Citrus Sinensis ID: 041836


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MEKEAIEETETNKQEDVEPPKDDGKEDEKKNSPRKDNSSELEIPVTKAEKVPVLAEVEKVDNFPCTDVPAEVNNVDNTVSEEPLEILSEKKVAIEASKETPQEKPGAEAGKEDAEETVPVGTVVQEEKSAVESLPEEKPLIEAVENAEKEKKAVEVAKNVDEEPEVEAVEKERPPAETLPEEKPATETVESAQEDKPAVEEVEKLPEEKRAAEAVGSVQGVKPAETSAEEKPAAVVEEAEKLEKEEPAATNVNVQEVIEKVNNHIKEETDDNKAKDNTATEQVEEEIETENVEPISSTEDVGRSADSKAMAIVDEMKAKPQEPSKVIVEEFAEKFEKDNHGTKPAEKEENISAGAEPTAIEISPATNDEAQADLKEVANDSPVSGIVEKIDDERRRDGTTVIETDIAELKEEKNVKMDQVMTEEKNEKTESVIASERASSIAAQVTEKSLVEEQESRDVEMIKKKQDLPSAENERDVAEATVDVKAEETNKKAETNLESTEEAVVDGKKADPPTKEGDDTKNSKEFSAKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKGDENIN
cHHHHHHHHHcccccccccccccccHHHHccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccHHHHHcccccHHHHHcccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccc
ccccccccccccccHHccccccHHHHHHHHccccHHHHHHHcccccccccccHHHHHHcccccccccccHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHccHcHccccHHHHHHHcccccccccccccccHHcccccccccccHcccHHccccHHHHccccHHHHHHHHccHHccccccHcccccccccccHHHHHHcccccccccccHHHHHHcccccccHccccccccccHHHHHHHHHHHHccccccccHHHHHHHcccccHHcHHHccccccccccEEEHcccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccHHHHccccHcccccccccccccHHHHcccccHHHHHHHHHHccccccccccccccHHHHccHHHHcccHHHHHHHHHHcHHHHcccccccccccccccEccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHcHHccccccccccHHHHHccccccccccHccccccccc
MEKEAIEEtetnkqedveppkddgkedekknsprkdnsseleipvtkaekvpvlaevekvdnfpctdvpaevnnvdntvseeplEILSEKKVAIEAsketpqekpgaeagkedaeetvpvgtVVQEEKSaveslpeekplIEAVENAEKEKKAVEVAKnvdeepeveavekerppaetlpeekpatetvesaqedkpavEEVEKLPEEKRAAEAVgsvqgvkpaetsaeekpaAVVEEAEKlekeepaatnVNVQEVIEKVNNHIkeetddnkakdntATEQVEEEietenvepisstedvgrsadSKAMAIVDEMkakpqepsKVIVEEFAEKFekdnhgtkpaekeenisagaeptaieispatndEAQADLKevandspvsgivekidderrrdgttVIETDIAELKEEKNVKMDQVMTEEKNEKTESVIASERASSIAAQVTEKSLVEEQESRDVEMIKkkqdlpsaenerDVAEATVDVKAEETNKKAETNLESTEEAvvdgkkadpptkegddtknskefsakppqkssgnLLSKVKQSLGKVKkaivgkspssktlqseakgdenin
mekeaieetetnkqedveppkddgkedekknsprkdnsseleipvtkaekvpvLAEVEkvdnfpctdvpaevnnvdntvseepLEILSEKKVAieasketpqekpgaeagkedaeetvpvgtvvqeeksaveslpeekplieAVENAEKEKKAVEvaknvdeepeveavekerppaetlpeekpatetvesaqedkpaveeveklpeekraaeavgsvqgvkpaetsaeekpaAVVEEAEklekeepaatnvnvqEVIEKVNNhikeetddnkakdntateqveeeietenvepisstedvgrsaDSKAMAIVDEmkakpqepskVIVEEFAEKfekdnhgtkpaekeenisagaepTAIEISPATNDEAQADLkevandspvsgivekidderrrdgttvietdiaelkeeknvkmdqvmteeknektesviaserassiaaqvtekslveeqesrdvemikkkqdlpsaenerdvaeatvdvkaeetnkkaetnlesteeavvdgkkadpptkegddtknskefsakppqkssgnllSKVKQSLGKVkkaivgkspssktlqseakgdenin
MEKEAIEETETNKQedveppkddgkedekkNSPRKDNSSELEIPVTKAEKVPVLAEVEKVDNFPCTDVPAEVNNVDNTVSEEPLEILSEKKVAIEASKETPQEKPGAEAGKEDAEETVPVGTVVQEEKSAVESLPEEKPLIeavenaekekkavevaknvdeepeveavekerppaeTLPEEKPATETVESAQEDKPAVEEVEKLPEEKRAAEAVGSVQGVKPAETSaeekpaavveeaeklekeepaaTNVNVQEVIEKVNNHIKEETDDNKAKDNTAteqveeeietenvePISSTEDVGRSADSKAMAIVDEMKAKPQEPSKVIVEEFAEKFEKDNHGTKPAEKEENISAGAEPTAIEISPATNDEAQADLKEVANDSPVSGIVEKIDDERRRDGTTVIETDIAELKEEKNVKMDQVMTEEKNEKTESVIASERASSIAAQVTEKSLVEEQESRDVEMIKKKQDLPSAENERDVAEATVDVKAEETNKKAETNLESTEEAVVDGKKADPPTKEGDDTKNSKEFSAKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKGDENIN
**************************************************VPVLAEVEKVDNFPCTDVPAE***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
******************************************IPVTKAEKVPVLAEVEKVDNFPCTDVPAEVNNVDNTVSEEPLEILSEKKVAIEA***********************VGTVVQ***********EKPLIEAVENAEKEKKAVEVAKN****************************************************************************************AATNVNVQEVIEKVNNHIKEE**************************************SKAMAIVDEMKAKPQEPSKVIVEEFAEKFEKDNHGTKPAEKEENISAGAEPTAIEISPATNDEAQADLKEVANDSPVSGIVEKIDDERRRDGTTVIETDIAELKEEKNVKMD*****************ERASSIAAQVTEKSLVEEQESRDVEMIKK*******************VKAEETNKKAE*******************************************LLSKVKQSLGKVKKA**********************
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
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MEKEAIEETETNKQEDVEPPKDDGKEDEKKNSPRKDNSSELEIPVTKAEKVPVLAEVEKVDNFPCTDVPAEVNNVDNTVSEEPLEILSEKKVAIEASKETPQEKPGAEAGKEDAEETVPVGTVVQEEKSAVESLPEEKPLIEAVENAEKEKKAVEVAKNVDEEPEVEAVEKERPPAETLPEEKPATETVESAQEDKPAVEEVEKLPEEKRAAEAVGSVQGVKPAETSAEEKPAAVVEEAEKLEKEEPAATNVNVQEVIEKVNNHIKEETDDNKAKDNTATEQVEEEIETENVEPISSTEDVGRSADSKAMAIVDEMKAKPQEPSKVIVEEFAEKFEKDNHGTKPAEKEENISAGAEPTAIEISPATNDEAQADLKEVANDSPVSGIVEKIDDERRRDGTTVIETDxxxxxxxxxxxxxxxxxxxxxEKTESVIASERASSIAAQVTEKSLVEEQESRDVEMIKKKQDLPSAENERDVAEATVxxxxxxxxxxxxxxxxxxxxxVVDGKKADPPTKEGDDTKNSKEFSAKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKGDENIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
147854286 1328 hypothetical protein VITISV_026538 [Viti 0.264 0.114 0.427 1e-13
356533515 930 PREDICTED: uncharacterized protein LOC10 0.099 0.061 0.655 2e-10
356574060 752 PREDICTED: uncharacterized protein LOC10 0.099 0.075 0.655 8e-10
255543050 799 GRIP and coiled-coil domain-containing p 0.099 0.071 0.639 9e-10
224124296 757 predicted protein [Populus trichocarpa] 0.106 0.080 0.569 3e-09
357441957 1132 hypothetical protein MTR_1g084990 [Medic 0.099 0.050 0.606 2e-08
224122806 724 predicted protein [Populus trichocarpa] 0.106 0.084 0.523 3e-08
449435578 1343 PREDICTED: uncharacterized protein LOC10 0.081 0.034 0.702 6e-08
145497979 5605 hypothetical protein [Paramecium tetraur 0.698 0.071 0.207 9e-07
296089859 778 unnamed protein product [Vitis vinifera] 0.224 0.165 0.379 4e-06
>gi|147854286|emb|CAN81307.1| hypothetical protein VITISV_026538 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 108/192 (56%), Gaps = 40/192 (20%)

Query: 411 EEKNVKMDQVMTEEKNEKTESVIASERA-------SSIAAQVTEKSLVEEQESRDVEMIK 463
           ++KNVK++    E KN K E  I +E A       S+  A+V E  +  EQ SRDVE++ 
Sbjct: 785 DKKNVKIED--CEGKNTKVEESIQTETAKTDDRNGSNFVAEVAE--IDREQVSRDVEVVA 840

Query: 464 K-------KQDLPS---AENERDVAEATVDVKAEETNKKAETNLESTEEAVVDGK--KAD 511
           +       ++D+P    A+ ++D      +V A+ET K    NLES   A  DG+  K++
Sbjct: 841 EVKKLENVEEDIPLSVEADKDKDGEGKLSEVDAKETVKTNADNLES---AKTDGEIAKSN 897

Query: 512 PP----TKEGDDTKNSKEFSAKPPQ------KSSGNLLSKVKQSLGKVKKAIVGKSPSSK 561
           PP     K GDD+K S    AKPP+      K S NL+SKVKQS+ KVKKAI GKSPS K
Sbjct: 898 PPNLETLKNGDDSKTS----AKPPKQDDSVKKHSNNLISKVKQSIVKVKKAITGKSPSPK 953

Query: 562 TLQSEAKGDENI 573
            L  EAKGDE I
Sbjct: 954 ALLPEAKGDEKI 965




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533515|ref|XP_003535309.1| PREDICTED: uncharacterized protein LOC100790707 [Glycine max] Back     alignment and taxonomy information
>gi|356574060|ref|XP_003555170.1| PREDICTED: uncharacterized protein LOC100776005 [Glycine max] Back     alignment and taxonomy information
>gi|255543050|ref|XP_002512588.1| GRIP and coiled-coil domain-containing protein, putative [Ricinus communis] gi|223548549|gb|EEF50040.1| GRIP and coiled-coil domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224124296|ref|XP_002329988.1| predicted protein [Populus trichocarpa] gi|222871413|gb|EEF08544.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357441957|ref|XP_003591256.1| hypothetical protein MTR_1g084990 [Medicago truncatula] gi|355480304|gb|AES61507.1| hypothetical protein MTR_1g084990 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224122806|ref|XP_002318920.1| predicted protein [Populus trichocarpa] gi|222857296|gb|EEE94843.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449435578|ref|XP_004135572.1| PREDICTED: uncharacterized protein LOC101216708 [Cucumis sativus] Back     alignment and taxonomy information
>gi|145497979|ref|XP_001434978.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402106|emb|CAK67581.1| unnamed protein product [Paramecium tetraurelia] Back     alignment and taxonomy information
>gi|296089859|emb|CBI39678.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
TAIR|locus:2074444673 AT3G05900 "AT3G05900" [Arabido 0.653 0.557 0.271 9.3e-17
GENEDB_PFALCIPARUM|PF11_0486 2055 PF11_0486 "MAEBL, putative" [P 0.653 0.182 0.227 1.7e-12
UNIPROTKB|Q8IHP3 2055 PF11_0486 "MAEBL, putative" [P 0.653 0.182 0.227 1.7e-12
ZFIN|ZDB-GENE-041014-193 785 trdn "triadin" [Danio rerio (t 0.646 0.472 0.236 1.8e-11
DICTYBASE|DDB_G0269086937 DDB_G0269086 "alpha/beta hydro 0.806 0.494 0.217 1.3e-07
FB|FBgn0259108 5495 futsch "futsch" [Drosophila me 0.891 0.093 0.210 3.2e-10
DICTYBASE|DDB_G0294611611 DDB_G0294611 "unknown" [Dictyo 0.383 0.360 0.289 3.3e-10
ZFIN|ZDB-GENE-090313-2971128 si:dkey-27m7.4 "si:dkey-27m7.4 0.804 0.409 0.206 8.5e-10
UNIPROTKB|P120361026 NEFH "Neurofilament heavy poly 0.655 0.366 0.236 1.6e-09
UNIPROTKB|J9P0101017 NEFH "Uncharacterized protein" 0.646 0.364 0.228 2.5e-09
TAIR|locus:2074444 AT3G05900 "AT3G05900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 230 (86.0 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
 Identities = 112/413 (27%), Positives = 175/413 (42%)

Query:   185 ATETVESAQEDKPAVE-EVEKLPEEKRAAEAVGSVQGVKPAETSXXXXXXXXXXXXXXXX 243
             A ET E+ ++ K  +E ++E +  E++ +E + S +  K +E+                 
Sbjct:   270 AEETAEATEQAKVELEGKLEDVIVEEKDSE-INS-KDEKTSESGSALCSEEILSTIQESN 327

Query:   244 XXXXXXTNVNVQ---EVIEKV---NNHIKEE-TDDNKAKDNTAXXXXXXXX---XXXXXX 293
                   T  +     +VIEK      H+ +E  ++ K  +++A                 
Sbjct:   328 TDPIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPSESSAALSPEKVVPINQDSDTK 387

Query:   294 PISSTE-DVGRSADSKAMAIVDEMKAKPQEPSK-VIVEEFA-----EKFEKDNHG--TKP 344
             P   TE D    AD    AI +E K    EPSK     E       EK    N    T+P
Sbjct:   388 PKEETEGDAAAPADVIEKAITEE-KYVVDEPSKDETTSESGSALCPEKAVPTNQDLDTEP 446

Query:   345 A-EKEENISAGAE--PTAIEISPATNDEAQADLKEVANDSPVSGIVEKIDDERRRDGTTV 401
               E EE++S+ A+    AI       +E   D K   + S +S   EK+    +   T  
Sbjct:   447 KKETEEDVSSPADIIEKAITEEKHVVEEPSKDEKTSESGSALSP--EKVVPTNQDSDTEP 504

Query:   402 IETDIAELKEEKNVKMDQVMTEEKNEKTESVIASERASSIAAQVTEKSLVEEQESRDVEM 461
              +    ++    +V +++ +T+EK+   E +   +   S A  V  K   E+      E 
Sbjct:   505 KKETEGDVPSPADV-IEKAITDEKHVVEEPLKDEQENVSEAKDVVTKLAAED------EN 557

Query:   462 IKKKQDLPSAENERDVAEATVDVKAEETNKKAETNLESTEEAVVDGKKADPPTKEGDDTK 521
             IKK  D P AE + +      D ++ E    A    E   E V +  +  P  KE D+ K
Sbjct:   558 IKKDTDTPVAEGKSEETLKETDTESVEKEAAANKQEEPITEKVAEVVETAPVAKEIDEAK 617

Query:   522 NSKEFSAKP-P--QKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKGDE 571
                E + K  P  QK S +++SKVKQSL K KKAI+G+SPSSKT+ +E   +E
Sbjct:   618 QQPEVTTKEAPAKQKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTEEPKEE 670


GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-193 trdn "triadin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269086 DDB_G0269086 "alpha/beta hydrolase fold-1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0259108 futsch "futsch" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0294611 DDB_G0294611 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090313-297 si:dkey-27m7.4 "si:dkey-27m7.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P12036 NEFH "Neurofilament heavy polypeptide" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P010 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_1310019
hypothetical protein (757 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-06
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 3e-05
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 5e-05
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 1e-04
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 6e-04
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 7e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 0.001
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 0.002
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
 Score = 50.9 bits (121), Expect = 2e-06
 Identities = 103/510 (20%), Positives = 195/510 (38%), Gaps = 14/510 (2%)

Query: 8    ETETNKQEDVEPPKDDGKEDEKKNSPRKDNSSELEIPVTKAEKVPVLAEVEKVDNFPCTD 67
            E E N +E  +  +       ++ +  K   +     + KAE+     E +K +     D
Sbjct: 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305

Query: 68   VPAEVNNVDNTVSEEPLEILSEKKVAIEASKETPQEKPGAEAGKEDAEETVPVGTVVQEE 127
               +         E   +    KK A  A K+  + K  AEA K +AE         +E+
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365

Query: 128  KSAVESLPEE--KPLIEAVENAEKEKKAVEVAKNVDEEPE-VEAVEKERPPAETLPEEKP 184
              A E   EE  K    A + AE++KKA E  K  +E+ +  + ++K     +   E K 
Sbjct: 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425

Query: 185  ATETVESAQEDKPAVEEVEKLPEEKRAAEAVGSVQGVKPAETSAEEKPAAVVEEAEKLEK 244
              E  + A E K   EE +K  E K+ AE     +  + A+  AEE   A   + +  E 
Sbjct: 1426 KAEEKKKADEAKKKAEEAKKADEAKKKAE---EAKKAEEAKKKAEEAKKADEAKKKAEEA 1482

Query: 245  EEPAATNVNVQEVIEKVNNHIKEETDDNKAKDNTATEQVEEEIETENVEPISSTEDVGRS 304
            ++        +E  +K +   K      KA +    E+ ++  E +  E     ++  ++
Sbjct: 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542

Query: 305  ADSKAMAIVDEMKAKPQEPSKVIVEEFAEKFEKDNHGTKPAEKEENISAGAEPTAIEISP 364
             + K    + + +   +   K   EE  +  E  N   + AE+ +          +++  
Sbjct: 1543 EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602

Query: 365  ATNDEAQADLKEVANDSPVSGIVEKIDDERRRDGTTVIETDIAELKEEKNVKMDQVMTEE 424
                    + K+       +  ++K ++E+++      +    + K E+  K ++    +
Sbjct: 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662

Query: 425  KNEKTESVIASER-ASSIAAQVTEKSLVEEQESRDVEMIKKKQDLPSAENER-------D 476
              E+ +     ++ A        ++    E   ++ E  KK ++L   E E         
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722

Query: 477  VAEATVDVKAEETNKKAETNLESTEEAVVD 506
             AE    +KAEE  K+AE + +  EEA  D
Sbjct: 1723 KAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752


Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 3e-07
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 3e-06
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 4e-06
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 5e-06
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 5e-04
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 71.8 bits (175), Expect = 3e-13
 Identities = 95/619 (15%), Positives = 181/619 (29%), Gaps = 212/619 (34%)

Query: 51  VPVLAEVEKVDNFPCTDVPAEVNNVDNTVSEEPLEILSEKKVAIEASKETPQEKPGAEAG 110
           + V  +   VDNF C DV            + P  ILS                      
Sbjct: 22  LSVFED-AFVDNFDCKDVQ-----------DMPKSILS---------------------- 47

Query: 111 KEDAEETVPVGTVVQEEKSAVESLPEEKPLIEAVENAEKE--KKAVEVAKNVDEEPEVEA 168
           KE+ +  +         K AV        L   + + ++E  +K VE    ++ +  +  
Sbjct: 48  KEEIDHII-------MSKDAVSGT---LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 169 VEKE-RPPAETLPEEKPATETVESAQEDKPAV--------EEVEKLPE---EKRAAEAVG 216
           ++ E R P+      +   E  +    D            +   KL +   E R A+ V 
Sbjct: 98  IKTEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 217 SVQGV----KPAETSAEEKPAAVVEEAEKLEKEEPAA------TNVN-VQEVIEKVNN-H 264
            + GV    K   T      A  V  + K++ +           N N  + V+E +    
Sbjct: 155 -IDGVLGSGK---TWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 265 IKEETDDNKAKDNTATEQVE-EEIETENVEPISSTE---------DVGRSADSKAM---- 310
            + + +     D+++  ++    I+ E    + S           +V  +    A     
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 311 ---------AIVDEMKAKPQEPSKVIVEEFAEKFEKDNHGTKPAEKEENISAGAEPTAIE 361
                     + D + A     + + ++  +     D       E +  +        ++
Sbjct: 267 KILLTTRFKQVTDFLSA--ATTTHISLDHHSMTLTPD-------EVKS-LLL----KYLD 312

Query: 362 ISPATNDEAQADLKEVAND-SP--VSGIVEKIDDERRR-DG---------TTVIETDIAE 408
             P        DL       +P  +S I E I D     D          TT+IE+ +  
Sbjct: 313 CRP-------QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 409 LKEE-------------KNVK-MDQVM----TEEKNEKTESVIASERASSIAAQVTEKSL 450
           L+                +      ++     +                 +  ++ + SL
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---------VVVNKLHKYSL 416

Query: 451 VEEQ--ESR----DVEMIKKKQDLPSAENERDVAEATVDVKAEETNKKAETNLESTEEAV 504
           VE+Q  ES      + +  K +     ENE  +  + VD       K  +++        
Sbjct: 417 VEKQPKESTISIPSIYLELKVK----LENEYALHRSIVD--HYNIPKTFDSDDLIPPY-- 468

Query: 505 VDG----------KKADPPTKEGDDTKNSKEFS----------AK-----PPQKSSGNLL 539
           +D           K  +         +    F            K         +SG++L
Sbjct: 469 LDQYFYSHIGHHLKNIEH-------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 540 SKVKQSLGKVKKAIVGKSP 558
           + ++Q L   K  I    P
Sbjct: 522 NTLQQ-LKFYKPYICDNDP 539


>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Length = 503 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00