Citrus Sinensis ID: 041854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MGAAETEIIRIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSRRHAIAYRRAPVGVHPFENF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccccccccccccEEEEccccHHHHHcccccccccEEccccccccccEEEEccccccccccccccccEEEEEcccHHHHHHHHHHHcccccccccccccccccHHHHHHcccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHcHcccccccccccccccEEEEccccHHHHHcccccccEEEEEcccccccccEEEEEEEcccccccccccccEEEEEEccHHHHHHHHHHHccccccccccccccccHHHHHHHcccEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MGAAETEIIRIKReeckrtkhdahfskwkILVGAsdwadyllgkegadryrvhnlpstsgpgvyelgivasrsrtdridsddVVVVYLGQADSVRTRLQcygrsgahlnnnpsngsgcfddiFSRRHAIayrrapvgvhpfenf
Flexible Loop (DISEMBL)
mgaaeteiirikreeckrtkhdahfskwkilvgaSDWADYLLGKEGADRYRvhnlpstsgpgvyELGIVAsrsrtdridsddVVVVYLGQADSVRTRLQCYGRsgahlnnnpsngSGCFDDIFSRRHAIAYRrapvgvhpfenf
Low Complexity Region (SEG)
MGAAETEIIRIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVAsrsrtdridsddvvvvYLGQADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSRRHAIAYRRAPVGVHPFENF
Disordered region (IsUnstruct)
********IRIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLN*****GSGCFDDIFSRRHAIAYRRAPVGV******
Disordered Region (DISOPRED)
*************EECKRTKHDAHFSKWKILVGASDWAD*LL******RYRVHNLPSTSGPGVYELGIVA********DSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSRRHAIAYRRAPVGVHPF***
Disordered Region (DISEMBL)
MGAAETEIIRIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSRRHAIAYRRAPVGVHPFENF
Disordered Region (DISPRO)
*************EECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSRRHAIAYRRAPVGVHPFENF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGAAETEIIRIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSRRHAIAYRRAPVGVHPFENF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
224091306	689	predicted protein [Populus trichocarpa]	0.881	0.184	0.6	3e-40
449435840	478	PREDICTED: uncharacterized protein LOC10	0.930	0.280	0.570	1e-39
255546179	499	conserved hypothetical protein [Ricinus	0.944	0.272	0.550	3e-39
225444967	491	PREDICTED: uncharacterized protein LOC10	0.944	0.276	0.535	2e-34
297738689	560	unnamed protein product [Vitis vinifera]	0.944	0.242	0.535	2e-34
2104685	377	transcripteion factor [Vicia faba var. m	0.875	0.334	0.573	2e-34
357501273	368	Transcripteion factor [Medicago truncatu	0.875	0.342	0.561	5e-34
297796565	485	hypothetical protein ARALYDRAFT_918835 [	0.875	0.259	0.524	1e-32
242050714	548	hypothetical protein SORBIDRAFT_02g03786	0.861	0.226	0.524	7e-31
323388729	538	HRT transcription factor [Zea mays]	0.861	0.230	0.517	9e-31

>gi|224091306|ref|XP_002309221.1| predicted protein [Populus trichocarpa] gi|222855197|gb|EEE92744.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 102/145 (70%), Gaps = 18/145 (12%)

Query: 10  RIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIV 69
           R+KRE+ KRTKHD+ FSKW++L+G SDW DY LGKEGA RYR+HNLP+TSGPG+YELGI 
Sbjct: 6   RLKREDYKRTKHDSSFSKWQLLIGPSDWQDYFLGKEGASRYRIHNLPTTSGPGLYELGIA 65

Query: 70  ASRSRTDRID-----SDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSNGS-------- 116
             RS   R D      DD+VVVYLGQAD+VRTRLQ YGRSGAHL N  S G         
Sbjct: 66  VPRSGLSRRDVGKLVRDDIVVVYLGQADNVRTRLQQYGRSGAHLGNTYSTGHVNDSKDDS 125

Query: 117 -----GCFDDIFSRRHAIAYRRAPV 136
                G F++IFSR  +I YR AP+
Sbjct: 126 LQKGLGLFEEIFSRGQSIVYRWAPM 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435840|ref|XP_004135702.1| PREDICTED: uncharacterized protein LOC101208130 [Cucumis sativus] gi|449522410|ref|XP_004168219.1| PREDICTED: uncharacterized protein LOC101231195 [Cucumis sativus]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/149 (57%), Positives = 104/149 (69%), Gaps = 15/149 (10%)

Query: 3   AAETEIIRIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPG 62
            AE   IR+KRE+CKRTKHD+ FSKW+ILV +SDW DY LGKEGA+RYR+HNLP  SGPG
Sbjct: 2   VAELSPIRLKREDCKRTKHDSDFSKWEILVASSDWEDYSLGKEGAERYRIHNLPKVSGPG 61

Query: 63  VYELGIVASRSRTDR----IDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNN-------- 110
           +YELGI  S S   R    +D+D +VVVYLG+AD+VRTRLQ YGRSG+HL N        
Sbjct: 62  LYELGITVSSSGLGREIAKLDADWIVVVYLGEADNVRTRLQHYGRSGSHLGNAYFCVVDC 121

Query: 111 ---NPSNGSGCFDDIFSRRHAIAYRRAPV 136
                  G   F ++FSR ++I YR AP+
Sbjct: 122 KVFPLEKGPSLFQEMFSRGYSIVYRWAPM 150

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546179|ref|XP_002514149.1| conserved hypothetical protein [Ricinus communis] gi|223546605|gb|EEF48103.1| conserved hypothetical protein [Ricinus communis]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 105/158 (66%), Gaps = 22/158 (13%)

Query: 1   MGAAETEII-----RIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNL 55
           M A+E   +     R+KRE+ KRTKHD HFSKW+ILVG  DW DY  GKEGA RYRVHNL
Sbjct: 1   MAASENSSVPAAASRLKREDYKRTKHDTHFSKWQILVGPCDWEDYSQGKEGATRYRVHNL 60

Query: 56  PSTSGPGVYELGIVASRS----RTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLN-- 109
           P+ S PG+YELGI  SRS       +ID DD+ VVYLGQAD+VR+RLQ YGRSG+HL   
Sbjct: 61  PTRSYPGLYELGIAVSRSGLGREVGKIDPDDIAVVYLGQADNVRSRLQHYGRSGSHLGAS 120

Query: 110 -----------NNPSNGSGCFDDIFSRRHAIAYRRAPV 136
                       +P  G G F++IF R H+IA+R AP+
Sbjct: 121 YATSHWNDSKIESPQKGPGLFEEIFLRGHSIAFRWAPM 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444967|ref|XP_002279809.1| PREDICTED: uncharacterized protein LOC100264589 [Vitis vinifera]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/155 (53%), Positives = 102/155 (65%), Gaps = 19/155 (12%)

Query: 1   MGAAETEII-RIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLP-ST 58
           M   E  I+ R+KRE+CKRTKHD+ F+KWKILVG SDW D+   KEGA+RYRVHNLP   
Sbjct: 1   MVTTEPPIVSRLKREDCKRTKHDSEFTKWKILVGPSDWEDHSSRKEGAERYRVHNLPLCC 60

Query: 59  SGPGVYELGIVASRS----RTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHL-----N 109
             PGVYELGI  S +       ++D   +VVVYLGQA+ +R RLQ YGRSGAHL      
Sbjct: 61  HCPGVYELGISVSPTGLGREVGKLDPAHIVVVYLGQAEDIRARLQHYGRSGAHLAKVDST 120

Query: 110 NNPSN--------GSGCFDDIFSRRHAIAYRRAPV 136
            NP+N        GSG F+ IFSR ++I +R AP+
Sbjct: 121 GNPNNCKNMPLQRGSGLFEGIFSRGYSIVFRWAPI 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738689|emb|CBI27934.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/155 (53%), Positives = 102/155 (65%), Gaps = 19/155 (12%)

Query: 1   MGAAETEII-RIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLP-ST 58
           M   E  I+ R+KRE+CKRTKHD+ F+KWKILVG SDW D+   KEGA+RYRVHNLP   
Sbjct: 1   MVTTEPPIVSRLKREDCKRTKHDSEFTKWKILVGPSDWEDHSSRKEGAERYRVHNLPLCC 60

Query: 59  SGPGVYELGIVASRS----RTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHL-----N 109
             PGVYELGI  S +       ++D   +VVVYLGQA+ +R RLQ YGRSGAHL      
Sbjct: 61  HCPGVYELGISVSPTGLGREVGKLDPAHIVVVYLGQAEDIRARLQHYGRSGAHLAKVDST 120

Query: 110 NNPSN--------GSGCFDDIFSRRHAIAYRRAPV 136
            NP+N        GSG F+ IFSR ++I +R AP+
Sbjct: 121 GNPNNCKNMPLQRGSGLFEGIFSRGYSIVFRWAPI 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2104685|emb|CAA66483.1| transcripteion factor [Vicia faba var. minor]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 90/136 (66%), Gaps = 10/136 (7%)

Query: 11  IKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVA 70
           +KREECK TKHD+ FS WKIL+G SDW DY  GKEG+ RYR+ NLP  SGPGVYELG+  
Sbjct: 10  LKREECKHTKHDSSFSHWKILIGPSDWEDYSKGKEGSTRYRIQNLPQNSGPGVYELGVAM 69

Query: 71  SRSRTDR---IDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSN-------GSGCFD 120
           S S   R     +  VVVVYLG+AD+VRTRLQ YGR+GAHL N  S        G   F 
Sbjct: 70  STSGLGREIYKLATRVVVVYLGKADNVRTRLQSYGRNGAHLGNGCSTFESSEEKGHSLFH 129

Query: 121 DIFSRRHAIAYRRAPV 136
           DIF +   I YR AP+
Sbjct: 130 DIFFQSFPIVYRWAPM 145

Source: Vicia faba var. minor

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501273|ref|XP_003620925.1| Transcripteion factor [Medicago truncatula] gi|355495940|gb|AES77143.1| Transcripteion factor [Medicago truncatula]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 92/139 (66%), Gaps = 13/139 (9%)

Query: 11  IKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIVA 70
           +KRE+C  TKHD+ FS WKIL+G SDW DY  GKEG+ RYR+HNLP  SGPGVYELG+ A
Sbjct: 2   LKREQCDYTKHDSSFSHWKILIGPSDWEDYSKGKEGSTRYRIHNLPENSGPGVYELGVAA 61

Query: 71  SRSRTDR------IDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSN-------GSG 117
           S S   R       DS  VVVVYLG+ D+VRTRLQCYGR+GAHL N  S+       G  
Sbjct: 62  STSGLGREIYKLSTDSCRVVVVYLGKGDNVRTRLQCYGRNGAHLGNGCSSFESSHQKGHS 121

Query: 118 CFDDIFSRRHAIAYRRAPV 136
            F +IF +   I YR A +
Sbjct: 122 LFHEIFLQGFPIVYRWASM 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796565|ref|XP_002866167.1| hypothetical protein ARALYDRAFT_918835 [Arabidopsis lyrata subsp. lyrata] gi|297312002|gb|EFH42426.1| hypothetical protein ARALYDRAFT_918835 [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 98/141 (69%), Gaps = 15/141 (10%)

Query: 11  IKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGI-V 69
            KRE  KRTKHDA FSKW++L+G++DW D+  GK+G  RYRVHNLP  S PG+YELG+ V
Sbjct: 16  FKRENYKRTKHDAVFSKWQVLIGSNDWEDFQTGKDGVGRYRVHNLPRKSCPGLYELGVAV 75

Query: 70  ASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNN-----------NPSNGS-- 116
             + +  +++SDDV+  YLGQA+SVR+RLQ YGRSGAHL N           +P   +  
Sbjct: 76  IGQDQGRKLESDDVLAAYLGQAESVRSRLQRYGRSGAHLRNVNNLNDCETIESPVKKAVT 135

Query: 117 -GCFDDIFSRRHAIAYRRAPV 136
            G F+DIFS++ +I YR AP+
Sbjct: 136 GGLFEDIFSKQGSILYRWAPM 156

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050714|ref|XP_002463101.1| hypothetical protein SORBIDRAFT_02g037860 [Sorghum bicolor] gi|241926478|gb|EER99622.1| hypothetical protein SORBIDRAFT_02g037860 [Sorghum bicolor]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 93/141 (65%), Gaps = 17/141 (12%)

Query: 10  RIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIV 69
           R+KRE+C RTKHD+ FS WK+LVG SDW D+  GKEG  RYR+ NLP  + PG+YELG+ 
Sbjct: 11  RLKREDCPRTKHDSLFSPWKVLVGPSDWKDHAAGKEGVQRYRIRNLPD-NFPGLYELGVA 69

Query: 70  ASRS---RTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLNNNPSNGS---------- 116
            +     RT R D+  VVVVYLGQADSVR RLQ YGRSG+HL+   S GS          
Sbjct: 70  GAADEGVRTRRRDARGVVVVYLGQADSVRARLQQYGRSGSHLDTANSLGSAGKDAVNALA 129

Query: 117 ---GCFDDIFSRRHAIAYRRA 134
              G F ++FSR +++ +R A
Sbjct: 130 AGPGLFREVFSRGYSVVFRCA 150

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323388729|gb|ADX60169.1| HRT transcription factor [Zea mays]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/141 (51%), Positives = 95/141 (67%), Gaps = 17/141 (12%)

Query: 10  RIKREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGIV 69
           R+KRE+C RTKHD+ FS WK+LVG SDW D+  GKEG  RYR+ NLP  + PG+YELG+ 
Sbjct: 11  RLKREDCPRTKHDSLFSPWKVLVGPSDWRDHAAGKEGVQRYRIRNLPD-NFPGLYELGVA 69

Query: 70  ASRS---RTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAHLN--NNP-----------S 113
            +     R+ R D+  VVVVYLGQADSVR RLQ YGRSG+HL+  N+P           +
Sbjct: 70  CAADEGVRSRRRDARGVVVVYLGQADSVRARLQQYGRSGSHLDTTNSPGSSDRDAANALA 129

Query: 114 NGSGCFDDIFSRRHAIAYRRA 134
            G G F ++FSR +++ +R A
Sbjct: 130 EGPGLFREVFSRGYSVVFRCA 150

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2165026	483	ET2 "AT5G56780" [Arabidopsis t	0.875	0.260	0.5	5.2e-28
TAIR|locus:2165011	254	AT5G56770 "AT5G56770" [Arabido	0.819	0.464	0.404	1.2e-17

TAIR|locus:2165026 ET2 "AT5G56780" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 5.2e-28, P = 5.2e-28
 Identities = 70/140 (50%), Positives = 86/140 (61%)

Query:    12 KREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGI-VA 70
             KRE+ KRTKHD  FSKW++L+G++DW D+  GK+G  RYRV NLP  S PG+YELG+ V 
Sbjct:    17 KREDYKRTKHDTVFSKWQVLIGSNDWEDFKNGKDGVGRYRVQNLPRKSCPGLYELGVAVI 76

Query:    71 XXXXXXXXXXXXXXXXYLGQADSVRTRLQCYGRSGAHLNN-NPSNG------------SG 117
                             YLGQA+SVR+RLQ YGRSGAHL N N  N              G
Sbjct:    77 GQEQCRKLEPDIVLASYLGQAESVRSRLQRYGRSGAHLRNVNNLNDCETIESPVKAVTGG 136

Query:   118 CFDDIFSRRHAIAYRRAPVG 137
              F+DIFS+  +I YR AP+G
Sbjct:   137 LFEDIFSKGGSILYRWAPMG 156

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165011 AT5G56770 "AT5G56770" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 51/126 (40%), Positives = 68/126 (53%)

Query:    12 KREECKRTKHDAHFSKWKILVGASDWADYLLGKEGADRYRVHNLPSTSGPGVYELGI--V 69
             KRE+ K T HD  FSKW+ L+  +DW D+   KE   RYR  +LP     G+YELG+  +
Sbjct:    56 KREDYKLTIHDIAFSKWRNLIRHNDWKDFNNRKERVRRYRHEDLPPQRCTGLYELGVGVI 115

Query:    70 AXXXXXXXXXXXXXXXXYLGQADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSRRHAI 129
                              Y+GQ   V++RLQ YGR G HL   PS   G ++DIFS  +++
Sbjct:   116 GQDQGQNFDPDNNVLGVYVGQCVDVKSRLQDYGRRGGHL---PS---GLYEDIFSEGYSV 169

Query:   130 AYRRAP 135
              YR AP
Sbjct:   170 FYRWAP 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       128   0.00091  102 3  11 22  0.39    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.05u 0.11s 11.16t   Elapsed:  00:00:01
  Total cpu time:  11.05u 0.11s 11.16t   Elapsed:  00:00:01
  Start:  Sat May 11 08:28:16 2013   End:  Sat May 11 08:28:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI000973 hypothetical protein (689 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PRK10545	286	nucleotide excision repair endonuclease; Provision	95.53
smart00465	84	GIYc GIY-YIG type nucleases (URI domain).	94.21
PRK07883	557	hypothetical protein; Validated	93.38
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	93.23
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	92.99
PHA02598	138	denA endonuclease II; Provisional	92.69
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	92.41
PF01541	80	GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR00	92.28
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	91.74
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	91.7
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	91.6
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	91.46
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	91.44
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	91.41
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	90.91
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	83.17

>PRK10545 nucleotide excision repair endonuclease; Provisional

Probab=95.53  E-value=0.011  Score=50.35  Aligned_cols=40  Identities=30%  Similarity=0.615  Sum_probs=29.8

Q ss_pred             eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854           52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS  104 (144)
Q Consensus        52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~  104 (144)
                      +.+||.  .||||=.=           +.++-+++|+|+|.|+|+|+.+|=++
T Consensus        28 l~~LP~--~PGVYlf~-----------d~~g~~~LYVGKAknLR~RV~syF~~   67 (286)
T PRK10545         28 LEDLPK--LPGVYLFH-----------GESDTMPLYIGKSVNIRSRVLSHLRT   67 (286)
T ss_pred             HHhCCC--CCeEEEEE-----------cCCCCEEEEEechHhHHHHHHHHcCc
Confidence            567775  58888541           12355789999999999999999753

>smart00465 GIYc GIY-YIG type nucleases (URI domain)

Probab=94.21  E-value=0.067  Score=34.24  Aligned_cols=46  Identities=17%  Similarity=0.231  Sum_probs=33.0

Q ss_pred             EEEeccchhhHHHHHHhhCCCCCCCCCCCCCCCCchHHHhhccceeEEEeccC
Q 041854           84 VVVYLGQADSVRTRLQCYGRSGAHLNNNPSNGSGCFDDIFSRRHAIAYRRAPV  136 (144)
Q Consensus        84 vvVYlGqaenVR~RLq~YGr~GaHL~~~~~~g~~LF~eiFs~g~si~~RwA~m  136 (144)
                      -++|+|++.|+++|+++|-....       +...+-..+...|.++.+.++..
T Consensus        13 ~~~YVG~t~nl~~R~~~h~~~~~-------~~~~~~~~~~~~~~~f~~~~~~~   58 (84)
T smart00465       13 GKLYVGKAKNLRNRLKRHFSGSR-------KGRLLIDALLKYGGNFEFIILES   58 (84)
T ss_pred             CEEEEEEccCHHHHHHHHHhCCC-------CChHHHHHHHHhcCCeEEEEeec
Confidence            47899999999999999875544       23456666677776655555543

>PRK07883 hypothetical protein; Validated

Probab=93.38  E-value=0.047  Score=49.63  Aligned_cols=43  Identities=33%  Similarity=0.590  Sum_probs=31.7

Q ss_pred             cceeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCC
Q 041854           49 RYRVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSG  105 (144)
Q Consensus        49 RYRv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~G  105 (144)
                      |=.+.+||.  .||+|=.=           +.++ -|+|+|+|-|+|+|+.+|=+..
T Consensus       208 ~~~~~~lP~--~PGVY~~~-----------d~~g-~viYVGKAknLr~Rv~sYF~~~  250 (557)
T PRK07883        208 RHLADGLPH--APGVYLFR-----------GPSG-EVLYVGTAVNLRRRVRSYFTAA  250 (557)
T ss_pred             hHHHhhCCC--CceEEEEE-----------CCCC-cEEEeehhhhHHHHHHHHcCCC
Confidence            445677875  58998651           1122 3899999999999999998754

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=93.23  E-value=0.063  Score=49.54  Aligned_cols=38  Identities=37%  Similarity=0.760  Sum_probs=29.5

Q ss_pred             eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCC
Q 041854           51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGR  103 (144)
Q Consensus        51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr  103 (144)
                      .+.+||.  -||+|=.-           + .+ -|+|+|.|-|+|+|+.+|=+
T Consensus         9 k~~~LP~--~PGVYl~~-----------d-~g-~viYVGKAknLr~RV~sYF~   46 (577)
T PRK14668          9 RAAELPR--EPGVYQFV-----------A-GG-TVLYVGKAVDLRDRVRSYAD   46 (577)
T ss_pred             HHHhCCC--CCEEEEEc-----------C-CC-eEEEeeCcHhHHHHHHHHcC
Confidence            4678886  59999752           1 23 47999999999999999953

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=92.99  E-value=0.066  Score=49.84  Aligned_cols=42  Identities=38%  Similarity=0.751  Sum_probs=32.3

Q ss_pred             eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCCCC
Q 041854           52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGAH  107 (144)
Q Consensus        52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~GaH  107 (144)
                      +.+||.  .||+|-.-           + .+=.|+|+|.|-|+|+|+++|-+...+
T Consensus         9 l~~lP~--~PGvY~~~-----------d-~~g~VlYVGKAknLr~Rv~sYF~~~~~   50 (581)
T COG0322           9 LKNLPH--SPGVYLMK-----------D-ENGTVLYVGKAKNLRKRVSSYFRGRLD   50 (581)
T ss_pred             HHhCCC--CCeeEEEE-----------C-CCCCEEEEeehhhHHHHHHHhhcCCCc
Confidence            667776  48888542           1 123689999999999999999987666

>PHA02598 denA endonuclease II; Provisional

Probab=92.69  E-value=0.085  Score=41.87  Aligned_cols=23  Identities=30%  Similarity=0.635  Sum_probs=19.8

Q ss_pred             eEEEeccchhhHHHHHHhhCCCC
Q 041854           83 VVVVYLGQADSVRTRLQCYGRSG  105 (144)
Q Consensus        83 VvvVYlGqaenVR~RLq~YGr~G  105 (144)
                      =.|+|+|+|.|+|+|+.+|=+++
T Consensus        43 ~~viYVGKAknLkkRv~sYf~~~   65 (138)
T PHA02598         43 DELVYIGKTKNLRKRIDYYRNSK   65 (138)
T ss_pred             CeEEEEeehhhHHHHHHHHhCcc
Confidence            37899999999999999995544

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=92.41  E-value=0.068  Score=49.27  Aligned_cols=41  Identities=34%  Similarity=0.843  Sum_probs=30.1

Q ss_pred             eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCC
Q 041854           51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSG  105 (144)
Q Consensus        51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~G  105 (144)
                      .+.+||..  ||+|=.=           +.++ -|+|+|.|-|+|+|+.+|=+..
T Consensus         7 ~l~~lP~~--PGVY~~~-----------d~~g-~viYVGKAknLr~Rv~sYF~~~   47 (598)
T PRK00558          7 KLKTLPDS--PGVYRMK-----------DANG-TVIYVGKAKNLKNRVRSYFRKS   47 (598)
T ss_pred             HHhhCCCC--CeEEEEE-----------CCCC-CEEEecCchhHHHHHHhhCCCC
Confidence            35678774  8998651           1122 3699999999999999998753

>PF01541 GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR000305 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=92.28  E-value=0.081  Score=33.92  Aligned_cols=18  Identities=22%  Similarity=0.517  Sum_probs=16.0

Q ss_pred             EEEeccchhhHHHHHHhh
Q 041854           84 VVVYLGQADSVRTRLQCY  101 (144)
Q Consensus        84 vvVYlGqaenVR~RLq~Y  101 (144)
                      -.+|+|++.|++.||.++
T Consensus        13 ~~~YIG~t~nl~~R~~~H   30 (80)
T PF01541_consen   13 KKIYIGSTKNLKKRLNEH   30 (80)
T ss_dssp             EEEEEEEESSHHHHHHHH
T ss_pred             CEEEEEEECCHHHHHHHH
Confidence            356999999999999887

The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. It is found in the amino terminal region of excinuclease abc subunit c (uvrC), Bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage.; GO: 0004518 nuclease activity, 0006281 DNA repair, 0005622 intracellular; PDB: 1YWL_A 1YD6_D 1YD5_A 1YD1_A 1YCZ_A 1YD0_A 1YD3_A 1YD4_A 1YD2_A 1LN0_A ....

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=91.74  E-value=0.1  Score=49.82  Aligned_cols=39  Identities=33%  Similarity=0.653  Sum_probs=29.2

Q ss_pred             eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854           52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS  104 (144)
Q Consensus        52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~  104 (144)
                      +.+||.  -||+|=.=           +. +=-|+|+|+|-|+|+|+.+|=+.
T Consensus         6 l~~LP~--~PGVYlfk-----------D~-~G~VIYVGKAKNLR~RV~SYF~~   44 (694)
T PRK14666          6 LSTIPL--TPGVYLYK-----------DE-AGRIIYVGKARHLRRRVASYFRD   44 (694)
T ss_pred             HhhCCC--CCeEEEEE-----------CC-CCCEEEeeCcHhHHHHHHHHcCC
Confidence            667885  48998651           11 22369999999999999999763

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=91.70  E-value=0.13  Score=47.04  Aligned_cols=39  Identities=26%  Similarity=0.685  Sum_probs=29.3

Q ss_pred             eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854           52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS  104 (144)
Q Consensus        52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~  104 (144)
                      +.+||.  .||+|-.=           +. +=-|+|+|.|-|+|+|+.+|=+.
T Consensus         4 l~~lP~--~PGVYl~~-----------d~-~g~vIYVGKAknLr~RV~sYF~~   42 (519)
T PRK12306          4 LSTIPT--NPGCYLYK-----------DE-EGTIIYVGKAKNLKKRVSSYFQK   42 (519)
T ss_pred             hhHCCC--CCeEEEEE-----------CC-CCCEEEeccchhHHHHHHHhCCC
Confidence            567886  48998651           11 22369999999999999999774

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=91.60  E-value=0.1  Score=48.84  Aligned_cols=42  Identities=31%  Similarity=0.687  Sum_probs=31.1

Q ss_pred             eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCCC
Q 041854           51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGA  106 (144)
Q Consensus        51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~Ga  106 (144)
                      .+.+||.  -||+|=.=           +. +=-|+|+|.|-|+|+|+.+|=+...
T Consensus         6 kl~~lP~--~PGVYl~~-----------d~-~g~viYVGKAknLr~RV~sYF~~~~   47 (624)
T PRK14669          6 KIRTLPT--SPGVYLYK-----------NA-GGEVIYVGKAKNLRSRVRSYFSEDK   47 (624)
T ss_pred             HHHhCCC--CCeEEEEE-----------CC-CCCEEEeeCchhHHHHHHHHhccCc
Confidence            3677885  59998661           11 2237999999999999999987553

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=91.46  E-value=0.16  Score=46.99  Aligned_cols=38  Identities=26%  Similarity=0.535  Sum_probs=30.2

Q ss_pred             eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854           52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS  104 (144)
Q Consensus        52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~  104 (144)
                      +.+||.  .||+|-.= .            +=-|+|+|.|-|+|+|+.+|=+.
T Consensus        10 l~~lP~--~PGVYl~~-~------------~g~viYVGKAknLr~RV~sYF~~   47 (567)
T PRK14667         10 IEKAPE--EPGVYLFK-K------------KKRYIYIGKAKNIKNRLLQHYKQ   47 (567)
T ss_pred             HHhCCC--CCeEEEEe-c------------CCeEEEeeCcHhHHHHHHHHcCC
Confidence            567885  59999663 1            23589999999999999999874

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=91.44  E-value=0.12  Score=47.79  Aligned_cols=39  Identities=36%  Similarity=0.761  Sum_probs=29.1

Q ss_pred             eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854           52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS  104 (144)
Q Consensus        52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~  104 (144)
                      +.+||.  .||+|=.=           +..+ -|+|+|.|-|+|+|+.+|=+.
T Consensus         5 l~~lP~--~PGVYl~~-----------d~~g-~viYVGKAknLr~Rv~sYF~~   43 (574)
T TIGR00194         5 LKNLPD--KPGCYLMK-----------DRNG-QVLYVGKAKNLKKRVSSYFRE   43 (574)
T ss_pred             HhhCCC--CCeEEEEE-----------CCCC-CEEEEecHHHHHHHHHHhcCC
Confidence            567775  58998641           2222 259999999999999999875

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=91.41  E-value=0.12  Score=48.16  Aligned_cols=42  Identities=33%  Similarity=0.780  Sum_probs=31.2

Q ss_pred             eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCCC
Q 041854           51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSGA  106 (144)
Q Consensus        51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~Ga  106 (144)
                      .+.+||.  .||+|=.=           +.++ -|+|+|.|-|+|+|+.+|=+...
T Consensus        15 ~l~~lP~--~PGVYl~~-----------d~~g-~viYVGKAknLr~RV~sYF~~~~   56 (621)
T PRK14671         15 KLASLPT--SPGVYQFK-----------NAAG-RVIYVGKAKNLRNRVRSYFRNSR   56 (621)
T ss_pred             HHHhCCC--CCeEEEEE-----------CCCC-CEEEeecchhHHHHHHHHcCCCC
Confidence            4778886  59998651           1112 35999999999999999987544

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=90.91  E-value=0.13  Score=49.21  Aligned_cols=40  Identities=43%  Similarity=0.620  Sum_probs=30.2

Q ss_pred             eeecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854           51 RVHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS  104 (144)
Q Consensus        51 Rv~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~  104 (144)
                      .+.+||.  .||+|=.=            -.+=-|+|+|.|-|+|+|+.+|=+.
T Consensus        14 ~~~~LP~--~PGVYlfk------------d~~G~VLYVGKAKNLR~RV~SYF~~   53 (691)
T PRK14672         14 QALSAPS--TSGVYLWK------------DVHGVVIYVGKAKSLRTRLTSYFRC   53 (691)
T ss_pred             HHHhCCC--CCeEEEEE------------CCCCCEEEeeCcHHHHHHHHHHcCC
Confidence            3567885  59998651            1123479999999999999999874

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=83.17  E-value=0.75  Score=42.81  Aligned_cols=21  Identities=29%  Similarity=0.643  Sum_probs=19.0

Q ss_pred             EEEeccchhhHHHHHHhhCCC
Q 041854           84 VVVYLGQADSVRTRLQCYGRS  104 (144)
Q Consensus        84 vvVYlGqaenVR~RLq~YGr~  104 (144)
                      -|+|+|.|-|+|+|+.+|=+.
T Consensus         7 ~vIYVGKAknLr~RV~sYF~~   27 (574)
T PRK14670          7 KILYIGKAKNLRSRVKNYFLE   27 (574)
T ss_pred             CEEEeeCcHhHHHHHHHHcCC
Confidence            378999999999999999874

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
1yd0_A	96	Uvrabc system protein C; DNA binding protein; 1.50	96.45
1yd6_A	99	UVRC; DNA binding protein; 2.00A {Bacillus caldote	96.41
2wsh_A	143	Endonuclease II; GIY-YIG, hydrolase; 1.90A {Entero	96.04

>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A

Probab=96.45  E-value=0.0013  Score=46.83  Aligned_cols=38  Identities=32%  Similarity=0.611  Sum_probs=28.9

Q ss_pred             eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854           52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS  104 (144)
Q Consensus        52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~  104 (144)
                      +.+||.  .||+|-.=           +  +=-++|+|+|.|+|+|+.+|=+.
T Consensus         9 l~~lP~--~pGVY~~~-----------d--~g~vlYVGKAknLr~Rv~syf~~   46 (96)
T 1yd0_A            9 ILLAPE--EPGVYIFK-----------N--KGVPIYIGKAKRLSNRLRSYLNP   46 (96)
T ss_dssp             HHHCCS--SCEEEEEE-----------E--TTEEEEEEEESSHHHHHHGGGSC
T ss_pred             HHhCCC--CCeEEEEE-----------C--CCeEEEEecCcCHHHHHHHHccC
Confidence            566776  59999761           1  12379999999999999999554

>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}

Probab=96.41  E-value=0.0017  Score=46.25  Aligned_cols=40  Identities=33%  Similarity=0.661  Sum_probs=29.8

Q ss_pred             eecCCCCCCCceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCCC
Q 041854           52 VHNLPSTSGPGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRSG  105 (144)
Q Consensus        52 v~NLP~~s~pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~G  105 (144)
                      +.+||.  .||+|-.=           +.++ -|+|+|+|.|+|+|+.+|=+..
T Consensus         9 l~~lP~--~pGVY~~~-----------d~~g-~vlYVGKAknLr~Rv~syf~~~   48 (99)
T 1yd6_A            9 LAVLPE--QPGCYLMK-----------DKHG-TVIYVGKAKSLKERVRSYFTGT   48 (99)
T ss_dssp             HHTCCS--SCEEEEEE-----------CSSC-CEEEEEEESCHHHHHHGGGSSC
T ss_pred             HHhCCC--CCeEEEEE-----------cCCC-CEEEEecCcCHHHHHHHHcccC
Confidence            567776  58999761           1122 3799999999999999996543

>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}

Probab=96.04  E-value=0.0043  Score=47.82  Aligned_cols=40  Identities=20%  Similarity=0.545  Sum_probs=31.1

Q ss_pred             eecCCCCCC-CceeeeceecccCCCCCCCCCCeEEEeccchhhHHHHHHhhCCC
Q 041854           52 VHNLPSTSG-PGVYELGIVASRSRTDRIDSDDVVVVYLGQADSVRTRLQCYGRS  104 (144)
Q Consensus        52 v~NLP~~s~-pGlYELGV~~~~~~~g~l~~~dVvvVYlGqaenVR~RLq~YGr~  104 (144)
                      +..||...+ ||+|-.= .            +=-|+|+|+|.|+|+|+.+|-+.
T Consensus        31 l~~lp~~pG~~GVY~~~-~------------~g~ViYVGKAknLkkRv~sYf~~   71 (143)
T 2wsh_A           31 IKQLSIPNKYNVIYAIA-I------------NDELVYIGKTKNLRKRINYYRTA   71 (143)
T ss_dssp             BCCCCCCCCCSEEEEEE-E------------TTEEEEEEEESCHHHHHHHHHHH
T ss_pred             cccCcCCCCCceEEEEE-c------------CCeEEEEEecccHhHHHHHhcCC
Confidence            667888655 7799553 1            33579999999999999999665

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00