~~~~~ 344 (500)
-|- .++...+...|..+.
T Consensus 141 ~yE-kik~sk~a~~f~Ka~ 158 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKAL 158 (711)
T ss_pred HHH-HhchhhHHHHHHHHH
Confidence 222 244444444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.92 E-value=3.2 Score=22.83 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
.|..+...|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777888888888888888887653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.78 E-value=32 Score=30.78 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHc-C-ChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 041822 333 LNAAMELMDEMEE-KRIGHDNVTYHTMFFGLMKS-S-GLEGVCKLYDRMIE-GKFVPKTRTVVMLMKFFCVNFRVDLGLN 408 (500)
Q Consensus 333 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 408 (500)
+.+|.++|+.... ..+--|......+++..... + ....-.++.+-+.. .+-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555566552211 12223555556666655542 1 12222233333332 2346777778888888888888888888
Q ss_pred HHHHHHHC-CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH-----HHcCCCCCHHHHHHHHHHHH
Q 041822 409 LWGYLIDR-GFCPHGHALDLLVTGLCSRGRWEEAFECSKQM-----LVRRRQVSEASYRMLQRYLV 468 (500)
Q Consensus 409 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~~~~~~~~~~~~l~~~~~ 468 (500)
+|+..... +...|...|..+|+...+.|+..-..+++++- .+.++..+...-..+-+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 88877765 56667888888888888888876666665542 23355555555444444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.52 E-value=31 Score=30.38 Aligned_cols=228 Identities=14% Similarity=0.206 Sum_probs=106.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccc-cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCCH----HhH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGI-RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RFAPNN----KTM 215 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~----~~~ 215 (500)
-.++..+-+.|++++....+.++....-..+ ...+..+.|+++.......+.+.-...|+.-++ ...-|. .|-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3344444455555555554444432110000 122334556666655555555554444443332 111111 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC----C-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHH
Q 041822 216 NILLLGFKESGDVTAMEMFYHEMVLRGFR----P-------SVVTYNIRIDGYCKKGCFGDAMRLFEEMER-VACLPSLQ 283 (500)
Q Consensus 216 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~ 283 (500)
.-|.+.|...+++....+++.++.+.-.. . =...|..=|..|....+-.+...+|++... ..-.|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 45566677777777777777776543110 0 134566666777766666666677776543 12234444
Q ss_pred HHHHHHH----HHHccCCHHHHHH-HHHhc---hhCCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHH--HHHHCCCCC
Q 041822 284 TITTLIH----GAGLVRNIHQARQ-LFDEM---PKRNLKPDIGA---YNAMISSLIRCRDLNAAMELMD--EMEEKRIGH 350 (500)
Q Consensus 284 ~~~~ll~----~~~~~~~~~~a~~-~~~~~---~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~--~~~~~~~~~ 350 (500)
....+-. ...+.|++++|.. +|+.. .+.| .|...+ |..|..++.+.|-- -|+ +.+--.-.|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDP 302 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCH
Confidence 4433322 1245566766653 33333 3334 233222 34444444444310 011 011112234
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
.....+.++.+|.. ++..+-.+++..
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 55667777777744 455555555443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.96 E-value=11 Score=33.32 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=75.6
Q ss_pred HHHhhcCChHHHHHHHHHhhcCC----CCCCCHH--------hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHH
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHP----HFTPTPD--------AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM 142 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (500)
..+--+.|+..|++..++..+.- ....+.. ....-|.+++..+++.++....-+.-+. |......++
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~-pEklPpkIl 121 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV-PEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHH
Confidence 33444667888888877765521 0111111 1234567888888888888877666552 344555667
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc-----CCCHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT-----QKEMKEARSVF 201 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~A~~~~ 201 (500)
..-|-.|.+.+++..+.++-..-...- ...+..-|.+++..|.. .|.+++|+++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p----~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDP----SNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCc----ccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 777777888888888888776655432 12233346666655544 47777777765
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.38 E-value=15 Score=30.80 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHccCCHHH
Q 041822 281 SLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 281 ~~~~~~~ll~~~~~~~~~~~ 300 (500)
|+..+..|...+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33344444444444444333
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.03 E-value=18 Score=31.98 Aligned_cols=57 Identities=7% Similarity=-0.070 Sum_probs=25.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|.++++.++|.++..+.-+.-+.--+.-..+...-|-.|.|.|.+..+.++-..-.+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 455555555555554443333321111222333333445555555555555444443
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.84 E-value=0.68 Score=36.81 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=31.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (500)
++..+.+.+.+....++++.+...+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344455556666666666666655544556666666666666665566555555
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.45 E-value=48 Score=31.18 Aligned_cols=62 Identities=8% Similarity=-0.025 Sum_probs=43.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
.+.-+...|..+|+++.|++.|.+..+ ..+-.+..|-.+|..-.-.|+|..+..+..+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 466777888888999999888888664 22334556666777777778887766666655543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.31 E-value=26 Score=29.33 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=10.7
Q ss_pred HHHHcCCCHHHHHHHHHHhhh
Q 041822 186 QAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~ 206 (500)
.+|.+...+++|+.-|..+.+
T Consensus 176 eayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 345555555555555555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.5 bits (163), Expect = 6e-12
Identities = 21/200 (10%), Positives = 62/200 (31%), Gaps = 4/200 (2%)
Query: 192 KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT---AMEMFYHEMVLRGFRPSVV 248
E ++ + + + + + + + +H + ++
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV-RNIHQARQLFDE 307
YN + G+ ++G F + + + ++ P L + + G ++ + ++
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 308 MPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367
M + LK ++S R L A ++ V + + G
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 368 LEGVCKLYDRMIEGKFVPKT 387
KL+ + + + +
Sbjct: 287 RVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 8e-05
Identities = 15/135 (11%), Positives = 39/135 (28%), Gaps = 3/135 (2%)
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
A L + + P + + L+ A ++ + + + L A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 324 ISSLIRCRDLNAAMELMD---EMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380
+ L A L+ +KR Y+ + G + + + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 381 GKFVPKTRTVVMLMK 395
P + ++
Sbjct: 194 AGLTPDLLSYAAALQ 208
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 2e-09
Identities = 69/404 (17%), Positives = 127/404 (31%), Gaps = 108/404 (26%)
Query: 9 RSDKFPGISDRLALLFSTTTQSSEIERITRIINDHPFPDQPL------HPTLLQHL-PQT 61
RSD I R+ S + R++ P+ + L +
Sbjct: 216 RSDHSSNIKLRI---------HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 62 TPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILAR---MRY 118
L +T + V ++ L A +L H T TPD + +L + R
Sbjct: 267 KILLTTRFKQV--------TDFLSAATTTHISLDHHSMTLTPD---EVKSLLLKYLDCRP 315
Query: 119 FDQAWELMSHVQRTHPSLLTL--KSMSIMLSRISKFQSY---------EETLEAFDRME- 166
D L V T+P L++ +S+ L+ ++ E +L + E
Sbjct: 316 QD----LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 167 REIFVGIRKFGSEEFNV---LLQAFCTQKEMKEARSVFVKLLSRFA----PNNKTMNI-- 217
R++F + F ++ LL + V KL P T++I
Sbjct: 372 RKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 218 LLLGFKESGD-VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC------------FG 264
+ L K + A+ H ++ YNI + G
Sbjct: 431 IYLELKVKLENEYAL----HRSIVD-------HYNIP-KTFDSDDLIPPYLDQYFYSHIG 478
Query: 265 DAMRLFEEMERVACLPSL--------QTI---TTLIHGAGLVRNIHQARQLFDEMPKRNL 313
++ E ER+ + Q I +T + +G + N Q + + K +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY----KPYI 534
Query: 314 KPDIGAYNAMISS-----------LIRCRDLNAA-MELMDEMEE 345
+ Y ++++ LI + + + LM E E
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 85/556 (15%), Positives = 164/556 (29%), Gaps = 153/556 (27%)
Query: 3 LAKRLKRSDKFPGISDRLALLFSTTTQSSEIERITRIIND-HPFPD-----QPLHPTLLQ 56
L +K + P + R+ IE+ R+ ND F + L Q
Sbjct: 94 LMSPIKTEQRQPSMMTRMY-----------IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 57 HLPQTTPLSSTLVENVLGR----LFAAHSNGLKALEFFKF-----TLQHPHFTPTPDAFE 107
L + P + L++ VLG + K F L++ + +P+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN---SPET-- 197
Query: 108 KTLHILARMRY-FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETL------- 159
L +L ++ Y D W S L + S+ L R+ K + YE L
Sbjct: 198 -VLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 160 -----EAFD---RM-----------------EREIFVGIRKFGSEEFNVL-LQAFCTQKE 193
AF+ ++ I + V L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 194 MK----EARSVFVKLLSRFAPNNKTMNILLLGFKESGD---VTAMEMF------------ 234
+ E + + LS A + + +K T +E
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 235 YHEMVLRGFRPSVVTYNIRIDGYC---KKGCFGDAMRLFEEMERVACL---PSLQTITTL 288
+ + + F PS +I D M + ++ + + + P TI+
Sbjct: 375 FDRLSV--FPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-- 427
Query: 289 IHGAGLVRNIHQA-RQLFDEMPK--RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345
I I+ + + R++ + YN + + D + +
Sbjct: 428 IPS------IYLELKVKLENEYALHRSI---VDHYN-----IPKTFDSDDLIPPYL---- 469
Query: 346 KRIGHDN-----VTYHTMFFGLMKSSGLEGVCKLY-D-RMIEGKFVPKTRTVVMLMKFFC 398
D + +H + + ++ D R +E K + T +
Sbjct: 470 -----DQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTA-----WNA 516
Query: 399 VNFRVDLGLNLWGYLIDRGF-CPHGHALDLLVTGLCS-RGRWEEAFECSKQM-LVRR--- 452
++ L Y + + C + + LV + + EE CSK L+R
Sbjct: 517 SGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 453 ---RQVSEASYRMLQR 465
+ E +++ +QR
Sbjct: 574 AEDEAIFEEAHKQVQR 589
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 500 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.17 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.1 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.04 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.66 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.45 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.42 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.38 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.37 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.33 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.32 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.31 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.12 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.03 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.95 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.92 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.91 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.89 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.8 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.73 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.71 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.55 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.51 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.49 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.45 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.44 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.42 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.37 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.05 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.04 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.88 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.86 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.7 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.68 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.68 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.62 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.37 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.14 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.07 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.91 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.81 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.5 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.3 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.22 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.02 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.61 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.93 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.85 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.72 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.12 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.97 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.93 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.66 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.54 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.06 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.79 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.62 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.2 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.66 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.22 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.11 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.64 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.35 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.58 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.42 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.18 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.49 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.25 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.2 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.21 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 80.26 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=302.67 Aligned_cols=412 Identities=9% Similarity=-0.047 Sum_probs=297.0
Q ss_pred CCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHH
Q 041822 63 PLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM 142 (500)
Q Consensus 63 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (500)
+.++...++.+++.+.+.|++++|+.+|+.+... .|+..++..++.+|.+.|++++|..+|+.+.... .+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ 153 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---RSSACR 153 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---TCHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc---cchhHH
Confidence 3467778899999999999999999999999864 5788999999999999999999999999986542 356688
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHH-----------hccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREI-----------FVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-- 209 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-- 209 (500)
..++.+|.+.|++++|.++|+++.... .....+.+..+|+.++.+|.+.|++++|.++|++|.+..+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 899999999999999999998532110 0000133578899999999999999999999998875222
Q ss_pred ---------------------------------------------------------------------CCHHhHHHHHH
Q 041822 210 ---------------------------------------------------------------------PNNKTMNILLL 220 (500)
Q Consensus 210 ---------------------------------------------------------------------~~~~~~~~l~~ 220 (500)
++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 44555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
++.+.|++++|..+|+++.+.+ +.+..+++.++.+|.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 6666666666666666665543 2245556666666666666666666666665433 3456677777777777777777
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776643 235667777777777777777777777777765433 667777777777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC----CCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 041822 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR----GFCPH--GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQ 454 (500)
Q Consensus 381 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 454 (500)
.. ..+..+|..++..+.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 43 335677777777777777777777777777664 55566 5677777777777777777777777777654 2
Q ss_pred CCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 455 VSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
.+..+|..+..+|.+.|++++|..+++.+.+.
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 35677777777777777777777777766655
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=298.82 Aligned_cols=393 Identities=10% Similarity=0.002 Sum_probs=334.4
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC------------
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH------------ 133 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------ 133 (500)
+...+..++..+.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.++|+++....
T Consensus 116 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 192 (597)
T 2xpi_A 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ 192 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CC
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccc
Confidence 3456677888899999999999999988653 5788889999999999999999999988533221
Q ss_pred --CCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc---------------------------------------
Q 041822 134 --PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG--------------------------------------- 172 (500)
Q Consensus 134 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------------------------------- 172 (500)
....+..++..++..|.+.|++++|++.|+++.+.+...
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 012246678888889999999999999998886543100
Q ss_pred ---------------------------ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 173 ---------------------------IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 173 ---------------------------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
..+++..+|+.++.+|.+.|++++|.++|+++.+..+.+..+++.++.++.+.
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence 01378889999999999999999999999999975567899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLF 305 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (500)
|++++|..+++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|
T Consensus 353 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998653 4578999999999999999999999999998864 346889999999999999999999999
Q ss_pred HhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----
Q 041822 306 DEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG---- 381 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 381 (500)
+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9999875 447899999999999999999999999999987544 7899999999999999999999999999865
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 041822 382 KFVPK--TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEAS 459 (500)
Q Consensus 382 ~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 459 (500)
+..|+ ..+|..+..+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+... -+...
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~ 586 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMA 586 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CChHH
Confidence 66787 7899999999999999999999999999875 44789999999999999999999999999997532 23455
Q ss_pred HHHHHHHH
Q 041822 460 YRMLQRYL 467 (500)
Q Consensus 460 ~~~l~~~~ 467 (500)
+..+..+|
T Consensus 587 ~~~l~~~~ 594 (597)
T 2xpi_A 587 SDLLKRAL 594 (597)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=266.16 Aligned_cols=213 Identities=15% Similarity=0.185 Sum_probs=130.3
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhch
Q 041822 231 MEMFYHEMVLRGFRPSV-VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
++.+...+.+.+....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+..+.+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 33444444444443332 235555555555566666666666665555555555555555555544331100
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 041822 310 KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 389 (500)
.+.+.+++|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 01123566777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ 469 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 469 (500)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777766654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=265.29 Aligned_cols=207 Identities=16% Similarity=0.166 Sum_probs=175.9
Q ss_pred HHHHHHHHHhhh-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 041822 195 KEARSVFVKLLS-RFAPN-NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC---------F 263 (500)
Q Consensus 195 ~~A~~~~~~m~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~ 263 (500)
..+..+.+.+.+ +..+. ...++.+|.+|++.|++++|.++|++|.+.|++||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345556666665 44433 346889999999999999999999999999999999999999999998765 5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 041822 344 EEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF 401 (500)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 401 (500)
.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999988887643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-28 Score=230.47 Aligned_cols=381 Identities=12% Similarity=0.025 Sum_probs=329.5
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ 153 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (500)
...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+..|. +...+..+...|.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCC
Confidence 455677899999999999988753 556777888888899999999999999999988665 5568889999999999
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEM 233 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 233 (500)
++++|...|+++... .|.+..+|..+..++.+.|++++|.+.|+++.+..+.+...+..+...+...|++++|..
T Consensus 82 ~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL-----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHc-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999876 466788899999999999999999999999997656677888899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCC
Q 041822 234 FYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL 313 (500)
Q Consensus 234 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 313 (500)
.|+++.+.. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+...|..+...+...|++++|...+++..+..
T Consensus 157 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 999998873 3357889999999999999999999999999875 3457788899999999999999999999998864
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 393 (500)
+.+..++..+...|.+.|++++|.+.|+++.+.+.. +...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 336788999999999999999999999999987544 67789999999999999999999999998753 5568899999
Q ss_pred HHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 041822 394 MKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQAN 471 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~ 471 (500)
...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+. .|+ ...|..+...+...|
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999998853 345788999999999999999999999999864 444 555666666665544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-26 Score=221.03 Aligned_cols=364 Identities=12% Similarity=0.003 Sum_probs=318.4
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF 188 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 188 (500)
+...+.+.|++++|.+.++.+.+..|+. ...+..+...+...|++++|...++...+. .|.+..+|..+...+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-----~p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDN--TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-----NPLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHH
Confidence 3556778999999999999999987764 456677788889999999999999998876 577889999999999
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 268 (500)
.+.|++++|...|+++.+..+.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999998656678899999999999999999999999999874 2245567778888999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041822 269 LFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI 348 (500)
Q Consensus 269 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 348 (500)
.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++......
T Consensus 157 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 999999865 3457889999999999999999999999999875 33678899999999999999999999999887654
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHH
Q 041822 349 GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLL 428 (500)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 428 (500)
. +..++..+...|.+.|++++|.+.|+++.+.+ +.+..++..+..++.+.|++++|.+.++++.+.. +.+..++..+
T Consensus 235 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 235 N-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 3 67889999999999999999999999999863 3347789999999999999999999999999864 4578899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|...++.+...
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999998642 234678899999999999999999999887754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-23 Score=201.07 Aligned_cols=362 Identities=10% Similarity=0.025 Sum_probs=182.7
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
...+..+...+.+.|++++|..+|+.+.+..|. +...+..+..+|...|++++|+..|+++.+. .+.+..++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 98 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQL-----KMDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCcHHHHH
Confidence 333444444444444444444444444443332 2333444444444444444444444444433 233344444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCH---HhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNN---KTMNIL------------LLGFKESGDVTAMEMFYHEMVLRGFRPSV 247 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 247 (500)
.+..+|.+.|++++|.+.|+++.+..+.+. ..+..+ ...+.+.|++++|...|+.+.+.. +.+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 444444444444444444444443222222 333333 222555555555555555555442 2244
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHH----
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM---- 323 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 323 (500)
..+..+..+|.+.|++++|+++|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 555555555555555555555555555432 2344555555555555555555555555555432 1122223222
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 041822 324 --------ISSLIRCRDLNAAMELMDEMEEKRIGHD----NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVV 391 (500)
Q Consensus 324 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 391 (500)
...|.+.|++++|...|+++.+.... + ...|..+...+.+.|++++|.+.++++.+.. +.+..++.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 56666666777777666666654221 1 2355566666666677777777766665432 22456666
Q ss_pred HHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHH------------HHhcCC-----CHHHHHHHHHHHHHcCCC
Q 041822 392 MLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVT------------GLCSRG-----RWEEAFECSKQMLVRRRQ 454 (500)
Q Consensus 392 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~------------~~~~~g-----~~~~A~~~~~~m~~~~~~ 454 (500)
.+..+|...|++++|...++++.+.. +-+...+..+.. .|...| +.+++.+.++++... ..
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~ 411 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WH 411 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hC
Confidence 66666666677777777776666632 113344444432 233333 566777777763221 12
Q ss_pred CC-----------HHHHHHHHHHHHHcCchhHHHH
Q 041822 455 VS-----------EASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 455 ~~-----------~~~~~~l~~~~~~~~~~~~~~~ 478 (500)
|| ...|..+..+|...++.+....
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 22 1256666777777776665443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-23 Score=204.63 Aligned_cols=368 Identities=12% Similarity=0.008 Sum_probs=225.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
..+..+...+...|++++|++.|+.+.+.. |+...+..+..++...|++++|.+.++++.+..|. +...+..+..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--HHHHHHHHHH
Confidence 445567788889999999999999999863 78999999999999999999999999999998765 4567888999
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhh-----------------------------------------------
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEE----------------------------------------------- 180 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 180 (500)
+|...|++++|...|+++.... +.+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-----DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-----SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 9999999999999999987653 222222
Q ss_pred --------------------------------HHHHHHHHHc---CCCHHHHHHHHHHhhh-----C--C-------CCC
Q 041822 181 --------------------------------FNVLLQAFCT---QKEMKEARSVFVKLLS-----R--F-------APN 211 (500)
Q Consensus 181 --------------------------------~~~ll~~~~~---~~~~~~A~~~~~~m~~-----~--~-------~~~ 211 (500)
+......+.. .|++++|..+|+++.+ . . +.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 2222222222 5556666666655544 1 1 222
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041822 212 NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG 291 (500)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 291 (500)
..++..+...+...|++++|...++.+.+.. |+...+..+..+|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 3455555555556666666666666555542 225555555555556666666666666555443 2234455555555
Q ss_pred HHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 041822 292 AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGV 371 (500)
Q Consensus 292 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 371 (500)
+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHH
Confidence 556666666666666555543 223445555555555666666666666555544222 344555555555566666666
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHH---cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 041822 372 CKLYDRMIEGKF-VPK----TRTVVMLMKFFCV---NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443 (500)
Q Consensus 372 ~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 443 (500)
...++++.+... .++ ...+..+..++.. .|++++|...++.+.+.. +.+..++..+..+|.+.|++++|..
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 666555543210 011 2245555555555 566666666666555532 2234455555555666666666666
Q ss_pred HHHHHHHc
Q 041822 444 CSKQMLVR 451 (500)
Q Consensus 444 ~~~~m~~~ 451 (500)
.|++..+.
T Consensus 471 ~~~~a~~~ 478 (514)
T 2gw1_A 471 LFEESADL 478 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-22 Score=196.47 Aligned_cols=314 Identities=10% Similarity=0.021 Sum_probs=267.3
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+...+..++..+...|++++|++.|+.+.+.. +.+..++..+..++...|++++|...|+.+.+..|. ....+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Confidence 456677788899999999999999999999853 567889999999999999999999999999998766 4567888
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCCh---hhHHHHH------------HHHHcCCCHHHHHHHHHHhhhCCC
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS---EEFNVLL------------QAFCTQKEMKEARSVFVKLLSRFA 209 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~ll------------~~~~~~~~~~~A~~~~~~m~~~~~ 209 (500)
+...|.+.|++++|...|+++... .+.+. .++..++ ..+.+.|++++|...|+++.+..+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999765 34445 6666664 448999999999999999998667
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-
Q 041822 210 PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTL- 288 (500)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l- 288 (500)
.+..++..+..++.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|++.|+++.+.. +.+...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 789999999999999999999999999998763 3478899999999999999999999999998764 2344445444
Q ss_pred -----------HHHHHccCCHHHHHHHHHhchhCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 289 -----------IHGAGLVRNIHQARQLFDEMPKRNLKPD-----IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352 (500)
Q Consensus 289 -----------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 352 (500)
...+.+.|++++|...|+++.+.. |+ ...+..+...+.+.|++++|...++++.+.... +.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cH
Confidence 788999999999999999998853 34 447889999999999999999999998876432 67
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLM 394 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll 394 (500)
..|..+..+|...|++++|.+.|+++.+. .|+ ...+..+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 89999999999999999999999999874 555 55555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-22 Score=198.36 Aligned_cols=371 Identities=10% Similarity=-0.055 Sum_probs=310.8
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
...+......+.+.|++++|+..|+++.+..| +...+..+..+|.+.|++++|+..|+++.+. .|.+..+|.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 77 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALEL-----KPDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----ChHHHHHHH
Confidence 45677888899999999999999999999876 4678888999999999999999999999887 477889999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCC---------------------------------------------------
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPN--------------------------------------------------- 211 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~--------------------------------------------------- 211 (500)
.+..++.+.|++++|...|+++.+..+++
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 99999999999999999999987633322
Q ss_pred ----------------------------HHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCH
Q 041822 212 ----------------------------NKTMNILLLGFKE---SGDVTAMEMFYHEMVL-----RGF--------RPSV 247 (500)
Q Consensus 212 ----------------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~~~~ 247 (500)
...+......+.. .|+++.|...++++.+ ... +.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 2333333333333 8999999999999988 311 2245
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHH
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSL 327 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 327 (500)
..+..+...+...|++++|...|+++.+.+ |+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 678888999999999999999999999876 448888999999999999999999999998875 34677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHH
Q 041822 328 IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGL 407 (500)
Q Consensus 328 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 407 (500)
...|++++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999987554 66788889999999999999999999998753 334678888999999999999999
Q ss_pred HHHHHHHHCCCC-CC----HhHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHH
Q 041822 408 NLWGYLIDRGFC-PH----GHALDLLVTGLCS---RGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479 (500)
Q Consensus 408 ~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 479 (500)
..++.+.+.... ++ ...+..+..+|.. .|++++|...++++.+.. +.+..++..+..++...|++++|...
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999874211 11 3388899999999 999999999999998764 23567788999999999999999999
Q ss_pred HHHHHHhh
Q 041822 480 DRMIKNLQ 487 (500)
Q Consensus 480 ~~~~~~~~ 487 (500)
++......
T Consensus 472 ~~~a~~~~ 479 (514)
T 2gw1_A 472 FEESADLA 479 (514)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 88877653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-21 Score=192.28 Aligned_cols=398 Identities=12% Similarity=0.061 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+.+.|++++|++.|+.+.+.. |.+...+..+..++...|++++|++.++++.+..|. +...+..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHH
Confidence 4556777888999999999999999999864 668889999999999999999999999999998776 456788889
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-------CCCCHH------
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-------FAPNNK------ 213 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~------ 213 (500)
.++...|++++|...|+.+... ....+..+..+...+....|...++.+... ..|+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLN---------GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcC---------CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 9999999999999999644211 011111122222233333444444443221 001111
Q ss_pred ------------------------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC--------HHHHHHH
Q 041822 214 ------------------------TMNILLLGFKE--------SGDVTAMEMFYHEMVLRGFRPS--------VVTYNIR 253 (500)
Q Consensus 214 ------------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~g~~~~--------~~~~~~l 253 (500)
....+...+.. .|++++|..+++.+.+.. |+ ..++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHH
Confidence 11111111111 123444444444444331 11 1123333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCH
Q 041822 254 IDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333 (500)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 333 (500)
...+...|++++|.+.|++..+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 344444455555555555554432 334444444444555555555555555444432 12344444555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHH
Q 041822 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYL 413 (500)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 413 (500)
++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 327 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555544443222 23444444455555555555555555444331 112334444444445555555555555544
Q ss_pred HHCC-----CCCCHhHHHHHHHHHhcC----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHH
Q 041822 414 IDRG-----FCPHGHALDLLVTGLCSR----------GRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 414 ~~~~-----~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 478 (500)
.+.. .......+.....++... |++++|...++++.+... .+...+..+..++...|+.++|..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHH
Confidence 4321 000111122223334444 555555555555444321 123344444455555555555554
Q ss_pred HHHHHHH
Q 041822 479 LDRMIKN 485 (500)
Q Consensus 479 ~~~~~~~ 485 (500)
.++....
T Consensus 484 ~~~~al~ 490 (537)
T 3fp2_A 484 LFEDSAI 490 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-19 Score=167.17 Aligned_cols=313 Identities=9% Similarity=0.008 Sum_probs=183.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
..+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+..|. ....+..+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~ 79 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cchHHHHHHH
Confidence 345566677777788888888888777643 456677777777788888888888888887776554 3356677777
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccC---CChhhHHHH------------HHHHHcCCCHHHHHHHHHHhhhCCCCCH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRK---FGSEEFNVL------------LQAFCTQKEMKEARSVFVKLLSRFAPNN 212 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~A~~~~~~m~~~~~~~~ 212 (500)
.+...|++++|...|++..+. .+ .+...+..+ ...+...|++++|.+.++++.+..+.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA 154 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 777778888888888777654 23 344444444 4566666777777777776665455566
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 292 (500)
..+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~- 231 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV- 231 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH-
Confidence 666666666666777777776666666553 2355666666666666667776666666666543 1122222111000
Q ss_pred HccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCh
Q 041822 293 GLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN----VTYHTMFFGLMKSSGL 368 (500)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 368 (500)
. .......+...+.+.|++++|...++++.+.... +. ..+..+...+.+.|++
T Consensus 232 ----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 232 ----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp ----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 0 0001112234455555555555555555543222 11 1123344555555555
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC
Q 041822 369 EGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 369 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 416 (500)
++|.+.+++..+.. +.+..++..+..++...|++++|.+.++.+.+.
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555555431 223455555555555555555555555555553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-19 Score=166.75 Aligned_cols=329 Identities=9% Similarity=0.018 Sum_probs=228.0
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
...+..+...+...|++++|...|+.+.+..|. +...+..+...+...|++++|...|+++.+. .+.+...|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~ 75 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcchHHH
Confidence 455666677777777777777777777776554 3446666666777777777777777777665 344566677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFA---PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
.+...+...|++++|...|+++.+..+ .+...+..+..... ...+..+...+..
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 777777777777777777777765433 33333333321100 1112233556677
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMEL 339 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 339 (500)
.|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 3456667777777777788888887777777664 33667777777788888888888888
Q ss_pred HHHHHHCCCCCCHHHHH------------HHHHHHHHcCChhHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHHcCC
Q 041822 340 MDEMEEKRIGHDNVTYH------------TMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-T----RTVVMLMKFFCVNFR 402 (500)
Q Consensus 340 ~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~----~~~~~ll~~~~~~~~ 402 (500)
|++..+.... +...+. .+...+.+.|++++|.+.++++.+.. |+ . ..+..+..++...|+
T Consensus 211 ~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 211 VRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccC
Confidence 8777765332 333222 23667889999999999999998753 33 2 335567788899999
Q ss_pred HhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 041822 403 VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQ 469 (500)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~ 469 (500)
+++|...++...+.. +.+..++..+..+|...|++++|.+.|+++.+. .|+ ...+..+..+...
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 999999999999864 346788999999999999999999999999864 455 4455565555543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-19 Score=177.24 Aligned_cols=374 Identities=10% Similarity=0.029 Sum_probs=286.8
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....+..+..++...|++++|++.|+.+.+.. |.+..++..+..++...|++++|...|+ .....|+..+ .
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~-----~ 128 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG-----A 128 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh-----H
Confidence 345777788899999999999999999999864 5678899999999999999999999997 4444443322 2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcc--ccCCChh------------------------------hHHHHHHHHHcC-
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVG--IRKFGSE------------------------------EFNVLLQAFCTQ- 191 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~------------------------------~~~~ll~~~~~~- 191 (500)
.+..+...+...+|...++.+....... ...|+.. ....+...+...
T Consensus 129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence 2344556677778888888774421000 0001111 222333332222
Q ss_pred -------CCHHHHHHHHHHhhhCCCCCHH-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 192 -------KEMKEARSVFVKLLSRFAPNNK-------TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 192 -------~~~~~A~~~~~~m~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
|++++|..+|+++.+..+.+.. ++..+...+...|++++|...++.+.+. .|+...+..+...+
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHH
Confidence 4789999999999875555543 5777778888999999999999999987 56688899999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998865 3467889999999999999999999999998875 335678999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------CC
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK-----FVPKTRTVVMLMKFFCVN----------FR 402 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~ll~~~~~~----------~~ 402 (500)
..++++.+.... +...+..+...+...|++++|.+.|+++.+.. .......+......+... |+
T Consensus 365 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 365 AFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 999999887543 56788889999999999999999999987532 111223344455667777 99
Q ss_pred HhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 041822 403 VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRR 452 (500)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 452 (500)
+++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.|++..+..
T Consensus 444 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 444 FNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999864 3467889999999999999999999999998754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-19 Score=161.93 Aligned_cols=286 Identities=10% Similarity=-0.021 Sum_probs=180.0
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
+.+...+...+..+...|++++|.++++++.+..|.... .+..++..+...|++++|...++++... .+.+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~ 91 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--CLPVHIGTLVELNKANELFYLSHKLVDL-----YPSNPV 91 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--THHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCCHH
Confidence 455666667777777777788888877777776655433 3444556667777777777777777665 355667
Q ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQK-EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 180 ~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
+|..+...+...| ++++|.+.|+++.+..+.+...|..+...+...|++++|...++++.+... .+...+..+...|.
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 7777777777777 777777777777765555667777777777777777777777777766532 23455555666777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC--------CCCCHhhHHHHHHHHHhc
Q 041822 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN--------LKPDIGAYNAMISSLIRC 330 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~ 330 (500)
..|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...|...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 7777777777777766653 3345566666666666666666666666655421 022234556666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 041822 331 RDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP-KTRTVVMLMKFF 397 (500)
Q Consensus 331 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~ 397 (500)
|++++|...|++..+.... +...+..+...+.+.|++++|.+.|++..+. .| +...+..+..++
T Consensus 250 g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 6666666666665554322 4455555556666666666666666655543 23 344444444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-16 Score=155.01 Aligned_cols=353 Identities=9% Similarity=-0.000 Sum_probs=296.4
Q ss_pred HHHHHHHHHHHhh----cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHhHhhCCCCcc
Q 041822 67 TLVENVLGRLFAA----HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILAR----MRYFDQAWELMSHVQRTHPSLLT 138 (500)
Q Consensus 67 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 138 (500)
......|...+.. .+++++|+..|+.+.+. .++..+..+...+.. .+++++|.+.|++..+.+ +
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~ 110 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L 110 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 3445566677776 78999999999999885 367788888898988 899999999999998753 3
Q ss_pred HHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCC
Q 041822 139 LKSMSIMLSRISK----FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT----QKEMKEARSVFVKLLSRFAP 210 (500)
Q Consensus 139 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~ 210 (500)
...+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .++.++|.+.|++..+. .
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--G 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 4566667777777 789999999999987653 67788899999987 88999999999999863 3
Q ss_pred CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCH
Q 041822 211 NNKTMNILLLGFKE----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVACLPSL 282 (500)
Q Consensus 211 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~ 282 (500)
+...+..+...|.. .++.++|..+|+...+.| +...+..+...|.. .+++++|.++|++..+.| +.
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 78889999999988 899999999999999876 67788888888886 899999999999998875 45
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHH
Q 041822 283 QTITTLIHGAGL----VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRC-----RDLNAAMELMDEMEEKRIGHDNV 353 (500)
Q Consensus 283 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~ 353 (500)
..+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|...|++..+.| +..
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 666677777777 899999999999998875 566788888888887 89999999999998875 556
Q ss_pred HHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhhHHHHHHHHHHCCCCCCHhHHH
Q 041822 354 TYHTMFFGLMKSS---GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV----NFRVDLGLNLWGYLIDRGFCPHGHALD 426 (500)
Q Consensus 354 ~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 426 (500)
.+..+...|...| ++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.| +...+.
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 7777888887766 7899999999998864 56778888888888 799999999999999976 466788
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHHcCCC
Q 041822 427 LLVTGLCS----RGRWEEAFECSKQMLVRRRQ 454 (500)
Q Consensus 427 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~ 454 (500)
.+...|.+ .++.++|...|++..+.+..
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88888888 89999999999999987643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-16 Score=153.03 Aligned_cols=365 Identities=11% Similarity=0.005 Sum_probs=304.8
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc----cccHH
Q 041822 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILAR----MRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK----FQSYE 156 (500)
Q Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 156 (500)
.+++.+...... .++..+..+...+.. .+++++|...|+...+.+ +...+..+...|.. .++++
T Consensus 25 ~~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 25 VNLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CCHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 345566665553 467888888888887 899999999999998752 34567777888888 89999
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh----cCCH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT----QKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE----SGDV 228 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~ 228 (500)
+|...|++..+.+ +...+..|...|.. .+++++|...|++..+. -+...+..+...|.. .+++
T Consensus 97 ~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 97 QAVIWYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp HHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999987653 67788889999988 88999999999998862 267888889988887 7899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL----VRNIHQ 300 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 300 (500)
++|..+|++..+.| +...+..+...|.. .+++++|+++|++..+.| +...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999999876 77888889999988 899999999999999876 56677777777775 789999
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CChhHH
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIR----CRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKS-----SGLEGV 371 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a 371 (500)
|..+|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998875 56677778888887 899999999999998764 566777788888887 899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCCHHHHHHH
Q 041822 372 CKLYDRMIEGKFVPKTRTVVMLMKFFCVNF---RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----RGRWEEAFEC 444 (500)
Q Consensus 372 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 444 (500)
.+.|++..+.+ +...+..+...+...| +.++|.+.+++..+.| +...+..+...|.. .+++++|...
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999998865 4456667777777656 7899999999999875 56788888888988 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCchhHHHHHHHHHHHhh
Q 041822 445 SKQMLVRRRQVSEASYRMLQRYLVQ----ANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 445 ~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 487 (500)
|++..+.| +...+..+...|.. .++.++|..+++......
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999876 46677788888888 799999999988887765
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-18 Score=158.56 Aligned_cols=265 Identities=8% Similarity=-0.009 Sum_probs=138.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+......+...|++++|+++|+++.+. .+.+...+..++..+...|++++|..+++++.+..+.+...+..+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEK-----DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 444455555566666666666666554 344555555566666666666666666666665444555666666666
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 222 FKESG-DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 222 ~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
+...| ++++|...+++..+.. +.+...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 66666 6666666666665543 2234455556666666666666666666655543 1223344445555555555555
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCChhHHH
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR--------IGHDNVTYHTMFFGLMKSSGLEGVC 372 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~ 372 (500)
|.+.++++.+.. +.+..++..+...|...|++++|...+++..+.. .......+..+...+...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 555555555543 2234455555555555555555555555544321 0112234444444444444555554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH
Q 041822 373 KLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 373 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 415 (500)
+.+++..+.. +.+...+..+..++...|++++|.+.++++.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 4444444321 11233344444444444444444444444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=164.09 Aligned_cols=304 Identities=10% Similarity=-0.036 Sum_probs=168.6
Q ss_pred cCChHHHHH-HHHHhhcCCCCCC--CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 80 HSNGLKALE-FFKFTLQHPHFTP--TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 80 ~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
.+++++|++ .|+.......-.| +...+..+...+...|++++|...++++.+..|. +...+..+...+...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCHH
Confidence 466777777 6766654321112 2345666777777777777777777777776554 3456666777777777777
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
+|...|+++... .+.+..++..+...+...|++++|...|+++.+..+.+...+..+... ..
T Consensus 116 ~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 116 LAISALRRCLEL-----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp HHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------------
T ss_pred HHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh------
Confidence 777777777665 355667777777777777777777777777765433333333221000 00
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC
Q 041822 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP 315 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 315 (500)
. ..+ ...+.. +..+...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+.. +.
T Consensus 178 -~----~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 000 000111 222225566666666666665543110 35556666666666666666666666665542 22
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC----------C
Q 041822 316 DIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV----------P 385 (500)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------p 385 (500)
+..++..+...|...|++++|...|+++.+.... +...+..+...|.+.|++++|...|+++.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 4556666666666666666666666666554322 4555666666666666666666666665532100 0
Q ss_pred CHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 041822 386 KTRTVVMLMKFFCVNFRVDLGLNLWGY 412 (500)
Q Consensus 386 ~~~~~~~ll~~~~~~~~~~~a~~~~~~ 412 (500)
...++..+..++...|+.+.|..++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 145666666666777777776666653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-19 Score=165.50 Aligned_cols=267 Identities=9% Similarity=-0.043 Sum_probs=187.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..+..+...+.+.|++++|...|+++.+..+.+..++..+..++.+.|++++|...++++.+.. +.+..++..+...|.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3445555555555555555555555554444455555555555555555555555555555442 224455555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHH---------------HHHHHHHccCCHHHHHHHHHhchhCCCCC-CHhhHHH
Q 041822 259 KKGCFGDAMRLFEEMERVACLPSLQTIT---------------TLIHGAGLVRNIHQARQLFDEMPKRNLKP-DIGAYNA 322 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~---------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 322 (500)
..|++++|++.++++.+... .+...+. ..+..+...|++++|...++++.+..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555555554331 1111111 02333448899999999999998864221 5788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 041822 323 MISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFR 402 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 402 (500)
+...|.+.|++++|...|+++.+.... +...+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999876443 67889999999999999999999999998753 3457889999999999999
Q ss_pred HhhHHHHHHHHHHCCCCC----------CHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 403 VDLGLNLWGYLIDRGFCP----------HGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
+++|...++.+.+..... ...+|..+..+|...|++++|..++++..
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999998742111 26789999999999999999999877543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-16 Score=153.92 Aligned_cols=409 Identities=10% Similarity=0.019 Sum_probs=295.9
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
+...|..++.. ...|++++|..+|+.+.+. +|.+...|...+..+.+.|++++|.++|+++.+..| +...|...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p---~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL---HIDLWKCY 85 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC---CHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---ChHHHHHH
Confidence 34456666664 6789999999999999986 477888999999999999999999999999999776 34456555
Q ss_pred HHHH-hccccHHHHHH----HHHHHHHHHhccccCCChhhHHHHHHHHHc---------CCCHHHHHHHHHHhhhCCCCC
Q 041822 146 LSRI-SKFQSYEETLE----AFDRMEREIFVGIRKFGSEEFNVLLQAFCT---------QKEMKEARSVFVKLLSRFAPN 211 (500)
Q Consensus 146 ~~~~-~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~A~~~~~~m~~~~~~~ 211 (500)
+... ...|+.++|.+ +|++..... |..+.+...|...+....+ .|+++.|..+|++.++ .+.+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~--g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKI--GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHT--TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhh
Confidence 5422 34566666655 666655431 2234567788888877655 6889999999999997 3322
Q ss_pred --HHhHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHh
Q 041822 212 --NKTMNILLLGF-------------KESGDVTAMEMFYHEMV------LRG---FRPS--------VVTYNIRIDGYCK 259 (500)
Q Consensus 212 --~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~li~~~~~ 259 (500)
...|....... .+.++++.|..++.++. +.. +.|+ ...|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 23343322211 12345667777766532 221 2343 2456665544332
Q ss_pred c----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHhchhCCCCCCH
Q 041822 260 K----GCF----GDAMRLFEEMERVACLPSLQTITTLIHGAGL-------VRNIH-------QARQLFDEMPKRNLKPDI 317 (500)
Q Consensus 260 ~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~ 317 (500)
. ++. .++..+|++..... +-+...|..+...+.+ .|+++ +|..+|++..+.-.+-+.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 2 232 37788999988753 4467788888887775 78877 899999999873234468
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD-NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKF 396 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 396 (500)
..|..++..+.+.|++++|..+|+++.+.... + ...|...+..+.+.|++++|.++|++..+.. ..+...|......
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 88999999999999999999999999986432 3 3578888888899999999999999998753 2223333332222
Q ss_pred -HHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHHcCc
Q 041822 397 -FCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR-QVS--EASYRMLQRYLVQANA 472 (500)
Q Consensus 397 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~--~~~~~~l~~~~~~~~~ 472 (500)
+...|+.+.|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 335899999999999998853 33678899999999999999999999999998642 332 4477788888888999
Q ss_pred hhHHHHHHHHHHHhh
Q 041822 473 NEKLEDLDRMIKNLQ 487 (500)
Q Consensus 473 ~~~~~~~~~~~~~~~ 487 (500)
.+.+..+.+.+.+..
T Consensus 479 ~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 479 LASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999988876654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-18 Score=158.64 Aligned_cols=265 Identities=10% Similarity=-0.040 Sum_probs=155.2
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
+...|..+...+.+.|++++|...|+++.+..+.+..+|..+..++.+.|++++|...|+++.+.. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344567777777777777777777777776556667777777777777777777777777776653 2346677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC-CCHhhHHHHH
Q 041822 257 YCKKGCFGDAMRLFEEMERVACLPS-----------LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK-PDIGAYNAMI 324 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 324 (500)
|...|++++|++.|+++.+.. |+ ...+..+...+...|++++|.+.++++.+.... .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 777777777777777776643 22 112223345556666666666666666554311 1455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 041822 325 SSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 404 (500)
..|...|++++|.+.|+++.+.... +...|..+..+|...|++++|.+.|+++.+.. +.+..++..+..++...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666554332 45556666666666666666666666655432 222555555666666666666
Q ss_pred hHHHHHHHHHHCCC---C--------CCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 041822 405 LGLNLWGYLIDRGF---C--------PHGHALDLLVTGLCSRGRWEEAFECSK 446 (500)
Q Consensus 405 ~a~~~~~~~~~~~~---~--------~~~~~~~~li~~~~~~g~~~~A~~~~~ 446 (500)
+|...++++.+... . .+..+|..+..++...|+.+.+..+.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666554210 0 023455566666666666655555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-18 Score=158.31 Aligned_cols=270 Identities=10% Similarity=-0.057 Sum_probs=119.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
.++..+.+.|++++|++.|+.+.+.. +.+..++..+..++...|++++|++.|+++.+..|. +...+..+...|..
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHc
Confidence 34444555555555555555555432 344555555555555555555555555555554433 23345555555555
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
.|++++|...|+++.+.. +.+...+..+ ......+..+...+.+.|++++|
T Consensus 146 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN-----PKYKYLVKNK------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-----HHHHCC-------------------------------------------CCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-----ccchHHHhhh------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 555555555555554431 1111111111 00011122234444444444444
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 232 EMFYHEMVLRGFR-PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 232 ~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
...++++.+.... ++..++..+...|...|++++|++.|++..+.. +.+..+|..+..+|...|++++|...|+++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444443211 134444444444444555555555554444432 22344444455555555555555555554444
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG-----------HDNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 311 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
.. +.+..++..+..+|.+.|++++|...|+++.+.... .+...|..+..++...|+.+.+.+...
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 32 123444555555555555555555555544432100 023445555555555565555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-17 Score=151.44 Aligned_cols=264 Identities=11% Similarity=-0.029 Sum_probs=156.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
...+..+...+...|++++|..+|+++.+..+.+..++..+..++...|++++|...++++.+.. +.+...+..+...|
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456666666677777777777777665445566666667777777777777777777666653 23556666666777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC-HHHHHHH--------------HH-HHHccCCHHHHHHHHHhchhCCCCCCHhhHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPS-LQTITTL--------------IH-GAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 321 (500)
...|++++|.+.++++.+.. |+ ...+..+ .. .+...|++++|.+.++++.+.. +.+..++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 77777777777777766543 22 1112111 11 2555566666666666666543 22555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 041822 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF 401 (500)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 401 (500)
.+...|...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 6666666666666666666666554322 45556666666666666666666666665432 223555566666666666
Q ss_pred CHhhHHHHHHHHHHCCCCC-----------CHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 402 RVDLGLNLWGYLIDRGFCP-----------HGHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
++++|.+.++++.+..... +...|..+..++.+.|++++|..++++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666666665532111 245556666666666666666666543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-17 Score=150.93 Aligned_cols=261 Identities=8% Similarity=-0.045 Sum_probs=125.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
+......+...|++++|..+++++.+..|. +...+..+...+...|++++|...|+++.+. .+.+..++..+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la 96 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALA 96 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCCHHHHHHHH
Confidence 334444445555555555555555544333 2334444444555555555555555555443 233444555555
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL--------------LL-GFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
..+...|++++|.+.++++.+..+.+...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 555555555555555555554323233333222 11 2444555555555555555442 2244555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRC 330 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 330 (500)
..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 555555555566666655555555433 2234445555555555555555555555554432 22344455555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 331 RDLNAAMELMDEMEEKRIGH-----------DNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 331 g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
|++++|.+.|+++.+..... +...|..+..++.+.|++++|..+++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55555555555544432111 23444445555555555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=177.84 Aligned_cols=161 Identities=11% Similarity=0.159 Sum_probs=133.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhh----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLS----RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
-..+||++|++||+.|++++|.++|+.|.+ |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 445899999999999999999999988753 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCC------HhhHHHHHH
Q 041822 253 RIDGYCKKGCF-GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPD------IGAYNAMIS 325 (500)
Q Consensus 253 li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 325 (500)
+|+++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998766554 444445555 3334443 556667777
Q ss_pred HHHhcCC---------HHHHHHHHHH
Q 041822 326 SLIRCRD---------LNAAMELMDE 342 (500)
Q Consensus 326 ~~~~~g~---------~~~a~~~~~~ 342 (500)
.|.+.+. .++-.+.|++
T Consensus 281 l~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 281 VYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHccCCCCcCccccCCHHHHHHHHHH
Confidence 7776652 3555555553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-16 Score=149.46 Aligned_cols=274 Identities=11% Similarity=-0.014 Sum_probs=182.0
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcC-------CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC----
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQH-------PHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH---- 133 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 133 (500)
.....++.|..++...|++++|++.|+++.+. ..-+....+|..+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567889999999999999999999887651 0123345678999999999999999999998887631
Q ss_pred -C-CCccHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH---HHcCCCHHHHHHHHHHhhh
Q 041822 134 -P-SLLTLKSMSIMLSRISK--FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA---FCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 134 -~-~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~A~~~~~~m~~ 206 (500)
+ ......++.....++.. .+++++|+..|++..+. .|.+...+..+..+ +...++.++|++.+++..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1 11233444444434433 45799999999998876 45667777666655 3456778889999988887
Q ss_pred CCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 041822 207 RFAPNNKTMNILLLGFKE----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL 282 (500)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 282 (500)
-.+.+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|++.+++..+.. +-+.
T Consensus 204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 556677777777665554 456788999998887764 3467788889999999999999999999988765 2345
Q ss_pred HHHHHHHHHHHcc-------------------CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 283 QTITTLIHGAGLV-------------------RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 283 ~~~~~ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
.++..+...|... +..+.|...++...+.+ +.+..++..+...|...|++++|++.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5566655554321 11334444444444332 123344445555555555555555555555
Q ss_pred HHC
Q 041822 344 EEK 346 (500)
Q Consensus 344 ~~~ 346 (500)
.+.
T Consensus 361 L~~ 363 (472)
T 4g1t_A 361 FSK 363 (472)
T ss_dssp HHS
T ss_pred Hhc
Confidence 443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.3e-19 Score=174.85 Aligned_cols=151 Identities=8% Similarity=0.050 Sum_probs=113.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 041822 316 DIGAYNAMISSLIRCRDLNAAMELMDEMEE---KRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVM 392 (500)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 392 (500)
-..||+++|++|++.|++++|.++|++|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456888888888888888888888877764 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCH-hhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 041822 393 LMKFFCVNFRV-DLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS------EASYRMLQR 465 (500)
Q Consensus 393 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~l~~ 465 (500)
+|.++|+.|+. +.|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ ..++.|+ ..|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 88888888874 67888888888888888888888887655443 333333444 3345544 334445555
Q ss_pred HHHHcC
Q 041822 466 YLVQAN 471 (500)
Q Consensus 466 ~~~~~~ 471 (500)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-15 Score=144.41 Aligned_cols=382 Identities=12% Similarity=0.054 Sum_probs=276.2
Q ss_pred HHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 041822 90 FKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREI 169 (500)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 169 (500)
|+..++.. |-+...|..++.. ...|++++|..+|+++.+..|. +...|...+..+.+.|++++|..+|++....
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~- 75 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK- 75 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Confidence 34444432 5678889999984 7889999999999999998765 5678899999999999999999999998765
Q ss_pred hccccCCChhhHHHHHHHH-HcCCCHHHHHH----HHHHhhh--CC-CCCHHhHHHHHHHHHh---------cCCHHHHH
Q 041822 170 FVGIRKFGSEEFNVLLQAF-CTQKEMKEARS----VFVKLLS--RF-APNNKTMNILLLGFKE---------SGDVTAME 232 (500)
Q Consensus 170 ~~~~~~~~~~~~~~ll~~~-~~~~~~~~A~~----~~~~m~~--~~-~~~~~~~~~l~~~~~~---------~~~~~~a~ 232 (500)
.|+...|...+... ...|+.+.|.+ +|+...+ |. +++...|...+....+ .|+++.|.
T Consensus 76 -----~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 76 -----VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred -----CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 34777888777543 45677776655 7777764 33 3466778877776654 68899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-------------HhcCChhHHHHHHHHHH------HcC---CCCC--------H
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGY-------------CKKGCFGDAMRLFEEME------RVA---CLPS--------L 282 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~~---~~~~--------~ 282 (500)
.+|++.++.........|....... .+.+++..|..++.++. +.. ++|+ .
T Consensus 151 ~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 151 RVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 9999998842121234444333211 12456777877777632 221 2443 2
Q ss_pred HHHHHHHHHHHcc----CCH----HHHHHHHHhchhCCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHHHH
Q 041822 283 QTITTLIHGAGLV----RNI----HQARQLFDEMPKRNLKPDIGAYNAMISSLIR-------CRDLN-------AAMELM 340 (500)
Q Consensus 283 ~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~ 340 (500)
..|...+...... ++. +.+..+|++..... +.+...|..+...+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 4555555433221 232 47778898888763 3467888888888875 79987 899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-T-RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
++..+.-..-+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+++.|..+|++..+..
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 99886212236788999999999999999999999999984 554 3 578888888889999999999999999853
Q ss_pred CCCHhHHHHHHHH-HhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 419 CPHGHALDLLVTG-LCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 419 ~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
+.+...|...+.. +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.+.|..+++......
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2233333332222 346899999999999998753 2256788889999999999999999999887664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-16 Score=139.41 Aligned_cols=248 Identities=11% Similarity=0.078 Sum_probs=132.3
Q ss_pred HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC
Q 041822 114 ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE 193 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 193 (500)
...|+++.|++.++.+....|.. .......+.++|...|+++.|+..++.. .+++..++..+...+...++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~-~~e~~~~l~r~yi~~g~~~~al~~~~~~--------~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPER-DVERDVFLYRAYLAQRKYGVVLDEIKPS--------SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHH-HHHHHHHHHHHHHHTTCHHHHHHHSCTT--------SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHhcccCCchh-hHHHHHHHHHHHHHCCCHHHHHHHhccc--------CChhHHHHHHHHHHHcCCCc
Confidence 34455555555555443322211 1112233445555555555555544321 23445555566666666666
Q ss_pred HHHHHHHHHHhhh-C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 194 MKEARSVFVKLLS-R-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 194 ~~~A~~~~~~m~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
.++|++.++++.. + .|.+...+..+..++...|++++|...+++ +.+...+..++..|.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666554 2 233445555555666666666666666554 2355566666666666666666666666
Q ss_pred HHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041822 272 EMERVACLPSLQTI---TTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI 348 (500)
Q Consensus 272 ~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 348 (500)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+...
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666543 332111 112222333456666666666665552 33555666666666666666666666666555433
Q ss_pred CCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHh
Q 041822 349 GHDNVTYHTMFFGLMKSSGLEG-VCKLYDRMIE 380 (500)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~ 380 (500)
. +..++..++..+...|+.++ +.++++++.+
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2 45555556666666666544 3455555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=154.68 Aligned_cols=239 Identities=10% Similarity=0.052 Sum_probs=71.9
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHH
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 158 (500)
+.|+.++|.++++++ +++.+|..++.++.+.|++++|++.|.+. .+...+..++..+...|++++|
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHH
Confidence 345566666666654 33346666666666666666666666432 1233455555666666666666
Q ss_pred HHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 159 LEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEM 238 (500)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (500)
...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 81 VKYLQMARKK------ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHh------CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6655544432 1234556666666666666666655553 245556666666666666666666666644
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh
Q 041822 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG 318 (500)
Q Consensus 239 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 318 (500)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 25666666666666666666666655 145666666666666666666644433322 1222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK 364 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 364 (500)
-...++..|.+.|++++|..+++...... +-....|+-+.-.|++
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 23346666666666666666666555443 2234455555444444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-15 Score=141.28 Aligned_cols=361 Identities=9% Similarity=0.040 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
.+.+|..|+..+...|++++|++.|.+. +|..+|..++..+...|++++|+..++...+..+ +..+...+
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~---~~~i~~~L 100 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc---cchhHHHH
Confidence 3458889999999999999999999653 5777999999999999999999998887776422 23456778
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
+.+|.+.|+++++.+.++ +|+..+|+.++..|...|++++|...|..+ ..|..++.++.+.
T Consensus 101 i~~Y~Klg~l~e~e~f~~-----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~L 161 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL 161 (449)
T ss_dssp --------CHHHHTTTTT-----------CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHc-----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHh
Confidence 999999999999887774 356679999999999999999999999988 3699999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLF 305 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (500)
|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|..++
T Consensus 162 g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 162 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999888 278999999999999999999966555422 33344557889999999999999999
Q ss_pred HhchhCCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 306 DEMPKRNLKPDIGAYNAMISSLIRC--RDLNAAMELMDEMEEKRIGH------DNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
+...... +-....|+-|...|++- +++.+.++.|..- .++.| +...|.-++..|.+.++++.|...+
T Consensus 231 e~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm-- 305 (449)
T 1b89_A 231 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM-- 305 (449)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH--
Confidence 9988765 44677788887777765 3455555555321 12211 4567889999999999999887754
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH-------------HHHHHHhcCCCHHHHHHH
Q 041822 378 MIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD-------------LLVTGLCSRGRWEEAFEC 444 (500)
Q Consensus 378 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~li~~~~~~g~~~~A~~~ 444 (500)
.+. .|+..--..+.....+..+.+---+...-.++. .|. ..+ ..+..+.+.|...-+...
T Consensus 306 -~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~y 378 (449)
T 1b89_A 306 -MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPY 378 (449)
T ss_dssp -HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHH
T ss_pred -HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHH
Confidence 332 122111122233334444443333333322221 121 233 334444555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHH
Q 041822 445 SKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDR 481 (500)
Q Consensus 445 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 481 (500)
+......+ +...-.++-..|....+++..+.-.+
T Consensus 379 l~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 379 LRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55554332 33444566667777777777665443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=137.08 Aligned_cols=250 Identities=9% Similarity=0.001 Sum_probs=151.1
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPN--NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
.....|++..|+..++..... .|+ ......+.++|...|+++.|...++. .-.|+..++..+...+...|+.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~-~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS-SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 344566666666666655432 122 23445556667777777666654432 12445566666666666677777
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 265 DAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 265 ~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777766655333 344455555666777777777777665 245666667777777777777777777777
Q ss_pred HHCCCCCCHHHH---HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 344 EEKRIGHDNVTY---HTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 344 ~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++++.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6653 332211 11222233346777777777777664 23456666777777777777777777777777643 23
Q ss_pred CHhHHHHHHHHHhcCCCHHH-HHHHHHHHHHc
Q 041822 421 HGHALDLLVTGLCSRGRWEE-AFECSKQMLVR 451 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 451 (500)
+..++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55666667777777777655 45667766643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.9e-14 Score=144.27 Aligned_cols=360 Identities=11% Similarity=0.085 Sum_probs=244.6
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPH-FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.|..+ ....+.|...|.+.+|+++++++...+. |.-+....+.++.+..+. +..+..+..+..... + ..
T Consensus 984 ~PeeV-s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-----d---~~ 1053 (1630)
T 1xi4_A 984 DPEEV-SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-----D---AP 1053 (1630)
T ss_pred CHHHh-HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----c---HH
Confidence 33344 3556778899999999999999985432 334455566666666666 456666555554421 1 23
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~---------~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV---------NTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC---------HHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHH
Confidence 356667788999999999888631 1122233322 6778888888887663 5778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQ 303 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 303 (500)
..|++++|...|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 888888888887553 277788888888888888888888888777654 343334457888888888876444
Q ss_pred HHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 041822 304 LFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383 (500)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 383 (500)
+. + .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 42 1 335566777888888888888888888764 47788888888888888888888775
Q ss_pred CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 041822 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRML 463 (500)
Q Consensus 384 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 463 (500)
-+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|.-+
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 3457788788888888888877765543 33455667788888888888888888887766322 1223344445
Q ss_pred HHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 464 QRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
..+|.+- ..+...+..+...+...
T Consensus 1321 aiLyaKy-~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1321 AILYSKF-KPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHhC-CHHHHHHHHHHHHHhcc
Confidence 4444442 34444444444444433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-14 Score=136.30 Aligned_cols=374 Identities=7% Similarity=-0.081 Sum_probs=250.9
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh-------CCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRT-------HPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG 172 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 172 (500)
+.....|+.+..++...|++++|++.|++..+. ........++..+...|...|++++|...+++.......-
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567899999999999999999999887653 1123345678888999999999999999999876543211
Q ss_pred c---cCCChhhHHHHHHHHHc--CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 041822 173 I---RKFGSEEFNVLLQAFCT--QKEMKEARSVFVKLLSRFAPNNKTMNILLLGF---KESGDVTAMEMFYHEMVLRGFR 244 (500)
Q Consensus 173 ~---~~~~~~~~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~g~~ 244 (500)
. ......++..+..++.. .+++++|...|++..+-.|.+...+..+..++ ...++.++|...+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 11234566666655554 45799999999999975566777776666554 34577788888888887763 2
Q ss_pred CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhH
Q 041822 245 PSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320 (500)
Q Consensus 245 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 320 (500)
.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 355666666555544 467889999999988765 4567788899999999999999999999998864 3356667
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 321 NAMISSLIRC-------------------RDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 321 ~~li~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
..+...|... +..+.|...++...+.... +...+..+...|...|++++|.+.|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666665432 2356777888877765443 5567778889999999999999999998876
Q ss_pred CCCCCHH--HHHHHHH-HHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH
Q 041822 382 KFVPKTR--TVVMLMK-FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA 458 (500)
Q Consensus 382 ~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 458 (500)
...+... .+..+.. .....|+.++|...+.+.++.. |+...... ..+.+.+++++..+.+ +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHH
Confidence 4333221 2222222 2346789999999999998853 54332222 2234455566655443 23567
Q ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHhhcc
Q 041822 459 SYRMLQRYLVQANANEKLEDLDRMIKNLQAV 489 (500)
Q Consensus 459 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (500)
+|..+..+|...|+.++|.+.++..-+....
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 8889999999999999999998887776553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-13 Score=138.45 Aligned_cols=390 Identities=11% Similarity=0.096 Sum_probs=282.8
Q ss_pred ccCCCCchhHHHHHHHHHhcCCCCCCCCchhhhhhCCCCC-CCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCC
Q 041822 23 LFSTTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTT-PLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTP 101 (500)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 101 (500)
.++.+..+..++...+.......|...+ ..+.+-+..++ -......-++|++...+. +..+..+..+.....
T Consensus 978 aL~e~~~PeeVs~~vKaf~~aglp~Eai-eLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----- 1050 (1630)
T 1xi4_A 978 ALSETQDPEEVSVTVKAFMTADLPNELI-ELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----- 1050 (1630)
T ss_pred hcccccCHHHhHHHHHHHHhCCCHHHHH-HHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----
Confidence 4455555555665555555333332211 11112121111 113345556677666665 667777766665421
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
....+...+...|.+++|..+|++... .......+ +...+++++|.+..+++. +..+|
T Consensus 1051 ---d~~eIA~Iai~lglyEEAf~IYkKa~~------~~~A~~VL---ie~i~nldrAiE~Aervn----------~p~vW 1108 (1630)
T 1xi4_A 1051 ---DAPDIANIAISNELFEEAFAIFRKFDV------NTSAVQVL---IEHIGNLDRAYEFAERCN----------EPAVW 1108 (1630)
T ss_pred ---cHHHHHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHH---HHHHhhHHHHHHHHHhcC----------CHHHH
Confidence 144588889999999999999998631 22222333 237789999999988652 56789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
..+..++.+.|++++|.+.|.+. .|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 99999999999999999999775 388889999999999999999999998877663 34444556999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMD 341 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 341 (500)
++++..... + .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.++
T Consensus 1182 rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 988644332 2 256777888999999999999999999985 489999999999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC
Q 041822 342 EMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH 421 (500)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 421 (500)
+.. +..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|..+++..+... +-+
T Consensus 1246 KA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH 1313 (1630)
T 1xi4_A 1246 KAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAH 1313 (1630)
T ss_pred HhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhH
Confidence 762 779999999999999999999887654 34456677789999999999999999998887654 345
Q ss_pred HhHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCchhHHHH
Q 041822 422 GHALDLLVTGLCSR--GRWEEAFECSKQMLVRRRQV------SEASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 422 ~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~ 478 (500)
...|+-+..+|++. ++..++.++|..-. ++.+ +...|.-++-.|.+.|+++.|..
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56777777777654 44555555554322 2222 35668888889999999998773
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-15 Score=128.19 Aligned_cols=196 Identities=12% Similarity=0.027 Sum_probs=81.0
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
+...+..+...+...|++++|...|+...+..|. +...+..+...+.+.|++++|+..|++..+. .|.+...+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~ 76 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYLGGY 76 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHH
Confidence 3334444444444444444444444444443332 2223333444444444444444444444433 23334444
Q ss_pred HHHHHHHHcC-----------CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 182 NVLLQAFCTQ-----------KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 182 ~~ll~~~~~~-----------~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
..+..++... |++++|+..|++..+..|.+...+..+..++...|++++|...|++..+.. .+...+
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 4444444444 444444444444444333344444444444445555555555554444443 344444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
..+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444445555555555555555444432 12333444444444444444444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-15 Score=133.54 Aligned_cols=164 Identities=10% Similarity=-0.094 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
..+|..+...+...|++++|.+.|+++.+..+.+..++..+..++.+.|++++|...++++.+. .|+.......+..+
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 3334444444444444444444444444322333344444444444444444444444444433 12222222222223
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC---CHhhHHHHHHHHHhcCCHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP---DIGAYNAMISSLIRCRDLN 334 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 334 (500)
...|++++|...+++..... +++...+ .++..+...++.++|.+.+....+..... +..++..+...|.+.|+++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 33344444444444443322 1121222 23333344444444444444443321100 1233444444444444444
Q ss_pred HHHHHHHHHHH
Q 041822 335 AAMELMDEMEE 345 (500)
Q Consensus 335 ~a~~~~~~~~~ 345 (500)
+|...|++...
T Consensus 233 ~A~~~~~~al~ 243 (275)
T 1xnf_A 233 SATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 44444444444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-14 Score=126.97 Aligned_cols=225 Identities=12% Similarity=0.049 Sum_probs=122.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF--RPS----VVTYN 251 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~ 251 (500)
...|..+...+...|++++|...|+++.+.. .+..++..+..++...|++++|...++...+... .++ ...+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3455555666666666666666666655422 5555555666666666666666665555554311 011 34455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR 331 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 331 (500)
.+...|...|++++|.+.|++..+.. |+. ..+.+.|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------------------------------------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA------------------------------------------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH------------------------------------------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh------------------------------------------HHHHHHh
Confidence 55555555555555555555555432 231 2233445
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 041822 332 DLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWG 411 (500)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 411 (500)
++++|...++.+...... +...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++
T Consensus 120 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 555555555555543211 33445555555566666666666666655432 2235555566666666666666666666
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 412 YLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.+++.. +.+...|..+..+|.+.|++++|...+++..+
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666543 22355566666666666777777666666654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-14 Score=125.13 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=153.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCC----H
Q 041822 140 KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR---FAPN----N 212 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~~----~ 212 (500)
..+..+...+...|++++|...|++..+. . .+..+|..+..++...|++++|.+.+++..+. ..++ .
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-----H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-----h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 34555666677777777777777777665 3 46677777777777777888777777777652 2222 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 292 (500)
.++..+...+...|++++|...+++..+. .|+. ..+.+.|++++|.+.++++.... +.+...+..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence 67777778888888888888888877765 3442 34556677888888888877653 22345566677777
Q ss_pred HccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 041822 293 GLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVC 372 (500)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 372 (500)
...|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+.... +...|..+...+.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777777777776654 235667777777777777777777777777665432 4566666777777777777777
Q ss_pred HHHHHHHh
Q 041822 373 KLYDRMIE 380 (500)
Q Consensus 373 ~~~~~~~~ 380 (500)
+.+++..+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-14 Score=124.75 Aligned_cols=199 Identities=13% Similarity=0.031 Sum_probs=116.8
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
|++...+..+...+.+.|++++|...|++..+..|.+...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34566677777777777777777777777776666677777777777777777777777777776653 22456666666
Q ss_pred HHHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHH
Q 041822 255 DGYCKK-----------GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323 (500)
Q Consensus 255 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 323 (500)
.++... |++++|+..|++..+.. +-+...+..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 66666666666666543 2234555556666666666666666666665554 455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041822 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
..+|...|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666666554332 4455555555666666666666665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-14 Score=136.97 Aligned_cols=382 Identities=9% Similarity=-0.013 Sum_probs=246.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCCh---HHHHHHHHHhHhhCCCCccHHHHHHHHHH
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYF---DQAWELMSHVQRTHPSLLTLKSMSIMLSR 148 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (500)
.+...+.+.|++++|++.|+.+.+. | +...+..+...+...|+. ++|...|+...+. +...+..+...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHH
Confidence 3566677889999999999999875 2 344555666667777887 8999999988864 22334445443
Q ss_pred Hhcc-----ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHH
Q 041822 149 ISKF-----QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGF 222 (500)
Q Consensus 149 ~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~ 222 (500)
+... +++++|...|++..+.+ +...+..|...|...+..+++.+.++.+.. .-..+...+..+...|
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG-------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY 151 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT-------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333 48899999999988754 445888888888877665444444433332 1112566777888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG---CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV---- 295 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---- 295 (500)
...+.++.+......+.+.-...+...+..|...|.+.| +.++|+++|++..+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 888866544443333322211223448888999999999 9999999999999988 35555556666666554
Q ss_pred CCHHHHHHHHHhchhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----C
Q 041822 296 RNIHQARQLFDEMPKRNLKPDIGAYNAMISS-L--IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS-----G 367 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 367 (500)
+++++|.+.|++.. .| +...+..+... | ...++.++|.+.|++..+.| +...+..+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 78999999999988 43 56677777776 4 46899999999999999876 6677777777776 55 9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCCHH
Q 041822 368 LEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV----NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----RGRWE 439 (500)
Q Consensus 368 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 439 (500)
+++|.+.|++.. . -+......+...|.. ..+.++|...|+...+.|. ......|...|.. ..+.+
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHH
Confidence 999999999877 3 345666667666655 3489999999999998773 3345566666654 46899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 440 EAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 440 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
+|..+|+...+.|........ ..+......++.+++..+.+...+.
T Consensus 376 ~A~~~~~~A~~~g~~~a~~~l-~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 376 NAYVFSQLAKAQDTPEANDLA-TQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999988753222211 1122222334555666666655544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-13 Score=121.98 Aligned_cols=236 Identities=11% Similarity=-0.016 Sum_probs=148.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS--VVTYNIRID 255 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~ 255 (500)
...+......+...|++++|...|++..+..+.+...+..+..++...|++++|...+++..+.+..++ ...|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344566667777788888888888887765556666777777888888888888888887777431111 334677777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 335 (500)
.+...|++++|++.|++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888877654 2345667777777777788888888777777663 3345555555523333457777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHHcCCHhh
Q 041822 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG---LEGVCKLYDRMIEGK-FVPK------TRTVVMLMKFFCVNFRVDL 405 (500)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~ll~~~~~~~~~~~ 405 (500)
|.+.|+++.+.... +...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...+...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776665332 34555555566666565 556666666554321 0122 1344445555555555555
Q ss_pred HHHHHHHHHHC
Q 041822 406 GLNLWGYLIDR 416 (500)
Q Consensus 406 a~~~~~~~~~~ 416 (500)
|.+.++++.+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555555553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-12 Score=116.66 Aligned_cols=223 Identities=12% Similarity=0.043 Sum_probs=108.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE----SGDVTAMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
+..++..+...+...|++++|.+.|++..+ +.+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 444455555555555555555555555544 2234444555555555 555555555555555443 3444444
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHH
Q 041822 253 RIDGYCK----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLI 328 (500)
Q Consensus 253 li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 328 (500)
+...|.. .+++++|++.|++..+.+ +.. .+..+...|.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-----------------------------------a~~~lg~~~~ 121 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAE-----------------------------------GCASLGGIYH 121 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-----------------------------------HHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---Ccc-----------------------------------HHHHHHHHHH
Confidence 5455554 555555555555544433 334 4444444444
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 041822 329 R----CRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK----SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV- 399 (500)
Q Consensus 329 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~- 399 (500)
. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...+..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 4 444455555444444432 33334444444444 455555555555544432 23344444444444
Q ss_pred ---cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHHc
Q 041822 400 ---NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----RGRWEEAFECSKQMLVR 451 (500)
Q Consensus 400 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 451 (500)
.+++++|...+++..+.+ +...+..+...|.+ .+++++|.+.|++..+.
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 555555555555555543 13344444555555 55555555555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-12 Score=117.15 Aligned_cols=225 Identities=10% Similarity=0.014 Sum_probs=184.0
Q ss_pred ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCH
Q 041822 137 LTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT----QKEMKEARSVFVKLLSRFAPNN 212 (500)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~ 212 (500)
.+..++..+...+...|++++|...|++..+ +.+..++..+...|.. .+++++|...|++..+. .+.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~ 74 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYS 74 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCH
Confidence 3556778888899999999999999998864 3467889999999999 99999999999999873 288
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHH
Q 041822 213 KTMNILLLGFKE----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVACLPSLQT 284 (500)
Q Consensus 213 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~ 284 (500)
..+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 999999999999 999999999999999886 78889999999999 999999999999998876 5666
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041822 285 ITTLIHGAGL----VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIR----CRDLNAAMELMDEMEEKRIGHDNVTYH 356 (500)
Q Consensus 285 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 356 (500)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 7777777776 788888888888887764 45667777777777 788888888888777764 355566
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHhCC
Q 041822 357 TMFFGLMK----SSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 357 ~li~~~~~----~g~~~~a~~~~~~~~~~~ 382 (500)
.+...|.+ .+++++|.+.|++..+.+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66677776 777777777777776653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-13 Score=122.29 Aligned_cols=232 Identities=9% Similarity=0.036 Sum_probs=164.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCC-ccHHHHHHHHHHHh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSL-LTLKSMSIMLSRIS 150 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 150 (500)
..+..+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|.+.++.+.+..++. .....+..+...+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34566777888888888888888753 4455677888888888888888888888888732221 12345677777888
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
..|++++|+..|++..+. .+.+..+|..+...|...|++++|...|++..+..+.+...+..+...+...+++++
T Consensus 86 ~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDR-----DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HcccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 456777888888888888888888888888887666677777777734444558888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCHHH
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC---FGDAMRLFEEMERVA-CLPS------LQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~ 300 (500)
|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 888888887763 2246666677777777777 777777777766431 0122 1345556666666666666
Q ss_pred HHHHHHhchhC
Q 041822 301 ARQLFDEMPKR 311 (500)
Q Consensus 301 a~~~~~~~~~~ 311 (500)
|.+.|++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 66666666654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=122.15 Aligned_cols=203 Identities=12% Similarity=0.003 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++++.+..|. +...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHH
Confidence 4556667777777888888888888877642 456677777777888888888888888887776554 345666677
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..|...|++++|.+.|+++... +..+.+...+..+...+...|++++|.+.|+++.+..+.+...+..+...+...|
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQD---TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHHHHHhC---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 7777777777777777776551 1134455667777777777777777777777777644556677777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777777766543 2355566666677777777777777777776653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-14 Score=123.36 Aligned_cols=203 Identities=9% Similarity=0.049 Sum_probs=150.0
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+..|. +...+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 96 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSS--AATAYYG 96 (243)
T ss_dssp ---------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHHHH
Confidence 345556667777888899999999999998753 567888888899999999999999999999887654 4567777
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+..+.+...+..+...+.+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 888888899999999999988776 466778888888888999999999999988887556678888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 225 SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 225 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
.|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+..
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888888887763 3357778888888888888888888888887754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-13 Score=119.79 Aligned_cols=196 Identities=11% Similarity=0.026 Sum_probs=77.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
..+...+...|++++|.+.|+++.+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence 3333333334444444444443333222333334444444444444444444444333331 112333333444444444
Q ss_pred ChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041822 262 CFGDAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM 340 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (500)
++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...+
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444443311112 22333333344444444444444444443332 112334444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
+++.+... .+...+..+...+...|++++|.+.++++.+
T Consensus 199 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 199 DLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44443322 1333344444444444444444444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-14 Score=127.20 Aligned_cols=249 Identities=10% Similarity=-0.019 Sum_probs=194.6
Q ss_pred hhcCChHHHHHHHHHhhcCCCCC--CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFT--PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
...+++++|++.|+.+.+..... .+...+..+...+...|++++|...|+++.+..|. +...+..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCH
Confidence 34688999999999999862211 24567889999999999999999999999998765 456788899999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFY 235 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 235 (500)
++|...|++.... .+.+..++..+...+.+.|++++|...|+++.+..+ +.......+..+...|++++|...+
T Consensus 94 ~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 94 DAAYEAFDSVLEL-----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999887 466789999999999999999999999999987433 3334445555667789999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC
Q 041822 236 HEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL---PSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 236 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 312 (500)
....... +++...+ .++..+...++.++|++.+++..+.... .+...+..+...|...|++++|...|+++.+..
T Consensus 168 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8877763 3344444 4777788889999999999988764311 115778889999999999999999999998864
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041822 313 LKPDIGAYNAMISSLIRCRDLNAAMELM 340 (500)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (500)
|+. +.....++...|++++|.+.+
T Consensus 246 --p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CTT--CHHHHHHHHHHHHHHHC----
T ss_pred --chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 322 333355677778888887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-13 Score=127.65 Aligned_cols=216 Identities=9% Similarity=0.052 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC-hHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY-FDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
.++..+..++...|++++|++.|+.+++.. |-+...|..+..++...|+ +++|+..|+++.+..|. +..+|..+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHHHHHHHH
Confidence 344555555555666666666666666542 3445555666666666664 66666666666665444 334555555
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh-c
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE-S 225 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~-~ 225 (500)
.++...|++++|+..|+++... .+.+..+|..+..++.+.|++++|+..|+++++..+.+...|+.+..++.+ .
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l-----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ-----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh-----CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 5555666666666666665554 345555666666666666666666666666655444455556666555555 3
Q ss_pred CCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 041822 226 GDVTAM-----EMFYHEMVLRGFRPSVVTYNIRIDGYCKKG--CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV 295 (500)
Q Consensus 226 ~~~~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 295 (500)
|..++| ...+++.++.. +-+...|+.+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 333444 24444444432 113445555555555544 355555555554 21 123344444555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-13 Score=126.22 Aligned_cols=233 Identities=11% Similarity=0.041 Sum_probs=179.1
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS-YEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
...|..+..++...|++++|++.++++.+..|. ...+|..+..++...|+ +++|+..|++.... .+.+..+|
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----~P~~~~a~ 169 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QPKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----CCCCHHHH
Confidence 456777888888889999999999999988766 45577778888888886 99999999988877 46788889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-c
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK-K 260 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~ 260 (500)
+.+..++...|++++|+..|+++++..+-+...|..+..++.+.|++++|...++++++... -+...|+.+..++.+ .
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998876677888888888888889999999999988887742 367788888888888 5
Q ss_pred CChhHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC--
Q 041822 261 GCFGDA-----MRLFEEMERVACLPSLQTITTLIHGAGLVR--NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR-- 331 (500)
Q Consensus 261 g~~~~a-----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 331 (500)
|..++| ++.|++..... +-+...|..+...+...| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcc
Confidence 665777 47777777654 335667777777777766 577777777776 332 335666777777777653
Q ss_pred -------CHHHHHHHHHHH-HHC
Q 041822 332 -------DLNAAMELMDEM-EEK 346 (500)
Q Consensus 332 -------~~~~a~~~~~~~-~~~ 346 (500)
..++|.++|+++ .+.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHHHHh
Confidence 247777777776 443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-13 Score=114.92 Aligned_cols=199 Identities=7% Similarity=-0.053 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..|..+...+...|++++|.+.|+++.+..+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3344444444444444444444444443333334444444444444444444444444444332 113344444444444
Q ss_pred hc-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 041822 259 KK-GCFGDAMRLFEEMERVACLPS-LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 259 ~~-g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 336 (500)
.. |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 44 455555555444444211121 3344444444455555555555555444432 12344455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
...++++.+.....+...+..+...+...|+.+++..+++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555443321234444444455555555555555555554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-13 Score=116.48 Aligned_cols=198 Identities=12% Similarity=0.043 Sum_probs=91.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+...|++++|.+.++.+.+..|. +...+..+...+...|++++|...+++.... .+.+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l 82 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCChHHHHHH
Confidence 3444444444444444444444444444332 2233444444444444444444444444433 23344444445
Q ss_pred HHHHHcC-CCHHHHHHHHHHhhh--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 185 LQAFCTQ-KEMKEARSVFVKLLS--RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 185 l~~~~~~-~~~~~A~~~~~~m~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
...+... |++++|...++++.+ ..+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 5555555 555555555555444 222223444555555555555555555555544432 113444445555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
++++|.+.+++..+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555554432102334444444444555555555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=121.19 Aligned_cols=202 Identities=10% Similarity=0.037 Sum_probs=129.1
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhh
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEE 180 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 180 (500)
.....+..+...+...|++++|...|+++.+..|. +...+..+...+...|++++|...|+++... .+.+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ 93 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALEL-----DSSAATA 93 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCcchHH
Confidence 34556667777777888888888888888776554 3456667777778888888888888877765 3556777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 260 (500)
+..+...+...|++++|.+.++++.+..+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence 77777888888888888888887776555667777777777777777777777777776653 23566677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
|++++|.+.|+++.+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777777777776653 234556666666666677777777776666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-13 Score=127.20 Aligned_cols=276 Identities=11% Similarity=0.015 Sum_probs=135.4
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChh
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT--LKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSE 179 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 179 (500)
...+......+...|++++|...|+++.+..|.... ...+..+...|...|++++|...+++....... +..+....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334445555555556666666666555555433221 233444555555566666666665554332110 00111234
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHhHHHHHHHHHhcCC--------------------HHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSR--FAPN----NKTMNILLLGFKESGD--------------------VTAMEM 233 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 233 (500)
++..+...+...|++++|...+++..+- ..++ ..++..+...+...|+ ++.|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 5566666666677777777666666531 0011 3356666666666666 666666
Q ss_pred HHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHH
Q 041822 234 FYHEMVLR----GFR-PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVAC-LPS----LQTITTLIHGAGLVRNIHQARQ 303 (500)
Q Consensus 234 ~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~ 303 (500)
.+++..+. +.. ....++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554432 111 1123455666666677777777777666553210 011 1244555555555666666655
Q ss_pred HHHhchhCC----CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChhHHHH
Q 041822 304 LFDEMPKRN----LKP-DIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG-HD----NVTYHTMFFGLMKSSGLEGVCK 373 (500)
Q Consensus 304 ~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~ 373 (500)
.+++..+.. ..+ ...++..+...|...|++++|...+++..+.... .+ ...+..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555544321 000 0234445555555555555555555544332000 01 2234444444555555555555
Q ss_pred HHHHH
Q 041822 374 LYDRM 378 (500)
Q Consensus 374 ~~~~~ 378 (500)
.+++.
T Consensus 329 ~~~~a 333 (406)
T 3sf4_A 329 FAEKH 333 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-13 Score=128.91 Aligned_cols=272 Identities=11% Similarity=0.021 Sum_probs=130.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCcc--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChhhHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLT--LKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSEEFNVL 184 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l 184 (500)
.+...+...|++++|...++++.+..|.... ...+..+...|...|++++|...|++....... +..+....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344444455555555555555544333211 123444444555555555555555554332100 0012233455666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhC------CCCCHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSR------FAPNNKTMNILLLGFKESGD-----------------VTAMEMFYHEMVLR 241 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~ 241 (500)
...|...|++++|...|++..+. .+....++..+...+...|+ ++.|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66666667777776666665531 11223455666666666666 66666665554432
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 242 ----GF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL-PS----LQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 242 ----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+- .....++..+...|...|++++|++.+++..+.... .+ ..++..+...|...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11 111235556666666777777777777665542100 01 124455555555666666666555554432
Q ss_pred CCC-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 312 NLK-----PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI-----GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 312 ~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
... ....++..+...|...|++++|...+++...... ......+..+...|...|++++|.+.+++..
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 100 0123445555555555555555555554433200 0011233444444555555555555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=130.08 Aligned_cols=304 Identities=12% Similarity=0.027 Sum_probs=224.4
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHhHhhC---C-C
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT----PDAFEKTLHILARMRYFDQAWELMSHVQRTH---P-S 135 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~-~ 135 (500)
......+......+...|++++|+..|+.+.+.. +.+ ...+..+...+...|++++|...+++..... . .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 3455666677888899999999999999999863 334 3567888899999999999999999876531 1 1
Q ss_pred CccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhhHHHHHHHHHcCCC--------------------H
Q 041822 136 LLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEEFNVLLQAFCTQKE--------------------M 194 (500)
Q Consensus 136 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~--------------------~ 194 (500)
......+..+...|...|++++|...+++........ .......++..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1234567778888999999999999999886653210 011124478899999999999 9
Q ss_pred HHHHHHHHHhhh---CC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCh
Q 041822 195 KEARSVFVKLLS---RF---APNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF-RPS----VVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 195 ~~A~~~~~~m~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~ 263 (500)
++|...+++..+ .. +....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 999999988764 11 12245788899999999999999999998875410 112 33788889999999999
Q ss_pred hHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC-----CCHhhHHHHHHHHHhcCCH
Q 041822 264 GDAMRLFEEMERVA----CLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK-----PDIGAYNAMISSLIRCRDL 333 (500)
Q Consensus 264 ~~a~~~~~~m~~~~----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~ 333 (500)
++|...+++..+.. ..+ ...++..+...|...|++++|...+++..+.... ....++..+...|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 99999999876431 111 1457788889999999999999999987653211 1155788899999999999
Q ss_pred HHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChh
Q 041822 334 NAAMELMDEMEEK----RIGH-DNVTYHTMFFGLMKSSGLE 369 (500)
Q Consensus 334 ~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~ 369 (500)
++|...+++..+. +..+ ...++..+...+...|+..
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9999999886543 1111 2344555666666666553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-13 Score=128.59 Aligned_cols=134 Identities=14% Similarity=0.055 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhCC----CC-CCH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIG-HD----NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK----FV-PKT 387 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-p~~ 387 (500)
.++..+...|...|++++|...+++..+.... .+ ...+..+...|...|++++|.+.+++..+.. .. ...
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45666777777777777777777766543110 01 2256677777888888888888887765421 01 114
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHHHC----CCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 388 RTVVMLMKFFCVNFRVDLGLNLWGYLIDR----GFC-PHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 388 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
.++..+...+...|++++|...+++.++. +.. ....++..+...|.+.|++++|.+.+++..+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56677777888888888888888887753 111 12346777888889999999999999888754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-13 Score=124.28 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=101.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCcc--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChhhHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLT--LKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSEEFNVL 184 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l 184 (500)
.....+...|++++|...++++.+..|.... ...+..+...+...|++++|...+++....... +..+....++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3444455556666666666665555433221 233444555555666666666666554332100 0011123456666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHhHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSR--FAPN----NKTMNILLLGFKESGD--------------------VTAMEMFYHEM 238 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~ 238 (500)
...+...|++++|...+++..+- -.++ ..++..+...+...|+ ++.|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 66777777777777777666531 1111 2356666666666666 66666666554
Q ss_pred HHC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 041822 239 VLR----GF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA----C-LPSLQTITTLIHGAGLVRNIHQARQLFDEM 308 (500)
Q Consensus 239 ~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 308 (500)
.+. +. ......+..+...+...|++++|.+.+++..+.. . .....++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 332 10 1112345556666666677777766666654321 0 001123444444455555555555555444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.8e-11 Score=116.85 Aligned_cols=416 Identities=7% Similarity=0.006 Sum_probs=284.6
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC---hHHHHHHHHHhHhhCCCCccHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY---FDQAWELMSHVQRTHPSLLTLKS 141 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~ 141 (500)
.+...|..+++.+...+....+..+|+.++.. +|.+...|...+..-.+.|. ++.+.++|++.....|..++...
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 35566777888888889999999999999985 68888899999999999998 99999999999987643456667
Q ss_pred HHHHHHHHhcccc--------HHHHHHHHHHHHHHHhccc-cCCChhhHHHHHHHHHc---------CCCHHHHHHHHHH
Q 041822 142 MSIMLSRISKFQS--------YEETLEAFDRMEREIFVGI-RKFGSEEFNVLLQAFCT---------QKEMKEARSVFVK 203 (500)
Q Consensus 142 ~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~---------~~~~~~A~~~~~~ 203 (500)
|...+....+.++ .+...++|+..... .|. .+.+...|...+..... .++++.+..+|+.
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~--vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK--CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--TTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--hCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 7776654444433 23445777776543 232 23455688888876543 3456788899999
Q ss_pred hhhCCCCC--HHhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC--CCC---------------C-----C
Q 041822 204 LLSRFAPN--NKTMNILLLGFKE-------------SGDVTAMEMFYHEMVLR--GFR---------------P-----S 246 (500)
Q Consensus 204 m~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--g~~---------------~-----~ 246 (500)
++. +|.. ..+|......-.. ..+++.|...+.++.+. ++. | +
T Consensus 220 aL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 220 LLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 885 3222 2233221111111 11234455555543321 211 1 0
Q ss_pred ---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHhchhCCCCC
Q 041822 247 ---VVTYNIRIDGYCKKG-------CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR-QLFDEMPKRNLKP 315 (500)
Q Consensus 247 ---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~ 315 (500)
...|...+..--..+ ..+.+..+|++.... ++-....|-..+..+...|+.++|. ++|+..... ++.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 234555555433322 123456778888765 3456778888888888889999996 999999875 345
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHHcCChhHHHHH
Q 041822 316 DIGAYNAMISSLIRCRDLNAAMELMDEMEEKR---------IGHD------------NVTYHTMFFGLMKSSGLEGVCKL 374 (500)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~ 374 (500)
+...+...+...-+.|++++|.++|+.+.+.. ..|+ ...|...+....+.|+.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66677888888999999999999999887631 0132 23577778888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc-CCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 041822 375 YDRMIEGKFVPKTRTVVMLMKFFCVN-FRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR 453 (500)
Q Consensus 375 ~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (500)
|.+.++.........|......-.+. ++.+.|..+|+..++. ++.+...|...++.....|+.+.|..+|++......
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99998751122233443332222333 4589999999999986 344666777888888889999999999999986543
Q ss_pred CC--CHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 454 QV--SEASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 454 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
.+ ....|...+..=...|+.+.+..+.+.+.....
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 22 245677778888899999999999999988865
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-12 Score=124.70 Aligned_cols=346 Identities=9% Similarity=-0.008 Sum_probs=229.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY---EETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+...+.+.|++++|.++|+...+.+ + . ..+..+...|...|+. ++|...|++..+. +...+..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g-~-~--~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------~~~A~~~L 75 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG-Y-S--EAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-C-C--TGGGTCC------------------------------------CHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-C-H--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------CHHHHHHH
Confidence 35677788899999999999998764 1 1 2334455556667888 8999999887632 56677888
Q ss_pred HHHHHcCC-----CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 185 LQAFCTQK-----EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT---AMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 185 l~~~~~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
...+...+ +.++|+..|++..+.. +...+..|...|...+..+ .+.+.+......| +...+..+...
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~ 150 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLL 150 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88666665 7889999999998732 3337778888887766543 4555555555555 45567778888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc---
Q 041822 257 YCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVR---NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRC--- 330 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 330 (500)
|...+.++++......+.+.-...+...+..+...|...| +.++|++.|++..+.| .++...+..+...|...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence 8888866666555443333222223347788888888899 8999999999999987 44666667777777655
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----
Q 041822 331 -RDLNAAMELMDEMEEKRIGHDNVTYHTMFFG-L--MKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF----- 401 (500)
Q Consensus 331 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----- 401 (500)
++.++|.+.|+... .| +...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 79999999999988 43 55666666666 3 46899999999999999876 5666667777776 55
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCch
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----RGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ----ANAN 473 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~ 473 (500)
++++|.+.|++.. .| +...+..+...|.. ..+.++|..+|++..+.|. ......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999887 43 55677777777766 4499999999999988764 2333455555554 3466
Q ss_pred hHHHHHHHHHHHh
Q 041822 474 EKLEDLDRMIKNL 486 (500)
Q Consensus 474 ~~~~~~~~~~~~~ 486 (500)
+.|..+++.....
T Consensus 375 ~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 375 LNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC
Confidence 7777777665443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-13 Score=122.03 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=189.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHhHhh----CCCCccHH
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT----PDAFEKTLHILARMRYFDQAWELMSHVQRT----HPSLLTLK 140 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~ 140 (500)
.+......+...|++++|+..|+.+.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34456777889999999999999999863 334 356788899999999999999999987653 11122345
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhhHHHHHHHHHcCCC--------------------HHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEEFNVLLQAFCTQKE--------------------MKEARS 199 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~--------------------~~~A~~ 199 (500)
.+..+...|...|++++|...+++........ .......++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 67778888999999999999999886653211 001113478889999999999 999999
Q ss_pred HHHHhhh-----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhHHHH
Q 041822 200 VFVKLLS-----R-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GF-RPSVVTYNIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 200 ~~~~m~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~ 268 (500)
.+++..+ + .+....++..+...+...|++++|...+++..+. +. .....++..+...+...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988764 1 1122457888899999999999999999988754 11 1113377888899999999999999
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHhchhCCC-----CCCHhhHHHHHHHHHhcCCHHHHHH
Q 041822 269 LFEEMERVAC-LPS----LQTITTLIHGAGLVRNIHQARQLFDEMPKRNL-----KPDIGAYNAMISSLIRCRDLNAAME 338 (500)
Q Consensus 269 ~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~ 338 (500)
.+++..+... ..+ ..++..+...+...|++++|...+++..+... .....++..+...|.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9998764210 011 33455566666666666666666665543210 0012244445555555555555555
Q ss_pred HHHHHHH
Q 041822 339 LMDEMEE 345 (500)
Q Consensus 339 ~~~~~~~ 345 (500)
.+++..+
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-12 Score=104.44 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=74.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
..|..+...+...|++++|++.|++..+..|+ +..++..+...|.+.|++++|...++..... .+.+...+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~ 78 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--NVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CchhHHHHHH
Confidence 34444444444444444444444444444333 2233444444444444444444444444333 2333444444
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 263 (500)
+...+...++++.|...+.+..+..+.+...+..+..++.+.|++++|...|++..+.. +.+..+|..+..+|.+.|++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 44444444444444444444444333344444444444444555555555444444432 12344444444455555555
Q ss_pred hHHHHHHHHHHH
Q 041822 264 GDAMRLFEEMER 275 (500)
Q Consensus 264 ~~a~~~~~~m~~ 275 (500)
++|++.|++..+
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555554444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-12 Score=105.40 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
++.+|..+...+...|++++|++.|+++++.. |-+..++..+..++.+.|++++|...++......|. ....+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHHHHHHH
Confidence 45677788999999999999999999999864 567889999999999999999999999999998665 44567777
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+...++++.|...+++.... .+.+..++..+...+.+.|++++|++.|++..+..+.+..+|..+..++.+.
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 78889999999999999998877 5778899999999999999999999999999986677899999999999999
Q ss_pred CCHHHHHHHHHHHHHC
Q 041822 226 GDVTAMEMFYHEMVLR 241 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~ 241 (500)
|++++|...|++..+.
T Consensus 155 g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999886
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-12 Score=118.82 Aligned_cols=160 Identities=11% Similarity=-0.023 Sum_probs=86.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhC---CCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSR---FAP---NNKTMNILLLGFKESGDVTAMEMFYHEMVLRG--F----RPSVVTYN 251 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~---~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~ 251 (500)
....+...|++++|...|++..+- .+. ...++..+...+...|+++.|...+.+..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556667778888888888887641 211 23567777777777777777777777665431 0 01134556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhC----CC-CCCHhhHH
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMERVA----CLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKR----NL-KPDIGAYN 321 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 321 (500)
.+...|...|++++|++.|++..+.. ..+ ...++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 66666777777777777766655321 000 0123444455555555555555555544431 11 11233344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 041822 322 AMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~~ 343 (500)
.+...|.+.|++++|...+++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444445554444444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-11 Score=108.25 Aligned_cols=217 Identities=10% Similarity=0.046 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhhCCCCCHHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041822 195 KEARSVFVKLLSRFAPNNKTMNILLLGFKE-------SGDV-------TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260 (500)
Q Consensus 195 ~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 260 (500)
++|..+|++..+..+.+...|..++..+.. .|++ ++|..+|++.++.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 445555555554344455555555544432 2443 45555555554410111333455555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHH-hcCCHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPS-LQ-TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLI-RCRDLNAAM 337 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~ 337 (500)
|++++|.++|++..+.. |+ .. .|..+...+.+.|++++|..+|++..+.+ +.+...|........ ..|+.++|.
T Consensus 113 ~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555554422 22 11 44444444444555555555555544432 112222222221111 134555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHhhHHHHHHHHH
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK-FVP--KTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 414 (500)
.+|+...+.... +...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544433221 34444444444444555555555555544431 222 13344444444444455555555554444
Q ss_pred H
Q 041822 415 D 415 (500)
Q Consensus 415 ~ 415 (500)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-11 Score=107.37 Aligned_cols=217 Identities=11% Similarity=0.022 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHH-------cCCCH-------HHHHHHHHHhhhC-CCCCHHhHHHHHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFC-------TQKEM-------KEARSVFVKLLSR-FAPNNKTMNILLL 220 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~A~~~~~~m~~~-~~~~~~~~~~l~~ 220 (500)
++|..+|++.... .|.+...|..++..+. +.|++ ++|..+|++..+. .+.+...|..++.
T Consensus 33 ~~a~~~~~~al~~-----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 6788899988877 4778889988888876 45886 8999999999985 4556678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGFRPS-VV-TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA-GLVRN 297 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~ 297 (500)
.+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|.++|++..+.+ +.+...|....... ...|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999986 443 33 89999999999999999999999998865 23444444333332 23699
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCChhHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR-IGH--DNVTYHTMFFGLMKSSGLEGVCKL 374 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~ 374 (500)
+++|.++|+...+.. +-+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.++|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998764 3367889999999999999999999999999863 344 467888889999999999999999
Q ss_pred HHHHHhC
Q 041822 375 YDRMIEG 381 (500)
Q Consensus 375 ~~~~~~~ 381 (500)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-11 Score=115.52 Aligned_cols=233 Identities=8% Similarity=0.006 Sum_probs=144.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCC------CCCHhhHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERV----ACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL------KPDIGAYN 321 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 321 (500)
....+...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+.+..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555667777777777766542 1111 234566666667777777777776666544210 11134567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHH
Q 041822 322 AMISSLIRCRDLNAAMELMDEMEEKRIG-HD----NVTYHTMFFGLMKSSGLEGVCKLYDRMIEG----KFVP-KTRTVV 391 (500)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~ 391 (500)
.+...|...|++++|.+.|++..+.... ++ ..++..+...|...|++++|.+.+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777777778888887777766542100 11 135666777778888888888888776651 2213 356677
Q ss_pred HHHHHHHHcCCHhhHHHHHHHHHHC----CCCCCHhHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 041822 392 MLMKFFCVNFRVDLGLNLWGYLIDR----GFCPHGHALDLLVTGLCSRGR---WEEAFECSKQMLVRRRQVS-EASYRML 463 (500)
Q Consensus 392 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~l 463 (500)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 7777788888888888888777652 111122335667777778887 66666666655 33333 3345677
Q ss_pred HHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 464 QRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
...|...|++++|..+++.......
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7888888888888888777665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=125.69 Aligned_cols=214 Identities=12% Similarity=-0.010 Sum_probs=150.9
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH-HHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM-KEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
.+++++..+++.... .+.+...+..+...+...|++ ++|++.|++..+..+.+...|..+..+|.+.|++++|.
T Consensus 83 ~~~~al~~l~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 355566666654433 355677778888888888888 88888888887655566778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGYCKK---------GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV-------- 295 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------- 295 (500)
..|++..+. .|+...+..+...|... |++++|++.|++..+.. +-+...|..+..+|...
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 888887766 46667777777777777 78888888888777654 33466677777777776
Q ss_pred CCHHHHHHHHHhchhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 041822 296 RNIHQARQLFDEMPKRNLK--PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCK 373 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (500)
|++++|...|++..+.... -+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++++|++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777765310 36667777777777777777777777777665433 45566666677777777776666
Q ss_pred HHH
Q 041822 374 LYD 376 (500)
Q Consensus 374 ~~~ 376 (500)
.+.
T Consensus 314 ~~~ 316 (474)
T 4abn_A 314 SKG 316 (474)
T ss_dssp HTT
T ss_pred Hhc
Confidence 543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.3e-12 Score=121.95 Aligned_cols=214 Identities=11% Similarity=0.059 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHH
Q 041822 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY-EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEA 197 (500)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 197 (500)
++++.+.++......+ .....+..+...+...|++ ++|++.|++..+. .+.+..+|..+..+|.+.|++++|
T Consensus 84 ~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4455555555444332 2344555555556666666 6666666665554 344555666666666666666666
Q ss_pred HHHHHHhhhCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 041822 198 RSVFVKLLSRFAPNNKTMNILLLGFKES---------GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK-------- 260 (500)
Q Consensus 198 ~~~~~~m~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------- 260 (500)
.+.|++..+. .|+...+..+...+... |++++|...+++..+.. +-+...|..+..+|...
T Consensus 157 ~~~~~~al~~-~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 157 HTCFSGALTH-CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHHTT-CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHhh-CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 6666666542 24455566666666665 66666666666655542 22455555566666555
Q ss_pred CChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACL---PSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
|++++|++.|++..+.. + -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.
T Consensus 235 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665543 1 245556666666666666666666666665543 224445556666666666666666
Q ss_pred HHHHHH
Q 041822 338 ELMDEM 343 (500)
Q Consensus 338 ~~~~~~ 343 (500)
+.+..+
T Consensus 313 ~~~~~~ 318 (474)
T 4abn_A 313 ESKGKT 318 (474)
T ss_dssp HHTTTC
T ss_pred HHhccc
Confidence 554433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=119.78 Aligned_cols=176 Identities=14% Similarity=0.066 Sum_probs=120.5
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCC------CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh------
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHP------HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT------ 132 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 132 (500)
.....+..+...+...|++++|+..|+.+.+.. ..+.....+..+...+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 445667778888899999999999999888720 11334566788888899999999999999888764
Q ss_pred CCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc---cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--
Q 041822 133 HPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV---GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-- 207 (500)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-- 207 (500)
.........+..+...|...|++++|...|++....... +..+....++..+...+...|++++|.+.|+++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 222234456677777888888888888888877654210 001234456777777777788888887777777641
Q ss_pred ------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 208 ------FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 208 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
.+....++..+..++...|++++|...++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112234566666667777777777777666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-09 Score=107.93 Aligned_cols=395 Identities=8% Similarity=-0.018 Sum_probs=266.7
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc---HHHH
Q 041822 82 NGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS---YEET 158 (500)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a 158 (500)
.+.+.+..|+..+..+ |-|...|..++..+.+.+.++.+..+|+.+....|. +...|...+..-.+.|. ++.+
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHHH
Confidence 3445566666666653 679999999999999999999999999999998765 55678888888788888 9999
Q ss_pred HHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH--------HHHHHHHHHhhh--CC-CC-CHHhHHHHHHHHH---
Q 041822 159 LEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM--------KEARSVFVKLLS--RF-AP-NNKTMNILLLGFK--- 223 (500)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~A~~~~~~m~~--~~-~~-~~~~~~~l~~~~~--- 223 (500)
..+|++...... .++++..|..-+....+.++. +...++|+..+. |. .+ +...|...+....
T Consensus 123 ~~lfeRal~~~~---~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 123 EPVLARCLSKEL---GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHTCSSS---CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcC---CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 999999876520 137888998888766654443 345578888775 54 34 4567877776543
Q ss_pred ------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHH--cCC----
Q 041822 224 ------ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK-------------KGCFGDAMRLFEEMER--VAC---- 278 (500)
Q Consensus 224 ------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~--~~~---- 278 (500)
..++++.+..+|+..+......-..+|......--. ..+++.|...+.++.. .++
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 234577899999998864222223344322221111 1223445555554432 111
Q ss_pred C-----------C-----C---HHHHHHHHHHHHccC-------CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCC
Q 041822 279 L-----------P-----S---LQTITTLIHGAGLVR-------NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRD 332 (500)
Q Consensus 279 ~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 332 (500)
+ | + ...|...+.---..+ ..+.+..+|++..... +-+...|...+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 1 1 0 133444444322222 1234566788877753 4477888888888888999
Q ss_pred HHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC---------CCCC------------HHHH
Q 041822 333 LNAAM-ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK---------FVPK------------TRTV 390 (500)
Q Consensus 333 ~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~p~------------~~~~ 390 (500)
.++|. ++|++..... ..+...|-..+....+.|++++|.++|+++.+.. -.|+ ...|
T Consensus 359 ~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 99996 9999988753 2366667778888889999999999999987531 0132 2357
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSR-GRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ 469 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 469 (500)
...+....+.|+.+.|..+|..+++.........|...+..-.+. ++.+.|.++|+...+. +.-+...+...+.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 777777778899999999999999861122334454333333344 4589999999999876 33355566788888888
Q ss_pred cCchhHHHHHHHHHHHh
Q 041822 470 ANANEKLEDLDRMIKNL 486 (500)
Q Consensus 470 ~~~~~~~~~~~~~~~~~ 486 (500)
.|+.+.|+.+++.....
T Consensus 517 ~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDK 533 (679)
T ss_dssp HTCHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999876554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=118.04 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS--------RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR------GF- 243 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~- 243 (500)
.++..+...+...|++++|..+|+++.+ ..+....++..+...+...|++++|...+++..+. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444455555555555555555555443 12222344455555555555555555555554432 11
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC-----
Q 041822 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV------AC-LPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR----- 311 (500)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 311 (500)
.....++..+...|...|++++|.+.+++..+. +. +.....+..+...+...|++++|.++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112344555555666666666666666555442 11 112334445555555555555555555555442
Q ss_pred -CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 312 -NLKP-DIGAYNAMISSLIRCRDLNAAMELMDEMEE 345 (500)
Q Consensus 312 -~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 345 (500)
+..| ...++..+...|...|++++|.+.++++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 233455556666666666666666665543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-10 Score=105.59 Aligned_cols=268 Identities=10% Similarity=0.025 Sum_probs=149.9
Q ss_pred HHHcCCChHHHHHHHHHhHhhCCCCcc---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcccc-CCChhhHHHHHHH
Q 041822 112 ILARMRYFDQAWELMSHVQRTHPSLLT---LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIR-KFGSEEFNVLLQA 187 (500)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~ 187 (500)
.+...|++++|...+++.....|.... ...+..+...+...|++++|...+++.......... .....+++.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344555666666665555543322211 112334445566667777777777665543211000 0011235667777
Q ss_pred HHcCCCHHHHHHHHHHhhh-----CCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 041822 188 FCTQKEMKEARSVFVKLLS-----RFA--P-NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR----PSVVTYNIRID 255 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~-----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~ 255 (500)
+...|++++|...+++..+ +.+ | ...++..+...+...|++++|...+++..+.... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 8888888888888887764 111 2 2345666777788888888888888877654211 12345667777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHccCCHHHHHHHHHhchhCCCCCC---HhhHHHHHHH
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACLPS--LQTIT----TLIHGAGLVRNIHQARQLFDEMPKRNLKPD---IGAYNAMISS 326 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 326 (500)
.+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++..+....+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 78888888888888887764311111 11111 222346677888888888877765432111 2234555666
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 327 LIRCRDLNAAMELMDEMEEK----RIGHDN-VTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 327 ~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66777777777776655432 111111 133344455555666666666655544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-10 Score=108.59 Aligned_cols=246 Identities=11% Similarity=0.055 Sum_probs=119.2
Q ss_pred CChHHHHHHHHHHH--hhcCChHHHHHHHHHhhcC-CCCCCCHHh--HHHHHHHH--HcCCChHHHH---------HHHH
Q 041822 64 LSSTLVENVLGRLF--AAHSNGLKALEFFKFTLQH-PHFTPTPDA--FEKTLHIL--ARMRYFDQAW---------ELMS 127 (500)
Q Consensus 64 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~-~~~~~~~~~--~~~l~~~~--~~~g~~~~a~---------~~~~ 127 (500)
.++..+-+.|...+ ..+++.++|.++++.+.+. .....+... |-.++..- .-.+.+..+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 46777888888777 7889999999999876552 122234333 23333221 0011111111 4444
Q ss_pred HhHhhCC---CCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 041822 128 HVQRTHP---SLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203 (500)
Q Consensus 128 ~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 203 (500)
.+..... .......+......+...|++++|+..|++....... +..+....++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4332110 0001111222233345566666666666665433110 00011234556666666666666666666666
Q ss_pred hhh---CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 204 LLS---RFAP----NNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GFR-PSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 204 m~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
..+ .... ...+++.+..+|...|+++.|...+++..+. |-. ....++..+..+|...|++++|++.|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 553 1110 1334555566666666666666666555432 100 012344555555555666666666555
Q ss_pred HHHH-----cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 272 EMER-----VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 272 ~m~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
+..+ .. +....++..+...+.+.|++++|...+++..+
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5544 21 11233444455555555555555555554443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-10 Score=108.91 Aligned_cols=316 Identities=10% Similarity=-0.021 Sum_probs=147.5
Q ss_pred CCCHHhHHHHHHHH--HcCCChHHHHHHHHHhHhhCCCC-ccHHH--HHHHHHH--HhccccHHHHH---------HHHH
Q 041822 100 TPTPDAFEKTLHIL--ARMRYFDQAWELMSHVQRTHPSL-LTLKS--MSIMLSR--ISKFQSYEETL---------EAFD 163 (500)
Q Consensus 100 ~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~-~~~~~--~~~l~~~--~~~~g~~~~a~---------~~~~ 163 (500)
.|+..+-..+-..+ .+.+++++|.++++++.+..... .+... +-.++.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35555555555555 78899999999999987642221 12221 1222211 00011111111 3333
Q ss_pred HHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 164 RMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--FAPN----NKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
.+...............+......+...|++++|...|++..+- ..++ ..++..+...+...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33211000000000012233344455666677776666666541 1122 33555566666666666666666655
Q ss_pred HHHCC--C---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 238 MVLRG--F---RP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 238 ~~~~g--~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
..+.. . .+ ...+++.+..+|...|++++|++.|++..+.. .+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~ 215 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-------------------------------MDI 215 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHT
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHc
Confidence 54320 0 00 13344555555555666666665555544310 000
Q ss_pred CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--
Q 041822 312 NLK-PDIGAYNAMISSLIRCRDLNAAMELMDEMEE-----KRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF-- 383 (500)
Q Consensus 312 ~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-- 383 (500)
+.. ....++..+...|...|++++|.+.|++..+ .... ...++..+...|.+.|++++|...+++..+...
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 100 0123444555555555555555555555444 2221 244455555666666666666666665543210
Q ss_pred -CCC-HHHHHHHHHHHHHcCC---HhhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 384 -VPK-TRTVVMLMKFFCVNFR---VDLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 384 -~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.+. ...+..+...+...++ +++|...++. .+..++ ...+..+...|...|++++|...|++..+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 2233333334444455 4444444443 222222 23455666677777777777777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-10 Score=107.36 Aligned_cols=267 Identities=10% Similarity=-0.012 Sum_probs=150.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNN-----KTMNILLLGFKESGDVTAMEMFYHEMVLRGF-RPS----VVTYNIR 253 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~l 253 (500)
....+...|++++|...+++..+..+++. .+++.+...+...|+++.|...+++..+... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33444556666666666666654322221 1345555566666777766666666554210 011 1224455
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC----CCHhhHHH
Q 041822 254 IDGYCKKGCFGDAMRLFEEMERV----ACL--P-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK----PDIGAYNA 322 (500)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 322 (500)
...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 56666677777777777665432 211 2 2334455666667777777777777665543211 12345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHHHHH
Q 041822 323 MISSLIRCRDLNAAMELMDEMEEKRIGHD-NVTYH-----TMFFGLMKSSGLEGVCKLYDRMIEGKFVP---KTRTVVML 393 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l 393 (500)
+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 66777777777777777776654311111 11111 12233667788888877777765432111 12345556
Q ss_pred HHHHHHcCCHhhHHHHHHHHHHC----CCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 394 MKFFCVNFRVDLGLNLWGYLIDR----GFCPHG-HALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
...+...|++++|...++...+. |..++. ..+..+..++...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777778888888777776542 222222 2555566677778888888888777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-10 Score=97.57 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+..|. +...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Confidence 3445556666667777777777777766542 445666666677777777777777777776665443 334555556
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..+...|++++|.+.++++... .+.+...+..+...+...|++++|.+.++++.+..+.+..++..+...+...|
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 6666666666666666666554 34455556666666666666666666666665533445555555555555666
Q ss_pred CHHHHHHHHHHHHH
Q 041822 227 DVTAMEMFYHEMVL 240 (500)
Q Consensus 227 ~~~~a~~~~~~~~~ 240 (500)
++++|...++...+
T Consensus 159 ~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 159 RHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-10 Score=96.58 Aligned_cols=163 Identities=12% Similarity=0.025 Sum_probs=100.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+...|++++|.+.++.+.+..|. +...+..+...+...|++++|...++++... .+.+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 82 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF--DVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHH
Confidence 4555666666667777777777666655443 3445555666666667777777766666554 34455666666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
...+...|++++|.+.++++.+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666665445556666666666666666666666666665543 224555666666666666666
Q ss_pred HHHHHHHHHHH
Q 041822 265 DAMRLFEEMER 275 (500)
Q Consensus 265 ~a~~~~~~m~~ 275 (500)
+|.+.+++..+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-11 Score=118.53 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=148.3
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....++.|..++...|++++|++.|+++++.. +-+..++..+..++.+.|++++|++.|++..+..|+ ...++..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~n 82 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Confidence 446678889999999999999999999999863 556888999999999999999999999999998776 4568888
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
+..+|...|++++|++.|++..+. .+.+..+|+.+..+|.+.|++++|++.|++..+-.+-+...+..+..++..
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l-----~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 999999999999999999999877 577889999999999999999999999999998666788999999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 041822 225 SGDVTAMEMFYHEMVL 240 (500)
Q Consensus 225 ~~~~~~a~~~~~~~~~ 240 (500)
.|++++|.+.+++..+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999998888887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=117.95 Aligned_cols=168 Identities=11% Similarity=0.068 Sum_probs=151.7
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
|-+..+++.+..++.+.|++++|++.|++..+..|+ ...++..+...|.+.|++++|+..|++..+. .+.+..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~~ 78 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFAD 78 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Confidence 345678999999999999999999999999999776 4568889999999999999999999999887 577889
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
+|+.+..+|.+.|++++|++.|++..+-.+-+...|+.+..++.+.|++++|...|++..+.. +-+...+..+..++..
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 999999999999999999999999998667789999999999999999999999999999874 2367889999999999
Q ss_pred cCChhHHHHHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMER 275 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~ 275 (500)
.|++++|.+.+++..+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-10 Score=103.00 Aligned_cols=231 Identities=13% Similarity=0.047 Sum_probs=157.7
Q ss_pred cCChHHHHHHHHHhhcC------CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh------CCCCccHHHHHHHHH
Q 041822 80 HSNGLKALEFFKFTLQH------PHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT------HPSLLTLKSMSIMLS 147 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~ 147 (500)
.|++++|+..|+.+++. ...+....++..+...+...|++++|...++++.+. ........++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555555441 011334567889999999999999999999998875 222344567888899
Q ss_pred HHhccccHHHHHHHHHHHHHHHhc---cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--------CCCCHHhHH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFV---GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--------FAPNNKTMN 216 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~ 216 (500)
.|...|++++|...|++....... +..+....++..+...+...|++++|...|++..+. .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999988765210 001334678899999999999999999999998752 223456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChhHHHH------HHHHHHHcCCCCCH
Q 041822 217 ILLLGFKESGDVTAMEMFYHEMVLR-------GFRPS-VVTYNIRIDGYCKKGCFGDAMR------LFEEMERVACLPSL 282 (500)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~-~~~~~~li~~~~~~g~~~~a~~------~~~~m~~~~~~~~~ 282 (500)
.+..++...|++++|...+++..+. ...+. ...|..+...+...+....+.. .++.... ..+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 9999999999999999999988764 11222 2233333333333333332222 2221111 112235
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 283 QTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
.++..+...|...|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888899999999999999999987664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-09 Score=93.15 Aligned_cols=193 Identities=9% Similarity=0.001 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC-CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFT-PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
..+......+...|++++|++.|+.+.+.. + ++...+..+..++...|++++|++.+++..+..|. ....+..+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~ 83 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN--LANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc--hHHHHHHHH
Confidence 445556666777777777777777777652 3 56666666777777777777777777777776554 445666677
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CHHhHHH
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGS-------EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAP--NNKTMNI 217 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~ 217 (500)
..|...|++++|+..|++..+. .|.+. .+|..+...+...|++++|++.|++..+..+. +...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA-----VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 7777777777777777777665 34444 44666667777777777777777777664344 4556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
+..++...| ...++.+...+ ..+...|..... ...+.+++|+..|++..+..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 666664433 23334443332 112333333222 22345666666666666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=94.28 Aligned_cols=155 Identities=11% Similarity=0.036 Sum_probs=95.0
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhh
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEE 180 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 180 (500)
.++..+......+...|++++|.+.|+...+..|. .+...+..+..++...|++++|+..|++..+. .|.+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 78 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNLANA 78 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CcchHHH
Confidence 34566666666666677777777777766665541 12234444666666667777777777666654 3445666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN-------KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS---VVTY 250 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~ 250 (500)
|..+..++...|++++|...|++..+..+.+. ..|..+...+...|++++|...|++..+. .|+ ...|
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 156 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHH
Confidence 66677777777777777777777665444444 44666666666677777777776666654 333 3455
Q ss_pred HHHHHHHHhcCCh
Q 041822 251 NIRIDGYCKKGCF 263 (500)
Q Consensus 251 ~~li~~~~~~g~~ 263 (500)
..+..+|...|+.
T Consensus 157 ~~l~~~~~~~~~~ 169 (228)
T 4i17_A 157 YSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=103.74 Aligned_cols=232 Identities=11% Similarity=-0.011 Sum_probs=104.0
Q ss_pred cCCCHHHHHHHHHHhhh--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 041822 190 TQKEMKEARSVFVKLLS--------RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR------GF-RPSVVTYNIRI 254 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li 254 (500)
..|++++|+..|++..+ ..+....++..+...+...|++++|...+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 11123344555555555555555555555555433 11 11233444455
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLN 334 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 334 (500)
..|...|++++|.+.|++..+.. ++......+....++..+...|...|+++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHH----------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 55555555555555555544320 00000000112334555555555555555
Q ss_pred HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHH
Q 041822 335 AAMELMDEMEEK------RIGH-DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG-------KFVPK-TRTVVMLMKFFCV 399 (500)
Q Consensus 335 ~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~-~~~~~~ll~~~~~ 399 (500)
+|...+++..+. +..| ....+..+...|...|++++|.+.+++..+. ...+. ...+..+......
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 555555554432 1011 2334555556666666666666666655431 11121 1122222222222
Q ss_pred cCCHhhHHHHHHHHHH----CC--CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 400 NFRVDLGLNLWGYLID----RG--FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 400 ~~~~~~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.+....+.. +..+.. .+ .+....++..+...|...|++++|..++++..+
T Consensus 225 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 225 KDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp TCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222222211 111111 11 111234566777788888888888888877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-09 Score=95.35 Aligned_cols=186 Identities=10% Similarity=-0.050 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc-HHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT---PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT-LKSM 142 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 142 (500)
...+-.+...+...|++++|++.|+.+.+.. |.+ ...+..+..++.+.|++++|...|+.+.+..|..+. ..++
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444456677788999999999999999863 334 677888999999999999999999999998775533 4566
Q ss_pred HHHHHHHhc--------cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHh
Q 041822 143 SIMLSRISK--------FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKT 214 (500)
Q Consensus 143 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~ 214 (500)
..+..++.. .|++++|+..|+++... .|.+......+... ..+... -...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~--------------~~~~~~---~~~~ 150 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKI--------------RELRAK---LARK 150 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHH--------------HHHHHH---HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHH--------------HHHHHH---HHHH
Confidence 677777877 99999999999998876 34444444222111 000000 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHc
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFR--PSVVTYNIRIDGYCKK----------GCFGDAMRLFEEMERV 276 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 276 (500)
+..+...+.+.|++++|...|+.+++.... .....+..+..+|... |++++|+..|+++.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 344555556666666666666665554211 0123444555555544 5666666666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-09 Score=93.92 Aligned_cols=215 Identities=10% Similarity=0.039 Sum_probs=153.5
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT-LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (500)
+.+...+-.....+.+.|++++|...|+.+.+..|.... ..++..+..+|.+.|++++|+..|++....... .+...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI--DPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--CchhH
Confidence 356677888888899999999999999999998776532 567778888899999999999999999876311 12234
Q ss_pred hhHHHHHHHHHc--------CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 179 EEFNVLLQAFCT--------QKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 179 ~~~~~ll~~~~~--------~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
.++..+..++.. .|++++|...|+++.+..+.+......+.... .+... -...+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~--------------~~~~~----~~~~~ 151 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR--------------ELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH--------------HHHHH----HHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH--------------HHHHH----HHHHH
Confidence 567888888888 99999999999999875444444333322111 11110 11225
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc----------CCHHHHHHHHHhchhCCCCCCH-
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMERVACL--PSLQTITTLIHGAGLV----------RNIHQARQLFDEMPKRNLKPDI- 317 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~- 317 (500)
..+...|.+.|++++|+..|+++.+.... .....+..+..+|... |++++|...|+++.+.. |+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCCh
Confidence 66788899999999999999999876411 1245677777788766 88999999999998863 333
Q ss_pred ---hhHHHHHHHHHhcCCHHHH
Q 041822 318 ---GAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 318 ---~~~~~li~~~~~~g~~~~a 336 (500)
.....+-..+...++++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555555555555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-09 Score=94.45 Aligned_cols=127 Identities=8% Similarity=-0.066 Sum_probs=57.1
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHhHHHHHHH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKF-GSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--FAPN----NKTMNILLLG 221 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~l~~~ 221 (500)
|...|++++|...|++..........++ ...+|+.+..+|.+.|++++|+..|++..+- ...+ ..+++.+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666666666655543311000011 1345566666666666666666666655430 0001 2344444444
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 222 FKES-GDVTAMEMFYHEMVLRGFR-PS----VVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 222 ~~~~-~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|... |++++|...|++..+.... .+ ..+++.+...+.+.|++++|+..|++..+
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4443 5555555555444432000 00 12344444444455555555555554444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.7e-09 Score=89.54 Aligned_cols=166 Identities=10% Similarity=-0.004 Sum_probs=86.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH----------------HHHHHhccccHHHHHHHHHHHHHHHhc
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI----------------MLSRISKFQSYEETLEAFDRMEREIFV 171 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~ 171 (500)
.....+...|++++|...|+...+..|+. ...+.. +...|.+.|++++|+..|++..+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 83 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDR--TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--- 83 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHH--HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 33444445555555555555555543321 112222 555566666666666666666655
Q ss_pred cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHH
Q 041822 172 GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV--TAMEMFYHEMVLRGFRPSVVT 249 (500)
Q Consensus 172 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~ 249 (500)
.|.+..+|..+..++...|++++|...|++..+..|.+..++..+..++...|+. +.+...+..... ..|....
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 3556666666666666666666666666666654455666666666665544332 233333333321 1122222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041822 250 YNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQT 284 (500)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 284 (500)
+.....++...|++++|+..|++..+.. |+...
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~ 192 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHH
Confidence 2333344445566666666666665543 55433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-08 Score=87.95 Aligned_cols=200 Identities=12% Similarity=0.055 Sum_probs=118.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCC-CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH-HHHHHHHHHH
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTP-TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL-KSMSIMLSRI 149 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 149 (500)
.++..+...|++++|+..|+.+.+.....+ ....+..+..++.+.|++++|+..|+++.+..|..... .++..+..++
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 445666778888888888888876421112 13567777788888888888888888888877765542 1333333333
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
...|.. .+ ..|..+...+...|++++|...|+++.+..|-+...+........
T Consensus 89 ~~~~~~-----~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~------ 141 (225)
T 2yhc_A 89 MALDDS-----AL----------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF------ 141 (225)
T ss_dssp HHHHC-----------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH------
T ss_pred Hhhhhh-----hh----------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH------
Confidence 332210 00 112233344456778888988888888765555554433221110
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHH
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS----LQTITTLIHGAGLVRNIHQARQLF 305 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~ 305 (500)
+...+. .....+...|.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|+.++|.+.+
T Consensus 142 ----~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 142 ----LKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp ----HHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 101110 112345667778888888888888887753 33 245777778888888888888888
Q ss_pred HhchhCC
Q 041822 306 DEMPKRN 312 (500)
Q Consensus 306 ~~~~~~~ 312 (500)
+.+...+
T Consensus 208 ~~l~~~~ 214 (225)
T 2yhc_A 208 KIIAANS 214 (225)
T ss_dssp HHHHHCC
T ss_pred HHHHhhC
Confidence 8777764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.3e-09 Score=93.55 Aligned_cols=212 Identities=9% Similarity=-0.019 Sum_probs=150.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCC---CC-ccHHHHHHHHHHHhccccHHH
Q 041822 82 NGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHP---SL-LTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~g~~~~ 157 (500)
++++|...|+.+ ...+...|++++|.+.|++..+..+ +. ....++..+...|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366777776665 4457788999999999988876421 11 124567788888999999999
Q ss_pred HHHHHHHHHHHHhccccC-CChhhHHHHHHHHHcC-CCHHHHHHHHHHhhhCCCC--C----HHhHHHHHHHHHhcCCHH
Q 041822 158 TLEAFDRMEREIFVGIRK-FGSEEFNVLLQAFCTQ-KEMKEARSVFVKLLSRFAP--N----NKTMNILLLGFKESGDVT 229 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~-~~~~~A~~~~~~m~~~~~~--~----~~~~~~l~~~~~~~~~~~ 229 (500)
|+..|++........... .-..+++.+...|... |++++|+..|++..+-.+. + ..++..+...+.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 999999877653210000 0145788999999996 9999999999998852111 1 457889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--cc
Q 041822 230 AMEMFYHEMVLRGFRPSV------VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL------QTITTLIHGAG--LV 295 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~--~~ 295 (500)
+|...|++..+....... ..|..+..++...|++++|...|++..+.. |+. ..+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999987433221 156777888889999999999999887643 321 12344455554 44
Q ss_pred CCHHHHHHHHHhchhC
Q 041822 296 RNIHQARQLFDEMPKR 311 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~ 311 (500)
+++++|++.|+.+...
T Consensus 254 ~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhccCCcc
Confidence 5677788777776553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.08 E-value=7.2e-09 Score=81.05 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=61.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
.+...+...|++++|...|+++... .+.+...+..+...+...|++++|...|+++.+..+.+...+..+...+.
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444444555555555555555443 23344445555555555555555555555554433334444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
..|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555544432 12344444444555555555555555554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-09 Score=107.62 Aligned_cols=185 Identities=11% Similarity=0.054 Sum_probs=141.1
Q ss_pred HcCCChHHHHHHHHHhH--------hhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 114 ARMRYFDQAWELMSHVQ--------RTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
...|++++|++.+++.. +..|. +...+..+...+...|++++|++.|++..+. .+.+...|..+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAER-----VGWRWRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CcchHHHHHHHH
Confidence 67788888888888887 55444 4456777777888889999999988888877 366788888888
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 265 (500)
.++...|++++|.+.|++..+-.+.+...|..+..++.+.|++++ ...|++..+.. +-+...|..+..++.+.|++++
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHH
Confidence 888889999999999988887556678888888888888999888 88888888764 2366788888888889999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC--------HHHHHHHHHhch
Q 041822 266 AMRLFEEMERVACLPS-LQTITTLIHGAGLVRN--------IHQARQLFDEMP 309 (500)
Q Consensus 266 a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~ 309 (500)
|++.|++..+.+ |+ ...+..+..++...++ +++|.+.+..+.
T Consensus 553 A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 553 AVRTLDEVPPTS--RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHTSCTTS--TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhcccC--cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 999998887754 44 4566666666655443 566666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-08 Score=79.79 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
+..+...+...|++++|..+++++.+..|. +...+..+...+...|++++|...|+++... .+.+...+..+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~ 76 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCchHHHHHHH
Confidence 444555555556666666666655554433 2334445555555566666666666665544 234455566666
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
..+...|++++|.+.++++.+..+.+..++..+...+.+.|++++|...++++.+.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666666666666666666544445566666666666666666666666665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-08 Score=88.11 Aligned_cols=179 Identities=9% Similarity=0.021 Sum_probs=95.5
Q ss_pred HHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 197 ARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 197 A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|+..|++..+..+++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555543344555555666666666777777766666655432 12455566666666677777777777776665
Q ss_pred cCCCC-----CHHHHHHHHHH--HHccC--CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 276 VACLP-----SLQTITTLIHG--AGLVR--NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 276 ~~~~~-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.. | +..+...+..+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 AI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred cC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 4 24444444444 22222 566666666666554 233223333334566666666666666654432
Q ss_pred C-----C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 347 R-----I----GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 347 ~-----~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
- . .-+..+...+|......|+ +|.+++.++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0 0 1134444333333334454 566666666653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-08 Score=85.40 Aligned_cols=169 Identities=9% Similarity=-0.048 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH-HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTP-DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
...+..++.++...|++++|+..|+.+.+...-.+.. .++..+..++...|. ..++ .+..+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~-----~~~~-------------~~~~~ 102 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD-----SALQ-------------GFFGV 102 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh-----hhhh-------------hhhcc
Confidence 4556677888999999999999999999853111221 244444444443321 0111 12223
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+...|++++|...|+++.+. .|.+..++....... .+...+ ......+...+.+.
T Consensus 103 ~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~----------~~~~~~-------~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 103 DRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLV----------FLKDRL-------AKYEYSVAEYYTER 160 (225)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHH----------HHHHHH-------HHHHHHHHHHHHHH
T ss_pred chhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHH----------HHHHHH-------HHHHHHHHHHHHHc
Confidence 34455678999999999998776 344444443222110 011111 01123456677788
Q ss_pred CCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 226 GDVTAMEMFYHEMVLRGFRPS----VVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
|++++|...|+.+++. .|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 161 ~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp TCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 8888888888888776 232 2456777788888888888888888877764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-07 Score=82.67 Aligned_cols=244 Identities=9% Similarity=0.037 Sum_probs=156.5
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
++-..-.|.+..++.-...+.. ......-..+.+++...|+++.. ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~--- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK--- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT---
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc---
Confidence 4445567888777763333221 11223444455777777776531 1123444344444333 3322
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL-KPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 265 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
|+..|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677788777655 45556666777888888999999999888766653 235677788888889999999999999888
Q ss_pred HHCCCCC-----CHHHHHHHHHHH--HHcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHH
Q 041822 344 EEKRIGH-----DNVTYHTMFFGL--MKSS--GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414 (500)
Q Consensus 344 ~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 414 (500)
.+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775 23 245555566563 3334 788899999988654 4553344445557788899999999988766
Q ss_pred HCC---------CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 415 DRG---------FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 415 ~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
+.. -+-+..++-.+|......|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 421 02355666455655556676 788888888864
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-07 Score=81.50 Aligned_cols=232 Identities=9% Similarity=0.014 Sum_probs=116.1
Q ss_pred HHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC--ChHHHHHHHHHhHhhCCCCccHHHHHHHHHHH---
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR--YFDQAWELMSHVQRTHPSLLTLKSMSIMLSRI--- 149 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 149 (500)
....+....++|+++++.++..+ |-+...|+..-.++...| +++++++.++.+....|...+ +|+.--..+
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--aW~~R~~iL~~~ 116 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--IWNYRQLIIGQI 116 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH--HHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH--HHHHHHHHHHHH
Confidence 33334444467777777777653 344455677777777777 777777777777777665433 444333323
Q ss_pred -hcc---ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHH--HHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 150 -SKF---QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK--EARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 150 -~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
... +++++++..++.+.+. .+.+..+|+.-.-.+.+.|.++ ++++.++++.+..+-|...|+.-.....
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~-----~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSS-----DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 333 4555555555555554 3445555555555555555554 5555555555443445555544444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN-IHQAR 302 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~ 302 (500)
+.+... ....++++++.++++.... +-|...|+-+-..+.+.|+ .+.+.
T Consensus 192 ~l~~~~-----------------------------~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 192 SKKHLA-----------------------------TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp SSGGGC-----------------------------CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred hccccc-----------------------------hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHH
Confidence 333300 0000444555555544433 2344444444444444444 22233
Q ss_pred HHHHhchhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 303 QLFDEMPKRN--LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345 (500)
Q Consensus 303 ~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 345 (500)
.+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3444333321 112444555555555555555555555555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-09 Score=105.91 Aligned_cols=201 Identities=11% Similarity=0.053 Sum_probs=159.7
Q ss_pred hHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHH--------HHHhccccCCChhhHHHHHHHHHcCCCHHHHHHH
Q 041822 129 VQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRME--------REIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSV 200 (500)
Q Consensus 129 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 200 (500)
+....|..+....+ .+ ...|++++|++.+++.. .. .+.+...+..+..++.+.|++++|.+.
T Consensus 386 ~p~~~p~~~~a~~~----~a-~~~~~~~~A~~~~~~al~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~ 455 (681)
T 2pzi_A 386 VPLVDPTDVAASVL----QA-TVLSQPVQTLDSLRAARHGALDADGVD-----FSESVELPLMEVRALLDLGDVAKATRK 455 (681)
T ss_dssp CBCCCTTSTTHHHH----HH-TTTCCHHHHHHHHHHHHTC-------C-----CTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CccCCCCCcchHHh----hc-ccccCHHHHHHHHHHhhhhcccccccc-----cccchhHHHHHHHHHHhcCCHHHHHHH
Confidence 34556655443222 22 68899999999999987 43 466788999999999999999999999
Q ss_pred HHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041822 201 FVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP 280 (500)
Q Consensus 201 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 280 (500)
|++..+..+.+...|..+..++...|++++|...|++..+.. +-+...|..+..+|.+.|++++ ++.|++..+.+ +-
T Consensus 456 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~ 532 (681)
T 2pzi_A 456 LDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DG 532 (681)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TT
T ss_pred HHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-Cc
Confidence 999998667789999999999999999999999999998874 2257788899999999999999 99999998865 34
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCC--------HHHHHHHHHHH
Q 041822 281 SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRD--------LNAAMELMDEM 343 (500)
Q Consensus 281 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~~ 343 (500)
+...|..+..++.+.|++++|.+.|++..+.+ +-+...+..+..++...++ +++|.+.+..+
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 67789999999999999999999999998864 2245677777777766444 55555555444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=86.31 Aligned_cols=146 Identities=8% Similarity=0.035 Sum_probs=95.5
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
|..++...|+.++|++.+..+.... +-++..+-.+...|.+.|++++|++.|++..+..|+ +..++..+..+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Confidence 3445556677778888777776542 223344556777777788888888888887777655 445667777777777
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHH-HHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSV-FVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~-~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
|++++|+..|++..+. .|.+..+|..+...|.+.|+.++|.+. +++..+-.|-+..+|......+...|+
T Consensus 79 ~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVEL-----NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777777665 355677777777777777777665544 466665445566666666666555553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-07 Score=83.72 Aligned_cols=216 Identities=10% Similarity=0.020 Sum_probs=170.3
Q ss_pred ChHHHHHHHHHHHhhcC--ChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHH----HcC---CChHHHHHHHHHhHhhCCC
Q 041822 65 SSTLVENVLGRLFAAHS--NGLKALEFFKFTLQHPHFTPTPDAFEKTLHIL----ARM---RYFDQAWELMSHVQRTHPS 135 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~a~~~~~~~~~~~~~ 135 (500)
....+|+.-..++...+ ++++++++++.++... |-+..+|+....++ ... +++++++++++.+.+. +
T Consensus 65 ~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~ 140 (306)
T 3dra_A 65 SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--D 140 (306)
T ss_dssp TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--C
Confidence 34555666666666777 9999999999999863 55667777666666 555 7899999999999987 9
Q ss_pred CccHHHHHHHHHHHhccccHH--HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC------HHHHHHHHHHhhhC
Q 041822 136 LLTLKSMSIMLSRISKFQSYE--ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE------MKEARSVFVKLLSR 207 (500)
Q Consensus 136 ~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~A~~~~~~m~~~ 207 (500)
..+..+|..-.-.+.+.|.++ ++++.++++.+. .+.|..+|+.-...+.+.+. ++++++.++++...
T Consensus 141 pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 141 PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK 215 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence 999999999999999999988 999999999987 57789999988888888877 88999999999887
Q ss_pred CCCCHHhHHHHHHHHHhcCCHH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041822 208 FAPNNKTMNILLLGFKESGDVT-AMEMFYHEMVLRG--FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQT 284 (500)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 284 (500)
.+-|...|+.+...+.+.|+.. .+..+..++.+.+ -..+...+..+.++|.+.|+.++|.++++.+.+.--+.....
T Consensus 216 ~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 216 CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence 7889999999999988888754 4555666655432 134677888888899889999999999999876321334444
Q ss_pred HHHHH
Q 041822 285 ITTLI 289 (500)
Q Consensus 285 ~~~ll 289 (500)
|+...
T Consensus 296 W~~~~ 300 (306)
T 3dra_A 296 WDYQI 300 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-08 Score=84.69 Aligned_cols=162 Identities=10% Similarity=-0.005 Sum_probs=88.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH----------------HHHHHHcCCCHHHHHHHHHHhh
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV----------------LLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
+......+...|++++|+..|++.... .|.+...|.. +..++.+.|++++|...|++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL-----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445567888899999988888776 2445555655 6666666666666666666666
Q ss_pred hCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHH
Q 041822 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC--FGDAMRLFEEMERVACLPSLQ 283 (500)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~ 283 (500)
+..|.+...+..+..++...|++++|...|++..+.. +-+...|..+..+|...|+ .+.+...++.... ..|...
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 5445556666666666666666666666666665542 2244555555555544332 2233333333322 112222
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
.+.....++...|++++|...|++..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222333344455556666666555553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-07 Score=81.10 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 247 VVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
...+..+...|...+++++|+++|++..+.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 47 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ 47 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-08 Score=90.24 Aligned_cols=168 Identities=7% Similarity=-0.023 Sum_probs=136.3
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
+.+...+..+...+...|++++|...+++..+..|+. ...+..+...+.+.|++++|...++++.... + +..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-----p-~~~ 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN--GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-----Q-DTR 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-----C-SHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-----c-chH
Confidence 4556778888888999999999999999999987764 4577888889999999999999999886552 3 333
Q ss_pred -hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 041822 180 -EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR-PSVVTYNIRIDGY 257 (500)
Q Consensus 180 -~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~ 257 (500)
........+.+.++.+.|...+++..+..|.+...+..+...+...|++++|...|.++.+.... .+...+..+...+
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 23333344667788888999999998877888999999999999999999999999999887322 1266788999999
Q ss_pred HhcCChhHHHHHHHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~ 275 (500)
...|+.++|...|++...
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.2e-09 Score=85.40 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=24.2
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 76 LFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
.+...|++++|+..|+.+.+.. |.+...+..+..++...|++++|...++.+.+.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 3344444444444444444321 233344444444444444444444444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-06 Score=81.23 Aligned_cols=360 Identities=11% Similarity=-0.011 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC-hHHHHHHHHHhHhh-CCCCccHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY-FDQAWELMSHVQRT-HPSLLTLKSMS 143 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~~~~~~~~~~ 143 (500)
...+|...+..+-. ++++.+..+|++++.. .|+...|...+....+.++ .+....+|+..... +.+..+...|.
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 34445444444433 7899999999999985 4799999988888877663 45677888887764 43555677888
Q ss_pred HHHHHHh----ccccHHHHHHHHHHHHHHHhccccCCCh-hhHHHHHHHHHc-------------CCCHHHHHHHHHHhh
Q 041822 144 IMLSRIS----KFQSYEETLEAFDRMEREIFVGIRKFGS-EEFNVLLQAFCT-------------QKEMKEARSVFVKLL 205 (500)
Q Consensus 144 ~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~-------------~~~~~~A~~~~~~m~ 205 (500)
..+..+. ..|+.+.+.++|++.... +..+. ..|......-.. .+.+..|..+++.+.
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-----P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~ 164 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQT-----PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQ 164 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTS-----CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhC-----hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8777654 357788899999988652 11111 122222111000 012233444444443
Q ss_pred hCCC-CCHHhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 206 SRFA-PNNKTMNILLLGFKESG--D-----VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 206 ~~~~-~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
...+ .+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.++|..+|++....
T Consensus 165 ~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 165 PLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp HHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 2111 13334544444322211 0 234566777776642 345677777777777788888888888887776
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHH-HHHHHhchhCC-----C---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041822 278 CLPSLQTITTLIHGAGLVRNIHQA-RQLFDEMPKRN-----L---KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI 348 (500)
Q Consensus 278 ~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 348 (500)
+.+...|.. |....+.++. ..+.+...... . .....+|...+....+.+..+.|..+|+.. .. .
T Consensus 243 -P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~ 315 (493)
T 2uy1_A 243 -SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E 315 (493)
T ss_dssp -CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S
T ss_pred -CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C
Confidence 333222221 2221111111 11111110000 0 001234555555555566677777777766 21 1
Q ss_pred CCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH
Q 041822 349 GHDNVTYHTMFFGLMK-SSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD 426 (500)
Q Consensus 349 ~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 426 (500)
..+...|......-.. .++.+.|..+|+...+.- |+ +..+...+......|+.+.|..+|+.+. .....|.
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~ 388 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWD 388 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHH
Confidence 1222333221111111 235777777777666531 22 3334445555556677777777777652 2345666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 427 LLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
..+..-...|+.+.+.++++++..
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666555556777777776666653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-07 Score=81.36 Aligned_cols=179 Identities=9% Similarity=-0.025 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC----CHHHHHHH
Q 041822 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR----DLNAAMEL 339 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~ 339 (500)
.+|+++|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + +.++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888875 77788888888889999999999999998876 56778888888887 6 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHhhHHHHH
Q 041822 340 MDEMEEKRIGHDNVTYHTMFFGLMK----SSGLEGVCKLYDRMIEGKFV-PKTRTVVMLMKFFCV----NFRVDLGLNLW 410 (500)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~ 410 (500)
|++..+.| +...+..|...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .++.++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998775 66777778878876 78999999999998876521 126677778888877 78899999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcC-C-----CHHHHHHHHHHHHHcCCC
Q 041822 411 GYLIDRGFCPHGHALDLLVTGLCSR-G-----RWEEAFECSKQMLVRRRQ 454 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 454 (500)
++..+.+ .+...+..|...|... | +.++|..+|++..+.|..
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9998862 3444666777777643 3 899999999999888753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.9e-09 Score=82.31 Aligned_cols=144 Identities=10% Similarity=-0.023 Sum_probs=101.0
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+...|++++|+..++..... .+.+...+..+...|.+.|++++|++.|++..+-.+-+..+|..+..++.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~-----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS-----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS-----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34456678888888887776443 2334556777888888888888888888888875566788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHccC
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRL-FEEMERVACLPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~~ 296 (500)
|++++|...|+...+.. +-+...|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 79 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 88888888888887763 22567778888888888888776654 46666643 234556665555555554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-08 Score=82.93 Aligned_cols=161 Identities=12% Similarity=0.021 Sum_probs=76.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG-YC 258 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~ 258 (500)
.+..+...+.+.|++++|...|++..+..|.+...+..+..++.+.|++++|...++...+. .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 34445555555666666666666655433445555666666666666666666655554433 1222222211111 11
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC-CHhhHHHHHHHHHhcCCHHHHH
Q 041822 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP-DIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~ 337 (500)
..+...+|+..+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122223455555554432 1234445555555555555555555555555443221 2334455555555555555555
Q ss_pred HHHHHH
Q 041822 338 ELMDEM 343 (500)
Q Consensus 338 ~~~~~~ 343 (500)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-08 Score=90.03 Aligned_cols=166 Identities=9% Similarity=-0.031 Sum_probs=134.0
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHh-HH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKT-MN 216 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~ 216 (500)
+...+..+...+...|++++|...|++.... .|.+...+..+...+.+.|++++|...++++....+ +... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~ 189 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGL 189 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHH
Confidence 3456677778889999999999999999887 577889999999999999999999999999886433 4433 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcc
Q 041822 217 ILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL-PSLQTITTLIHGAGLV 295 (500)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~ 295 (500)
.....+.+.++.+.|...+++..+.. +.+...+..+...+...|++++|+..|+++.+..-. .+...+..+...+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 33334667788888898888888764 346888999999999999999999999999986521 1256789999999999
Q ss_pred CCHHHHHHHHHhchh
Q 041822 296 RNIHQARQLFDEMPK 310 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~ 310 (500)
|+.++|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999988876543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.3e-08 Score=87.62 Aligned_cols=199 Identities=10% Similarity=0.037 Sum_probs=112.5
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc-CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT-QKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
..|++++|.+++++..+.. +.. +.+ .++++.|...|.+. ...|...|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-----~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~ 53 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-----KTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLE 53 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----CCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHc-----ccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHH
Confidence 3577788888888776653 111 112 46777777776654 34566677777
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHH
Q 041822 230 AMEMFYHEMVLR----GFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERV----ACLP-SLQTITTLIHGAGLVRNIH 299 (500)
Q Consensus 230 ~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~ 299 (500)
+|...|.+..+. |-.. -..+|+.+...|.+.|++++|+..|++..+. |-.. ...++..+...|.. |+++
T Consensus 54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~ 132 (307)
T 2ifu_A 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS 132 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH
Confidence 777777766543 1000 1346677777788888888888888776542 1100 12345556666666 7777
Q ss_pred HHHHHHHhchhCCCC---C--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChh
Q 041822 300 QARQLFDEMPKRNLK---P--DIGAYNAMISSLIRCRDLNAAMELMDEMEEK----RIGHD-NVTYHTMFFGLMKSSGLE 369 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~ 369 (500)
+|+..|++..+.... + ...++..+...|.+.|++++|+..|++.... +..+. ...+..+...+...|+++
T Consensus 133 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 777766665442100 0 1245556666666666666666666655442 11111 113344444555556666
Q ss_pred HHHHHHHHHH
Q 041822 370 GVCKLYDRMI 379 (500)
Q Consensus 370 ~a~~~~~~~~ 379 (500)
+|...|++..
T Consensus 213 ~A~~~~~~al 222 (307)
T 2ifu_A 213 AAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6666666555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.3e-08 Score=97.58 Aligned_cols=152 Identities=10% Similarity=-0.021 Sum_probs=61.0
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (500)
|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+++..+..|. +...+..+...|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHH
Confidence 34444444444444331 223444444444444444444444444444444332 22334444444444444444444
Q ss_pred HHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHH
Q 041822 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES---GDVTAMEMFYHE 237 (500)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~ 237 (500)
.|++..+. .+.+...+..+..++.+.|++++|.+.|++..+..+.+...+..+..++... |+.++|...+++
T Consensus 79 ~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 79 LLQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 44444443 2333444444444444444444444444444443333444444444444444 444444444444
Q ss_pred HHHC
Q 041822 238 MVLR 241 (500)
Q Consensus 238 ~~~~ 241 (500)
..+.
T Consensus 154 al~~ 157 (568)
T 2vsy_A 154 AVAQ 157 (568)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=5e-08 Score=88.70 Aligned_cols=230 Identities=9% Similarity=0.001 Sum_probs=138.2
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETL 159 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (500)
.|++.+|.++++.+.+.. +.+ .+...+++++|...|+.. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 567788888888777631 111 011146667766666554 22355667777777
Q ss_pred HHHHHHHHHHhc-cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CC-CC--CHHhHHHHHHHHHhcCCHHHHH
Q 041822 160 EAFDRMEREIFV-GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RF-AP--NNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~-~~--~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
..|.+....... +....-..+|+.+...|.+.|++++|...|++..+ .. .+ -..+++.+..+|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777665443211 10111245677777777777888888777777654 11 11 13566777777777 8888888
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHH
Q 041822 233 MFYHEMVLR----GFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERV----ACLPS-LQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 233 ~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~ 302 (500)
..|++..+. |-.. ...+++.+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887776653 1000 1456777788888888888888888877652 21111 225556666677778888888
Q ss_pred HHHHhchhCCCCC-C---HhhHHHHHHHHHhcCCHHHHHHH
Q 041822 303 QLFDEMPKRNLKP-D---IGAYNAMISSLIRCRDLNAAMEL 339 (500)
Q Consensus 303 ~~~~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~a~~~ 339 (500)
..|++.. ..... + ......++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8888776 43211 1 22344555555 56777666653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-05 Score=78.21 Aligned_cols=362 Identities=9% Similarity=-0.057 Sum_probs=222.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc-HHHHHHH
Q 041822 83 GLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS-YEETLEA 161 (500)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 161 (500)
...|..+|+.+.... |. |+++.+..+|++.....| +...|...+....+.+. .+....+
T Consensus 11 i~~aR~vyer~l~~~---P~--------------~~~e~~~~iferal~~~p---s~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY---MS--------------KDYRSLESLFGRCLKKSY---NLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -CCHHHHHHHHHHHH---HT--------------TCHHHHHHHHHHHSTTCC---CHHHHHHHHHHHHHHC----CTHHH
T ss_pred hHHHHHHHHHHHHHC---CC--------------CCHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhCchHHHHHHH
Confidence 556666666666531 22 889999999999998654 66677777776655553 4556777
Q ss_pred HHHHHHHHhccccCCChhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCH--HhHHHHHHHHH------------
Q 041822 162 FDRMEREIFVGIRKFGSEEFNVLLQAFCT----QKEMKEARSVFVKLLSRFAPNN--KTMNILLLGFK------------ 223 (500)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~--~~~~~l~~~~~------------ 223 (500)
|+...... |..+.+...|...+..+.. .++.+.+.++|++.+. +|+.. ..|......-.
T Consensus 71 fe~al~~v--g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 71 YEFTLGQF--ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHS--TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHc--CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 87766542 3245577888888887653 3678899999999987 33221 12221111100
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 041822 224 -ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG--C-----FGDAMRLFEEMERVACLPSLQTITTLIHGAGLV 295 (500)
Q Consensus 224 -~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 295 (500)
..+.+..|..+++++...--..+...|...+..-...+ - .+.+..+|+++.... +.+...|...+.-+.+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 01123334444444443200113446666555432221 1 345678899988753 45677888888888899
Q ss_pred CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHH
Q 041822 296 RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR---------I---GHDNVTYHTMFFGLM 363 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~ 363 (500)
|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.- . ......|...+....
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 9999999999999987 33332222 23332222222 22222210 0 001244666666666
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV-NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 442 (500)
+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.. +-+...+...++...+.|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 788899999999998 321 2344444422222222 347999999999998853 223455667788778899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 443 ECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 443 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
.+|+++. -....|...+..=...|+.+.+..+++....
T Consensus 375 ~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999972 2466777777777788999999885555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.4e-08 Score=96.83 Aligned_cols=154 Identities=9% Similarity=-0.071 Sum_probs=119.9
Q ss_pred CCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHH
Q 041822 116 MRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK 195 (500)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 195 (500)
.|++++|.+.+++..+..|. +...+..+...+...|++++|.+.|++..+. .+.+..+|..+..+|...|+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTCHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHH
Confidence 47889999999999887665 4567888888999999999999999998876 4667889999999999999999
Q ss_pred HHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHH
Q 041822 196 EARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK---GCFGDAMRLFEE 272 (500)
Q Consensus 196 ~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~ 272 (500)
+|.+.|++..+..+.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++... |++++|.+.+++
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999998667788999999999999999999999999998874 23677888899999999 999999999999
Q ss_pred HHHcC
Q 041822 273 MERVA 277 (500)
Q Consensus 273 m~~~~ 277 (500)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 98765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-05 Score=72.69 Aligned_cols=145 Identities=9% Similarity=0.051 Sum_probs=64.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR-YFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
.+.....+....++|+++++.++..+ |-+..+|+..-.++...| ++++++++++.+....|. +..+|+.-...+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHH
Confidence 33333344444455666666666542 333444555555555555 356666666665555443 3334443333333
Q ss_pred cc-c-cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHH--------HHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 151 KF-Q-SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK--------EARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 151 ~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
+. + +++++++.++++.+. .+.+..+|+.-.-.+.+.|.++ ++++.++++.+..+-|...|+....
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~-----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLP-----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSS-----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33 3 444555555444433 2334444444333333333332 4444444444333334444444444
Q ss_pred HHHhc
Q 041822 221 GFKES 225 (500)
Q Consensus 221 ~~~~~ 225 (500)
.+.+.
T Consensus 210 lL~~l 214 (349)
T 3q7a_A 210 LRVSR 214 (349)
T ss_dssp HHTTS
T ss_pred HHHhc
Confidence 43333
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=8e-06 Score=73.46 Aligned_cols=162 Identities=9% Similarity=-0.031 Sum_probs=92.8
Q ss_pred HHHHHccCCHHHHHHHHHhchhCCC-CCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 041822 289 IHGAGLVRNIHQARQLFDEMPKRNL-KPDI----GAYNAMISSLIRCRDLNAAMELMDEMEEKRIG-HD----NVTYHTM 358 (500)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 358 (500)
+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...|++..+.... ++ ...++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445556666666666665554321 1111 12233445555556667777776666653211 12 2246666
Q ss_pred HHHHHHcCChhHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHC----CCCCC-HhHHHH
Q 041822 359 FFGLMKSSGLEGVCKLYDRMIE----G-KFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDR----GFCPH-GHALDL 427 (500)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~~~~----~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 427 (500)
...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6677777777777777776652 1 11111 335666777777777777777777766642 21122 456777
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHH
Q 041822 428 LVTGLCSRGR-WEEAFECSKQMLV 450 (500)
Q Consensus 428 li~~~~~~g~-~~~A~~~~~~m~~ 450 (500)
+..+|.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777777774 5778777777653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.3e-06 Score=75.12 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=169.6
Q ss_pred CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC-C-C
Q 041822 117 RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ-SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ-K-E 193 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~ 193 (500)
+..++|+++++.+....|.. ..+|+.--..+...| .++++++.++.+... .|.+..+|+.-...+.+. + +
T Consensus 68 e~se~AL~lt~~~L~~nP~~--ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----nPKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAH--YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----NLKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHhcCCC
Confidence 33468999999999987764 456666555666677 599999999999877 577888999888888776 6 8
Q ss_pred HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 041822 194 MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT--------AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC--- 262 (500)
Q Consensus 194 ~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--- 262 (500)
+++++++++.+.+..+-|..+|+.-.....+.|.++ ++.+.++++.+.... |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 899999999999988889999988777777766666 899999999987543 78888888888777776
Q ss_pred ----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH--------------------HHHHHHHHhchhCC-----C
Q 041822 263 ----FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI--------------------HQARQLFDEMPKRN-----L 313 (500)
Q Consensus 263 ----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~ 313 (500)
++++++.+++..... +-|...|+-+-..+.+.|+. ........++...+ -
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 689999999988765 45777787766666665543 44555555555442 1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.++......+++.|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 357888999999999999999999999998754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=8.8e-07 Score=68.34 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 107 EKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 107 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
......+.+.|++++|++.|++..+..|. +...+..+..+|.+.|++++|+..|++..+. .+.+..+|..+..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~ 89 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhhhHHHHHHHH
Confidence 33344444444444444444444444332 2233334444444444444444444444433 2333444444444
Q ss_pred HHHcCCCHHHHHHHHHHhhh
Q 041822 187 AFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~ 206 (500)
++...|++++|.+.|++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 44444444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-07 Score=73.62 Aligned_cols=94 Identities=6% Similarity=-0.090 Sum_probs=43.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+.+.|++++|...|+.+.+..|. +...|..+..+|...|++++|+..|++.... .|.+...|..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P~~~~~~~~l 110 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CCCCcHHHHHH
Confidence 3444444444445555555555444444333 2233444444444444444444444444443 23344444444
Q ss_pred HHHHHcCCCHHHHHHHHHHhh
Q 041822 185 LQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~ 205 (500)
..+|.+.|++++|...|++..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-06 Score=72.15 Aligned_cols=123 Identities=7% Similarity=-0.052 Sum_probs=62.4
Q ss_pred HHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 041822 289 IHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGL 368 (500)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (500)
...+...|++++|...|++.. .|+...+..+...|...|++++|...|++..+.... +...|..+...|...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcccH
Confidence 334445555555555555442 234445555555555555555555555555443322 344455555555555555
Q ss_pred hHHHHHHHHHHhCC--------------CCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHC
Q 041822 369 EGVCKLYDRMIEGK--------------FVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 369 ~~a~~~~~~~~~~~--------------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 416 (500)
++|.+.|++..+.. ..|+ ...+..+..++...|++++|.+.++...+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555554421 1111 244555555566666666666666666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-06 Score=71.30 Aligned_cols=90 Identities=11% Similarity=-0.033 Sum_probs=40.0
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..+...|++++|...|++.... .+.+..++..+...+...|++++|...+++..+..+.+...+..+..++...|
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 3334444444444444444333 23334444444444444444444444444444333334444444444444444
Q ss_pred CHHHHHHHHHHHHHC
Q 041822 227 DVTAMEMFYHEMVLR 241 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~ 241 (500)
++++|...+++..+.
T Consensus 96 ~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 96 KFRAALRDYETVVKV 110 (166)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 554444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-06 Score=71.34 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
...+..+...+...|++++|...|++..+..+.+..++..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34567777888888889999988888887556678888888888888888988888888887763 33577788888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHhch
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTIT--TLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
...|++++|.+.|++..+.. +.+...+. .....+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999998888887754 22344443 33334667788888888877654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-06 Score=77.38 Aligned_cols=168 Identities=9% Similarity=0.045 Sum_probs=85.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCC--h
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL----KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG--S 178 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~ 178 (500)
.+...+..+...|++++|.+.++...+..+..... ..+..+...+...|++++|+..+++........ ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-IDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-SCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-CchHHHH
Confidence 34455666777788888888777766654332111 112223334455566666666666554321000 0001 2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-C
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPN----NKTMNILLLGFKESGDVTAMEMFYHEMVLRG----FRP-S 246 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g----~~~-~ 246 (500)
.+|+.+...|...|++++|...|++..+ ..+.+ ..+++.+...|.+.|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3556666666666666666666666552 11111 1355555666666666666666655544321 000 1
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHH
Q 041822 247 VVTYNIRIDGYCKKGCFGDA-MRLFEEM 273 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a-~~~~~~m 273 (500)
..+|..+..+|.+.|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455555555566666665 4444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=9.5e-07 Score=79.61 Aligned_cols=165 Identities=7% Similarity=0.033 Sum_probs=103.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHH----HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCC----h
Q 041822 107 EKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK----SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG----S 178 (500)
Q Consensus 107 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~ 178 (500)
...+..+...|++++|.+.++...+..+...+.. .+..+...+...|++++|+..|++...... ...+ .
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~---~~~~~~~~~ 155 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL---TGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC---CCSCTTHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc---ccccHHHHH
Confidence 3446677888889999988888877544433321 222355566667788888888887766321 1112 2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAP----NNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GFRPS- 246 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~~~- 246 (500)
.+++.+...|...|++++|...|+++.+ ..+. ...++..+...|.+.|++++|...+++..+. +..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 2577777788888888888888877763 1111 1235667777777777777777777665543 21112
Q ss_pred HHHHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 041822 247 VVTYNIRIDGYCKKGC-FGDAMRLFEEME 274 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 274 (500)
..+|..+..+|.+.|+ +++|.+.|++..
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4566666677777774 477777666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=82.98 Aligned_cols=95 Identities=14% Similarity=0.003 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
..+..+...+.+.|++++|...++...+..|. +...+..+..+|.+.|++++|+..+++..+. .+.+...+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~ 77 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKAHFF 77 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHH
Confidence 33444444444444444444444444444332 2233334444444444444444444444332 2333344444
Q ss_pred HHHHHHcCCCHHHHHHHHHHhh
Q 041822 184 LLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
+..++...|++++|...|++..
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-06 Score=72.85 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=41.6
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
+...+...|++++|++.|+.+. .|+...+..+..++...|++++|.+.+++..+..|. ....+..+...|...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHc
Confidence 3444445555555555555441 334445555555555555555555555555444332 223344444444444
Q ss_pred ccHHHHHHHHHHHHH
Q 041822 153 QSYEETLEAFDRMER 167 (500)
Q Consensus 153 g~~~~a~~~~~~~~~ 167 (500)
|++++|...|++...
T Consensus 85 ~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 85 EKYDLAIKDLKEALI 99 (213)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.4e-07 Score=68.77 Aligned_cols=99 Identities=9% Similarity=-0.004 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
...+......|.+.|++++|++.|++..+..+.+..+|..+..++.+.|++++|...+++.++.. +.+...|..+..+|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 44566677777777777777777777776556677777777777777777777777777776653 22566677777777
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 041822 258 CKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~ 277 (500)
...|++++|++.|++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 77777777777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.2e-07 Score=68.69 Aligned_cols=118 Identities=8% Similarity=0.131 Sum_probs=72.7
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
......+..+...+...|++++|++.|+.+.+.. +.+...+..+..++...|++++|.+.+++..+..|. +...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FIKGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--chHHHH
Confidence 4445555666666677777777777777776642 345666666667777777777777777776666543 344555
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT 190 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 190 (500)
.+...+...|++++|...|++.... .+.+...+..+..++..
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDL-----DSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHH
Confidence 5666666666666666666666554 23344455555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-06 Score=66.22 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=42.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+...|++++|.+.++++.+..|. +...+..+...+...|++++|...|+++... .+.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l 83 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHH
Confidence 3444444444444444444444444443322 2233334444444444444444444444433 23334444444
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~ 206 (500)
...+...|++++|...|+++.+
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-06 Score=66.64 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=104.3
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
+.+...+..+...+...|++++|...+++..+..|. +...+..+...+...|++++|...|++..+. .+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~ 85 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTFIK 85 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCchH
Confidence 456778889999999999999999999999987655 4567888888999999999999999999876 466788
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.+..+..++.+.|++++|.+.|++..+..+.+...+..+..++.+.|+
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999987555667788888888776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=76.13 Aligned_cols=122 Identities=11% Similarity=0.151 Sum_probs=82.5
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH-HHhcCCH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG-FKESGDV 228 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~-~~~~~~~ 228 (500)
...|++++|...+++.... .+.+...|..+...|...|++++|...|++..+..+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence 4556777777777776665 355667777777777777788888777777776445566677777777 6677776
Q ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 229 --TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 229 --~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
++|...++...+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 77777777777653 2245666677777777777777777777777654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-05 Score=71.97 Aligned_cols=164 Identities=11% Similarity=0.029 Sum_probs=85.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN------KTMNILLLGFKESGDVTAMEMFYHEMVLRGF---RPS--VV 248 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~~~--~~ 248 (500)
.+...+..+...|++++|.+.+.+..+..+... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455666667777777777766654222221 1233344455566666666666666654311 111 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH---cC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHhchhCC----CCC-CH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMER---VA-CLP--SLQTITTLIHGAGLVRNIHQARQLFDEMPKRN----LKP-DI 317 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 317 (500)
+|+.+...|...|++++|+..|++..+ .. ..+ ...++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 566666666667777777766666552 11 001 11345555555666666666666555544321 000 13
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAA-MELMDEM 343 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a-~~~~~~~ 343 (500)
.+|..+...|.+.|+.++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455555556666666665 4444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-07 Score=81.62 Aligned_cols=191 Identities=11% Similarity=-0.052 Sum_probs=120.8
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHH-------HHHHHcCCChHHHHHHHHHhHhhCCCCc--------------
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKT-------LHILARMRYFDQAWELMSHVQRTHPSLL-------------- 137 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------- 137 (500)
..+++..|.+.|..+...+ |-....|..+ ...+.+.++..++...+..-.+..|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 4788899999999988864 4556677766 4555555555555555555544222111
Q ss_pred -----cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-
Q 041822 138 -----TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN- 211 (500)
Q Consensus 138 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~- 211 (500)
...........+...|++++|.+.|+.+...+ +-+. ....+...+.+.+++++|+..|+...+...|.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-----p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-----SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-----CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 12233445566777788888888887765431 2233 55556667778888888888887554321111
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 212 -NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS--VVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 212 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23667777778888888888888877764432243 3345556667777788888888888877764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4e-07 Score=72.59 Aligned_cols=123 Identities=4% Similarity=-0.077 Sum_probs=86.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
....+.+.+...+.+.++.+ ..| .+...+..+...+.+.|++++|+..|++.... .|.+...|..+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~-------l~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~l 76 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA-------IPD--DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGL 76 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC-------SCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhC-------CCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 34555555555555444332 222 23445666666777788888888888887766 46677778888
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
..+|...|++++|+..|++..+-.|.+...|..+..++.+.|++++|...|+...+.
T Consensus 77 g~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 77 AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888887755667777888888888888888888888887776
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.4e-07 Score=75.57 Aligned_cols=119 Identities=7% Similarity=0.027 Sum_probs=51.9
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH-HhccccH--
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR-ISKFQSY-- 155 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 155 (500)
..|++++|+..|+.+.+.. +.+...+..+...+...|++++|...+++..+..|. +...+..+... +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCcch
Confidence 3445555555555544432 334444555555555555555555555555444332 22233333333 3344444
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
++|...|++.... .+.+...+..+...+...|++++|...|++..+
T Consensus 98 ~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALAL-----DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444444444443 233344444444444444444444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.6e-07 Score=81.05 Aligned_cols=193 Identities=9% Similarity=-0.028 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+...|++++|+..|+.+++.. +.+...+..+..++.+.|++++|...++...+..|. +...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 4556677788889999999999999999863 557888999999999999999999999999988665 456788888
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
.+|...|++++|...|++...... .+...+...+....+ ..++...........+.+......+.... .|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAK-----EQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-----HTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-----cchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 999999999999999999877642 121112112221111 11111111111123444444444443322 46
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVV-TYNIRIDGYCKK-GCFGDAMRLFEEMER 275 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~-g~~~~a~~~~~~m~~ 275 (500)
+.++|.+.++...+. .|+.. ....+...+.+. +.+++|.++|.+..+
T Consensus 150 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 666666666655544 33332 222233333333 456666666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-06 Score=65.62 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..|..+...+...|++++|.+.|+++.+..+.+..++..+...+.+.|++++|..+++++.+.. +.+...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 4455555555555555555555555554334445555555555555666666666555555442 224455555555666
Q ss_pred hcCChhHHHHHHHHHHHc
Q 041822 259 KKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~ 276 (500)
..|++++|.+.|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 666666666666655554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-06 Score=67.16 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
..+..+...+...|++++|...|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444444444444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-07 Score=76.64 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--C
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS------RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GFRP--S 246 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~~--~ 246 (500)
.++..+...+...|++++|...+++..+ ..+....++..+...+...|++++|...+++..+. |-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444444444444444444432 01112233444444444444444444444443322 1000 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 247 VVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
...+..+...+...|++++|...+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 223344444444455555555554444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-06 Score=65.88 Aligned_cols=115 Identities=7% Similarity=-0.041 Sum_probs=53.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
.+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...++...+.. +.+...+..+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 344444444455555555555555444333344445555555555555555555555544432 1234444445555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 296 (500)
.|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555544432 123334444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.9e-07 Score=77.84 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=62.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCC--HhhHHHHHHHHHhc
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPD--IGAYNAMISSLIRC 330 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 330 (500)
+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...+.. .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4444555556666655555554433 332233333344555566666666665443321 111 22455555556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 331 RDLNAAMELMDEMEEKRIGHD--NVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 331 g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666665553221132 123333445555666666666666666553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=7.1e-07 Score=71.13 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=59.5
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
+...+..+...+...|++++|...|+......|. +...+..+..+|...|++++|+..|++.... .|.+...+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~ 92 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCchHH
Confidence 3444555566666666666666666666665544 3345555556666666666666666666554 34455666
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
..+..+|...|++++|.+.|+...+
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-06 Score=74.27 Aligned_cols=85 Identities=13% Similarity=0.002 Sum_probs=42.2
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChh
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GFR-PSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~ 264 (500)
..|++++|.++++.+.........++..+...+...|++++|...+++..+. |.. ....++..+...|...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4556666666443333221234455666666666666666666666655441 111 12334455555555666666
Q ss_pred HHHHHHHHHH
Q 041822 265 DAMRLFEEME 274 (500)
Q Consensus 265 ~a~~~~~~m~ 274 (500)
+|.+.+++..
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8e-07 Score=70.81 Aligned_cols=99 Identities=11% Similarity=-0.040 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+...+..+...+...|++++|...|++.... .|.+...|..+..++...|++++|...|++..+..+.+...+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3345555666677777777777777777665 45567777777777777777777777777777644556677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+..++...|++++|...|+...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-06 Score=78.24 Aligned_cols=165 Identities=10% Similarity=-0.042 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (500)
.++++|++.|+...... +-+...+..+...+.+.|++++|...|++..+..|..... ..+.+..
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~ 190 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQK 190 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------ChHHHHH
Confidence 34445555554443321 2245567778888888888888888888888876654320 0000000
Q ss_pred HHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
+ .+....+|..+..+|.+.|++++|+..|++.++-.+.+...|..+..++...|++++|...|++..+
T Consensus 191 ----~--------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 191 ----A--------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp ----H--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----H--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 0112335556666666666666666666666654445566666666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 041822 241 RGFRPSVVTYNIRIDGYCKKGCFGDA-MRLFEEME 274 (500)
Q Consensus 241 ~g~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 274 (500)
.. +-+...+..+..++.+.|+.++| .+.|+.|.
T Consensus 259 l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 259 LY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 22455555666666666666665 33444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=69.58 Aligned_cols=95 Identities=8% Similarity=-0.051 Sum_probs=52.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+.+.|++++|...|+.+....|. +...+..+..+|...|++++|+..|++.... .|.+...+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 92 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DARYFLGLGACRQSLGLYEQALQSYSYGALM-----DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHHHHH
Confidence 3444555555556666666666665555443 3334555555555566666666666655554 34455555555
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~ 206 (500)
..++...|++++|.+.|+...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666655554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-05 Score=61.00 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=57.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
..+..+...+...|++++|...++......|. +...+..+...+...|++++|...+++.... .+.+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 77 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccHHHHHH
Confidence 34445555555566666666666665555443 2334455555555566666666666555544 2344555555
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+..++...|++++|.+.++...+..+.+...+..
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5666666666666666666555433334443333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.8e-06 Score=64.66 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=21.7
Q ss_pred HHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
..+...|++++|+..|+.+++.. +.+...+..+..++.+.|++++|+..++...+.
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33333444444444444433321 223333333444444444444444444444333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.3e-07 Score=76.55 Aligned_cols=88 Identities=13% Similarity=-0.133 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
.+|..+..+|.+.|++++|+..++...+..+.+...+..+..++...|++++|...|++..+.. +-+...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 3455555555555555555555555554334455555555555555555555555555555442 113444444444444
Q ss_pred hcCChhHHH
Q 041822 259 KKGCFGDAM 267 (500)
Q Consensus 259 ~~g~~~~a~ 267 (500)
..++..++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-05 Score=75.77 Aligned_cols=202 Identities=9% Similarity=-0.006 Sum_probs=137.1
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCH---------------HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTP---------------DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT 138 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 138 (500)
++.+...|++++|++.|..+.+...-..+. .++..+...|...|++++|.+.+..+.+..+....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345677899999999999998753221111 23678889999999999999999988774333222
Q ss_pred H----HHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CC--
Q 041822 139 L----KSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RF-- 208 (500)
Q Consensus 139 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~-- 208 (500)
. .+...+-..+...|+++.|..+++......... .......++..+...|...|++++|..++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 122233344556788999999888775542111 0112245678888899999999999999988764 11
Q ss_pred -CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 209 -APNNKTMNILLLGFKESGDVTAMEMFYHEMVLR--GFR-P-S--VVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 209 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~-~-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
+....++..++..|...|++++|..+++..... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 122457888888899999999999888876543 111 1 1 23455666677778888888887776643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00031 Score=63.28 Aligned_cols=99 Identities=10% Similarity=0.053 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC-HH
Q 041822 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ--SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE-MK 195 (500)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~ 195 (500)
+++++.+++.+....|. +..+|..-.-.+...| .+++++..++++.+. .+.|..+|+.-.-++...|. ++
T Consensus 90 l~~EL~~~~~~L~~~PK--ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-----dprNy~AW~~R~~vl~~l~~~~~ 162 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--SYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPA 162 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhCcCHH
Confidence 34555555555555443 3334443333333334 255555555555554 34455555555555555554 35
Q ss_pred HHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 196 EARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 196 ~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
++++.++.+.+..+-|...|+.....+.+
T Consensus 163 eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 163 EELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 55555555555444455555554444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.42 E-value=6.9e-06 Score=75.46 Aligned_cols=132 Identities=12% Similarity=0.007 Sum_probs=107.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---------------NKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+...|..+...+.+.|++++|...|++..+-.+.+ ..+|..+..++.+.|++++|...+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55667777777777777777777777777633333 588999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHhchh
Q 041822 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQA-RQLFDEMPK 310 (500)
Q Consensus 242 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 310 (500)
. +.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|+.+++ ...|+.|..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3478889999999999999999999999998875 34677888899999999999888 456666644
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00045 Score=62.27 Aligned_cols=167 Identities=8% Similarity=0.026 Sum_probs=120.0
Q ss_pred HcCCCh-HHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 114 ARMRYF-DQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS----------YEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 114 ~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
.+.|.+ ++|+++++.+....|...+ +|+.--..+...+. +++++..++.+... .|.+..+|+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~yt--aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-----~PKny~aW~ 112 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFAT--LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSYGTWH 112 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHH--HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHH--HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 344555 4788888888888776443 44433222322232 67888999988876 577888999
Q ss_pred HHHHHHHcCC--CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 183 VLLQAFCTQK--EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD-VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 183 ~ll~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
.-.-++...+ .+++++.+++.+.+..+-|..+|+.-..+....|. ++++...++.+++..+. |...|+.....+.+
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 8888888888 48999999999998778899999988888888888 58999999999887543 77788776666555
Q ss_pred c--------------CChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 260 K--------------GCFGDAMRLFEEMERVACLPSLQTITTLI 289 (500)
Q Consensus 260 ~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 289 (500)
. +.++++++.+.+..... +-|...|+-+-
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r 234 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHR 234 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4 34667777777776654 34555555433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.5e-06 Score=61.42 Aligned_cols=102 Identities=10% Similarity=-0.067 Sum_probs=65.8
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP--SVVTYNI 252 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ 252 (500)
+.+...+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...+++..+.. +. +...+..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 33455666666777777777777777777665445566666666666777777777777776666552 22 3556666
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHHcC
Q 041822 253 RIDGYCKK-GCFGDAMRLFEEMERVA 277 (500)
Q Consensus 253 li~~~~~~-g~~~~a~~~~~~m~~~~ 277 (500)
+..++... |++++|.+.+++..+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 66666666 67777777666666543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=61.74 Aligned_cols=90 Identities=7% Similarity=-0.053 Sum_probs=40.2
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+.+.|++++|+..|++.... .+.+...|..+..++.+.|++++|+..|++..+..+.+...|..+..++...
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 33344444444444444444433 2334444444444444444444444444444443333444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVL 240 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~ 240 (500)
|++++|...|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 444444444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3e-06 Score=66.88 Aligned_cols=96 Identities=7% Similarity=-0.081 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
.+..+...+.+.|++++|...|++.... .|.+...|..+..++.+.|++++|...|++..+..+.+...+..+..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3344444555666666666666665554 34455556666666666666666666666665544445555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 041822 221 GFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~ 241 (500)
++...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-05 Score=59.74 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..+..+...+...|++++|...|+...+..+.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3445555556666666666666666655444455556666666666666666666666555542 123455555555666
Q ss_pred hcCChhHHHHHHHHHHHc
Q 041822 259 KKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~ 276 (500)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666655544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.2e-06 Score=69.32 Aligned_cols=131 Identities=11% Similarity=0.004 Sum_probs=89.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc--------------cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLL--------------TLKSMSIMLSRISKFQSYEETLEAFDRMEREIF 170 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 170 (500)
.+..+...+...|++++|...|++..+..|... ....+..+..+|...|++++|+..+++....
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-- 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 445555556666666666666666665443322 1256677778888899999999999988876
Q ss_pred ccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 041822 171 VGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAME-MFYHEMVL 240 (500)
Q Consensus 171 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 240 (500)
.+.+..++..+..++...|++++|.+.|++..+..+.+...+..+..++...++.+++. ..+..+..
T Consensus 118 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 ---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp ---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678888999999999999999999999988755667788888887777776666555 44444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-06 Score=65.19 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF--RPS----VVTYNI 252 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~~ 252 (500)
..|..+...+...|++++|...|++..+..+.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34556666666677777777777766654455666666666666667777777766666655421 111 455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITT 287 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 287 (500)
+..++...|++++|.+.|++..+.. |+......
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 117 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKK 117 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 6666667777777777777666643 44443333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.5e-06 Score=61.41 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=49.6
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCC--Chhh
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKF--GSEE 180 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~ 180 (500)
...+..+...+...|++++|...+++..+..|. +...+..+...+...|++++|...|++..+. .+. +...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~ 78 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IEDEYNKDV 78 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccchHHH
Confidence 334445555555555555555555555554433 2334444445555555555555555555443 233 4445
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHHhhh
Q 041822 181 FNVLLQAFCTQ-KEMKEARSVFVKLLS 206 (500)
Q Consensus 181 ~~~ll~~~~~~-~~~~~A~~~~~~m~~ 206 (500)
+..+..++... |++++|.+.++...+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 55555555555 555555555555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=9.3e-06 Score=63.38 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=46.7
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
+...+..+...+...|++++|...|+...+..|. +...+..+..++...|++++|...|++.... .+.+...|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 80 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKAH 80 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhHHHH
Confidence 3444444555555555555555555555444333 2334444444445555555555555544443 23344445
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
..+..++...|++++|...|++..
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555555555555555444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.9e-05 Score=73.22 Aligned_cols=203 Identities=7% Similarity=-0.064 Sum_probs=142.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCcc---------------HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLT---------------LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG 172 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 172 (500)
.-...+.+.|++++|++.+..+.+..+...+ ..++..+...|...|++++|.+.+..+......-
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3456678889999999999999886544322 1346778888999999999999998876643110
Q ss_pred ccC-CChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC
Q 041822 173 IRK-FGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-----RF-APNNKTMNILLLGFKESGDVTAMEMFYHEMVLR--GF 243 (500)
Q Consensus 173 ~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~ 243 (500)
... ....+.+.+...+...|+.+.|..+++.... +. ..-..++..+...+...|++++|..+++++... +.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 000 0112334444555567889999999988763 22 223467888899999999999999999887654 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 244 ---RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV----ACLPS--LQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 244 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
.....++..++..|...|++++|...+++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112457888889999999999999999887642 21111 24566667777888999998887776644
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=62.21 Aligned_cols=98 Identities=16% Similarity=0.067 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG--FRPS----VVTYNI 252 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~----~~~~~~ 252 (500)
.++..+...+.+.|++++|+..|++..+-.|.+...|+.+..+|.+.|++++|...+++.++.. ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455666667777777777777777666445566667777777777777777777766665431 0111 124555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
+..++...|++++|++.|++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666677777777777766653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-05 Score=64.23 Aligned_cols=94 Identities=9% Similarity=-0.020 Sum_probs=43.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+..+...+.+.|++++|+..|++.... .+.+...|..+..+|.+.|++++|+..|++..+..+.+...|..+..+
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 333334444444444444444444433 233444444444444444444444444444444333344444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 041822 222 FKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~ 240 (500)
+...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 4455555555554444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-05 Score=61.59 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
.+.-+...+.+.|++++|++.|+++++.. |-+...|..+..++...|++++|++.++...+.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445555556666666666666655532 334555555556666666666666666555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=62.09 Aligned_cols=112 Identities=13% Similarity=0.017 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT----PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK 140 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 140 (500)
.....+..+...+...|++++|++.|+.+.+. .|+ ...+..+..++...|++++|...++...+..|. +..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHH
Confidence 44566667777788888888888888888875 344 566777777778888888888888887776554 345
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
.+..+..++...|++++|...|++.... .+.+...+..+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~ 141 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHH
Confidence 6666667777777777777777777665 3444444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-05 Score=65.60 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+...|++++|++.|+.+++.. +.+...+..+..++...|++++|+..+++..+..|. +...+..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 3344444555555555555555555555432 334445555555555555555555555555554433 233444444
Q ss_pred HHHhccccHHHHHHHHHHHHHH
Q 041822 147 SRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
.+|...|++++|...|++....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 4455555555555555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=6.8e-06 Score=63.31 Aligned_cols=108 Identities=7% Similarity=0.067 Sum_probs=68.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC---CCC----HH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRF---APN----NK 213 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~---~~~----~~ 213 (500)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++..+.. .++ ..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 3445555666667777777777766655 34456666677777777777777777777766421 222 56
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041822 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRID 255 (500)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 255 (500)
++..+..++...|++++|...|+...+. .|+......+..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6677777777777777777777777665 345444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-05 Score=61.37 Aligned_cols=100 Identities=8% Similarity=-0.029 Sum_probs=61.5
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
+.+...|..+...+...|++++|...|+...+..+.+...|..+..++...|+++.|...++...+.. +.+...+..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 34455566666666666666666666666665444556666666666666666666666666666543 22455666666
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.5e-05 Score=58.52 Aligned_cols=119 Identities=9% Similarity=-0.047 Sum_probs=99.5
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (500)
+.+...+..+...+...|++++|.+.|++..+..|... ....+..+...|...|++++|+..+++.... .+.+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~ 99 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-----DGGDV 99 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TSCCH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CccCH
Confidence 45778888999999999999999999999998766421 1567778888899999999999999998876 46678
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
..+..+..++...|++++|...|++..+..+.+...+..+.....
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 899999999999999999999999999755666777766655543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-05 Score=58.48 Aligned_cols=93 Identities=9% Similarity=0.019 Sum_probs=45.5
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCCCCcc-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCC---hhhHHHH
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHPSLLT-LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG---SEEFNVL 184 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l 184 (500)
+...+...|++++|.+.|+.+.+..|.... ...+..+..++...|++++|...|+++... .|.+ ..++..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~l 82 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcccHHHHHHH
Confidence 344444555555555555555554443221 123344444455555555555555555443 1222 3444555
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~ 206 (500)
..++.+.|++++|...|+.+.+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=61.56 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=37.4
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+.+.|++++|+..|++.... .|.+...|..+..++...|++++|+..|++..+..+.+...+..+..++...|++
T Consensus 27 ~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33444444444444444433 2334444444444444444444444444444433233344444444444444444
Q ss_pred HHHHHHHHHHH
Q 041822 229 TAMEMFYHEMV 239 (500)
Q Consensus 229 ~~a~~~~~~~~ 239 (500)
++|...+++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=60.88 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=58.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
.+...+.+.|++++|+..|+.+.+.. |.+...+..+..++...|++++|+..+++..+..|. +...+..+..++..
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence 34455566677777777777766642 445666666666677777777777777777666554 33455566666666
Q ss_pred cccHHHHHHHHHHHHH
Q 041822 152 FQSYEETLEAFDRMER 167 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~ 167 (500)
.|++++|+..|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6777777766666544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.3e-05 Score=57.09 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=45.5
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---HHhHHHHHH
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGS---EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---NKTMNILLL 220 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~l~~ 220 (500)
..+...|++++|...|+++.... |.+. .++..+..++.+.|++++|...|+...+..+.+ ...+..+..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555555555555555441 2222 345555555555555555555555555432333 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 041822 221 GFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~ 241 (500)
++.+.|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.12 E-value=4e-05 Score=73.59 Aligned_cols=144 Identities=11% Similarity=-0.029 Sum_probs=86.3
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
...+......+.+.|++++|...|++..+..|..... . .+... ++ .+....+|.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~-~~~~~----~~--------~~~~~~~~~ 321 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-------------S-EKESK----AS--------ESFLLAAFL 321 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-------------C-HHHHH----HH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-------------C-hHHHH----HH--------HHHHHHHHH
Confidence 4456777777888888888888888887765543220 0 00000 00 011234566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
.+..+|.+.|++++|+..|++.++..+.+...|..+..++...|++++|...|++..+.. +-+...+..+..++.+.|+
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 667777777777777777777766445566677777777777777777777777766652 1234556666666666666
Q ss_pred hhHHHH-HHHHH
Q 041822 263 FGDAMR-LFEEM 273 (500)
Q Consensus 263 ~~~a~~-~~~~m 273 (500)
.+++.+ .+..|
T Consensus 401 ~~~a~~~~~~~~ 412 (457)
T 1kt0_A 401 HNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 666553 34444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.7e-05 Score=61.58 Aligned_cols=133 Identities=11% Similarity=-0.030 Sum_probs=65.4
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHh
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--FAPN----NKT 214 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~ 214 (500)
+..+...+...|++++|...+++........ .......++..+...+...|++++|.+.+++..+- ...+ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3444455555666666666665554432100 00001135566666666677777777766665531 0011 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLR----GFR-PSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
+..+...+...|++++|...+++..+. +.. .....+..+...|...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555555556666666666655554432 100 012234445555555555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.6e-05 Score=61.01 Aligned_cols=137 Identities=11% Similarity=0.002 Sum_probs=90.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc----cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChh
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLL----TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSE 179 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 179 (500)
++..+...+...|++++|...+++..+..+... ....+..+...+...|++++|...+++........ ..+....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666666777777776666655321111 12345566677777888888888887765543110 0011244
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh---CCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLS---RFA---PNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
++..+...+...|++++|.+.+++..+ ... ....++..+...+...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 677888889999999999999988774 111 12456788888999999999999999887653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-05 Score=76.73 Aligned_cols=119 Identities=12% Similarity=-0.054 Sum_probs=89.8
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..+.+.|++++|.+.|++..+. .+.+..+|..+..+|.+.|++++|++.+++..+..+.+..+|..+..++.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3466788889999988888776 46678888889999999999999999999888766677888888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDG--YCKKGCFGDAMRLFE 271 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 271 (500)
++++|...|++..+... -+...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999888877631 133445445444 777888888888887
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00033 Score=68.93 Aligned_cols=173 Identities=8% Similarity=-0.006 Sum_probs=110.4
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC----------hHHHHHHHHHhHhhCCCCccHHHHHHHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY----------FDQAWELMSHVQRTHPSLLTLKSMSIMLSRI 149 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (500)
....++|++.++.++... |-+..+|+..-.++...|+ ++++++.++.+.+..|. ++.+|..-.-.+
T Consensus 42 ~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 334457788888877753 3445556666666655555 77778888877777554 555666655556
Q ss_pred hccc--cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc-
Q 041822 150 SKFQ--SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQK-EMKEARSVFVKLLSRFAPNNKTMNILLLGFKES- 225 (500)
Q Consensus 150 ~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~- 225 (500)
.+.| +++++++.++++.+. .+.+..+|+.-.-++.+.| .++++++.++++.+..+-|...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~-----d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred HHcccccHHHHHHHHHHHHhh-----ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 6667 567788877777776 4667777777777777777 777777777777776666777777776666553
Q ss_pred -------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 226 -------------GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 226 -------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
+.++++.+.++...... +-|...|+.+-..+.+.++
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 23455555555555442 2244455554444444444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-05 Score=76.59 Aligned_cols=120 Identities=8% Similarity=0.066 Sum_probs=95.6
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ 153 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (500)
...+...|++++|++.|+++.+.. +.+...+..+..++.+.|++++|++.+++..+..|. +...+..+..+|...|
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Confidence 345567899999999999998863 556888999999999999999999999999988665 4567888888999999
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH--HHcCCCHHHHHHHHH
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA--FCTQKEMKEARSVFV 202 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~ 202 (500)
++++|++.|++..+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKV-----KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHH-----STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998876 35566677777666 888899999999988
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00013 Score=70.03 Aligned_cols=133 Identities=10% Similarity=0.012 Sum_probs=101.4
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---------------NKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
....|..+...+.+.|++++|...|++..+-.+.+ ...|..+..++.+.|++++|...+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 45566667777777777777777777776532333 588999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHhchhC
Q 041822 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR-QLFDEMPKR 311 (500)
Q Consensus 242 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~ 311 (500)
. +.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++. ..+..|...
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 3368889999999999999999999999998865 335567888888888889888776 456666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00097 Score=65.57 Aligned_cols=175 Identities=8% Similarity=0.010 Sum_probs=139.0
Q ss_pred CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 117 RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS----------YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
..-++|.+.++.+.+..|.. ..+|+.--.++...|+ ++++++.++.+.+. .|.+..+|+.-.-
T Consensus 43 ~~~eeal~~~~~~l~~nP~~--~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y~aW~hR~w 115 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDF--ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSYGTWHHRCW 115 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCchh--HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence 34478899999999987764 4566655555556666 99999999999887 5788999999999
Q ss_pred HHHcCC--CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 041822 187 AFCTQK--EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG-DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK--- 260 (500)
Q Consensus 187 ~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--- 260 (500)
++.+.+ +++++++.++++.+..+-|..+|+.-..+..+.| .++++.+.++++++.... |...|+.....+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 999999 7799999999999877789999999998888988 889999999999887533 778888777776653
Q ss_pred -----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 261 -----------GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 261 -----------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
+.++++++.+++..... +-+...|.-+-..+.+.++.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788888888888765 3466677777776766666433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=60.25 Aligned_cols=87 Identities=8% Similarity=0.098 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHhhcCCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPH-FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 158 (500)
.|++++|+..|+++++... -+.+...+..+..++...|++++|+..|++..+..|+. ...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCHHHH
Confidence 4566666666666665410 12234455666666666666666666666666665543 34555555666666666666
Q ss_pred HHHHHHHHHH
Q 041822 159 LEAFDRMERE 168 (500)
Q Consensus 159 ~~~~~~~~~~ 168 (500)
+..|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666665554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00011 Score=68.15 Aligned_cols=124 Identities=9% Similarity=-0.032 Sum_probs=65.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhc-----------cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFV-----------GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAP 210 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 210 (500)
+..+...+.+.|++++|+..|++..+.... ...+.+..+|..+..+|.+.|++++|++.+++.++..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 444555666677777777777766542100 001223445555666666666666666666666554444
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 041822 211 NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
+...|..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666665555442 11344444444444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00015 Score=58.34 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=27.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+..+..+|.+.|++++|+..+++.... .|.+..+|..+..+|...|++++|...|+...+
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKR-----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344444444444444444444444443 233444444444444444444444444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.92 E-value=8.7e-05 Score=68.94 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=90.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhC--------------CCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTH--------------PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIF 170 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 170 (500)
.+..+...+.+.|++++|++.+++..+.. ........+..+..+|.+.|++++|+..+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 35566666777777777777777766511 01123456777778888889999999888888765
Q ss_pred ccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 041822 171 VGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEM 233 (500)
Q Consensus 171 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 233 (500)
.+.+..+|..+..+|...|++++|.+.|++..+..+.+...+..+..++...++.+++.+
T Consensus 303 ---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 ---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888889999999999999988887555677777777777777666655543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0002 Score=57.67 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=47.8
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+...|..+..+|.+.|++++|+..++..++-.+.+...|..+..++...|++++|...|+...+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44567777777777777777777777777655666777777777777777777777777777665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.89 E-value=5.2e-05 Score=69.58 Aligned_cols=147 Identities=10% Similarity=0.004 Sum_probs=73.0
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
..+......+.+.|++++|...|++..+..|... .+...|+.+++...+. ..+|..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~----------~~~~~~~~~~~~~~l~--------------~~~~~n 235 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF----------MFQLYGKYQDMALAVK--------------NPCHLN 235 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH----------HHTCCHHHHHHHHHHH--------------THHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch----------hhhhcccHHHHHHHHH--------------HHHHHH
Confidence 3455666667777888888888887776543211 1233444444432221 125666
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcC
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP-SVVTYNIRIDG-YCKKG 261 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~-~~~~g 261 (500)
+..+|.+.|++++|+..+++.++..+.+...|..+..++...|++++|...|++..+. .| +...+..+... ....+
T Consensus 236 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777655556777777777777777777777777776654 22 33344444443 23345
Q ss_pred ChhHHHHHHHHHHHc
Q 041822 262 CFGDAMRLFEEMERV 276 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~ 276 (500)
..+++.++|..|...
T Consensus 314 ~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 314 LYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhCC
Confidence 666677777776654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.2e-05 Score=59.36 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=24.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
++..+..+|...|++++|...|++..+..+.+...+..+..++...|++++|...+++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444443333334444444444444444444444444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.6e-05 Score=68.91 Aligned_cols=149 Identities=10% Similarity=0.021 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+.+.|++++|+..|+.++... |+... +...|+.+++...+. ...+..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 4446677788889999999999999988752 43331 223333444332221 12566677
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH-Hhc
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF-KES 225 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~-~~~ 225 (500)
.+|.+.|++++|+..|++.... .+.+..+|..+..+|...|++++|...|++..+..+.+...+..+.... ...
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTE-----EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 7888888888888888888776 4667788888888888888899998888888764455666666666553 334
Q ss_pred CCHHHHHHHHHHHHHC
Q 041822 226 GDVTAMEMFYHEMVLR 241 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~ 241 (500)
+..+.+...|..|...
T Consensus 313 ~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhhCC
Confidence 5567777888777655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00065 Score=52.91 Aligned_cols=111 Identities=10% Similarity=-0.021 Sum_probs=64.9
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh----cCCH
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE----SGDV 228 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~ 228 (500)
+++++|++.|++..+.+ +.... +...|...+.+++|.+.|++..+. -+...+..|...|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g-------~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-------EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-------CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCC-------CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccH
Confidence 45666666666665543 22233 555555555666666666666542 255566666666665 5666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 277 (500)
++|..+|+...+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666666654 45555556666655 566666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00067 Score=52.82 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 041822 193 EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMR 268 (500)
Q Consensus 193 ~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~ 268 (500)
+.++|.+.|++..+.-.++.. |...|...+.++.|.++|++..+.| +...+..|...|.. .+++++|++
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 345555555555542222222 4444555555555555555555553 44555555555554 455555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHhchhCC
Q 041822 269 LFEEMERVACLPSLQTITTLIHGAGL----VRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 269 ~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 312 (500)
+|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555543 33444444444444 445555555555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00037 Score=54.99 Aligned_cols=100 Identities=11% Similarity=0.004 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc----------cHHHHHHHHHHHhccccHHHHHHHHHHHHHH-H-hccc
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLL----------TLKSMSIMLSRISKFQSYEETLEAFDRMERE-I-FVGI 173 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~ 173 (500)
+......+.+.|++++|+..|+...+..|..+ +...|.....++.+.|++++|+..+++..+. + ....
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 33444445555555555555555555444321 1124455555555556666665555555443 0 0000
Q ss_pred cCCChhhH----HHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 174 RKFGSEEF----NVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 174 ~~~~~~~~----~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
.|.+...| .....++...|++++|+..|++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 12334455 555555556666666666555554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00044 Score=66.40 Aligned_cols=97 Identities=9% Similarity=0.056 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh----CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS----RFAP----NNKTMNILLLGFKESGDVTAMEMFYHEMVLR-----GFR- 244 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~~- 244 (500)
.+++.|..+|...|++++|+.++++.++ -..| ...+++.|...|...|++++|+.++++..+. |..
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444444444444444444444432 0111 1234455555555555555555554444321 211
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 245 PS-VVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 245 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|+ ..+.+.+-.++...+.+++|..+|..+++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22233444455555666666666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00055 Score=53.99 Aligned_cols=65 Identities=17% Similarity=0.014 Sum_probs=35.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhcc-------ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVG-------IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+......+.+.|++++|+..|++..+..... ..+.+...|+.+..++.+.|++++|+..+++.++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555667788888888888877664210 0000112555555555555555555555555543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00045 Score=66.32 Aligned_cols=125 Identities=10% Similarity=-0.025 Sum_probs=59.8
Q ss_pred HHcCChhHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHHcCCHhhHHHHHHHHHH-----CCCC-C-CHhHHHHH
Q 041822 363 MKSSGLEGVCKLYDRMIE---GKFVPK----TRTVVMLMKFFCVNFRVDLGLNLWGYLID-----RGFC-P-HGHALDLL 428 (500)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~---~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l 428 (500)
...|++++|..++++..+ .-+.|+ ..+++.|...|...|++++|..++++.++ .|.. | ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555555555555432 111111 34455555555556666666655555543 1211 1 12345555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVR-----RR-QVS-EASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
...|...|++++|..++++..+. |- .|+ ..+.+.+..++...+.++.++.+++.+++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555431 21 111 1222344455555555666666655555433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=5e-05 Score=56.51 Aligned_cols=89 Identities=10% Similarity=-0.032 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS-------VVTY 250 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-------~~~~ 250 (500)
...|..+...+...|++++|.+.|++..+..+.+...+..+..++.+.|++++|...+++..+. .|+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 3445566666666666666666666666544555666666666666666666666666666654 232 3334
Q ss_pred HHHHHHHHhcCChhHHHH
Q 041822 251 NIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~ 268 (500)
..+..++...|+++.|++
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444444444444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00083 Score=50.21 Aligned_cols=80 Identities=11% Similarity=-0.036 Sum_probs=62.1
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHH
Q 041822 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDR 164 (500)
Q Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 164 (500)
.|++.|+.+.+.. +.+...+..+...+...|++++|...+++..+..|. ....+..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677777777753 556778888888888888888888888888887665 345677777888888888888888888
Q ss_pred HHHH
Q 041822 165 MERE 168 (500)
Q Consensus 165 ~~~~ 168 (500)
....
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0009 Score=47.27 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=28.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
.+..+...+...|++++|...|++..+..+.+...+..+..++.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444444444444444444444433333444444444444455555555555444444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00048 Score=50.94 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC------HH
Q 041822 140 KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN------NK 213 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~------~~ 213 (500)
..+..+...+...|++++|+..|++.... .+.+...|..+..++.+.|++++|.+.|++..+..+.+ ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 45566677778888888888888888776 46677888888888888888988888888888644444 45
Q ss_pred hHHHHHHHHHhcCCHHHHH
Q 041822 214 TMNILLLGFKESGDVTAME 232 (500)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~ 232 (500)
.+..+..++...|+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 5555555555555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00029 Score=55.45 Aligned_cols=95 Identities=9% Similarity=0.155 Sum_probs=67.2
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH----------HHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM----------KEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
.+.+.+++|.+.+++..+. .|.+...|+.+..++.+.+++ ++|+..|++.++-.+.+..+|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4567788888888888777 577888888888888877664 4777777777765556777777787
Q ss_pred HHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 041822 220 LGFKESG-----------DVTAMEMFYHEMVLRGFRPSVVTYN 251 (500)
Q Consensus 220 ~~~~~~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~ 251 (500)
.+|...| ++++|.+.|++.++. .|+...|.
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 7777664 566666666666655 45444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00096 Score=47.14 Aligned_cols=76 Identities=18% Similarity=0.136 Sum_probs=34.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
.+..+...+...|++++|...|++.... .+.+..++..+..++.+.|++++|...|++..+..+.+...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3344444444555555555555554443 23344444445555555555555555555544432333444444333
Q ss_pred H
Q 041822 221 G 221 (500)
Q Consensus 221 ~ 221 (500)
+
T Consensus 86 ~ 86 (91)
T 1na3_A 86 A 86 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00089 Score=50.06 Aligned_cols=77 Identities=12% Similarity=-0.056 Sum_probs=34.3
Q ss_pred HHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 197 ARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 197 A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
|...|++..+..+.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444443333344444444444444444444444444444432 1133344444444444555555555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00045 Score=54.34 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 116 MRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS----------YEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
.+.+++|.+.++...+..|. +...+..+..++...++ +++|+..|++..+. .|.+..+|..+.
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~LG 87 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHHHH
Confidence 34456666666666666554 33445545555555544 56888888888877 467788899999
Q ss_pred HHHHcCC-----------CHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 186 QAFCTQK-----------EMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 186 ~~~~~~~-----------~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
.+|...| ++++|++.|++.++ +.|+...|...+..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~-l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence 9998764 89999999999886 34565555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00061 Score=49.55 Aligned_cols=66 Identities=12% Similarity=-0.036 Sum_probs=41.1
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
|.+...+..+...|.+.|++++|+..|++..+..+.+...|..+..++...|++++|...|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666666666654445556666666666666666666666665553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00063 Score=49.49 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
...+..+..++...|++++|++.|+.+.+.. +.+...|..+..++...|++++|.+.+++..+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555666666667777777666666642 344556666666666667776666666666543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.023 Score=51.42 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=88.3
Q ss_pred CCCHHhHHHHHHHHHc--C---CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcccc
Q 041822 100 TPTPDAFEKTLHILAR--M---RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIR 174 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 174 (500)
+.+...|...+++... . .+..+|+.+|++..+..|+... .+..+.-+|.- .... .
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~--A~A~la~a~~~-------------~~~~-----~ 250 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY--ARAEKALVDIV-------------RHSQ-----H 250 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHH-------------HHHH-----S
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHH-------------Hhcc-----C
Confidence 5677788777766542 2 3357899999999999887543 33333333320 0000 0
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
+.+...... ...+.+... .....+.+..+|..+...+...|+++.|...++++...+ |+...|..+.
T Consensus 251 ~~~~~~~~~----------l~~a~~a~~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG 317 (372)
T 3ly7_A 251 PLDEKQLAA----------LNTEIDNIV-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLG 317 (372)
T ss_dssp CCCHHHHHH----------HHHHHHHHH-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred CCchhhHHH----------HHHHHHHHH-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHH
Confidence 001000000 012222111 112345677777777666666678888888877777764 6766666667
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITT 287 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 287 (500)
..+.-.|++++|.+.|++....+ |...+|..
T Consensus 318 ~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~ 348 (372)
T 3ly7_A 318 KVYEMKGMNREAADAYLTAFNLR--PGANTLYW 348 (372)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCcChHHH
Confidence 77777788888888887777654 66665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.057 Score=48.95 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHH
Q 041822 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321 (500)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 321 (500)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5678888888888888899999999999999986 88888888888999999999999999999886 45666654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0044 Score=44.55 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=64.0
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHH-hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPD-AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
...+...|++++|++.|+.+.+.. +.+.. .+..+..++...|++++|.+.|++..+..|........
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---------- 74 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR---------- 74 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----------
Confidence 455677899999999999998863 45677 88899999999999999999999999988765432211
Q ss_pred ccHHHHHHHHHHHHHH
Q 041822 153 QSYEETLEAFDRMERE 168 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~ 168 (500)
+.+.++...|++....
T Consensus 75 ~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5666777777665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.024 Score=58.70 Aligned_cols=45 Identities=7% Similarity=0.170 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041822 328 IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 328 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555553322 14455555555555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.11 Score=41.36 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=88.3
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
......|+++.|.++.+.+. +...|..|.....+.|+++-|++.|.+..+ +..+.-.|.-.|
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~----------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg 74 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN----------DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHhC----------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhC
Confidence 34457889999988877652 566899999999999999999999998875 556666777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (500)
+.+...++-+.....| -++.....+.-.|+++++.++|.+..+ .|.... .....|..+.|.++.+
T Consensus 75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~------~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYA------VAKANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHH------HHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHH------HHHHcCcHHHHHHHHH
Confidence 8887777665555554 245555566677888888888865433 121111 1122455667777766
Q ss_pred hc
Q 041822 307 EM 308 (500)
Q Consensus 307 ~~ 308 (500)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 55
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.014 Score=54.99 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=69.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHHcCCHhhHHHHHHHHHH-----CCC-CC-CHhH
Q 041822 359 FFGLMKSSGLEGVCKLYDRMIEGK---FVPK----TRTVVMLMKFFCVNFRVDLGLNLWGYLID-----RGF-CP-HGHA 424 (500)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~~~~~~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~ 424 (500)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+...|...|++++|+.+++++++ .|. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999998887431 2233 56788888899999999999999988774 231 12 2356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 425 LDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999988764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.01 Score=55.85 Aligned_cols=86 Identities=8% Similarity=-0.084 Sum_probs=62.1
Q ss_pred cCChhHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHHcCCHhhHHHHHHHHHH-----CCC-CCC-HhHHHHHHH
Q 041822 365 SSGLEGVCKLYDRMIE---GKFVPK----TRTVVMLMKFFCVNFRVDLGLNLWGYLID-----RGF-CPH-GHALDLLVT 430 (500)
Q Consensus 365 ~g~~~~a~~~~~~~~~---~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~li~ 430 (500)
.|++++|..++++..+ .-+.|+ ..+++.+..+|...|++++|+.++++.++ .|. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4678888888877653 222233 56778888888888888888888888774 231 122 356888888
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 041822 431 GLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 431 ~~~~~g~~~~A~~~~~~m~~ 450 (500)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 89999999999998888764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.032 Score=57.73 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=101.2
Q ss_pred hhcCChHHHHH-HHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 78 AAHSNGLKALE-FFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 78 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
...+++++|.+ ++.. + ++......++..+.+.|..++|.++.+.-. .-+......|+++
T Consensus 610 ~~~~~~~~a~~~~l~~------i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN------V-EGKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLT 669 (814)
T ss_dssp HHTTCHHHHHHHTGGG------C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHH
T ss_pred HHhCCHHHHHHHHHhc------C-CchHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHH
Confidence 34677887766 4321 1 213344778888888899888887653211 1133355779999
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
+|.++.+.+ .+...|..+...+.+.|+++.|+++|.++.+ |..+...+...|+.+...++-+
T Consensus 670 ~A~~~~~~~----------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 670 LARDLLTDE----------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHTTC----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhh----------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHH
Confidence 998886544 2566899999999999999999999998864 5556666666777777666655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
.....| -++....+|.+.|++++|++++.++.
T Consensus 732 ~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 732 DAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555543 23444445666677777777665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.012 Score=55.52 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHhHhh-----CCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--hccccCCC-hhhHHHHHHH
Q 041822 117 RYFDQAWELMSHVQRT-----HPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREI--FVGIRKFG-SEEFNVLLQA 187 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~-~~~~~~ll~~ 187 (500)
|++++|..++++..+. +++.+ ...+++.+...|...|++++|+.++++..... ..|...|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554432 22221 22344445555555555555555555443211 11111111 2234555555
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 041822 188 FCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~ 205 (500)
|...|++++|+.++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 555555555555554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.04 Score=51.94 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=52.8
Q ss_pred HHHHHcCCChHHHHHHHHHhHhh-----CCCC-ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--hccccCC-Chhh
Q 041822 110 LHILARMRYFDQAWELMSHVQRT-----HPSL-LTLKSMSIMLSRISKFQSYEETLEAFDRMEREI--FVGIRKF-GSEE 180 (500)
Q Consensus 110 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~-~~~~ 180 (500)
+..+.+.|++++|+.++++..+. +++. ....+++.+...|...|++++|+..+++..... ..|...| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455666777777777666543 2222 233455666666666677777766666554321 1111112 2234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5666666666666666666666655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.023 Score=40.56 Aligned_cols=64 Identities=9% Similarity=0.179 Sum_probs=39.3
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChh-hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhH
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSE-EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTM 215 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 215 (500)
..+...|++++|...|++..+. .+.+.. .|..+..++...|++++|.+.|++..+..+.+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455666777777777766655 344555 666666677777777777777777665333333333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.22 Score=37.31 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=73.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMEL 339 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 339 (500)
.|..++..++..+..... +..-||.+|--....-+-+-..++++.+-+. .|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 466666666666666542 4455555555555555555555555444332 121 123333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCC
Q 041822 340 MDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC 419 (500)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 419 (500)
+-.+-. +....+..+..+..+|.-+...+++..+.. +..|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 322211 344455556666666666666666666433 23556666666666677777777777776666666643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.08 Score=37.45 Aligned_cols=70 Identities=9% Similarity=-0.094 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhcCC---hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc
Q 041822 67 TLVENVLGRLFAAHSN---GLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT 138 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 138 (500)
..++..+..++...++ .++|..+|+++++.+ |-+......+...+...|++++|+..++.+.+..|..+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3444455555543333 678888888888764 566777777888888888888888888888887666444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.19 Score=40.05 Aligned_cols=128 Identities=9% Similarity=0.029 Sum_probs=73.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhH
Q 041822 327 LIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLG 406 (500)
Q Consensus 327 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 406 (500)
....|+++.|.++.+++. +...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 346677777777766551 567777777777777777777777766542 33344445556666665
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 041822 407 LNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIK 484 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 484 (500)
..+-+.....| -++....++.-.|+++++.++|.+. |..|-.. -.....|..+.+.++.+.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 55555554444 2344444555567777777776554 3222111 12233555666666665553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.05 Score=38.53 Aligned_cols=66 Identities=6% Similarity=-0.041 Sum_probs=33.4
Q ss_pred CChhhHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 176 FGSEEFNVLLQAFCTQKE---MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 176 ~~~~~~~~ll~~~~~~~~---~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
.+...+..+..++...++ .++|..++++.++-.+.+......+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444432222 455555555555444445555555555555555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.85 Score=39.67 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHH
Q 041822 229 TAMEMFYHEMVLRGFRPS---VVTYNIRIDGYCK-----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV-RNIH 299 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~ 299 (500)
..|...+++.++. .|+ ...|..+...|.+ -|+.++|.+.|++..+.+-.-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4666666666665 454 4577778888877 388888888888888765211366666777777774 8888
Q ss_pred HHHHHHHhchhCCCC--CCHhhHH
Q 041822 300 QARQLFDEMPKRNLK--PDIGAYN 321 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~--~~~~~~~ 321 (500)
.+.+.+++..+.... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888888886554 5543333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.11 Score=37.57 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=13.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCC
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHP 134 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 134 (500)
.+..+..++.+.|+++.|...++++.+..|
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 344444444444444444444444444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.095 Score=40.69 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhhHHHHHHHHHHCCCCC--CHhHHHHHHHHHhcCCCHHHHH
Q 041822 368 LEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF---RVDLGLNLWGYLIDRGFCP--HGHALDLLVTGLCSRGRWEEAF 442 (500)
Q Consensus 368 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 442 (500)
...+.+.|.+..+.+. ++..+...+..++++++ +++++..+++...+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 56666666677777766 5567777777777654 23 2333334556677778888888
Q ss_pred HHHHHHHHc
Q 041822 443 ECSKQMLVR 451 (500)
Q Consensus 443 ~~~~~m~~~ 451 (500)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 887777754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.25 Score=42.88 Aligned_cols=107 Identities=10% Similarity=0.069 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHH-----cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC-CCHH
Q 041822 369 EGVCKLYDRMIEGKFVPK---TRTVVMLMKFFCV-----NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSR-GRWE 439 (500)
Q Consensus 369 ~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 439 (500)
..|...+++.++. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555566666553 455 4566667767766 388888888888888854222356666777777774 8888
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 440 EAFECSKQMLVRRRQ--VSEASYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 440 ~A~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
+|.+.+++....... |+....+. +..+++..+.+....
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 888888888877665 55443333 244555555554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.13 Score=37.23 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
..+..+..+|.+.|++++|+..+++..+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.22 E-value=3.3 Score=42.62 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=22.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+|+..|+.....++++.+.... ..++.....+.-++...|+.+.+.++++.+.+.
T Consensus 569 AyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred HhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 3444555544444555554421 112222222222233344444455555544443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.29 Score=37.93 Aligned_cols=81 Identities=10% Similarity=0.039 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC---ChHHHHHHHHHhHhhC-CCCccHHHHHHHHHHHhccccHHHHHH
Q 041822 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILARMR---YFDQAWELMSHVQRTH-PSLLTLKSMSIMLSRISKFQSYEETLE 160 (500)
Q Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (500)
.+.+-|....+.+ +++..+.-.+.-++++.+ ++++++.+++.+.+.. |. .....+-.+.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHHHHHH
Confidence 3455555555542 467777777777888877 6668888888888865 31 233445556666788888888888
Q ss_pred HHHHHHHH
Q 041822 161 AFDRMERE 168 (500)
Q Consensus 161 ~~~~~~~~ 168 (500)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888776
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.33 Score=37.24 Aligned_cols=105 Identities=7% Similarity=0.021 Sum_probs=60.5
Q ss_pred cCCChhhHHHHHHHHHcCCCH------HHHHHHHHHhhhCCCCCHHh-HHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEM------KEARSVFVKLLSRFAPNNKT-MNILLL------GFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~------~~A~~~~~~m~~~~~~~~~~-~~~l~~------~~~~~~~~~~a~~~~~~~~~ 240 (500)
.+.|.++|-..+...-+.|+. ++..++|++....+||+... |..-+. .+...++.++|+++|+.+++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 355666777777777766777 77777787777766665311 111111 11223566677777776655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041822 241 RGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL 279 (500)
Q Consensus 241 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 279 (500)
.+-+- ...|-.....-.+.|+...|.+++.+....+.+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 42222 555555555556667777777777766665533
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=1 Score=33.80 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=74.9
Q ss_pred HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC
Q 041822 114 ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE 193 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 193 (500)
.-.|..++..++..+.....+ ..-++-.+.-....-+-+-..++++.+- .-.|.. .+|+
T Consensus 18 ildG~v~qGveii~k~~~ssn----i~E~NW~ICNiiD~a~C~y~v~vLd~IG-------kiFDis----------~C~N 76 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSST----KSEYNWFICNLLESIDCRYMFQVLDKIG-------SYFDLD----------KCQN 76 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSC----HHHHTHHHHHHHHHCCHHHHHHHHHHHG-------GGSCGG----------GCSC
T ss_pred HHhhhHHHHHHHHHHHcCCCC----ccccceeeeecchhhchhHHHHHHHHHh-------hhcCcH----------hhhc
Confidence 345777777777777766432 2223334433333333344444444331 112221 2344
Q ss_pred HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 194 MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 194 ~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
.......+-.+-. +...++..+......|+-++..+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.+.
T Consensus 77 lKrVi~C~~~~n~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 77 LKSVVECGVINNT----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp THHHHHHHHHTTC----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4444444433321 445556666666677777777777666433 23556666666777777777777777777777
Q ss_pred HHcCC
Q 041822 274 ERVAC 278 (500)
Q Consensus 274 ~~~~~ 278 (500)
-+.|+
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 77664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.93 E-value=3.1 Score=39.24 Aligned_cols=55 Identities=7% Similarity=0.102 Sum_probs=34.9
Q ss_pred cccHHHHHHHHHHHHHHHhccc-cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 152 FQSYEETLEAFDRMEREIFVGI-RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
.|+++.|++.+..+.+....+. ..........++..|.+.|+|+...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3788888888877776542211 122344566777777778888777666655543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=1.3 Score=40.99 Aligned_cols=72 Identities=10% Similarity=-0.007 Sum_probs=56.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL-----RGFRPSVVTYN 251 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~ 251 (500)
+...++..+...|++++|...+..+....+-+...|..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677788888888888888888876777888888888888888888888888887654 28888766543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.77 Score=35.24 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=17.3
Q ss_pred CCHHhHHHHHHHHHcCCCh------HHHHHHHHHhHhh
Q 041822 101 PTPDAFEKTLHILARMRYF------DQAWELMSHVQRT 132 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~ 132 (500)
.|.++|-..+..+-+.|+. ++.+++|++....
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 4555555555555555555 5555555555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.86 Score=45.80 Aligned_cols=132 Identities=8% Similarity=0.028 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCC-hHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhc---cccCCC---
Q 041822 106 FEKTLHILARMRY-FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ-SYEETLEAFDRMEREIFV---GIRKFG--- 177 (500)
Q Consensus 106 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~---~~~~~~--- 177 (500)
...++..+...|+ .+.|.++|+++.+..|... ......++..+...+ +--+|.+++.+..+.... ...+.+
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 4566666766776 5889999999998766432 112223333333333 344566555554332100 001111
Q ss_pred -------hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 178 -------SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEM 238 (500)
Q Consensus 178 -------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (500)
....+.-.+.+...|+++.|+++-++...-.|-+-.+|..|..+|.+.|+++.|+-.++-+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1122333455777899999999999988766778899999999999999999999888776
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=1.7 Score=40.18 Aligned_cols=73 Identities=8% Similarity=-0.122 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV-----RRRQVSEASYRML 463 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~l 463 (500)
...++.++...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|++.|++..+ .|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445667778888888888888887653 34667888889999999999999888888754 3888887764333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.97 E-value=5.9 Score=42.53 Aligned_cols=84 Identities=10% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS----LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMI 324 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 324 (500)
-|..++..+-+.|.++.+.++-....+..-.-+ ...|..+++++...|++++|...+..+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 356666777777777777766665544321111 12466777777777888877777776665433 244566666
Q ss_pred HHHHhcCCHH
Q 041822 325 SSLIRCRDLN 334 (500)
Q Consensus 325 ~~~~~~g~~~ 334 (500)
..++..|..+
T Consensus 979 ~~lce~~~~~ 988 (1139)
T 4fhn_B 979 NQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHhCCChh
Confidence 6666655543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.00021 Score=66.11 Aligned_cols=245 Identities=9% Similarity=0.038 Sum_probs=133.3
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
.+.+|..|..+..+.+++.+|++.|-+.. |+..|..++.++.+.|.++....++....+. .-+...=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 34456666666666666666655443322 5555666666666677766666665433333 1233444566666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC--------------------CCCC
Q 041822 257 YCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN--------------------LKPD 316 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~ 316 (500)
|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.... -.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 776666655333321 1444445555555666666665555554442211 1235
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041822 317 IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKF 396 (500)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 396 (500)
+.||-.+-.+|...+.+.-|...--.+.-. ......++..|-..|.+++.+.+++...... +....+|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 678888888888888776665443333221 1112235666778888888888888766322 4557777777777
Q ss_pred HHHcCCHhhHHHHHHHHHHC-CCCC------CHhHHHHHHHHHhcCCCHHHHH
Q 041822 397 FCVNFRVDLGLNLWGYLIDR-GFCP------HGHALDLLVTGLCSRGRWEEAF 442 (500)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~g~~~~A~ 442 (500)
|++- +.++..+.++..-.+ +++- ....|..++-.|..-..++.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 7665 344333333322111 1110 2234555555566555555444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.66 E-value=2 Score=43.25 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhccccCCChhhH-HHHHHHHHcCCC-HHHHHHHHHHhhh-------CCC
Q 041822 140 KSMSIMLSRISKFQS-YEETLEAFDRMEREIFVGIRKFGSEEF-NVLLQAFCTQKE-MKEARSVFVKLLS-------RFA 209 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~-~~~A~~~~~~m~~-------~~~ 209 (500)
.....++..+...|+ .+.|..+|+++.... +.....+ ..++..+...++ --+|.+++.+..+ ..+
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~-----p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~ 323 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKD-----PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLP 323 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhC-----CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhc
Confidence 344556666666776 688999999998763 2222222 333444333332 2345555555432 122
Q ss_pred C-CH----------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 210 P-NN----------KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 210 ~-~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
+ +. ...+.=.+.+...|+++-|+.+-++.+... +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2 11 122222455667899999999999888762 335789999999999999999999999887
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.8 Score=34.11 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=55.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhh---HHHHHHHHHHCCCCC--CHhHHHHHHHHHhcCCCHH
Q 041822 365 SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDL---GLNLWGYLIDRGFCP--HGHALDLLVTGLCSRGRWE 439 (500)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 439 (500)
......+.+-|.+....| .++..+-..+..++.++.+... +..+++.+.+.+ .| .....-.+.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334455556665555444 2666666667777777765554 777777777654 22 2223335666788888888
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 041822 440 EAFECSKQMLVRRRQVSE 457 (500)
Q Consensus 440 ~A~~~~~~m~~~~~~~~~ 457 (500)
+|.+.++.+.+. .|+.
T Consensus 92 ~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHh--CCCC
Confidence 888888888754 4543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.06 E-value=0.00084 Score=62.18 Aligned_cols=247 Identities=10% Similarity=0.118 Sum_probs=174.6
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
...+.+|..|.++....+...+|++.|-++ -|+..|..++.+..+.|.+++-.+.+....+.... ...=+
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke---~~IDt 120 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE---SYVET 120 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS---TTTTH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc---cccHH
Confidence 455677888899988889888888776443 35667889999999999999999998877764211 12235
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--C--------------
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--R-------------- 207 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~-------------- 207 (500)
.++-+|++.++..+-.+.+ ..||..-...+.+-|...|.++.|.-+|..+.. +
T Consensus 121 eLi~ayAk~~rL~elEefl-----------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFI-----------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTT-----------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSS
T ss_pred HHHHHHHhhCcHHHHHHHH-----------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 6888899999876644432 456777778889999999999988888876542 1
Q ss_pred -----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 041822 208 -----FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL 282 (500)
Q Consensus 208 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 282 (500)
-.-+..||..+-.+|...+.+.-|...=-.++-. ......++..|-..|.+++.+.+++.-.... ....
T Consensus 190 VdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHm 263 (624)
T 3lvg_A 190 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHM 263 (624)
T ss_dssp TTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCH
T ss_pred HHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhH
Confidence 1347789999999999999987766554344422 1223346777888999999999998876422 3567
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhchhC-CCC------CCHhhHHHHHHHHHhcCCHHHHHH
Q 041822 283 QTITTLIHGAGLVRNIHQARQLFDEMPKR-NLK------PDIGAYNAMISSLIRCRDLNAAME 338 (500)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~a~~ 338 (500)
..|+-|.-.|++- ++++..+.++....+ +++ -....|.-++-.|.+-.++|.|..
T Consensus 264 GmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 264 GMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7788888777775 455555555444332 221 134468888888888888887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.79 E-value=3.1 Score=30.96 Aligned_cols=66 Identities=6% Similarity=0.015 Sum_probs=29.5
Q ss_pred CChhhHHHHHHHHHcCCCHHH---HHHHHHHhhhCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 176 FGSEEFNVLLQAFCTQKEMKE---ARSVFVKLLSRFAP--NNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 176 ~~~~~~~~ll~~~~~~~~~~~---A~~~~~~m~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
++..+-..+.-++++..+... ++.++..+.+...| .......|.-++.+.|+++.|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444445555544333 45555554432211 2233334444444555555555555544443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.62 E-value=3 Score=44.81 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=35.1
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhH
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQ 130 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 130 (500)
+...+...+.++.|.++..|... ++..--.+..++...|++++|.+.|++..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44455667777777777666533 33433456677788889999998887764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.20 E-value=12 Score=35.10 Aligned_cols=52 Identities=4% Similarity=0.143 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHhHhh---CC-CCccHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 041822 117 RYFDQAWELMSHVQRT---HP-SLLTLKSMSIMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
|+++.|.+.+..+.+. .. ...+...+..++..|...|+++...+.+..+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7889998888776653 22 2335677888999999999998887777665443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.66 E-value=1.7 Score=30.58 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=45.7
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++|+-.+.+- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444566667777777888999999999999999999999999998887652 22344565543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.22 E-value=12 Score=33.41 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=86.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhh----h-CCCCCHHhHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL----S-RFAPNNKTMNI 217 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~----~-~~~~~~~~~~~ 217 (500)
..+...|.+.+++++|++++..-. ..+.+.|+...|-++-.-|+ + +.++|......
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA-------------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS-------------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH-------------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 344555777788888887655432 22334455555544443333 2 56677776666
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041822 218 LLLGFKESGDVT-AMEMFYHEMV----LRG--FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290 (500)
Q Consensus 218 l~~~~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 290 (500)
++..+.....-+ .-..+.+.++ +.| ..-|......+...|.+.+++.+|...|- . |-.++...|..++.
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHH
Confidence 666666554321 1122222222 212 23466777778888888888888887773 2 32333455655554
Q ss_pred HHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 291 GAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 291 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
-+...+... ..+...-.+++ -|.-.+++..|..+++...
T Consensus 176 ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 176 EWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 333222211 11222233333 3555677777777666544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.11 E-value=23 Score=36.64 Aligned_cols=281 Identities=12% Similarity=0.017 Sum_probs=148.1
Q ss_pred HhhcCChHHHHHHHHHhhcCCC-CCCC---HHh--HHHHHHHHHcCCC-hHHHHHHHHHhHhhCCCCccHHHHHHHHHHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPH-FTPT---PDA--FEKTLHILARMRY-FDQAWELMSHVQRTHPSLLTLKSMSIMLSRI 149 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~-~~~~---~~~--~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (500)
....|...+++.++...+.... ...+ ... -..+.-.++-.|. -+++.+.+..+...........+...+...+
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 4445555678877766554311 0011 111 2223233333443 2455666666555321111112223344456
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhH--HHHHHHHHhcCC
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTM--NILLLGFKESGD 227 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~l~~~~~~~~~ 227 (500)
...|+.+-...++..+... ...+..-.-.+.-++.-.|+.+.+..+.+.+.....|....- .++.-+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~-----~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQET-----QHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 6778877777777765532 122222233444445578999999999888875322333222 234557788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHH
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI-HQARQLFD 306 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~ 306 (500)
.....++++.+.... ..+......+.-+....|+.+.+.++++.+.+.+ .|.+..-..+.-+....|+. .++..++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 988888999888752 2223322223334445788887888887766654 35554444444445555553 57777888
Q ss_pred hchhCCCCCCHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC
Q 041822 307 EMPKRNLKPDIGAYNAMISSLIRCR---------DLNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMKSSG 367 (500)
Q Consensus 307 ~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~ 367 (500)
.+.. .+|..+-...+.++...| ++....+.+...... ...++...-..+..+....|.
T Consensus 654 ~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 654 PLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 8865 345555544554554433 344444444444332 222333444444555555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.64 E-value=8.4 Score=28.85 Aligned_cols=75 Identities=9% Similarity=0.053 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 041822 383 FVPKTRTVVMLMKFFCVNFR---VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEAS 459 (500)
Q Consensus 383 ~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 459 (500)
-.|+..+--.+..++.++.+ ...+..+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+ +.|+..-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 35666666667777777754 456778888877755211233444566788889999999999888884 4566543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.35 E-value=17 Score=32.08 Aligned_cols=164 Identities=13% Similarity=0.016 Sum_probs=83.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhh----h-CCCCCHHhHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL----S-RFAPNNKTMNI 217 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~----~-~~~~~~~~~~~ 217 (500)
..+...|.+.+++++|++++..-.. .+.+.|+...|-++-..++ + +.+++......
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~-------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL-------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH-------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3455557777778877776554322 2334455555444433322 2 46666666666
Q ss_pred HHHHHHhcCCHH-HHHHHHHHH----HHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041822 218 LLLGFKESGDVT-AMEMFYHEM----VLRG--FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290 (500)
Q Consensus 218 l~~~~~~~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 290 (500)
++..+.....-+ .-.++++.+ .+.| ..-+......+...|.+.|++.+|...|-. |-.-+...+..++.
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 666655532111 112222222 2222 223677778888888888888888877741 11013444444443
Q ss_pred HHHcc---CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 291 GAGLV---RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 291 ~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
-+... |...++ +...-.+ +-.|.-.|++..|..+|+...
T Consensus 174 ~w~~~~~~~~~~e~--------------dlf~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDSTV--------------AEFFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHHH--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchH--------------HHHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 33322 222221 1222222 223456678888888777654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.58 E-value=7.6 Score=27.38 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=25.8
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.42 E-value=3.7 Score=30.71 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=44.3
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
|.-+..+-++.+...++.|++.+....+++|.+.+++..|.++|+-.+.+- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 333455566666667888899999999999999999999999988887652 23344565543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.18 E-value=10 Score=35.40 Aligned_cols=61 Identities=11% Similarity=-0.081 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEK--RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
+...+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4555666666666666666666666553 222223344455566666666666666665553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.49 E-value=12 Score=28.00 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=27.3
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
+..+-++.+...++.|++.+..+.+.+|-+.+|+..|.++|+.++.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444455555555666666666666666666666666666655543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.25 E-value=12 Score=29.27 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=64.2
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHHhhh--C-CCCCH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS-------EEFNVLLQAFCTQKEMKEARSVFVKLLS--R-FAPNN 212 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~-~~~~~ 212 (500)
..-+..+...|.++.|.-+.+.+..... .+++. .++..+.+++...|++..|...|++.++ + +.-+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~---~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSN---NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH---HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhc---CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344556677777877777776554421 12221 2567788889999999999999999764 2 22122
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.+...+. . ...... ......+...--.+..+|.+.|++++|+.+++.+..
T Consensus 101 s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred Ccccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111110 0 000000 011122444444477788888999999888877543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.20 E-value=28 Score=31.94 Aligned_cols=163 Identities=8% Similarity=-0.025 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhC---CCCccHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTH---PSLLTLKSMSIMLSRISKF-QSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
...+...|.+.|+.++..+++.....-- +...+......++..+... +..+.-.++..+..+.. ......|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-----~~~~r~f 96 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-----KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-----HHTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 3455556666666666666655544311 1112233334444444432 22222333333322211 0011122
Q ss_pred ------HHHHHHHHcCCCHHHHHHHHHHhhhC---CCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH
Q 041822 182 ------NVLLQAFCTQKEMKEARSVFVKLLSR---FAPN---NKTMNILLLGFKESGDVTAMEMFYHEMVLR--GFRPSV 247 (500)
Q Consensus 182 ------~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~ 247 (500)
..++..|...|++.+|.+++.++.+. .... ..+|-.-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 25677888888888888888887751 1111 234555566777778888777777766543 222333
Q ss_pred HHHHHH----HHHHH-hcCChhHHHHHHHHH
Q 041822 248 VTYNIR----IDGYC-KKGCFGDAMRLFEEM 273 (500)
Q Consensus 248 ~~~~~l----i~~~~-~~g~~~~a~~~~~~m 273 (500)
.....+ ...+. ..++|..|...|-+.
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 322211 12334 567777777766554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.21 E-value=14 Score=27.98 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH
Q 041822 384 VPKTRTVVMLMKFFCVNFR---VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA 458 (500)
Q Consensus 384 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 458 (500)
.|+..+--.+..++.++.+ ..++..+++.+.+.+..-.....-.+.-++.+.|++++|.+..+.+.+. .|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 5666666667777777754 4567778888777442212233335666888999999999999888854 56543
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.26 E-value=17 Score=29.50 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=38.0
Q ss_pred CCHhhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH
Q 041822 401 FRVDLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE 457 (500)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 457 (500)
+......++|..|...|+.-. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 335577777777776655433 445666666777777777777777777777666643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 500 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.08 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.46 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.36 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.92 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.78 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.71 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.62 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.54 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.11 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.1 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.92 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.68 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.36 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.25 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.92 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.98 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.01 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.79 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.85 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.71 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.99 | |
| d1khda1 | 69 | Anthranilate phosphoribosyltransferase (TrpD) {Pec | 81.62 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9e-22 Score=184.27 Aligned_cols=383 Identities=12% Similarity=0.029 Sum_probs=318.7
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
++..+.+.|++++|++.|+.+.+.. |-+...+..+..++.+.|++++|...++.+.+..|. ...++..+...|.+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhhhh
Confidence 4556678899999999999998863 557888999999999999999999999999998776 456788899999999
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
|++++|+..+...... .+.+...+..........+....+............................+....+.
T Consensus 81 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRL-----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred cccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhH
Confidence 9999999999999877 45566667777777777777777777776666545556666777777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 312 (500)
..+....... +-+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...+......+
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 233 (388)
T d1w3ba_ 156 ACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh
Confidence 8888777653 3356778888899999999999999999988765 3456788889999999999999999999988865
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 041822 313 LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVM 392 (500)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 392 (500)
..+...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|.+.++...... +.+...+..
T Consensus 234 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 310 (388)
T d1w3ba_ 234 -PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNN 310 (388)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhH
Confidence 346778888999999999999999999999887544 67788889999999999999999999987653 456788888
Q ss_pred HHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 041822 393 LMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQAN 471 (500)
Q Consensus 393 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~ 471 (500)
+...+...|++++|...+++.++.. +-+..++..+..+|.+.|++++|.+.|++..+. .|+ ...|..+..+|.+.|
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 8999999999999999999998854 235678888999999999999999999999854 454 567888888888776
Q ss_pred c
Q 041822 472 A 472 (500)
Q Consensus 472 ~ 472 (500)
|
T Consensus 388 D 388 (388)
T d1w3ba_ 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.3e-19 Score=169.34 Aligned_cols=363 Identities=12% Similarity=0.004 Sum_probs=301.9
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF 188 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 188 (500)
+...+-+.|++++|.+.++++.+..|. +..++..+...|.+.|++++|...|++..+. .|.+..+|..+..+|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~l~~~~ 77 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-----NPLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHh
Confidence 455677889999999999999998776 4567888888999999999999999999877 467888999999999
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 268 (500)
.+.|++++|...+....+..+.+..............+....+............ ................+....+..
T Consensus 78 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHH
Confidence 9999999999999999986666777777777777777777766666665555432 344555556667778888999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041822 269 LFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI 348 (500)
Q Consensus 269 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 348 (500)
.+.+..... +-+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++.....+.
T Consensus 157 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 234 (388)
T d1w3ba_ 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh
Confidence 888887654 3456778888889999999999999999988764 33677889999999999999999999999888654
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHH
Q 041822 349 GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLL 428 (500)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 428 (500)
. +...+..+...+.+.|++++|.+.|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+
T Consensus 235 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 311 (388)
T d1w3ba_ 235 N-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHH
Confidence 4 67778888999999999999999999998753 2347788889999999999999999999988754 4577888899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVRRRQV-SEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
...+.+.|++++|++.+++..+. .| +..++..+..++...|++++|...++..-+.
T Consensus 312 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 312 ANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998854 34 4567788999999999999999998876554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.4e-13 Score=121.31 Aligned_cols=222 Identities=11% Similarity=0.026 Sum_probs=110.0
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+.+.|++++|...|+++.+. .|.+..+|..+..++...|++++|...|++..+-.+-+...+..+..++...|++
T Consensus 29 ~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQ-----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 44555555555555555443 2444555555555555555555555555555543334455555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVV----------------TYNIRIDGYCKKGCFGDAMRLFEEMERVA-CLPSLQTITTLIHG 291 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~----------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~ 291 (500)
++|...++...... |+.. .....+..+...+.+.+|.+.|.+..+.. -..+..++..+...
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 55555555554431 1110 01111122233344555555555544322 12234445555555
Q ss_pred HHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 041822 292 AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGV 371 (500)
Q Consensus 292 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 371 (500)
+...|++++|...|++..... +-+..+|..+...|.+.|++++|.+.|++..+.... +...|..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHH
Confidence 555566666666655555442 123445555555555666666666665555543222 344455555555555666666
Q ss_pred HHHHHHHH
Q 041822 372 CKLYDRMI 379 (500)
Q Consensus 372 ~~~~~~~~ 379 (500)
++.|++.+
T Consensus 260 ~~~~~~al 267 (323)
T d1fcha_ 260 VEHFLEAL 267 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.4e-13 Score=120.68 Aligned_cols=272 Identities=10% Similarity=-0.032 Sum_probs=164.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
-.....+.+.|++++|...|+++.+..|-+..+|..+..++...|+++.|...+.+..+.. +-+...|..+...|...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3466778899999999999999998777889999999999999999999999999988764 236778888999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMD 341 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 341 (500)
++++|.+.+++..... |+............. ..+.......+..+...+...+|.+.|.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 9999999999987753 321110000000000 0000011111122233344555555555
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 342 EMEEKRI-GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 342 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
+..+... ..+...+..+...+...|++++|...|++..... +-+...+..+..++...|++++|.+.+++.++.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 5444321 1234455555566666666666666666655432 1235555556666666666666666666666532 12
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHcCchhHHH
Q 041822 421 HGHALDLLVTGLCSRGRWEEAFECSKQMLVR----------RRQVSEASYRMLQRYLVQANANEKLE 477 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~ 477 (500)
+..+|..+..+|.+.|++++|++.|++..+. ........|..+-.++...|+.+...
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455556666666666666666666665431 11223344555555555555554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=7.1e-09 Score=94.07 Aligned_cols=270 Identities=10% Similarity=0.029 Sum_probs=156.2
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhCCCCcc---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhhHHHHH
Q 041822 110 LHILARMRYFDQAWELMSHVQRTHPSLLT---LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEEFNVLL 185 (500)
Q Consensus 110 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ll 185 (500)
..++...|++++|.+++++..+..|.... ...+..+...|...|++++|+..|++........ ..+.....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 34445555555555555555554433221 1233444555666666666666666654432110 0011123455566
Q ss_pred HHHHcCCCHHHHHHHHHHhhh-----CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 041822 186 QAFCTQKEMKEARSVFVKLLS-----RFAP---NNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GFRPSVVTYNIR 253 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~-----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~l 253 (500)
..+...|++..+...+..... .... ....+..+...+...|+++.+...+...... +.......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 677777888888877776653 1111 1234556667777888888888887777654 222234455556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC---CHhhHHHHH
Q 041822 254 IDGYCKKGCFGDAMRLFEEMERV----ACLP--SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP---DIGAYNAMI 324 (500)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li 324 (500)
...+...+++.++...+.+.... +..+ ....+..+...+...|+++.|...+....+..... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 66677778888887777665431 1111 12234455566777788888888887766543222 233455567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 325 SSLIRCRDLNAAMELMDEMEEK----RIGHD-NVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
..+...|++++|...++..... +..|+ ...+..+...|.+.|++++|.+.+++..
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777788888888877766432 22222 2345556677777777777777777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.3e-09 Score=97.38 Aligned_cols=297 Identities=11% Similarity=-0.002 Sum_probs=186.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPN-----NKTMNILLLGFKESGDVTAMEMFYHEMVLRGF-RPS----VVTY 250 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~ 250 (500)
.......+...|++++|++++++..+..+.+ ...+..+..++...|++++|...+++..+... .++ ...+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3334555667788888888887777543333 23566677777788888888888777654310 011 2344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCC----CCCCHhh
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMER----VACL--P-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRN----LKPDIGA 319 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 319 (500)
..+...+...|++..+...+.+... .+.. + ....+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 5566677778888888887776543 1111 1 12344556667778888888888777765432 2223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHH
Q 041822 320 YNAMISSLIRCRDLNAAMELMDEMEEK----RIGH--DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP---KTRTV 390 (500)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~ 390 (500)
+......+...++...+...+.+.... +..+ ....+..+...+...|++++|...+++........ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 566666777788888888777665432 1111 12234555667778889999988888766432221 24455
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHH----CCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCC----CH
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLID----RGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVR----RRQV----SE 457 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~----~~ 457 (500)
..+..++...|++++|...++.++. .+..|+ ...+..+..+|.+.|++++|.+.+++..+. |... ..
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~ 334 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 334 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHH
Confidence 6677788888999999998888764 243343 356777888899999999999998887542 3211 12
Q ss_pred HHHHHHHHHHHHcCchhHHH
Q 041822 458 ASYRMLQRYLVQANANEKLE 477 (500)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~~~ 477 (500)
..+..++..+...+..+++.
T Consensus 335 ~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 335 EAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHhcCCChHHH
Confidence 23444555566666665554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1e-09 Score=97.89 Aligned_cols=215 Identities=9% Similarity=0.029 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR-YFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
..+++.+..++.+.+.+++|++.++.+++.. |-+...|+....++...| ++++|++.++...+..|. ...++...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~--~~~a~~~~ 118 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh--hhhHHHHH
Confidence 4456677777888899999999999999864 556677888888888776 589999999999888665 55678888
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+.+.|++++|+..++++.+. .|.+..+|..+...+.+.|++++|++.|+.+.+-.+.+...|+.+...+.+.
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~-----dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQ-----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHhhccHHHHHHHHhhhhhh-----hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHc
Confidence 88888999999999999998877 5778889999999999999999999999999886667888888877776665
Q ss_pred CC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 041822 226 GD------VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL-PSLQTITTLIHGA 292 (500)
Q Consensus 226 ~~------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~ 292 (500)
+. +++|...+....+.. +.+...|+.+...+. ....+++.+.++...+.... .+...+..+...|
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred cccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 55 467777777776653 235666666655543 34456777777766553321 2334444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.6e-09 Score=95.18 Aligned_cols=215 Identities=9% Similarity=0.027 Sum_probs=159.9
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ-SYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
...++.+...+.+.+.+++|+++++.+.+..|. ...+|.....++...| ++++|+..++...+. .|.+..+|
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~--~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-----~p~~~~a~ 115 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QPKNYQVW 115 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----HHhhhhHH
Confidence 345666777788889999999999999999776 4557777777777766 589999999998877 57788999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
+.+...+.+.|++++|+..++++.+..+.+...|..+...+.+.|++++|...++.+++... -+...|+.+...+.+.+
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHcc
Confidence 99999999999999999999999987777899999999999999999999999999988742 26777877776666655
Q ss_pred C------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC-CCHhhHHHHHHHH
Q 041822 262 C------FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK-PDIGAYNAMISSL 327 (500)
Q Consensus 262 ~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 327 (500)
. +++|++.+.+..+.. +.+...|..+...+.. ...+++.+.++...+.... .+...+..+...|
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred ccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 5 467777777777654 3356666666554443 3345666666655543222 1334444444444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=6.4e-09 Score=92.52 Aligned_cols=218 Identities=10% Similarity=-0.005 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC--------------CCHHHHHHHHHHhhhC-CCCCHHhHHHHHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ--------------KEMKEARSVFVKLLSR-FAPNNKTMNILLL 220 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~~~~~A~~~~~~m~~~-~~~~~~~~~~l~~ 220 (500)
+++..+|++.... .+.+...|..-+..+.+. +..++|..+|++..+. .+.+...|...+.
T Consensus 33 ~Rv~~vyerAl~~-----~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~ 107 (308)
T d2onda1 33 KRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455566666555 344555665544433221 2345666677776653 3344455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHH
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG-AGLVRNIH 299 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~ 299 (500)
...+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|.++|+++.+.+. .+...|...... +...|+.+
T Consensus 108 ~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~ 186 (308)
T d2onda1 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHH
Confidence 6667777777777777776553332344566667777677777777777777666542 222222222221 23345666
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR-IGHD--NVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
.|..+|+.+.+.. +.+...+...+..+.+.|+++.|..+|++..... ..|+ ...|...+.--...|+.+.+.++++
T Consensus 187 ~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666542 3345566666666666666666666666665542 2221 2345555555555666666666666
Q ss_pred HHHh
Q 041822 377 RMIE 380 (500)
Q Consensus 377 ~~~~ 380 (500)
++.+
T Consensus 266 r~~~ 269 (308)
T d2onda1 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=6e-09 Score=92.68 Aligned_cols=185 Identities=9% Similarity=0.089 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
++|..+|++..+...+.+...|...+..+.+.|+.+.|..+|+.+.+........+|...+..+.+.|+++.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44445555544433333334444444444555555555555555544322222234555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCC-CCCC
Q 041822 344 EEKRIGHDNVTYHTMFF-GLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG-FCPH 421 (500)
Q Consensus 344 ~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 421 (500)
.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...+...+......|+++.|+.+|++.++.. ..|+
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 544332 2222222221 122335556666666655543 12234555555555556666666666666655532 2222
Q ss_pred --HhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 422 --GHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 422 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
...|...+..-...|+.+.+.++++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23455555555555666666666665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=1.4e-10 Score=105.04 Aligned_cols=252 Identities=10% Similarity=-0.007 Sum_probs=156.9
Q ss_pred ChHHHHHHHHHhHhhCCCCccHHHHHH---H-------HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH
Q 041822 118 YFDQAWELMSHVQRTHPSLLTLKSMSI---M-------LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA 187 (500)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~~---l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 187 (500)
..++|+++++.+.+..|+..+ .|+. + ...+...|++++|+..++...+. .|.+...|..+..+
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~--a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~-----~pk~~~~~~~~~~~ 116 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFAT--LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSYGTWHHRCWL 116 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh-----CCCcHHHHHHhhHH
Confidence 346666666666666555322 2211 1 11234456678888888888766 46677778777777
Q ss_pred HHcCC--CHHHHHHHHHHhhhCCCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 188 FCTQK--EMKEARSVFVKLLSRFAPNNKTMNIL-LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 188 ~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
+...+ ++++|...++.+.+..+++...+... ...+...+.++.|...++.+.+... -+...|+.+...+.+.|+++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHH
Confidence 76655 47888888888887556667666543 4566667888888888887777643 36777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 265 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
+|...+....+.. |+. ......+...+..+++...+....... +++...+..+...+...|+.++|...+.+..
T Consensus 196 ~A~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENVL--LKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHHH--HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHhH--HHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7766555443321 111 112233444555566666666655543 2344455555666666677777777777666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 041822 345 EKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK 386 (500)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 386 (500)
+..+. +...+..+...+...|++++|.+.+++..+. .|+
T Consensus 270 ~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~ 308 (334)
T d1dcea1 270 PENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPM 308 (334)
T ss_dssp TTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGG
T ss_pred hhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Ccc
Confidence 55322 3445555666677777777777777777653 454
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=3.3e-10 Score=102.49 Aligned_cols=274 Identities=8% Similarity=-0.046 Sum_probs=195.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHH---HHHHHc-------CCChHHHHHHHHHhHhhCCCCccHHH
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKT---LHILAR-------MRYFDQAWELMSHVQRTHPSLLTLKS 141 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~-------~g~~~~a~~~~~~~~~~~~~~~~~~~ 141 (500)
.+..........++|+++++.++... |-+...|+.. +..+.. .|++++|+..++.+.+..|.. ...
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~--~~~ 109 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--YGT 109 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc--HHH
Confidence 33333344445689999999999753 3334444332 233333 345789999999999987764 445
Q ss_pred HHHHHHHHhcc--ccHHHHHHHHHHHHHHHhccccCCChhhHHH-HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH
Q 041822 142 MSIMLSRISKF--QSYEETLEAFDRMEREIFVGIRKFGSEEFNV-LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL 218 (500)
Q Consensus 142 ~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l 218 (500)
+.....++... +++++|...++++... .+.+...+.. ....+...+..++|+..++.+.+..+-+...|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l 184 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhh-----CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 55555445444 4689999999999887 4667777654 45677788999999999999998778899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI 298 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 298 (500)
..++.+.|++++|...+....+. .| . .......+...+..+++...+....... +++...+..+...+...++.
T Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~--~~--~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~ 258 (334)
T d1dcea1 185 SCLLPQLHPQPDSGPQGRLPENV--LL--K-ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSE 258 (334)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHH--HH--H-HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHhHHh--HH--H-HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhH
Confidence 99999999988776655444333 11 1 1223344566788888998888887754 34555666777778888999
Q ss_pred HHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 041822 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD-NVTYHTMFFGLM 363 (500)
Q Consensus 299 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 363 (500)
++|...+.+..+.+ +-+..++..+...|...|+.++|.+.|+...+.. |+ ...|+.+...+.
T Consensus 259 ~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 259 LESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence 99999999888765 2356788889999999999999999999998863 43 344555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.4e-09 Score=94.17 Aligned_cols=152 Identities=11% Similarity=0.004 Sum_probs=100.8
Q ss_pred hHHHHHHHHHhhcCCCCCC--CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHH
Q 041822 83 GLKALEFFKFTLQHPHFTP--TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160 (500)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (500)
.+.|+.-++.........+ ...++..+..++.+.|++++|++.|++..+..|+ ...++..+..+|.+.|++++|+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHhhhchHHHHHHHHHHhhh
Confidence 3455555666665432221 1235666677778888888888888888887665 34567777777888888888888
Q ss_pred HHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
.|++..+. .|.+..++..+..++...|++++|.+.|+...+..+.+......+..++.+.+..+....+......
T Consensus 93 ~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 93 AFDSVLEL-----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhHHHHH-----HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 88887776 4556777777888888888888888888887764455555555555555555555555554444444
Q ss_pred C
Q 041822 241 R 241 (500)
Q Consensus 241 ~ 241 (500)
.
T Consensus 168 ~ 168 (259)
T d1xnfa_ 168 S 168 (259)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=2e-09 Score=93.17 Aligned_cols=151 Identities=10% Similarity=-0.106 Sum_probs=95.1
Q ss_pred hHHHHHHHHHhHhhCCCC--ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHH
Q 041822 119 FDQAWELMSHVQRTHPSL--LTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKE 196 (500)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 196 (500)
.+.++.-++++....+.. .....+..+..+|.+.|++++|+..|++.... .|.+..+|+.+..++.+.|++++
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~p~~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDMPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----CCCCHHHHhhhchHHHHHHHHHH
Confidence 344555555555432211 12234555666777788888888888877766 46677778888888888888888
Q ss_pred HHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 197 ARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 197 A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|+..|+++.+-.+.+..++..+..++...|+++.|...|+...+.. +.+......+..++.+.+..+.+..+......
T Consensus 90 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 90 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 8888888776555566777777777777888888888877777653 12333333333444445555555444444444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.7e-06 Score=75.68 Aligned_cols=164 Identities=9% Similarity=-0.088 Sum_probs=76.9
Q ss_pred HHhccccHHHHHHHHHHHHHHHhcccc-CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CC---CCCHHhHHHHHH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIR-KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RF---APNNKTMNILLL 220 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~---~~~~~~~~~l~~ 220 (500)
.|...|++++|.+.|.+..+....... +.-..+|+.+..+|.+.|++++|.+.+++..+ .. .....++..+..
T Consensus 46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 355556666666666655442110000 11123566666666666666666666665543 00 011233444444
Q ss_pred HHHh-cCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CH-HHHHHH
Q 041822 221 GFKE-SGDVTAMEMFYHEMVLR----GFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP-----SL-QTITTL 288 (500)
Q Consensus 221 ~~~~-~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~-~~~~~l 288 (500)
.|.. .|+++.|...+.+..+. +..+ -..++..+...|...|++++|++.|++........ .. ..+...
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence 4432 46666666666554332 1111 12334555556666666666666666655432110 00 112223
Q ss_pred HHHHHccCCHHHHHHHHHhchhC
Q 041822 289 IHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+..+...|+++.|.+.+++..+.
T Consensus 206 ~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 206 GLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 33344455555555555555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=2.2e-06 Score=74.89 Aligned_cols=205 Identities=8% Similarity=-0.048 Sum_probs=133.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCC---C-CccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhh
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHP---S-LLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEE 180 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~ 180 (500)
|......|...|++++|.+.|++..+... + .....++..+..+|.+.|++++|...+++........ .......+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 34445667788888888888888776321 1 1123467777888888999999999888765542110 01111345
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhhh-----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H-
Q 041822 181 FNVLLQAFC-TQKEMKEARSVFVKLLS-----RFAP-NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS-----V- 247 (500)
Q Consensus 181 ~~~ll~~~~-~~~~~~~A~~~~~~m~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~- 247 (500)
+..+...|. ..|++++|.+.|++..+ +.++ -..++..+...+.+.|++++|...|++......... .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 666777774 46999999999998864 1111 235678889999999999999999999887632211 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHc--cCCHHHHHHHHHhchh
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACL-PS---LQTITTLIHGAGL--VRNIHQARQLFDEMPK 310 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~---~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~ 310 (500)
..+...+..+...|+++.|.+.+++..+.... ++ ......++.++.. .+.+++|+..|+++.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 22344555677889999999999998775411 11 2234455555544 2347777777766554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.6e-06 Score=70.45 Aligned_cols=122 Identities=12% Similarity=0.026 Sum_probs=88.1
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.+...|+++.|++.|+++ .+++..+|..+..+|...|++++|++.|++.++-.+.+...|..+..++.+.|+
T Consensus 14 ~~~~~~d~~~Al~~~~~i--------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV--------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 356778888888877654 355677777888888888888888888888887556677788888888888888
Q ss_pred HHHHHHHHHHHHHCC------------CC--CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 228 VTAMEMFYHEMVLRG------------FR--PS-VVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g------------~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
+++|...|++..... .. ++ ..++..+..++.+.|++++|.+.|....+..
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888888887776431 00 11 2445556677778888888888887776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.9e-06 Score=63.51 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=50.6
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHH
Q 041822 110 LHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFC 189 (500)
Q Consensus 110 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 189 (500)
...+.+.|++++|+..|++..+..|. +...+..+..+|...|++++|+..+++..+. .|.+...|..+..++.
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccccccccccchhhhhHHHh-----ccchhhHHHHHHHHHH
Confidence 34445555555555555555555433 3334455555555555555555555555544 3445555555555555
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHh
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKT 214 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~ 214 (500)
..|++++|+..|++..+..|-+...
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~~~ 107 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNPQL 107 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHH
Confidence 5555555555555555433333333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=4e-06 Score=67.96 Aligned_cols=83 Identities=10% Similarity=0.032 Sum_probs=43.4
Q ss_pred HHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 041822 292 AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGV 371 (500)
Q Consensus 292 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 371 (500)
+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++..+.... +...|..+..+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence 445555555555555432 234445555555555555555555555555554332 444555555555555555555
Q ss_pred HHHHHHHH
Q 041822 372 CKLYDRMI 379 (500)
Q Consensus 372 ~~~~~~~~ 379 (500)
++.|++..
T Consensus 90 ~~~~~kAl 97 (192)
T d1hh8a_ 90 IKDLKEAL 97 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=0.00021 Score=60.86 Aligned_cols=113 Identities=12% Similarity=-0.006 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHh
Q 041822 333 LNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK----SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV----NFRVD 404 (500)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~ 404 (500)
...+...+......+ +...+..+...|.. ..+...+...++...+.| +......+...+.. ..+.+
T Consensus 126 ~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 444444444444431 44444555555543 234445555555555433 33333333333333 35677
Q ss_pred hHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCC
Q 041822 405 LGLNLWGYLIDRGFCPHGHALDLLVTGLCS----RGRWEEAFECSKQMLVRRRQ 454 (500)
Q Consensus 405 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~ 454 (500)
.|...|....+.| +...+..|...|.+ ..+.++|.++|++..+.|..
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 7777777776665 23344455555543 33666777777777666643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.48 E-value=0.00026 Score=60.24 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE----SGDVTAMEMFYHEMVLRGFRPSVVTYNIR 253 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 253 (500)
+..+..|...+.+.++.++|++.|++..+. -+...+..|...|.. ..+...+..++....+.+ +......+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 345556666666777777777777777651 155666666666655 456677777777766664 33444444
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHhchhCCCCCCHhhHHHHHH
Q 041822 254 IDGYCK----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAG----LVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325 (500)
Q Consensus 254 i~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 325 (500)
...+.. .++.+.|...++...+.|. ......+...+. .......+...+......+ +...+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhh
Confidence 444332 4566777777777776652 122222222222 2334566666666655543 4556666666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041822 326 SLIR----CRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK----SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFF 397 (500)
Q Consensus 326 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 397 (500)
.|.. ..+...+...++...+.| +......+...|.. ..++++|...|++..+.| ++..+..|...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 6664 345667777777766654 45555555555554 457888888888887765 344455555555
Q ss_pred HH----cCCHhhHHHHHHHHHHCCC
Q 041822 398 CV----NFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 398 ~~----~~~~~~a~~~~~~~~~~~~ 418 (500)
.+ ..+.+.|.+.|++..+.|.
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcC
Confidence 43 2367788888888877663
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=4e-06 Score=65.66 Aligned_cols=88 Identities=11% Similarity=-0.036 Sum_probs=42.9
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
|.+.|++++|+..|++..+. .|.+...|..+..+|...|++++|...|+..++-.+.+..+|..+..++...|++
T Consensus 20 ~~~~~~y~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHhhhcccc-----chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34445555555555444444 2344444555555555555555555555555443334444555555555555555
Q ss_pred HHHHHHHHHHHHC
Q 041822 229 TAMEMFYHEMVLR 241 (500)
Q Consensus 229 ~~a~~~~~~~~~~ 241 (500)
++|...+++..+.
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5555555554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=4.6e-06 Score=65.33 Aligned_cols=120 Identities=11% Similarity=0.021 Sum_probs=83.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
.....|.+.|++++|+..|++..+-.+.+...|..+..++...|+++.|...|+..++.. +-+...|..+..+|...|+
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 344567788888888888888887566788888888888888888888888888887764 3356778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHccCCHHHHHHH
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHG--AGLVRNIHQARQL 304 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~ 304 (500)
+++|.+.+++..... +-+...+..+..+ ....+.++++...
T Consensus 94 ~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888887764 2233333333322 2333445555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=0.00037 Score=60.77 Aligned_cols=130 Identities=12% Similarity=0.106 Sum_probs=67.5
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+...|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+.- +..+|..+...+
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-------------d~~rl~~~~v~l~~~~~avd~~~k~~-----~~~~~k~~~~~l 79 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-------------NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFAC 79 (336)
T ss_dssp -----------CTTTHHHHHHHTT-------------CHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-------------CHHHHHHHHHhhccHHHHHHHHHHcC-----CHHHHHHHHHHH
Confidence 345555556666666666665431 35666666666666666666655442 555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 296 (500)
.+......+. +...+...+......++..|-..|.+++...+++...... ..+...++-++..|++.+
T Consensus 80 ~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 80 VDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 6655543321 1222223344445566666666677777666666654321 345555666666666543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=6e-06 Score=60.68 Aligned_cols=88 Identities=8% Similarity=0.023 Sum_probs=46.2
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+.+.|++++|+..|++..+. .|.+...|..+..+|...|++++|+..++...+-.+.+...|..+..++...|++
T Consensus 13 ~~~~g~~~eAi~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhc-----CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44455555555555555544 3444555555555555555555555555555543344555555555555555555
Q ss_pred HHHHHHHHHHHHC
Q 041822 229 TAMEMFYHEMVLR 241 (500)
Q Consensus 229 ~~a~~~~~~~~~~ 241 (500)
++|...|+...+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=0.00042 Score=60.45 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=152.3
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhh
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEE 180 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 180 (500)
||..-...+...|-+.|.++.|..++..+.. +..++..+.+.++++.|.+.+.+.. +..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~~----------~~~~ 71 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKAN----------STRT 71 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHHT----------CHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHcC----------CHHH
Confidence 4555566788888889999999998876542 4567777888888888888766431 5668
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 260 (500)
|..+...+.+......|.-+ ......+......++..|-..|.++....+++..... -..+...++.++..|++.
T Consensus 72 ~k~~~~~l~~~~e~~la~i~----~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 72 WKEVCFACVDGKEFRLAQMC----GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHT----TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcHHHHHHHH----HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 88888888887776554221 1123346666678889999999999999888876543 245777888888888875
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM 340 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (500)
+ .++.++.+... + +..-..-++..|.+.+-++++.-++..+.+.. .....+ +.+..+..++....
T Consensus 147 ~-~~kl~e~l~~~---s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~-----~A~~~~---i~~~~~~~~~~~f~ 211 (336)
T d1b89a_ 147 K-PQKMREHLELF---W---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD-----NAIITM---MNHPTDAWKEGQFK 211 (336)
T ss_dssp C-HHHHHHHHHHH---S---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH-----HHHHHH---HHSTTTTCCHHHHH
T ss_pred C-hHHHHHHHHhc---c---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHH-----HHHHHH---HHcchhhhhHHHHH
Confidence 4 33433333322 1 11112233444555554544444444433210 011111 11111111111111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
+-..+. .|+..|-..+..|... +.+-...++..+... .|. ..++..+.+.+++......++...+.+
T Consensus 212 e~~~k~---~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n--- 278 (336)
T d1b89a_ 212 DIITKV---ANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN--- 278 (336)
T ss_dssp HHHHHC---SSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---
T ss_pred HHHHcc---CChHHHHHHHHHHHHc-CHHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---
Confidence 111221 1333344444444432 233333333333221 111 234455566677777777777765555
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHH
Q 041822 421 HGHALDLLVTGLCSRGRWEEAFECS 445 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~ 445 (500)
+..+.+++...|...++++.-.+.+
T Consensus 279 ~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3468888888999888875544433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=7.3e-07 Score=73.21 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=44.8
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhh
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEE 180 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 180 (500)
|+...+......+.+.|++++|+..|++..+..|. +...+..+..+|.+.|++++|+..|++..+. .|-+..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~--~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-----~p~~~~a 74 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKA 74 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-----CCCcHHH
Confidence 34444444444455555555555555554444333 2334444444444444444444444444332 2333444
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
|..+..+|.+.|++++|+..|++..
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=7.6e-06 Score=66.84 Aligned_cols=92 Identities=10% Similarity=-0.038 Sum_probs=46.0
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
......|.+.|++++|+..|++.... .|.+...|+.+..+|.+.|++++|+..|+..++-.|-+..+|..+..++
T Consensus 8 ~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 8 KEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33344445555555555555554444 2444555555555555555555555555555543333444555555555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 041822 223 KESGDVTAMEMFYHEMV 239 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~ 239 (500)
.+.|++++|...|+...
T Consensus 83 ~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 83 LEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=4.6e-06 Score=60.77 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=45.7
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.+.+.|++++|...|++.... .|.+..+|..+..++.+.|++++|+..|++..+-.|.+..+|..+..+|...|+
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhccc-----ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 344555555555555555544 244455555555555555555555555555554444455555555555555555
Q ss_pred HHHHHHHHHH
Q 041822 228 VTAMEMFYHE 237 (500)
Q Consensus 228 ~~~a~~~~~~ 237 (500)
+++|.+.+++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.23 E-value=6.9e-06 Score=59.81 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=77.2
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
+...+.+.|++.+|+..|+.+.+.. |-+...|..+..++.+.|++++|+..++...+..|. ...++..+...|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccc--cccchHHHHHHHHHC
Confidence 3556778999999999999999864 557889999999999999999999999999998776 556888899999999
Q ss_pred ccHHHHHHHHHHH
Q 041822 153 QSYEETLEAFDRM 165 (500)
Q Consensus 153 g~~~~a~~~~~~~ 165 (500)
|++++|++.|++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=8.4e-06 Score=60.14 Aligned_cols=91 Identities=7% Similarity=0.055 Sum_probs=37.4
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH---HHHHHHHHHhhhCCC-CC-HHhHHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM---KEARSVFVKLLSRFA-PN-NKTMNILL 219 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~m~~~~~-~~-~~~~~~l~ 219 (500)
+++.+...+++++|.+.|++.... .|.+..++..+..++.+.++. ++|+.+|+++.+..+ |+ ..++..+.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~-----~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 344444444444444444444443 233444444444444433322 234444444433111 11 12334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 041822 220 LGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~ 240 (500)
.+|.+.|++++|.+.|+.+++
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=3.9e-05 Score=56.42 Aligned_cols=100 Identities=8% Similarity=0.042 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV---TAMEMFYHEMVLRGFRPS-VVTYNIRIDGY 257 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 257 (500)
..+++.+...+++++|++.|+..++..+.+..++..+..++.+.++. ++|..+++++.+....|+ ..+|..+..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45677777888889999999988876677888888888888875554 468888888876643333 23667788888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQ 283 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~ 283 (500)
.+.|++++|++.|+++.+.. |+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~--P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE--PQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHhhhHHHHHHHHHHHHhC--cCCH
Confidence 88899999999999888864 5533
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=0.0001 Score=58.02 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=28.3
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+..+|.+.|++++|+..++..... .|.++.+|..+..+|...|++++|...|+...+
T Consensus 68 la~~y~k~~~~~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 68 LAMCHLKLQAFSAAIESCNKALEL-----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccccchhhhhhhc-----cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444555555555555554444 234444555555555555555555555555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.05 E-value=5.7e-05 Score=59.89 Aligned_cols=123 Identities=11% Similarity=-0.004 Sum_probs=77.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA 187 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 187 (500)
.........|++++|.+.|.......+...-. .......+...-..+... ....+..+...
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~-----------~~~~~~w~~~~r~~l~~~--------~~~a~~~la~~ 76 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLD-----------DLRDFQFVEPFATALVED--------KVLAHTAKAEA 76 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG-----------GGTTSTTHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccc-----------cCcchHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 34455667777777777777777654332210 000101111111112111 33456777888
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 041822 188 FCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL-----RGFRPSVVT 249 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 249 (500)
+.+.|++++|+..++++.+..+-+...|..++.++.+.|+..+|.+.|+++.+ .|+.|+..+
T Consensus 77 ~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 77 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88888888888888888876677888888888888888888888888877643 377777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=0.0002 Score=56.22 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC-------------HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCC
Q 041822 70 ENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT-------------PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSL 136 (500)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 136 (500)
..-.+..+.+.|++++|+..|..++......+. ..+|+.+..+|.+.|++++|+..++...+..|.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 344456778899999999999988864211111 245667888899999999999999999999776
Q ss_pred ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCC
Q 041822 137 LTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQK 192 (500)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 192 (500)
+..++..+..+|...|++++|+..|++..+. .|.+..+...+-.+..+.+
T Consensus 95 -~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 95 -NEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHH
Confidence 5567888999999999999999999999887 3556666666555544333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.92 E-value=0.00033 Score=54.78 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+|+.+..+|.+.|++++|+..++..++..+.+..+|..+..++...|++++|...|+.+.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555555666666666666655544555555666666666666666666666665554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=9.8e-05 Score=54.91 Aligned_cols=92 Identities=10% Similarity=0.072 Sum_probs=47.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc-----HHHHHHHH
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT-----LKSMSIML 146 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~ 146 (500)
-+...+...|++++|++.|..+++.. |.+...+..+..++.+.|++++|++.++++.+..|.... ..++..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34455555666666666666666542 344555556666666666666666666665553322211 11233333
Q ss_pred HHHhccccHHHHHHHHHHH
Q 041822 147 SRISKFQSYEETLEAFDRM 165 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~ 165 (500)
..+...+++++|+..|++.
T Consensus 87 ~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 4444444555555544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00011 Score=54.58 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR-PS-----VVTYNIRI 254 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~-----~~~~~~li 254 (500)
+..+...+.+.|++++|+..|++.++-.+.+..++..+..+|.+.|+++.|...++++++.... +. ..+|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3445566666777777777777766645556667777777777777777777777666543100 00 13455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 041822 255 DGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
..+...+++++|++.|++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 6666667777777777665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=2e-05 Score=74.23 Aligned_cols=115 Identities=10% Similarity=-0.091 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHH
Q 041822 246 SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 325 (500)
+...+..+...+.+.|+.++|...+....+.. ...++..+...+...|++++|...|.+..+.. +-+...|+.|..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 44556666777777788888877776655432 12456667777777888888888888877764 335567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 041822 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKS 365 (500)
Q Consensus 326 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (500)
.|...|+..+|...|.+...... |-...+..|...+.+.
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Confidence 88888888888888877776543 3556666666665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.78 E-value=0.00042 Score=53.16 Aligned_cols=62 Identities=15% Similarity=-0.060 Sum_probs=35.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+|+.+..+|.+.|++++|++.++..++..|.+..+|..+..++...|+++.|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455555555555555555555555544455555555555555555555555555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00041 Score=54.75 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=69.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
.........|++++|.+.|.+.++-.+-+... . ...+.+ +...-..+... ....+..+...+.+.|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------~-~~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLD------D-LRDFQF--VEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------G-GTTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccc------c-CcchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 33456677788888888888877521111100 0 000111 11111112211 23456667777777777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh-----CCCCCCHh
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK-----RNLKPDIG 318 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 318 (500)
+++|+..++++.+.. +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|+..
T Consensus 83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 777777777777654 44666777777777777777777777776533 46666544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.00014 Score=57.16 Aligned_cols=82 Identities=7% Similarity=-0.115 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
....|..+..++.+.|++++|+..++..++-.+.+..+|..+..++...|+++.|...|+...+.. +.+......+..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344566667777777777777777777776556677777777777777777777777777777653 2244455555444
Q ss_pred HHh
Q 041822 257 YCK 259 (500)
Q Consensus 257 ~~~ 259 (500)
..+
T Consensus 155 ~~~ 157 (169)
T d1ihga1 155 KQK 157 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.71 E-value=0.0011 Score=50.68 Aligned_cols=119 Identities=15% Similarity=0.045 Sum_probs=70.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCC---CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFT---PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR 148 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (500)
--+..+.+.|++.+|+..|..++...... .+..... .... .....+..+..+
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhh--------HHHHHHhhHHHH
Confidence 34456667889999999988877632111 1111000 0000 011244556666
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
|.+.|++++|+..+++.... .|.++.+|..+..++...|++++|...|+...+-.|-|..+...+-.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~-----~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKI-----DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccc-----cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 77777777777777776665 45667777777777777777777777777777644445555544433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=0.00015 Score=55.15 Aligned_cols=73 Identities=7% Similarity=0.084 Sum_probs=51.7
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC----------CCHHHHHHHHHHhhhCCCCCHHhHHHH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ----------KEMKEARSVFVKLLSRFAPNNKTMNIL 218 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------~~~~~A~~~~~~m~~~~~~~~~~~~~l 218 (500)
|-+.+.+++|+..|+...+. .|.+..++..+..++... +.+++|+..|++..+-.|.+..+|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~-----~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh-----CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence 44567788888888888776 577778888887777643 344677777777776556677777777
Q ss_pred HHHHHhcC
Q 041822 219 LLGFKESG 226 (500)
Q Consensus 219 ~~~~~~~~ 226 (500)
..+|...|
T Consensus 82 G~~y~~~g 89 (145)
T d1zu2a1 82 GNAYTSFA 89 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 77776544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=0.00065 Score=53.11 Aligned_cols=84 Identities=8% Similarity=-0.027 Sum_probs=63.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041822 211 NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290 (500)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 290 (500)
+...|..+..++.+.|++++|...++..++.. +.+...|..+..+|...|++++|++.|++..+.. +.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567778888899999999999999988774 3467788888899999999999999999888865 234555555555
Q ss_pred HHHccC
Q 041822 291 GAGLVR 296 (500)
Q Consensus 291 ~~~~~~ 296 (500)
+..+..
T Consensus 154 ~~~~l~ 159 (169)
T d1ihga1 154 VKQKIK 159 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.001 Score=51.87 Aligned_cols=60 Identities=12% Similarity=-0.026 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|+.+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++++|...|++..+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 22344444444444444444444444444444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.54 E-value=5.1e-05 Score=64.34 Aligned_cols=122 Identities=8% Similarity=0.035 Sum_probs=67.1
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
.+.|++++|+..+++..+. .|.+...+..+...++..|++++|.+.|+...+..+-+...+..+...+...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~~-----~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence 4567777777777777666 46677777777777777777777777777776543334444444444333222222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
++..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 21111000000011122233334445566677777777777776653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.54 E-value=0.00031 Score=53.30 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh----------ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 117 RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS----------KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
+.+++|+..|+...+..|+.. .++..+..++. ..+.+++|+..|++..+. .|.+..+|..+..
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~--~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-----~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDA--DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcch--HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-----cchhhHHHhhHHH
Confidence 335555555555555544422 23333333332 235567888888888776 5778889998888
Q ss_pred HHHcCCC-----------HHHHHHHHHHhhh
Q 041822 187 AFCTQKE-----------MKEARSVFVKLLS 206 (500)
Q Consensus 187 ~~~~~~~-----------~~~A~~~~~~m~~ 206 (500)
+|...|+ +++|.+.|++..+
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 8876543 3555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.41 E-value=0.00014 Score=61.50 Aligned_cols=53 Identities=6% Similarity=0.087 Sum_probs=33.6
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
.+.|++++|+..+++.++..|.|...+..+...++..|++++|...++...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44566666666666666655566666666666666666666666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00029 Score=66.06 Aligned_cols=112 Identities=5% Similarity=-0.101 Sum_probs=44.1
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
...+..+...+.+.|+.++|...++...... ...++..+...+...|++++|...|++..+. .|.+..+|+
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-----~P~~~~~~~ 190 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-----VPSNGQPYN 190 (497)
T ss_dssp -----------------------CCHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTBSHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCchHHHH
Confidence 3344444444555555555554444433321 1123444444555555555555555555544 344455555
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
.+...+...|+..+|...|.+...-.+|...++..|...+.
T Consensus 191 ~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 191 QLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 55555555555555555555555433445555555554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.11 E-value=0.0049 Score=47.05 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=51.9
Q ss_pred hHHHH--HHHHHcCCCHHHHHHHHHHhhh--CCCCC----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 041822 180 EFNVL--LQAFCTQKEMKEARSVFVKLLS--RFAPN----------NKTMNILLLGFKESGDVTAMEMFYHEMVLR---- 241 (500)
Q Consensus 180 ~~~~l--l~~~~~~~~~~~A~~~~~~m~~--~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 241 (500)
+|..+ ...+.+.|++++|+..|++.++ ...|+ ..+|+.+..+|.+.|+++.|...+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 3445566777777777777664 11111 245666666666666666666666655432
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 242 -GFRPS-----VVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 242 -g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
...++ ...++.+..+|...|++++|++.|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1234455566666666666666666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.10 E-value=0.0018 Score=49.64 Aligned_cols=95 Identities=12% Similarity=0.011 Sum_probs=45.0
Q ss_pred HHHHcCCChHHHHHHHHHhHhhCCCCcc----------HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccC----
Q 041822 111 HILARMRYFDQAWELMSHVQRTHPSLLT----------LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRK---- 175 (500)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~---- 175 (500)
......|++++|++.|++..+..+..++ ...+..+..+|...|++++|...+++........ ...
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3344556666666666666554333221 1234445555556666666665555544321000 000
Q ss_pred -CChhhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 176 -FGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 176 -~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
....+++.+..+|...|++++|+..|++..
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 011234445555555555555555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0037 Score=43.03 Aligned_cols=65 Identities=5% Similarity=-0.038 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCC-----CccHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPS-----LLTLKSMSIMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
..+-.+...+.+.|++++|+..|++..+..|. .....++..+..++.+.|++++|++.+++..+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 33334555555555555555555555443111 111233444445555555555555555555444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0082 Score=41.17 Aligned_cols=78 Identities=15% Similarity=0.004 Sum_probs=41.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccc--cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGI--RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL 218 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l 218 (500)
.+..+...+.+.|++++|...|++..+...... ......+++.+..++.+.|++++|.+.++++++-.|-+..+++.+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 334455556666677777666666654432110 001134556666666666666666666666665334444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.36 E-value=0.082 Score=38.52 Aligned_cols=110 Identities=10% Similarity=-0.012 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh----cCCHH
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE----SGDVT 229 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~~ 229 (500)
++++|.+.|++..+.+ +...+..|.. ....+.++|.+.+++..+. -+...+..|...|.. ..+.+
T Consensus 8 d~~~A~~~~~kaa~~g-------~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~ 76 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-------EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR 76 (133)
T ss_dssp HHHHHHHHHHHHHHTT-------CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCC-------Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhH
Confidence 4556666666554442 2223332321 2233455555555554431 133334444433332 23344
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 277 (500)
.|.++|+...+.| +......|...|.. ..+.++|.++|++..+.|
T Consensus 77 ~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 77 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555555555444 23333333333332 234444555555444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.25 E-value=0.097 Score=38.10 Aligned_cols=15 Identities=7% Similarity=0.233 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHcC
Q 041822 263 FGDAMRLFEEMERVA 277 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~ 277 (500)
+++|+++|++..+.|
T Consensus 9 ~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 9 LKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 344444444444433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.92 E-value=0.15 Score=35.73 Aligned_cols=139 Identities=10% Similarity=0.041 Sum_probs=73.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 041822 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAME 338 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 338 (500)
-.|..++..+++.+...+ .+..-||.+|--....-+-+...++++.+-+. .|. ..++++.....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence 346666666666666654 24555565555555555555555555544332 111 12222222222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 339 LMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
.+-.+-. +...++..+..+.++|.-+...++++.+.+.+ .|++.....+..+|-+.|+..++.+++.++-+.|+
T Consensus 78 C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 2221111 33444555666666666666666666655533 55666666666677777777777777766666664
Q ss_pred C
Q 041822 419 C 419 (500)
Q Consensus 419 ~ 419 (500)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.98 E-value=0.63 Score=32.61 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCC
Q 041822 250 YNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL 313 (500)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 313 (500)
++..++...+.|+-++-.++++.+.+.+ ++++...-.+..+|.+.|...++.+++.+.-+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3334444444555555555555544422 34444444455555555555555555555555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.01 E-value=0.76 Score=32.30 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHc---CCHhhHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH
Q 041822 384 VPKTRTVVMLMKFFCVN---FRVDLGLNLWGYLIDRGFCPHG-HALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA 458 (500)
Q Consensus 384 ~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 458 (500)
.|...|--....++.++ .++++|..+++.+.+.+ +.+. ..+-.+.-+|.+.|++++|.+.++.+.+. .|+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 34444544555566655 34567788888777643 2222 34445667788888888888888888754 45544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.79 E-value=0.59 Score=30.96 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=44.5
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++|+-.+.+. .++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 344556666666677888899999999999999999999999988877542 22344554443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.89 E-value=2.6 Score=29.46 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=9.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
.|.-+|.+.|++++|.+.++.++
T Consensus 78 ~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 78 YLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333444444444444444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.85 E-value=8.5 Score=33.97 Aligned_cols=338 Identities=9% Similarity=-0.016 Sum_probs=175.7
Q ss_pred HHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS 154 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (500)
..+.+.+++...+.++ . ..+.+...-...+.+....|+.++|...+..+-..+...+. ....+...+...|.
T Consensus 80 ~~L~~~~~w~~~~~~~----~--~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~~~ 151 (450)
T d1qsaa1 80 NELARREDWRGLLAFS----P--EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGK 151 (450)
T ss_dssp HHHHHTTCHHHHHHHC----C--SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTC
T ss_pred HHHHhccCHHHHHHhc----c--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCC
Confidence 3445556665544332 1 22455665566777777888888888777776655433332 33334443333322
Q ss_pred HH--HHHHHHHHHHHHHhc--------cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 155 YE--ETLEAFDRMEREIFV--------GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 155 ~~--~a~~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
.. ....-++.+...+.. ...+.........+...... ..+...... .+.+......+..++.+
T Consensus 152 lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~~----~~~~~~~~~~~~~~l~r 224 (450)
T d1qsaa1 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFART----TGATDFTRQMAAVAFAS 224 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHH----SCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHhc----CCCChhhhHHHHHHHHH
Confidence 21 111111111111000 00011112222333322221 111111111 22333333333333333
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 041822 225 --SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG----YCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI 298 (500)
Q Consensus 225 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 298 (500)
..+.+.+...+........ .+..-+..+-.. ....+..+.+..++......+ .+.......+......+++
T Consensus 225 la~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~ 301 (450)
T d1qsaa1 225 VARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDR 301 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCH
T ss_pred HhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCCh
Confidence 2466777777777665422 222223222222 233566777888887776655 3445555556666777899
Q ss_pred HHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041822 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 299 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
..+...+..|.... .......--+..++...|+.+.|...|...... ++ |..++.+- +.|..-. +
T Consensus 302 ~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~-------~ 366 (450)
T d1qsaa1 302 RGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYE-------L 366 (450)
T ss_dssp HHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCC-------C
T ss_pred HHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCC-------C
Confidence 99999888886542 223445566778888899999999999888653 22 33333222 2232100 0
Q ss_pred HhCCC--CCC-HHH---HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 379 IEGKF--VPK-TRT---VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 379 ~~~~~--~p~-~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
....+ .+. ... -..-+..+...|....|...|..+.+.. +......+.....+.|.++.|+....+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00000 000 000 1123455678899999999999887642 4445557778888999999999887665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.71 E-value=3.4 Score=27.24 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=26.5
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
+..+-++.+....+.|++.+..+.+.+|-+.+++.-|.++|+.++.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444555555555556666666666666666666666666555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.99 E-value=12 Score=32.92 Aligned_cols=382 Identities=9% Similarity=-0.043 Sum_probs=180.9
Q ss_pred CCCCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHH
Q 041822 61 TTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK 140 (500)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 140 (500)
..|+.+-..+..|... .......+...+++. .++.|.........+..+++.++++.....+ ...| .+..
T Consensus 34 dypL~pYl~~~~l~~~-~~~~~~~~i~~Fl~~---~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p--~~~~ 103 (450)
T d1qsaa1 34 DYPLYPYLEYRQITDD-LMNQPAVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKP--GTTE 103 (450)
T ss_dssp TSTTHHHHHHHHHHHT-GGGCCHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCC--SSHH
T ss_pred CCCCHHHHHHHHHHhc-cccCCHHHHHHHHHH---CCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCC--CCHH
Confidence 3455554444444332 223344454444443 2222233333455667777888776644433 1122 2334
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHH--HHHHHHHhhhCCCCCHHhHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKE--ARSVFVKLLSRFAPNNKTMNIL 218 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--A~~~~~~m~~~~~~~~~~~~~l 218 (500)
.-.....+....|+.++|...+..+-..+ ......++.+...+.+.|.+.. ..+-+..+.... +...-..+
T Consensus 104 ~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-----~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~--~~~~a~~l 176 (450)
T d1qsaa1 104 AQCNYYYAKWNTGQSEEAWQGAKELWLTG-----KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG--NTGLVTVL 176 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSCS-----SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChhhHHHH
Confidence 44455666677788888877766654432 3445566666666666554332 222222222110 11111111
Q ss_pred HHHHHhcCCHHHHHHH----------HHHHHHCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 041822 219 LLGFKESGDVTAMEMF----------YHEMVLRGFRPSVVTYNIRIDGYCK--KGCFGDAMRLFEEMERVACLPSLQTIT 286 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~----------~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~ 286 (500)
+.. ...+.-..+... ....... ..+......+..++.+ ..+.+.|..++......... +...+.
T Consensus 177 ~~~-l~~~~~~~~~a~~~l~~~p~~~~~~~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~ 252 (450)
T d1qsaa1 177 AGQ-MPADYQTIASAIISLANNPNTVLTFARTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQ 252 (450)
T ss_dssp HHT-CCGGGHHHHHHHHHHHHCGGGHHHHHHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHH
T ss_pred Hhh-CChhHHHHHHHHHHHHhChHhHHHHHhcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHH
Confidence 110 000000000000 0000111 1222222222233222 24566677776666543311 211111
Q ss_pred H----HHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 287 T----LIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGL 362 (500)
Q Consensus 287 ~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 362 (500)
. +.......+..+.+...+......+. +.......+......+++..+...++.|..... ....-.--+..++
T Consensus 253 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~ 329 (450)
T d1qsaa1 253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLL 329 (450)
T ss_dssp HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHH
Confidence 1 12222334555666666665555432 333444445555566777777777766643211 1233334456677
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCC--CCHh----HHHHHHHHHhcCC
Q 041822 363 MKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC--PHGH----ALDLLVTGLCSRG 436 (500)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~----~~~~li~~~~~~g 436 (500)
...|+.+.|...|..... .++ |-.++.+ .+.|..-. +...... +... .-..-+..+...|
T Consensus 330 ~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa-~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g 395 (450)
T d1qsaa1 330 LERGREAEAKEILHQLMQ---QRG---FYPMVAA-QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWN 395 (450)
T ss_dssp HHTTCHHHHHHHHHHHHT---SCS---HHHHHHH-HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTT
T ss_pred HHcCChhhHHHHHHHHhc---CCC---hHHHHHH-HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcC
Confidence 777777777777777653 232 3222222 12221100 0000000 0000 0112356677899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 437 RWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
...+|...|..+... .+......+.....+.|.++.+.......
T Consensus 396 ~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 396 LDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 999999999988753 25566668888889999999888765544
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| >d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
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class: All alpha proteins fold: Methionine synthase domain-like superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain domain: Anthranilate phosphoribosyltransferase (TrpD) species: Pectobacterium carotovorum [TaxId: 554]
Probab=81.62 E-value=4 Score=24.94 Aligned_cols=62 Identities=6% Similarity=0.087 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCC--HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041822 181 FNVLLQAFCTQKE--MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG 242 (500)
Q Consensus 181 ~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 242 (500)
|+.++.-....++ .+++..+++.+.++..++...-..|+....+.-..++...+.+.|.+.+
T Consensus 2 ~~~il~kl~~g~~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~~kg~t~dEi~g~~~am~~~~ 65 (69)
T d1khda1 2 HQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADA 65 (69)
T ss_dssp CHHHHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 3445555544433 5666677777766655666666666666666556666666666666654
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