Citrus Sinensis ID: 041834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQSESMMQQGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLVIAASTSEICKSLSATLHLSA
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHccccccccccccccEccccccccccccccccHHHHEEHccccHHHHHcHHHEEccc
Coil and Loop (DISEMBL)
MATIDRYkkacadssnpgsiteANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQSESMmqqggghvyepaasqpydrnflpvnllepnhqyarqddqpplQLVIAASTSEICKSLSATLHLSA
Flexible Loop (DISEMBL)
matidrykkacadssnpgsiteaNTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARlekgigrvrskknEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQSESMMQQGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLVIAASTSEICKSLSATLHLSA
Low Complexity Region (SEG)
MATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAqqerqsesmmqqGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLVIAASTSEICKSLSATLHLSA
Disordered region (IsUnstruct)
*********************************KLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVR****EMLLAEIEFMEKREIQL**********************************************FLPVNLL****************LVIAA*****************
Disordered Region (DISOPRED)
MATIDRYKK********************QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI***********************************FLPVNLLEPNHQY*************************ATLHL**
Disordered Region (DISEMBL)
****************PGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE*******************HVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLVIAASTSEICKSLSATLHLSA
Disordered Region (DISPRO)
********K*CA**SNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQE****************PAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLVIAAST***CKSL***L*LS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATIDRYKKACADSSNPGSITEANxxxxxxxxxxxxxxxxxxxxxxxxILGEALSTLNFKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNMYLRxxxxxxxxxxxxxxxxxxxxxGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLVIAASTSEICKSLSATLHLSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
P29381	248	Agamous-like MADS-box pro	no	no	0.873	0.665	0.658	2e-60
P29385	246	Agamous-like MADS-box pro	no	no	0.862	0.662	0.670	3e-59
Q40168	248	Floral homeotic protein A	N/A	no	0.883	0.673	0.576	2e-49
Q43585	248	Floral homeotic protein A	N/A	no	0.883	0.673	0.6	3e-48
Q40885	242	Floral homeotic protein A	N/A	no	0.851	0.665	0.582	2e-47
Q40872	242	Floral homeotic protein A	N/A	no	0.857	0.669	0.568	1e-46
Q40704	236	MADS-box transcription fa	yes	no	0.867	0.694	0.491	2e-41
P17839	252	Floral homeotic protein A	no	no	0.862	0.646	0.522	3e-40
Q01540	252	Floral homeotic protein A	N/A	no	0.862	0.646	0.505	7e-39
Q2V0P1	272	MADS-box transcription fa	yes	no	0.835	0.580	0.459	5e-36

>sp|P29381|AGL1_ARATH Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1

 Score =  231 bits (589), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 143/173 (82%), Gaps = 8/173 (4%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TI+RYKKAC+D+ NP S+TEANTQ+YQQEA+KLRRQIR+IQN NRHI+GE+L +LNFKE
Sbjct: 79  GTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKE 138

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE RLEKGI RVRSKKNE+L+AEIE+M+KRE++LQ++NMYLRA+I+E  R   ++Q 
Sbjct: 139 LKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQE 198

Query: 122 ESMMQQGGGHVYEPAA-----SQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 169
            S++Q  G  VYE        SQ Y+RN++PVNLLEPN Q++ Q DQPPLQLV
Sbjct: 199 SSVIQ--GTTVYESGVSSHDQSQHYNRNYIPVNLLEPNQQFSGQ-DQPPLQLV 248

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=1 SV=1

 Score =  227 bits (579), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/173 (67%), Positives = 140/173 (80%), Gaps = 10/173 (5%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TI+RYKKAC+D+ NP +ITEANTQ+YQQEA+KLRRQIR+IQNLNRHILGE+L +LNFKE
Sbjct: 79  GTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKE 138

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE+RLEKGI RVRSKK+EML+AEIE+M+KREI+LQNDNMYLR++I+E    QQ  Q 
Sbjct: 139 LKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQ--QE 196

Query: 122 ESMMQQGGGHVYEPAA-----SQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 169
            S++ Q  G VYE        S  Y+RN++ VNLLEPN   + Q DQPPLQLV
Sbjct: 197 SSVIHQ--GTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQ-DQPPLQLV 246

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 129/170 (75%), Gaps = 3/170 (1%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
           ATI+RYKKAC+DSSN GS++EAN Q+YQQEA+KLR QI  + N NR+++GEAL+ +  KE
Sbjct: 80  ATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKE 139

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE R+EKGI ++RSKKNE+L AEIE+M+KRE+ L N+N YLRA+I+E ERAQ + Q 
Sbjct: 140 LKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQ 199

Query: 122 ESMMQQGGGHVYE--PAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 169
            ++M     + +E  P   Q   RN+L VN L+ N+ Y RQ DQPP+QLV
Sbjct: 200 MNLMPGSSSNYHELVPPPQQFDTRNYLQVNGLQTNNHYPRQ-DQPPIQLV 248

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Solanum lycopersicum (taxid: 4081)

>sp|Q43585|AG_TOBAC Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 131/170 (77%), Gaps = 3/170 (1%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
           ATI+RYKKAC+DSSN GSI+EAN Q+YQQEA+KLR QI  +QN NR++LGE+L+ L+ ++
Sbjct: 80  ATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRD 139

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE ++EKGI ++RSKKNE+L AEIE+M+KREI L N+N YLRA+I+E ERAQQ++Q 
Sbjct: 140 LKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQ 199

Query: 122 ESMMQQGGGHVYE--PAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 169
           + M    G   YE  P   Q   RN+L VN L+ N+ Y RQ DQP LQLV
Sbjct: 200 QQMNLMPGSSSYELVPPPHQFDTRNYLQVNGLQTNNHYTRQ-DQPSLQLV 248

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Nicotiana tabacum (taxid: 4097)

>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1

 Score =  188 bits (477), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/170 (58%), Positives = 127/170 (74%), Gaps = 9/170 (5%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
           ATI+RYKKAC+DSSN GSI EAN Q+YQQEA+KLR QI  +QN NR+ LGE+L+ LN ++
Sbjct: 80  ATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRD 139

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           L+NLE ++EKGI ++R+KKNE+L AEIE+M+KREI L N+N YLRA+I+E ER+QQ    
Sbjct: 140 LRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQ---- 195

Query: 122 ESMMQQGGGHVYEPA-ASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 169
             M    G   Y+     Q +D RN+L VN L+ N+ Y RQ DQPPLQLV
Sbjct: 196 --MNLMPGSSSYDLVPPQQSFDARNYLQVNGLQTNNHYPRQ-DQPPLQLV 242

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Petunia hybrida (taxid: 4102)

>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/169 (56%), Positives = 125/169 (73%), Gaps = 7/169 (4%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TI+RYKKAC DS N  S++EAN QFYQQEA+KLR++I  IQ  NR+++GE+L +L  ++
Sbjct: 80  GTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRD 139

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LK LE +LEKGI R+RSKKNE+L AEIE+M+K+EI L N+N YLRA+I+ENERAQQ    
Sbjct: 140 LKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQH--- 196

Query: 122 ESMMQQGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 169
             M    G   YE A  Q +D RN++ +N L+PN+ Y+RQ DQ  LQLV
Sbjct: 197 --MNLMPGSSDYELAPPQSFDGRNYIQLNGLQPNNHYSRQ-DQTALQLV 242

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Panax ginseng (taxid: 4054)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 123/169 (72%), Gaps = 5/169 (2%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLN-RHILGEALSTLNFK 60
           +T++RYKKA +D+SN G++ E N Q YQQE++KLR+QI  +QN N R I+G++++T++ +
Sbjct: 64  STVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLR 123

Query: 61  ELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQ 120
           +LK +E RLEKGI ++R++KNE+L AE+E+M+KRE++LQNDNMYLR+++ ENER QQ   
Sbjct: 124 DLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQPL- 182

Query: 121 SESMMQQGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQL 168
             +MM       Y+   + PYD RNFL VN+++    YA Q     LQL
Sbjct: 183 --NMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHYAHQLQPTTLQL 229

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/178 (52%), Positives = 122/178 (68%), Gaps = 15/178 (8%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TI+RYKKA +D+SN GS+ E N Q+YQQE+ KLR+QI  IQN NR ++GE + +++ KE
Sbjct: 80  GTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKE 139

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           L+NLE RLE+ I R+RSKKNE+L +EI++M+KRE+ L NDN  LRA+I+ENER      S
Sbjct: 140 LRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENER---NNPS 196

Query: 122 ESMMQQGGGHVYE------PAASQPYD-RNFLPVNLLEP-NHQY--ARQDDQPPLQLV 169
            S+M   GG  YE         SQP+D RN+  V  L+P NH Y  A + DQ  LQLV
Sbjct: 197 ISLMP--GGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQLV 252

Probable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms an heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1

 Score =  160 bits (404), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 90/178 (50%), Positives = 121/178 (67%), Gaps = 15/178 (8%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TI+RYKKA +D+SN GS+ E N Q+YQQE+ KLR+QI  IQN NR ++GE + +++ KE
Sbjct: 80  GTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKE 139

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           L+NLE RL++ + R+RSKKNE+L AEI++M+KRE+ L NDN  LRA+I+EN     ER +
Sbjct: 140 LRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAEN-----ERNN 194

Query: 122 ESMMQQGGGHVYE------PAASQPYD-RNFLPVNLLEP-NHQY--ARQDDQPPLQLV 169
            SM    GG  YE          QP+D RN+  V  L+P NH Y  A ++DQ  LQLV
Sbjct: 195 PSMSLMPGGSNYEQIMPPPQTQPQPFDSRNYFQVAALQPNNHHYSSAGREDQTALQLV 252

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Brassica napus (taxid: 3708)

>sp|Q2V0P1|MAD58_ORYSJ MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1

 Score =  150 bits (379), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 3   TIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKEL 62
           TI+RYKKA +D+SN  ++ E N Q YQQEA KL++QI  +QN NR ++G+ ++T+N +EL
Sbjct: 107 TIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHREL 166

Query: 63  KNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQSE 122
           K LE RL+KG+G++R++KNE+L AEIE+M++RE +LQNDNMYL+++++E+ER     Q+ 
Sbjct: 167 KQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERG---LQTV 223

Query: 123 SMMQQGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQ 163
           +MM       Y         RNFL  N++     Y  Q+D+
Sbjct: 224 NMMGSASTSEYVQNMIHYDPRNFLQFNIMHQPQYYPEQEDR 264

Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
116078101	257	MADS-box protein [Citrus unshiu]	0.888	0.653	1.0	4e-94
354683684	241	AGAMOUS-like protein [Mangifera indica]	0.857	0.672	0.786	4e-69
150251585	228	C-class floral identity [Carica papaya]	0.862	0.714	0.752	6e-67
397910984	202	PLENA, partial [Gunnera manicata]	0.851	0.797	0.710	1e-60
296086326	363	unnamed protein product [Vitis vinifera]	0.851	0.443	0.698	3e-60
189099167	246	SCHATTERPROOF2-like protein [Capsella bu	0.862	0.662	0.682	4e-60
225446881	225	PREDICTED: floral homeotic protein AGAMO	0.851	0.715	0.698	5e-60
122938399	234	MADS-box protein MADS7 [Gossypium hirsut	0.820	0.662	0.704	6e-60
150404774	202	AGAMOUS-like [Dillenia indica]	0.851	0.797	0.674	6e-60
189099165	246	SHATTERPROOF2-like protein [Capsella bur	0.862	0.662	0.676	1e-59

>gi|116078101|dbj|BAF34914.1| MADS-box protein [Citrus unshiu]

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
           ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE
Sbjct: 90  ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 149

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS
Sbjct: 150 LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 209

Query: 122 ESMMQQGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 169
           ESMMQQGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV
Sbjct: 210 ESMMQQGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 257

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|354683684|gb|AER34989.1| AGAMOUS-like protein [Mangifera indica]

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 151/169 (89%), Gaps = 7/169 (4%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
           +TI+RYKK+CADSSNPGS+TEANTQFYQQEATKLRRQIREIQNLNRHILGEALS+L+FKE
Sbjct: 79  STIERYKKSCADSSNPGSVTEANTQFYQQEATKLRRQIREIQNLNRHILGEALSSLSFKE 138

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLEARLEKGI R+RSKKNEML AEIEFM+KREIQLQNDNMYLRA+I+ENER +Q  Q 
Sbjct: 139 LKNLEARLEKGISRIRSKKNEMLFAEIEFMQKREIQLQNDNMYLRAKIAENERVEQ--QQ 196

Query: 122 ESMMQQGGGHVYEPAA-SQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 169
            +MMQ   G VY+ +  SQ YDRNF+PVNLLEPNHQY+R ++Q  LQLV
Sbjct: 197 SNMMQ---GAVYDQSVPSQSYDRNFIPVNLLEPNHQYSR-EEQTALQLV 241

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150251585|gb|ABR68012.1| C-class floral identity [Carica papaya]

 Score =  258 bits (660), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 149/170 (87%), Gaps = 7/170 (4%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
           ATI+RYKKAC+D++NPGS+TEANTQFYQQEATKLRRQIREIQN NRHILGEAL +L FKE
Sbjct: 64  ATIERYKKACSDATNPGSVTEANTQFYQQEATKLRRQIREIQNSNRHILGEALGSLTFKE 123

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE RLEKGI R+RSKKNE+L AEIE+M+KREI+LQNDNMYLRA+I+ENER Q+++QS
Sbjct: 124 LKNLEGRLEKGISRIRSKKNELLFAEIEYMQKREIELQNDNMYLRAKIAENERVQEQQQS 183

Query: 122 ESMMQQGGGHVYE--PAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 169
            ++MQ   G VYE  P+ SQ Y+RNFLPVNLLEPNHQY+  DD   LQLV
Sbjct: 184 -NLMQ---GSVYESMPSQSQTYNRNFLPVNLLEPNHQYS-ADDHTALQLV 228

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397910984|gb|AFO68768.1| PLENA, partial [Gunnera manicata]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/169 (71%), Positives = 139/169 (82%), Gaps = 8/169 (4%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
           +TI+RYKKA +D+SNPGS+ E N QFYQQEA+KLRRQIR+IQNLNRHILGEAL +L FKE
Sbjct: 41  STIERYKKASSDNSNPGSVAEVNAQFYQQEASKLRRQIRDIQNLNRHILGEALGSLTFKE 100

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE RLEKGI R+RS+KNE+L AEIE+M+KREI+LQNDNMY+RA+ISENERAQQ+   
Sbjct: 101 LKNLEGRLEKGISRIRSEKNELLFAEIEYMQKREIELQNDNMYMRAKISENERAQQQ--- 157

Query: 122 ESMMQQGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 169
              M    G  YE   SQPYD RNFLPVNL+EPN  Y+ Q DQ PLQLV
Sbjct: 158 ---MSLMPGSEYEGMHSQPYDSRNFLPVNLMEPNQHYSCQ-DQTPLQLV 202

Source: Gunnera manicata

Species: Gunnera manicata

Genus: Gunnera

Family: Gunneraceae

Order: Gunnerales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086326|emb|CBI31767.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 138/169 (81%), Gaps = 8/169 (4%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TI+RYKK C+DSSN GS++EAN QFYQQEA+KLRRQIR+IQNLNRHILGEALS+LNFKE
Sbjct: 153 TTIERYKKVCSDSSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLNFKE 212

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE RLEKGI R+RSKKNE+L AEIE+M+KREI+LQN N++LRA+I+ENERAQQ+   
Sbjct: 213 LKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFLRAQIAENERAQQQ--- 269

Query: 122 ESMMQQGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 169
              M    G  YE    QPYD +N LPVNLL+PNH Y+R  DQ  LQLV
Sbjct: 270 ---MNLMPGSQYESVPQQPYDSQNLLPVNLLDPNHHYSRH-DQTALQLV 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|189099167|gb|ACD76825.1| SCHATTERPROOF2-like protein [Capsella bursa-pastoris]

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/173 (68%), Positives = 145/173 (83%), Gaps = 10/173 (5%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TI+RYKKAC+D+ NP S+TEANTQ+YQQEA+KLRRQIR+IQNLNRHILGE+L +LNFKE
Sbjct: 79  GTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKE 138

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE+RLEKGI RVRSKK+EML+AEIE+M+KREI+LQNDNMYLR++I+  ERA  ++Q 
Sbjct: 139 LKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKIT--ERAGLQQQE 196

Query: 122 ESMMQQGGGHVYEPAA-----SQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 169
            S++ QG   VYE        S+ Y+RN++PVNLLEPNH  + Q DQPPLQLV
Sbjct: 197 SSVIHQGT--VYESGVTSSHQSEQYNRNYIPVNLLEPNHNSSNQ-DQPPLQLV 246

Source: Capsella bursa-pastoris

Species: Capsella bursa-pastoris

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446881|ref|XP_002283924.1| PREDICTED: floral homeotic protein AGAMOUS [Vitis vinifera] gi|14279306|gb|AAK58564.1|AF265562_1 MAD-box transcripion factor [Vitis vinifera]

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 138/169 (81%), Gaps = 8/169 (4%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TI+RYKK C+DSSN GS++EAN QFYQQEA+KLRRQIR+IQNLNRHILGEALS+LNFKE
Sbjct: 64  TTIERYKKVCSDSSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLNFKE 123

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE RLEKGI R+RSKKNE+L AEIE+M+KREI+LQN N++LRA+I+ENERAQQ+   
Sbjct: 124 LKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFLRAQIAENERAQQQ--- 180

Query: 122 ESMMQQGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 169
              M    G  YE    QPYD +N LPVNLL+PNH Y+R  DQ  LQLV
Sbjct: 181 ---MNLMPGSQYESVPQQPYDSQNLLPVNLLDPNHHYSRH-DQTALQLV 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122938399|gb|ABM69045.1| MADS-box protein MADS7 [Gossypium hirsutum]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 140/169 (82%), Gaps = 14/169 (8%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
           ATI+RYKKAC+D++ PGS+ EAN QFYQQEATKLRRQIR++QN+NRHILGEALS+L FKE
Sbjct: 79  ATIERYKKACSDATTPGSVAEANIQFYQQEATKLRRQIRDVQNMNRHILGEALSSLTFKE 138

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE RLEKGI R+RSKKNE+L AEI FM+KRE++LQNDNMYLRA+I+ENERAQQ  QS
Sbjct: 139 LKNLEGRLEKGICRIRSKKNELLFAEIGFMQKREVELQNDNMYLRAKIAENERAQQ--QS 196

Query: 122 ESMMQQGGGHVYEPAASQPYDRNFLPVNLLEP-NHQYARQDDQPPLQLV 169
             +MQ          A+  Y+RNFLPVNLLEP N+ Y+ Q DQ PLQLV
Sbjct: 197 NQLMQ----------AASSYNRNFLPVNLLEPSNNDYSNQ-DQTPLQLV 234

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150404774|gb|ABR68545.1| AGAMOUS-like [Dillenia indica]

 Score =  235 bits (599), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 136/169 (80%), Gaps = 8/169 (4%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TIDRYKKAC+DSSN GS+ EANTQFYQQE+ KLRRQI++IQNLNRHILGEAL +LN KE
Sbjct: 41  GTIDRYKKACSDSSNTGSVAEANTQFYQQESNKLRRQIKDIQNLNRHILGEALGSLNLKE 100

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE RLEKG+ R+RSKKNE+L AEIE+++KREI+L N+NMY+RA+I+ENERAQQ    
Sbjct: 101 LKNLEGRLEKGLSRIRSKKNELLFAEIEYLQKREIELHNENMYIRAKIAENERAQQ---- 156

Query: 122 ESMMQQGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 169
              M    G  YEP ++QPYD RN +P NLLEP+  Y+R D   PLQLV
Sbjct: 157 ---MSLMPGSSYEPMSTQPYDSRNLVPANLLEPDQHYSRPDQPAPLQLV 202

Source: Dillenia indica

Species: Dillenia indica

Genus: Dillenia

Family: Dilleniaceae

Order: Dilleniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|189099165|gb|ACD76824.1| SHATTERPROOF2-like protein [Capsella bursa-pastoris]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/173 (67%), Positives = 145/173 (83%), Gaps = 10/173 (5%)

Query: 2   ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
            TI+RYKKAC+D+ NP S+TEANTQ+YQQEA+KLRRQIR+IQNLNRHILGE+L +LNFKE
Sbjct: 79  GTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKE 138

Query: 62  LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQQERQS 121
           LKNLE+RLEKGI RVRSKK+EML+AEIE+M+KREI+LQNDNM+LR++I+  ERA  ++Q 
Sbjct: 139 LKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMFLRSKIT--ERAGLQQQE 196

Query: 122 ESMMQQGGGHVYEPAA-----SQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 169
            S++ QG   VYE        S+ Y+RN++PVNLLEPNH  + Q DQPPLQLV
Sbjct: 197 SSVIHQGT--VYESGVTSSHQSEQYNRNYIPVNLLEPNHNSSNQ-DQPPLQLV 246

Source: Capsella bursa-pastoris

Species: Capsella bursa-pastoris

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
UNIPROTKB|Q40885	242	AG1 "Floral homeotic protein A	0.851	0.665	0.564	1e-43
UNIPROTKB|Q9ZS29	246	GAGA2 "MADS-box protein, GAGA2	0.851	0.654	0.560	4e-42
UNIPROTKB|Q9ZS30	264	gaga1 "MADS-box protein, GAGA1	0.857	0.613	0.531	4.2e-40
UNIPROTKB|Q43616	225	fbp7 "Floral binding protein n	0.851	0.715	0.502	1.9e-35
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.846	0.701	0.491	8.3e-35
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	0.597	0.441	0.575	3.7e-32
UNIPROTKB|Q2QW53	270	MADS13 "MADS-box transcription	0.597	0.418	0.573	3.8e-30
UNIPROTKB|Q6EUV6	247	grcd3 "MADS domain protein" [G	0.571	0.437	0.327	6.9e-15
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	0.798	0.604	0.303	2.1e-13
UNIPROTKB|Q10PZ9	257	MADS1 "MADS-box transcription	0.703	0.517	0.319	5.6e-13

UNIPROTKB|Q40885 AG1 "Floral homeotic protein AGAMOUS" [Petunia x hybrida (taxid:4102)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 96/170 (56%), Positives = 124/170 (72%)

Query:     2 ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
             ATI+RYKKAC+DSSN GSI EAN Q+YQQEA+KLR QI  +QN NR+ LGE+L+ LN ++
Sbjct:    80 ATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRD 139

Query:    62 LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXX 121
             L+NLE ++EKGI ++R+KKNE+L AEIE+M+KREI L N+N YLRA+I+E ER+      
Sbjct:   140 LRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLM 199

Query:   122 XXXXXXGGGHVYEPAA-SQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 169
                    G   Y+     Q +D RN+L VN L+ N+ Y RQD QPPLQLV
Sbjct:   200 P------GSSSYDLVPPQQSFDARNYLQVNGLQTNNHYPRQD-QPPLQLV 242

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS29 GAGA2 "MADS-box protein, GAGA2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 97/173 (56%), Positives = 123/173 (71%)

Query:     3 TIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNR----HILGEALSTLN 58
             TIDRYKKAC D  + GS+ EAN QFYQQEA KLR+QI  +QN NR    +I+GE+L  + 
Sbjct:    80 TIDRYKKACLDPPSSGSVAEANAQFYQQEAAKLRQQIANLQNQNRQFYRNIMGESLGNMP 139

Query:    59 FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXX 118
              K+LKNLE++LEKGIG++RSKKNE+L AEIE+M+KRE +L N N +LR++I+ENERA   
Sbjct:   140 AKDLKNLESKLEKGIGKIRSKKNEILFAEIEYMQKRENELHNSNQFLRSKIAENERAQQH 199

Query:   119 XXXXXXXXXGGGHVYEPAAS-QPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 169
                       G   YE  A  QP+D RN+L VN L+PN+ Y+ QD Q PLQLV
Sbjct:   200 MSLMP-----GSSDYELVAPHQPFDGRNYLQVNDLQPNNNYSCQD-QTPLQLV 246

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS30 gaga1 "MADS-box protein, GAGA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 92/173 (53%), Positives = 118/173 (68%)

Query:     3 TIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNR----HILGEALSTLN 58
             TID+YKKAC D    G++ EANTQ+YQQEA KLR+QI  +QN NR    +I+GE+L  + 
Sbjct:    97 TIDKYKKACLDPPTSGTVAEANTQYYQQEAAKLRQQIANLQNQNRQFYRNIMGESLGDMP 156

Query:    59 FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXX 118
              K+LKNLE +LEK I R+R+KKNE+L AEIE+M+KRE++L N N +LRA+I ENERA   
Sbjct:   157 VKDLKNLEGKLEKAISRIRAKKNELLFAEIEYMQKRELELHNSNQFLRAKIVENERAQQH 216

Query:   119 XXXXXXXXXGGGHVYEPAAS-QPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 169
                       G   YE     QP+D RN+L  N L+PN+ Y+ QD Q PLQLV
Sbjct:   217 HMSLMP----GSSDYELVTPHQPFDGRNYLQTNDLQPNNDYSCQD-QTPLQLV 264

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q43616 fbp7 "Floral binding protein number 7" [Petunia x hybrida (taxid:4102)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 84/167 (50%), Positives = 110/167 (65%)

Query:     2 ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
             A IDRYKKA  ++SN  +  E N QFYQQE+ KLR+QI+ IQN NRH++GE LS+LN +E
Sbjct:    64 AIIDRYKKATVETSNAFTTQELNAQFYQQESKKLRQQIQLIQNSNRHLVGEGLSSLNVRE 123

Query:    62 LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXX 121
             LK LE RLE+GI R+RSKK+EM+LAE E ++KREIQL+ +N +LR++I+ENER       
Sbjct:   124 LKQLENRLERGIARIRSKKHEMILAESEDLQKREIQLEQENAFLRSKIAENERLQELSMM 183

Query:   122 XXXXXXGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQL 168
                    GG  Y  A  Q   RN L +N++E    Y    D+  L L
Sbjct:   184 PA-----GGQEYN-AIQQYLARNMLQLNMMEGVPSYPLPSDKKSLDL 224

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 83/169 (49%), Positives = 113/169 (66%)

Query:     3 TIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKEL 62
             TI+RYKKA A++SN  +  E N QFYQQE+ KLR+QI+ +QN NRH++GE LS LN +EL
Sbjct:    65 TIERYKKATAETSNACTTQELNAQFYQQESKKLRQQIQLLQNTNRHLVGEGLSALNVREL 124

Query:    63 KNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXX 122
             K LE RLE+GI R+RSKK+EM+LAE E ++KREIQL+ +N +LR++I+ENER        
Sbjct:   125 KQLENRLERGITRIRSKKHEMILAETENLQKREIQLEQENTFLRSKIAENERLQELSMMP 184

Query:   123 XXXXXGGGHVYEPAASQPYDRNFLPVNLLE---PNHQYARQDDQPPLQL 168
                    G  Y  A  Q + RN L +N++E   P++      D+  LQL
Sbjct:   185 AT-----GQEYN-AFQQYFARNMLQLNMMEGGVPSYDPLPAHDKKSLQL 227

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 65/113 (57%), Positives = 93/113 (82%)

Query:     2 ATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKE 61
             +TI+RYKKAC+DS+N  ++ E N  +YQQE+ KLR+QI+ IQN NR+++G++LS+L+ KE
Sbjct:    90 STIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKE 149

Query:    62 LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114
             LK +E RLEK I R+RSKK+E+LL EIE  +KREI+L N+N+YLR +++E ER
Sbjct:   150 LKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVER 202

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q2QW53 MADS13 "MADS-box transcription factor 13" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 66/115 (57%), Positives = 90/115 (78%)

Query:     2 ATIDRYKKACADSSNPGS-ITEANTQ-FYQQEATKLRRQIREIQNLNRHILGEALSTLNF 59
             ATIDRYKKA A  S  G+ + E N Q +YQQE+ KLR QI+ +QN N+H++G+ +S L+ 
Sbjct:    65 ATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSL 124

Query:    60 KELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114
             KELK LE+RLEKGI ++R++KNE+L +EI +M KREI+LQNDNM LR +I+E E+
Sbjct:   125 KELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQ 179

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048283 "indeterminate inflorescence morphogenesis" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

UNIPROTKB|Q6EUV6 grcd3 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 36/110 (32%), Positives = 69/110 (62%)

Query:     1 MATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFK 60
             M T++RY++ C +  +  +  E  TQ + QE +KL+ +   +Q   RH+LGE L  L+ K
Sbjct:    63 MKTLERYQRCCFNPQDNNN--ERETQSWYQEVSKLKAKFESLQRTQRHLLGEDLGPLSVK 120

Query:    61 ELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIS 110
             EL NLE +LE  + + R +K ++++ ++E + ++E +L + N +L+ ++S
Sbjct:   121 ELHNLEKQLEGALTQARQRKTQIMVEQMEELRRKERELGDMNKHLKIKVS 170

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 51/168 (30%), Positives = 86/168 (51%)

Query:     3 TIDRYKKAC--ADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFK 60
             T++RY+  C  A  SN  +++E  TQ +  E +KL+ +   +Q   RH+LGE L  L+ K
Sbjct:    65 TLERYQHCCYNAQDSN-NALSE--TQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVK 121

Query:    61 ELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXX 120
             EL+ LE +LE  + + R +K ++++ ++E + ++E QL   N  L+ ++ E E +     
Sbjct:   122 ELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKL-EVEGSTSNYR 180

Query:   121 XXXXXXXGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQL 168
                      G V E  A+  Y +   P     P H  A  D +P LQ+
Sbjct:   181 AMQQASWAQGAVVENGAA--YVQ---P-----PPHS-AAMDSEPTLQI 217

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

UNIPROTKB|Q10PZ9 MADS1 "MADS-box transcription factor 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 45/141 (31%), Positives = 75/141 (53%)

Query:     3 TIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKEL 62
             T++RY+ +C  +S   +  E    +  QE  KL+ ++  +Q   R+ILGE L  L+ KEL
Sbjct:    66 TLERYR-SCNYNSQDAAAPENEINY--QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKEL 122

Query:    63 KNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXX 122
             + LE ++E  + ++RS+KN+ LL ++  ++ +E QLQ+ N  LR ++ E           
Sbjct:   123 EQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETS---AENVLH 179

Query:   123 XXXXXGGGHVYEPA--ASQPY 141
                  GGGH       A QP+
Sbjct:   180 MSWQDGGGHSGSSTVLADQPH 200

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	SHP1	SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor; One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. ; Probable transcription factor (248 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	SEP3	SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor; Member of the MADs box [...] (251 aa)					•		•	•	0.999
	F14F8_180	SEP1 (SEPALLATA1); DNA binding / transcription factor; Encodes a MADS box transcription factor [...] (262 aa)					•		•	•	0.969
	AG	AG (AGAMOUS); DNA binding / transcription factor; Floral homeotic gene encoding a MADS domain t [...] (252 aa)					•		•	•	0.948
	TT16	TT16 (TRANSPARENT TESTA16); transcription factor; Encodes a MADS box protein. Regulates proanth [...] (252 aa)					•		•	•	0.936
	AGL79	AGL79 (AGAMOUS-LIKE 79); DNA binding / transcription factor; AGAMOUS-LIKE 79 (AGL79); FUNCTIONS [...] (249 aa)					•			•	0.932
	SHP2	SHP2 (SHATTERPROOF 2); protein binding / transcription factor; AGAMOUS [AG]-like MADS box prote [...] (248 aa)				•	•		•	•	0.911
	STK	STK (SEEDSTICK); protein binding / transcription factor; a MADS box transcription factor expres [...] (256 aa)				•	•		•	•	0.895
	SEP4	SEP4 (SEPALLATA 4); DNA binding / transcription factor; This gene belongs to the family of SEP [...] (258 aa)					•		•	•	0.873
	VSP1	VSP1 (VEGETATIVE STORAGE PROTEIN 1); acid phosphatase/ transcription factor binding; encodes an [...] (270 aa)					•				0.847
	AT1G33610	protein binding; protein binding; FUNCTIONS IN- protein binding; INVOLVED IN- signal transducti [...] (907 aa)					•				0.847

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
pfam01486	100	pfam01486, K-box, K-box region	3e-30

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score =  106 bits (266), Expect = 3e-30
 Identities = 41/99 (41%), Positives = 65/99 (65%)

Query: 13  DSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKG 72
              +   + E+  +  QQEA KL++Q   +Q   RH+LGE L +L+ KEL+ LE +LE G
Sbjct: 2   QKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENG 61

Query: 73  IGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111
           +  +RS+KNE+LL +IE ++K+E +LQ +N  LR ++ E
Sbjct: 62  LKHIRSRKNELLLNQIEELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.93
KOG0014	195	consensus MADS box transcription factor [Transcrip	96.94
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.61
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.29
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	91.12
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	88.37
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.91
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	85.54
COG2433	652	Uncharacterized conserved protein [Function unknow	84.1
PRK13169	110	DNA replication intiation control protein YabA; Re	84.02
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	82.76
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.29

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.93  E-value=4.7e-25  Score=164.36  Aligned_cols=95  Identities=38%  Similarity=0.611  Sum_probs=91.9

Q ss_pred             CCCCChhhhHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041834           17 PGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREI   96 (189)
Q Consensus        17 ~~~~~~~~~q~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~   96 (189)
                      +...|..+.+.|+.|+++|+.+++.|+..+|+|+||||++||++||.+||++|+.||++||+||+++|+++|+.|++|+.
T Consensus         6 ~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~   85 (100)
T PF01486_consen    6 GTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKER   85 (100)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 041834           97 QLQNDNMYLRARISE  111 (189)
Q Consensus        97 ~L~eeN~~Lr~ki~e  111 (189)
                      .|.++|..|+.+|+|
T Consensus        86 ~l~~en~~L~~~~~e  100 (100)
T PF01486_consen   86 ELEEENNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999864

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=96.94  E-value=0.00023  Score=57.75  Aligned_cols=74  Identities=24%  Similarity=0.365  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHH---HhhchhccCCCCCCH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 041834           28 YQQEATKLRRQIREIQN---LNRHILGEALSTLNF-KELKNLEARLEKGIGRVRSKKNEMLLAEIE-FMEKREIQLQND  101 (189)
Q Consensus        28 ~~~E~~kLk~eie~Lq~---~~R~l~GEdL~~Lsl-kEL~~LE~qLE~sL~~IRsrK~qll~~eI~-~LqkKe~~L~ee  101 (189)
                      +..+...++..++.|+.   .+|+++|++|.++++ .+|..+|.+|+.++..+|..+...+.+++. .++.++..+.+.
T Consensus       112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (195)
T KOG0014|consen  112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEAE  190 (195)
T ss_pred             hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhcccc
Confidence            44566777778887764   499999999999999 999999999999999999999999998887 555555544443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.61  E-value=0.2  Score=35.38  Aligned_cols=52  Identities=17%  Similarity=0.333  Sum_probs=40.0

Q ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE  113 (189)
Q Consensus        57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~  113 (189)
                      ||+.-|.+||.++..++..|..     |..+++.|+.+...|.++|..|+.......
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            6889999999999999999865     445678888887777777777777765544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.29  E-value=2.2  Score=30.71  Aligned_cols=46  Identities=20%  Similarity=0.397  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRA  107 (189)
Q Consensus        57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~  107 (189)
                      ||++=|.+||.++..|+.-|     .+|.-+|++|+.|-..|.+++..++.
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~~~~   46 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH   46 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67888999999999999887     46667788888887777777666433

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.12  E-value=3.3  Score=29.35  Aligned_cols=53  Identities=21%  Similarity=0.374  Sum_probs=41.4

Q ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER  114 (189)
Q Consensus        57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~  114 (189)
                      ||++=|.+||.++..|+.-|     .|+.-+|++|+.|...|..+-..++...++.++
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL~~   53 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREALER   53 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence            67888999999999999887     577788999998888777776666666555443

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=88.37  E-value=0.83  Score=34.81  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           86 AEIEFMEKREIQLQNDNMYLRARISEN  112 (189)
Q Consensus        86 ~eI~~LqkKe~~L~eeN~~Lr~ki~e~  112 (189)
                      .++..|+||.+.|+|||++|+-||+-.
T Consensus        72 ~e~~rlkkk~~~LeEENNlLklKievL   98 (108)
T cd07429          72 REVLRLKKKNQQLEEENNLLKLKIEVL   98 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678999999999999999998643

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.91  E-value=1  Score=30.70  Aligned_cols=31  Identities=42%  Similarity=0.549  Sum_probs=23.7

Q ss_pred             chhccCCCCCCHHHHHHHHHHHHHHHhHHHH
Q 041834           48 HILGEALSTLNFKELKNLEARLEKGIGRVRS   78 (189)
Q Consensus        48 ~l~GEdL~~LslkEL~~LE~qLE~sL~~IRs   78 (189)
                      +..|+||+.||+.||..==..|+.=+.|+|.
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999998766666655555553

The function of this family is unknown.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=85.54  E-value=7.5  Score=29.39  Aligned_cols=51  Identities=25%  Similarity=0.404  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           59 FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER  114 (189)
Q Consensus        59 lkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~  114 (189)
                      +..|.+||++|..-+..|..-|.+     +..|-..-..|.-||..||..+.+...
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356778888888776666665533     334444555666667777777766543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.10  E-value=16  Score=35.56  Aligned_cols=84  Identities=24%  Similarity=0.326  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           28 YQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRS-----KKNEMLLAEIEFMEKREIQLQNDN  102 (189)
Q Consensus        28 ~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRs-----rK~qll~~eI~~LqkKe~~L~eeN  102 (189)
                      +..++.++...++.|+..+++|..+ +..|. +++..||.+|+..-.+++.     |+-+.+..+|+.|+++...-...-
T Consensus       420 ~~~~i~~~~~~ve~l~~e~~~L~~~-~ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v  497 (652)
T COG2433         420 YEKRIKKLEETVERLEEENSELKRE-LEELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV  497 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666666666665442 11111 8889999999998888873     445667778888888766666666


Q ss_pred             HHHHHHHHHHH
Q 041834          103 MYLRARISENE  113 (189)
Q Consensus       103 ~~Lr~ki~e~~  113 (189)
                      ..|+.++.++.
T Consensus       498 e~L~~~l~~l~  508 (652)
T COG2433         498 EELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHH
Confidence            67777777655

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=84.02  E-value=8.9  Score=29.24  Aligned_cols=49  Identities=24%  Similarity=0.329  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           59 FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISEN  112 (189)
Q Consensus        59 lkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~  112 (189)
                      ++-|.+||+++..-+..|..-|.+     +..|-.....|.-||..||.++.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788999988877777766643     3355555667777777788888764

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=82.76  E-value=3.3  Score=28.23  Aligned_cols=27  Identities=33%  Similarity=0.503  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           82 EMLLAEIEFMEKREIQLQNDNMYLRAR  108 (189)
Q Consensus        82 qll~~eI~~LqkKe~~L~eeN~~Lr~k  108 (189)
                      +.+.++|.+|..+...|+.||..||..
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456667777777777777777777644

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.29  E-value=10  Score=30.17  Aligned_cols=54  Identities=22%  Similarity=0.266  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhcc--C-CCCCCHHHHHHHHHHHHHHHhHHHHHH
Q 041834           27 FYQQEATKLRRQIREIQNLNRHILGE--A-LSTLNFKELKNLEARLEKGIGRVRSKK   80 (189)
Q Consensus        27 ~~~~E~~kLk~eie~Lq~~~R~l~GE--d-L~~LslkEL~~LE~qLE~sL~~IRsrK   80 (189)
                      .+..++..|+.++..|+...+.+..|  . ...++..||...=.+|+.-+..+.+|=
T Consensus        76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL  132 (169)
T PF07106_consen   76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL  132 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555554444444444322  1 234556666555444444444444433

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.87
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	84.38
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	83.03
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	82.25
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	81.23
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	80.55

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.87  E-value=0.74  Score=32.34  Aligned_cols=47  Identities=19%  Similarity=0.399  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRAR  108 (189)
Q Consensus        57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~k  108 (189)
                      ||++=|.+||.++..++..|     .+|..+|++|+.|-..|..+|..++..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~~   49 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQ   49 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78889999999999999887     566778889998888888888775553

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=84.38  E-value=6.8  Score=25.85  Aligned_cols=53  Identities=25%  Similarity=0.365  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           55 STLNFKELKNLEARLEKGIGRVR--SKKNEMLLAEIEFMEKREIQLQNDNMYLRA  107 (189)
Q Consensus        55 ~~LslkEL~~LE~qLE~sL~~IR--srK~qll~~eI~~LqkKe~~L~eeN~~Lr~  107 (189)
                      ++.++.|-.++-+-|-.|=.+|-  -+=+.-|.+++.-||++...|+-+|..||.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            45677777777777777666664  233556788999999999999999999974

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=83.03  E-value=4.3  Score=26.78  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE  113 (189)
Q Consensus        72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~  113 (189)
                      |-.+.|.||.+    .+..|..+...|..+|..|+..+....
T Consensus        20 AArrsR~RK~~----~~~~Le~~v~~L~~eN~~L~~ev~~Lr   57 (63)
T 2dgc_A           20 AARRSRARKLQ----RMKQLEDKVEELLSKNYHLENEVARLK   57 (63)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888855    456899999999999999999887654

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=82.25  E-value=7.3  Score=25.53  Aligned_cols=41  Identities=27%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ  116 (189)
Q Consensus        72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~  116 (189)
                      |..+-|.+|.    +.+..|..+...|..+|..|+.+|.......
T Consensus        13 AA~R~R~KKk----~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~   53 (63)
T 1ci6_A           13 AATRYRQKKR----AEQEALTGECKELEKKNEALKERADSLAKEI   53 (63)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777764    4567889999999999999999998876644

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=81.23  E-value=19  Score=28.78  Aligned_cols=88  Identities=20%  Similarity=0.236  Sum_probs=49.2

Q ss_pred             CChhhhHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHH-HHHHHHHHHHhHHHHHHHH--HHHHH---------
Q 041834           20 ITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELK-NLEARLEKGIGRVRSKKNE--MLLAE---------   87 (189)
Q Consensus        20 ~~~~~~q~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~-~LE~qLE~sL~~IRsrK~q--ll~~e---------   87 (189)
                      ..+....||...+..++.++..++...--|...      -+||. .||..|+.+=+++|.-+.+  .+..+         
T Consensus         7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqes------SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~   80 (189)
T 2v71_A            7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEG------SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLE   80 (189)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456688887777777777777766555542      13332 3444444444444433222  12222         


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           88 ---------IEFMEKREIQLQNDNMYLRARISENE  113 (189)
Q Consensus        88 ---------I~~LqkKe~~L~eeN~~Lr~ki~e~~  113 (189)
                               |..|++....|...+..|+.+|.+.+
T Consensus        81 ~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE  115 (189)
T 2v71_A           81 HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE  115 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     55566666667777777777776544

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=80.55  E-value=8.4  Score=25.12  Aligned_cols=41  Identities=15%  Similarity=0.347  Sum_probs=32.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834           72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ  116 (189)
Q Consensus        72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~  116 (189)
                      |..+-|.||.+.    +..|+.+...|..+|..|+..|.......
T Consensus        13 AA~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~~L~~e~   53 (63)
T 2wt7_A           13 AAAKCRNRRREL----TDTLQAETDQLEDEKSALQTEIANLLKEK   53 (63)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778888654    56899999999999999999998765543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00