Citrus Sinensis ID: 041871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MLFHVEAQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQILKIKEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSMSEITAVSRFQDLGMKNRIRESSIDGNERTRRLWLPIARRTVQWFADRERRSRQQSQDRTQPPLDV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccEEcccccccccccccHHHHHHHcccccccccHHHccccccEEEEcccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccHHHHHHHcccHHHHHHHHHHHccccHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccEEEEEcccccccccEEEEEEcccccccEEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccEEcccccccccccccccccccccccHHcccccccEEEEEccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccHHHHEcccccccEEccccccccccccccccccccccccccHHHHccccccccccHHEEEcccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHcccccccccc
Coil and Loop (DISEMBL)
MLFHVEAqsiaddspspdtvsnfkpSLAVVIGILCVMFILTFILLLYAKFCHRasslfantqihnpalirstsrfsgidkavieslpffrfsslkgskqglECAVCLSKFEDTEIlrllpkckhafHISCIDQWLekhsscplcrlkvnaedptifaYSNSMRFmfnnserredsnIELFIQREeehrgssrfsigssfrknkepnkeEELLIQeeavdgddderilhkhnhkiiVSDVIfknrwssassSDLMLLNSELIndmssnrfsnpndfgqfstKRAIENNEQILKIKEEMEMKRLFENKFstisktspgvlvpnvpsssgsnkiisslntsrtinpttdrksmseITAVSRFQdlgmknriressidgnertRRLWLPIARRTVQWFADRerrsrqqsqdrtqppldv
Flexible Loop (DISEMBL)
MLFHVEAQsiaddspspdtvsnFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFAntqihnpalirstsrfSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIqreeehrgssrfsigssfrknkepnkeeELLIQEEAVDGDDDERILHKHnhkiivsdviFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQILKIKEEMEMKRLFENKfstisktspgvlvpnvpsssgsnkiisslntsrtinpttdrksmseitavsrfqdlgmknriressidgnertrrlwlpiarrtvqwfadrerrsrqqsqdrtqppldv
Low Complexity Region (SEG)
MLFHVEAQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHrgssrfsigssfrknkepnkeeeLLIQEEAVDGDDDERILHKHNHKIIVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQILKIKEEMEMKRLFENKFSTISKTSPGVLVPNVPsssgsnkiissLNTSRTINPTTDRKSMSEITAVSRFQDLGMKNRIRESSIDGNERTRRLWLPIARRTVQWFAdrerrsrqqsqdrtqPPLDV
Disordered region (IsUnstruct)
***********************KPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMF**********************************************************RILHKHNHKIIVSDVIFKNRWS************************************************************************************************************************************TRRLWLPIARRTVQWFA********************
Disordered Region (DISOPRED)
MLFH*********************SLAVVIGILCVMFILTFILLLYAKFCH*************************IDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK**************************************************************************************************************************************************************************************************************TAVS**************************LPIARRTVQWFA********************
Disordered Region (DISEMBL)
********************SNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQRE********FSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQILKIKEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSMSEITAVSRFQDLGMKNRIRESSIDGNERTRRLWLPIARRTVQWFA********************
Disordered Region (DISPRO)
MLFHVEAQS**********VSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRAS*********************GIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN*****************************************************************************LHKHNHKIIVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFS********STK*******QILKIKEEMEMKRLFENKF*T*******************************************IT*VSRFQDLGM******SSIDGNERTRRLWLPIARRTVQWFADRER****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFHVEAQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQILKIKEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSMSEITAVSRFQDLGMKNRIRESSIDGNERTRRLWLPIARRTVQWFADRERRSRQQSQDRTQPPLDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
Q5XF85	432	E3 ubiquitin-protein liga	yes	no	0.906	0.870	0.496	2e-94
Q9SL78	390	Putative RING-H2 finger p	no	no	0.814	0.866	0.450	1e-84
Q5EAE9	407	RING-H2 finger protein AT	no	no	0.583	0.594	0.370	2e-34
Q8W571	323	RING-H2 finger protein AT	no	no	0.330	0.424	0.443	2e-27
Q9LF64	362	RING-H2 finger protein AT	no	no	0.339	0.389	0.406	8e-25
Q84W40	404	RING-H2 finger protein AT	no	no	0.339	0.349	0.363	3e-23
O64763	378	E3 ubiquitin-protein liga	no	no	0.279	0.306	0.401	4e-23
Q8RXX9	398	E3 ubiquitin-protein liga	no	no	0.330	0.344	0.368	1e-22
Q9C7I1	327	RING-H2 finger protein AT	no	no	0.262	0.333	0.443	1e-21
Q9SK92	381	E3 ubiquitin-protein liga	no	no	0.298	0.325	0.379	1e-21

>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2

 Score =  346 bits (887), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 217/437 (49%), Positives = 284/437 (64%), Gaps = 61/437 (13%)

Query: 2   LFHVEAQSIADDSPSP----DTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCH---RA 54
           L H  A +    +P P    D V+NF+PSLAVV G+L +MF LTF+LL+YAK CH   R+
Sbjct: 11  LLHSYASA---QTPPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRS 67

Query: 55  SS----LFANTQIHNPALIRSTS---RFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCL 107
            S                 RST+   RFSG+DK  IESLP FRFS+LKGSKQGL+C+VCL
Sbjct: 68  GSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQGLDCSVCL 127

Query: 108 SKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA-EDPTIFAYSNSMRFMF 166
           SKFE  EILRLLPKC+HAFHI CIDQWLE+H++CPLCR +V+  ED ++    NS RF+ 
Sbjct: 128 SKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNGNSFRFL- 186

Query: 167 NNSERREDSNIELFIQREEEHR--------GSSRFSIGSSFRKN-KEPNKEEELLIQEEA 217
           N SE REDS++EL+I+REEE          GSSRFSIG SFRK  K  NKE+ LL  +E 
Sbjct: 187 NQSEIREDSSLELYIEREEEEERIHREELSGSSRFSIGESFRKILKLGNKEKTLL--DEH 244

Query: 218 VDGDDDERILHKHNHKIIVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQ 277
           V+  D+++++HK NH+I+VSDV+FKNRWS+ SSSDLM LNSE++N +SS RFS+ +    
Sbjct: 245 VNDKDEKKLMHKFNHRIVVSDVVFKNRWSNVSSSDLMFLNSEMVNSISSERFSSLDH--- 301

Query: 278 FSTKRAIENNE-QILKIKEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLN 336
              KR  E ++  IL+IKEEME KR+ ENK ++++      +  +    SGS        
Sbjct: 302 --VKRGDEEDQIGILRIKEEMEAKRMLENKLTSMT-----TMFSSENGDSGSK------- 347

Query: 337 TSRTINPTTDRKSMSEITAVSRFQDLGMKNRIRESSID--------GN---ERTRRLWLP 385
            SR++     R+S+S+ITAV R   + +      S+ +        GN   ER RRLWLP
Sbjct: 348 -SRSVMIEPGRRSVSDITAVPRLS-ISIHGDCSGSAAETASALQNGGNETEERRRRLWLP 405

Query: 386 IARRTVQWFADRERRSR 402
           IAR+T QWFA+RE+RS+
Sbjct: 406 IARKTAQWFANREKRSQ 422

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana GN=ATL12 PE=3 SV=1

 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 252/417 (60%), Gaps = 79/417 (18%)

Query: 4   HVEAQSIADDSPSPDTVSN---FKPSLAVVIGILCVMFILTFILLLYAKFCH---RASSL 57
           +V AQS     P P+  +    FKPSLA++ G+  ++F LTF+LL+YAK  H   R+ + 
Sbjct: 19  YVSAQS----PPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETD 74

Query: 58  FANTQIHN----PALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDT 113
               +I +      L   +SRFSG+DK  IESLPFFRFS+LKG KQGLEC+VCLSKFED 
Sbjct: 75  SDGERIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDV 134

Query: 114 EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED--PTIFAYSNSMRFMFNNSER 171
           EILRLLPKC+HAFHI CIDQWLE+H++CPLCR +VN ED    +   S S+R +  +  R
Sbjct: 135 EILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQSETR 194

Query: 172 REDSNIELFIQREE-EHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKH 230
            EDS +E++I+REE  + GSSRF   SSFRK      ++ LL++ E  +  D+++++HK 
Sbjct: 195 EEDSRLEIYIEREEGTNDGSSRF---SSFRK----ILKKSLLLEREGNENIDEKKLMHKF 247

Query: 231 NHKIIVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQI 290
           NH+I+VSD +FKNRWS+ +SSDL  L SE++N +SS+RFS        S  R    N   
Sbjct: 248 NHRIVVSDAVFKNRWSNITSSDLTFLTSEMLNSVSSDRFS--------SVDRVHRGN--- 296

Query: 291 LKIKEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSM 350
           L+ KE+MEMKR+               L+ +  SS                     R+++
Sbjct: 297 LRDKEDMEMKRM---------------LIKHKDSS---------------------RRTV 320

Query: 351 SEITAVSRFQDLGMKNRIRESSIDGN--------ERTRRLWLPIARRTVQWFADRER 399
           SEIT VSR + +G   R   +S   N        ER RRLWLPIARRT QWF +RE+
Sbjct: 321 SEITTVSREKAVGGSYRGSTASTSQNYAVTATTEERRRRLWLPIARRTAQWFVNREK 377

Arabidopsis thaliana (taxid: 3702)

>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2 SV=2

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/294 (37%), Positives = 146/294 (49%), Gaps = 52/294 (17%)

Query: 20  VSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNPALIRSTS------ 73
            S+  P +AVVI +L   F LTF+LLLY K C R +           A+ R         
Sbjct: 51  TSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGG 110

Query: 74  ------RFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFH 127
                 + SGID++VIESLP FRF +L G K GLECAVCL++FE TE+LRLLPKCKHAFH
Sbjct: 111 GVVGGRKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFH 170

Query: 128 ISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNS-MRFMFNNSERREDSN----IELFI- 181
           + C+D WL+ HS+CPLCR +V+ ED  +    NS     F+  E    +N    +  FI 
Sbjct: 171 VECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSVNNNPPGLTRFIP 230

Query: 182 ---------------QREEEHRGSSRF---------SIGSSFRKNKEPNKEEE-----LL 212
                           R  E R SS +         S+ SS + N    ++ E      L
Sbjct: 231 VSRISGRHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVNDAGEEKSESVAVNCL 290

Query: 213 IQEEAVDG----DDDERILHKHNHKIIVSDVIFKN-RWSSASSSDLMLLNSELI 261
            + +  DG     + E    +  H+II+S     + RWS    SDL+ L SE+I
Sbjct: 291 DRLQRKDGLLLIPNRESFEGRFEHRIIISGGNRDDQRWSEVRPSDLLYLRSEMI 344

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 5/142 (3%)

Query: 14  SPSP-DTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNPALIRST 72
           SPSP D  +   PS   V  +L  +F LT +L +Y + C R++   +     N A    +
Sbjct: 32  SPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRA-NDGS 90

Query: 73  SRFSGIDKAVIESLPFFRFSSLKGSKQG---LECAVCLSKFEDTEILRLLPKCKHAFHIS 129
           SR  G+D AV+ES P F +SS+K SK G   LECA+CL++ ED E +RLLP C H FHI 
Sbjct: 91  SRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHID 150

Query: 130 CIDQWLEKHSSCPLCRLKVNAE 151
           CID WL  H++CP+CR  + A+
Sbjct: 151 CIDTWLYSHATCPVCRSNLTAK 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1

 Score =  115 bits (287), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 9/150 (6%)

Query: 29  VVIGILCVMFILTFILLLYAKFCHR----ASSLFANTQIHNPALIRSTSRFS----GIDK 80
            +IGIL    IL     L +K+CHR    +SS   N   +      ST R S    G+++
Sbjct: 60  ALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNE 119

Query: 81  AVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS 140
           ++I+S+  +++ S  G   G +C+VCLS+FE+ E LRLLPKC HAFH+ CID WL+ HS+
Sbjct: 120 SMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSN 179

Query: 141 CPLCRLKVNA-EDPTIFAYSNSMRFMFNNS 169
           CPLCR  V    +PT     N    + N S
Sbjct: 180 CPLCRAFVTGVNNPTASVGQNVSVVVANQS 209

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 5/146 (3%)

Query: 5   VEAQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFC-HRASSL-FANTQ 62
           V  Q+    S      S F P++A+++ +L  +F       +Y + C  R   + + N  
Sbjct: 41  VAGQATHGGSDVSGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPN 100

Query: 63  IHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKG---SKQGLECAVCLSKFEDTEILRLL 119
                L  +  +  G+D ++IE+ P F++S++K     K+ LEC+VCL++FED E LRL+
Sbjct: 101 DAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLI 160

Query: 120 PKCKHAFHISCIDQWLEKHSSCPLCR 145
           PKC H FH  CID WL  H++CPLCR
Sbjct: 161 PKCCHVFHPGCIDAWLRSHTTCPLCR 186

Arabidopsis thaliana (taxid: 3702)

>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 11/127 (8%)

Query: 30  VIGILCVMFILTFILLLYAKFCHRA------SSLFANTQIHNPALIRSTSRFS--GIDKA 81
           V+ ++ V+F++ F ++  + FC R+      SS+F +T     + +    R +  G+D  
Sbjct: 51  VVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAE 110

Query: 82  VIESLPFFRFSSLKG---SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH 138
            IE+ P F +S +K     K G+ECAVCL +FED E LRL+P C H FH  C+D WL +H
Sbjct: 111 AIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEH 170

Query: 139 SSCPLCR 145
           S+CPLCR
Sbjct: 171 STCPLCR 177

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 7/144 (4%)

Query: 7   AQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRA--SSLFANTQIH 64
           +QS    +  P       P++AV++ IL           +Y + C     + +       
Sbjct: 29  SQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGAR 88

Query: 65  NPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQG---LECAVCLSKFEDTEILRLLPK 121
           + A + + +R  G+D +V+E+ P F +S +K  K G   LECA+CL++FED E LRLLPK
Sbjct: 89  SRATVNAAAR--GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPK 146

Query: 122 CKHAFHISCIDQWLEKHSSCPLCR 145
           C H FH  CID WLE H +CP+CR
Sbjct: 147 CDHVFHPHCIDAWLEAHVTCPVCR 170

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the plant C/N response and the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 75/133 (56%), Gaps = 24/133 (18%)

Query: 28  AVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNP------------ALIRSTSRF 75
           AV+I +L  MF L F +L     C++    + NT  H              A  R TSR 
Sbjct: 47  AVIIAML--MFTLLFSMLACC-VCYK----YTNTSPHGTSSDTEEGGHGEVAFTRRTSR- 98

Query: 76  SGIDKAVIESLPFFRFSSLKG---SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCID 132
            G+ K VI S P F +S +KG    K G+ECA+CL++FED E LRL+P C HAFH SCID
Sbjct: 99  -GLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCID 157

Query: 133 QWLEKHSSCPLCR 145
            WL   S+CP+CR
Sbjct: 158 VWLSSRSTCPVCR 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 5/129 (3%)

Query: 21  SNFKPSLAVVIGILCVMFILTFILLLYAKFC-HRASSLFANTQIHNPALIRSTSRFSGID 79
           ++F P+ A+++ +L  +F     + +Y + C   A  + +     N   +R T+   G+D
Sbjct: 33  TSFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTE-PGLD 91

Query: 80  KAVIESLPFFRFSSLKG---SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE 136
            +VIE+ P F +S++K     K+ LEC VCL++FED E LRL+P+C H FH  CID WL 
Sbjct: 92  ASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLR 151

Query: 137 KHSSCPLCR 145
             ++CPLCR
Sbjct: 152 SQTTCPLCR 160

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
225445146	423	PREDICTED: E3 ubiquitin-protein ligase A	0.966	0.947	0.629	1e-132
356496420	426	PREDICTED: E3 ubiquitin-protein ligase A	0.961	0.936	0.612	1e-125
356531305	419	PREDICTED: E3 ubiquitin-protein ligase A	0.944	0.935	0.575	1e-122
255641525	419	unknown [Glycine max]	0.944	0.935	0.568	1e-119
449468049	412	PREDICTED: E3 ubiquitin-protein ligase A	0.913	0.919	0.568	1e-109
297738780	413	unnamed protein product [Vitis vinifera]	0.840	0.845	0.550	1e-104
359476036	413	PREDICTED: E3 ubiquitin-protein ligase A	0.918	0.922	0.511	1e-101
449467309	422	PREDICTED: E3 ubiquitin-protein ligase A	0.951	0.936	0.520	1e-101
449531896	422	PREDICTED: E3 ubiquitin-protein ligase A	0.951	0.936	0.517	1e-100
147765316	915	hypothetical protein VITISV_020095 [Viti	0.918	0.416	0.507	1e-100

>gi|225445146|ref|XP_002280643.1| PREDICTED: E3 ubiquitin-protein ligase ATL42 [Vitis vinifera]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/418 (62%), Positives = 322/418 (77%), Gaps = 17/418 (4%)

Query: 1   MLFHVEAQSI--ADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLF 58
           +LF+VE+Q+    ++  S D V+ FKPSLAVVIGIL VMF+LTFILL+YAK CHRAS+  
Sbjct: 15  LLFNVESQAAPGQENFSSQDAVTAFKPSLAVVIGILAVMFLLTFILLVYAKLCHRASNSD 74

Query: 59  ANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRL 118
              Q     L RS SRFSGIDK VIESLPFFRF SLKGSK+GLECAVCLSKFED EILRL
Sbjct: 75  RENQ---QGLTRSESRFSGIDKTVIESLPFFRFCSLKGSKEGLECAVCLSKFEDIEILRL 131

Query: 119 LPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIE 178
           LPKCKHAFHI C+DQWLEKHSSCPLCR KV+AED  I  YSNS+RF++N SE RE+SN+E
Sbjct: 132 LPKCKHAFHIDCVDQWLEKHSSCPLCRHKVSAEDLAILTYSNSLRFLWNQSELRENSNLE 191

Query: 179 LFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSD 238
           LF+QREE+H GSSRFSIGSSFRK ++  KEEE ++ +E  D +DDE+ILHK NHKIIVSD
Sbjct: 192 LFVQREEDHHGSSRFSIGSSFRKVEKGVKEEESVLIQEEEDDNDDEKILHKINHKIIVSD 251

Query: 239 VIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQILKIKEEME 298
           V+ KNRWSS SSSDLM LNSEL++ MSS+RF++  D    +  R IE+ E ++KIKEE+E
Sbjct: 252 VVLKNRWSSVSSSDLMYLNSELVHAMSSDRFASL-DSNNSAMGRPIEDWE-VMKIKEEIE 309

Query: 299 MKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSMSEITAVSR 358
            KR+FE++ S I+ ++P V    +PS+S +    +S + SR ++P T+++SMSEITA SR
Sbjct: 310 RKRIFESRVSRINHSNP-VSSSGLPSTSKTEA--NSGHASRFLHP-TEKRSMSEITACSR 365

Query: 359 FQDLGMKNRIRESSIDGN----ERTRRLWLPIARRTVQWFADRERRSRQQSQDRTQPP 412
           + D   KNRIRESS+  N    ER RRLWLPIARRTV+WFA+RE    QQSQ+  Q P
Sbjct: 366 YADFSTKNRIRESSLAQNNIKEERMRRLWLPIARRTVEWFANRE--GSQQSQNTKQAP 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496420|ref|XP_003517066.1| PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Glycine max]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/428 (61%), Positives = 315/428 (73%), Gaps = 29/428 (6%)

Query: 1   MLFHVEAQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHR-ASSLFA 59
           + FH  AQ+ A   PS D VSNF+PSLAVVIGIL VMF+LTF LL+YAKFC R ASS   
Sbjct: 15  LCFHARAQTAA---PSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQRCASSPVG 71

Query: 60  NTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLL 119
           +T+   P  +RS SRFSGIDK VIESLPFFRFSSLKGSK+GLECAVCLSKFED EILRLL
Sbjct: 72  DTENQLP-FVRSRSRFSGIDKNVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLL 130

Query: 120 PKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIEL 179
           PKCKHAFHI CID WLEKHSSCP+CR +VN ED T F YSNS+R + N SE  E+SNIE+
Sbjct: 131 PKCKHAFHIDCIDHWLEKHSSCPICRHRVNPEDHTTFTYSNSLRRLANQSEVGEESNIEI 190

Query: 180 FIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSDV 239
           F+QREEEH GSSRFS GSSFRK  +  KEEE LI++ A D D +++  HKHNH+I +SDV
Sbjct: 191 FVQREEEHHGSSRFSFGSSFRKTGKYVKEEEFLIEKGAEDSDGNQKGYHKHNHRITISDV 250

Query: 240 IFKNRWSSASSSDLMLLNSELINDMSSNRFSN-PNDFGQFSTKRAIENNEQILKIKEEME 298
           +FK+RWS+ SSSDLM LNSE++ND SSNRFSN  ++    S+ R +  NEQI+ IKEEME
Sbjct: 251 VFKHRWSNVSSSDLMFLNSEMLNDASSNRFSNLESNADMMSSTRGVVENEQIMNIKEEME 310

Query: 299 MKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTI------NPTTDRKSMSE 352
            K  FE+K         GVL  N+ S S  + + +S +  ++       NP  +++SMSE
Sbjct: 311 RKISFESKV--------GVL-NNIKSVSDKHLLFTSDSAGKSTHAPKYANP-GEKRSMSE 360

Query: 353 ITAVSRFQDLGMKNRIRE--SSIDGN---ERTRRLWLPIARRTVQWFADRERRSRQQSQD 407
           ITAVSRF DLGMK R+ +  SS+  N   ER R++W PIARRT QWF +RERRS QQSQ+
Sbjct: 361 ITAVSRFGDLGMKMRVFKDSSSLQNNLKEERMRQIWFPIARRTAQWFVNRERRS-QQSQN 419

Query: 408 RTQPPLDV 415
           + Q PLDV
Sbjct: 420 KQQ-PLDV 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531305|ref|XP_003534218.1| PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Glycine max]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/426 (57%), Positives = 300/426 (70%), Gaps = 34/426 (7%)

Query: 1   MLFHVEAQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHR---ASSL 57
           + FHV AQ+ A    S D VSNF+PSLAVVIGIL VMF+LTF LL+YAKFCHR    +S 
Sbjct: 17  LCFHVRAQTSA--PSSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCHRRHGGASA 74

Query: 58  FANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILR 117
             +++ +    +RS SRFSGIDK VIESLPFFRFS+LKG K+GLECAVCLSKFED EILR
Sbjct: 75  VGDSE-NQLTFVRSRSRFSGIDKTVIESLPFFRFSALKGLKEGLECAVCLSKFEDVEILR 133

Query: 118 LLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNI 177
           L+PKCKHAFHI CID WLEKHS+CP+CR +VN ED T F YSNS+R +       E+SNI
Sbjct: 134 LVPKCKHAFHIDCIDHWLEKHSTCPICRHRVNPEDHTTFTYSNSLRMLAG-----EESNI 188

Query: 178 ELFIQR-EEEHRGSSRFSI--GSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKI 234
           E+ +QR EEEH GSSRFS+   SSFRK     KEEELLIQ+ A D D +++  HKHNH+I
Sbjct: 189 EILVQREEEEHHGSSRFSVIGSSSFRKTV---KEEELLIQKGAEDSDGNQKGYHKHNHRI 245

Query: 235 IVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQILKIK 294
            +SDV+FK+RWS+ SSSDLM LNSE++ND SSNRFS+     +  T+  +  NEQI+ IK
Sbjct: 246 TISDVVFKHRWSNVSSSDLMFLNSEMLNDTSSNRFSSN---LESITRGVVVENEQIMNIK 302

Query: 295 EEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSMSEIT 354
           EEME K  FENK         G L  N+ S    +   +S +  + +NP  +++SMSEIT
Sbjct: 303 EEMERKISFENKV-------VGAL-NNIVSDHKEDPPFTSDSAPKYVNP-GEKRSMSEIT 353

Query: 355 AVSRFQDLGMKNRIRE--SSIDGN---ERTRRLWLPIARRTVQWFADRERRSRQQSQDRT 409
           AVSRF DLGMK R+ +   S+  N   ER R++W PIARRT QWF +RE R   QSQ+  
Sbjct: 354 AVSRFGDLGMKMRVLKDSDSLQNNLKEERMRQIWFPIARRTAQWFVNREERRSLQSQNNK 413

Query: 410 QPPLDV 415
           Q PLDV
Sbjct: 414 QQPLDV 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641525|gb|ACU21036.1| unknown [Glycine max]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/426 (56%), Positives = 297/426 (69%), Gaps = 34/426 (7%)

Query: 1   MLFHVEAQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHR---ASSL 57
           + FHV AQ+ A    S D VSNF+PSLAVVIGIL VMF+LTF LL+YAKF HR    +S 
Sbjct: 17  LCFHVRAQTSA--PSSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFGHRRHGGASA 74

Query: 58  FANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILR 117
             +++ +    +RS SRFSGIDK VIESLPFFRFS+LKG K+GLECAVCLSKFED EILR
Sbjct: 75  VGDSE-NQLTFVRSRSRFSGIDKTVIESLPFFRFSALKGLKEGLECAVCLSKFEDVEILR 133

Query: 118 LLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNI 177
           L+PKCKHAFHI CID WLEKHS+CP+CR +VN ED T F YSNS+R +       E+SNI
Sbjct: 134 LVPKCKHAFHIDCIDHWLEKHSTCPICRHRVNPEDHTTFTYSNSLRMLAG-----EESNI 188

Query: 178 ELFIQR-EEEHRGSSRFSI--GSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKI 234
           E+ +QR EEEH GSSRFS+   SSFRK     KEEELLIQ+ A D D +++  HKHN +I
Sbjct: 189 EILVQREEEEHHGSSRFSVIGSSSFRKTV---KEEELLIQKGAEDSDGNQKGYHKHNRRI 245

Query: 235 IVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQILKIK 294
            +SDV+FK+RWS+ S SDLM LNSE++ND SSNRFS+     +  T+  +  NEQI+ IK
Sbjct: 246 TISDVVFKHRWSNVSPSDLMFLNSEMLNDTSSNRFSSNL---ESITRGVVVENEQIMNIK 302

Query: 295 EEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSMSEIT 354
           EEME K  FENK         G L  N+ S    +   +S +  + +NP  +++SMSEIT
Sbjct: 303 EEMERKISFENKVV-------GAL-NNIVSDHKEDPPFTSDSAPKYVNP-GEKRSMSEIT 353

Query: 355 AVSRFQDLGMKNRIRE--SSIDGN---ERTRRLWLPIARRTVQWFADRERRSRQQSQDRT 409
           AVSRF DLGMK R+ +   S+  N   ER R++W PIARRT QWF +RE R   QSQ+  
Sbjct: 354 AVSRFGDLGMKMRVLKDFDSLQNNLKEERMRQIWFPIARRTAQWFVNREERRSLQSQNNK 413

Query: 410 QPPLDV 415
           Q PLDV
Sbjct: 414 QQPLDV 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468049|ref|XP_004151734.1| PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis sativus] gi|449531894|ref|XP_004172920.1| PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis sativus]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/410 (56%), Positives = 299/410 (72%), Gaps = 31/410 (7%)

Query: 21  SNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNPALIRSTSRFSGIDK 80
           S F+PSL  VIGIL VMF+LTFILL+YAKFCHR +S+  +  +++P  IRS+ RFSGIDK
Sbjct: 9   SAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRASISVD-DVNHPRQIRSSPRFSGIDK 67

Query: 81  AVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS 140
            VIESLPFFRFS+LKG+K+GLECAVCLSKFED EILRLLPKCKHAFHI+CID WLEKH+S
Sbjct: 68  TVIESLPFFRFSTLKGTKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHAS 127

Query: 141 CPLCRLKVNAEDPTIFAYSNSMRFMFNN-SERREDSNIELFIQREEEH------RGSSRF 193
           CPLCR +V +ED  + + S+SMRF+ +N SE ++DSNIELF+QREEE        GSSRF
Sbjct: 128 CPLCRRRVGSEDLKLLSNSSSMRFLLSNLSELKQDSNIELFVQREEEEQQQQILHGSSRF 187

Query: 194 SIGSSFRKNKEPNKEEELLIQEEAVDGDDDE-RILHKHNHKIIVSDVIFKNRWSSASSSD 252
           SIG SFRK  + +KE E+LI + + D +D++ + LH+HNHKIIVSD +F NRWS+ SSSD
Sbjct: 188 SIGRSFRKILKNDKENEMLISKASGDYEDEKMKNLHRHNHKIIVSDFVFMNRWSNVSSSD 247

Query: 253 LMLLNSELINDMSSNRFSN-PNDFGQFSTKRAIENNEQILKIKEEMEMKRLFENKFSTIS 311
           LM LN E+I+ +SS RF++   D  Q +  R+    E+ILKIKEEME+KR FE+K + I+
Sbjct: 248 LMFLNKEMIDAISSRRFTSLETDIEQSTLPRS-RQIEEILKIKEEMEIKRSFESKLNKIT 306

Query: 312 KTSPGVLVPNVPSSSGSNKIISSLNTSRT-INPTTDRKSMSEITAVSRF--QDLGM---- 364
           +++    +   PS+S      SS N S+T I     R+S+SEIT VSRF   DL M    
Sbjct: 307 QSNS---ILGYPSTSQ-----SSTNPSQTRITSPDARRSVSEITGVSRFGHDDLYMNFNR 358

Query: 365 KNRIRESS-IDGN---ERTRRLWLPIARRTVQWFADRERRSRQQSQDRTQ 410
           K +  ESS ++ N   ER R +W PIA+RTVQWFA+RE R  Q +++R Q
Sbjct: 359 KFKNGESSDLESNVKQERMREIWYPIAKRTVQWFANRETRF-QTAENRQQ 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738780|emb|CBI28025.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/414 (55%), Positives = 280/414 (67%), Gaps = 65/414 (15%)

Query: 1   MLFHVEAQSI--ADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLF 58
           +LF+VE+Q+    ++  S D V+ FKPSLAVVIGIL VMF+LTFILL+YAK CHRAS+  
Sbjct: 61  LLFNVESQAAPGQENFSSQDAVTAFKPSLAVVIGILAVMFLLTFILLVYAKLCHRASN-- 118

Query: 59  ANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRL 118
            + + +   L RS SRFSGIDK VIESLPFFRF SLKGSK+GLECAVCLSKFED EILRL
Sbjct: 119 -SDRENQQGLTRSESRFSGIDKTVIESLPFFRFCSLKGSKEGLECAVCLSKFEDIEILRL 177

Query: 119 LPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIE 178
           LPKCKHAFHI C+DQWLEKHSSCPLCR KV+AED  I  YSNS+RF++N SE RE+SN+E
Sbjct: 178 LPKCKHAFHIDCVDQWLEKHSSCPLCRHKVSAEDLAILTYSNSLRFLWNQSELRENSNLE 237

Query: 179 LFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSD 238
           LF  +EEE                        +LIQEE  D +DDE+ILHK NHKIIVSD
Sbjct: 238 LFGVKEEE-----------------------SVLIQEEEDD-NDDEKILHKINHKIIVSD 273

Query: 239 VIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQILKIKEEME 298
           V+ KNRWSS SSSDLM LNSEL++ MSS+RF++  D    +  R IE+ E ++KIKEE+E
Sbjct: 274 VVLKNRWSSVSSSDLMYLNSELVHAMSSDRFASL-DSNNSAMGRPIEDWE-VMKIKEEIE 331

Query: 299 MKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSMSEITAVSR 358
            KR+FE++ S I+ ++P V    +PS+S +    +S + SR ++PT  R  M        
Sbjct: 332 RKRIFESRVSRINHSNP-VSSSGLPSTSKTEA--NSGHASRFLHPTEKRSIM-------- 380

Query: 359 FQDLGMKNRIRESSIDGNERTRRLWLPIARRTVQWFADRERRSRQQSQDRTQPP 412
                                RRLWLPIARRTV+WFA+RE    QQSQ+  Q P
Sbjct: 381 ---------------------RRLWLPIARRTVEWFANRE--GSQQSQNTKQAP 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476036|ref|XP_002281341.2| PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Vitis vinifera]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/424 (51%), Positives = 274/424 (64%), Gaps = 43/424 (10%)

Query: 1   MLFH-VEAQSIAD-DSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRAS--- 55
           +LFH V+AQ  +D D   P  +   +P L VV+G+L +MF LTF+LL YAKFCH A    
Sbjct: 12  LLFHRVKAQDTSDSDHSGPHFL---QPHLMVVVGVLSIMFCLTFLLLAYAKFCHVAVPDF 68

Query: 56  SLFANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEI 115
           S F N Q +   L R   R SGIDK V+ESLPFFRFSSLKGSK+GLECAVCLSKFE+ E+
Sbjct: 69  SDFDNHQQNLHGLDRERLRSSGIDKRVMESLPFFRFSSLKGSKEGLECAVCLSKFEEIEV 128

Query: 116 LRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDS 175
           LRLLP C+HAFHI+CIDQWLE HSSCPLCR K +A+D T F+YSNS+RF  N     EDS
Sbjct: 129 LRLLPNCRHAFHINCIDQWLESHSSCPLCRYKFDAQDLTNFSYSNSLRFPQNPLNLAEDS 188

Query: 176 NIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKII 235
            I LF+QRE++ +GSSRFSIGSSF+K     K+EE LIQE      D  ++ HK NHKII
Sbjct: 189 TINLFVQREQDDQGSSRFSIGSSFQKAMNKGKKEEFLIQEGESSNGDYHKLWHKVNHKII 248

Query: 236 VSDVIFKNRWSSASSSDLMLLNSELINDMSSNRF----SNPNDFGQFSTKRAIENNEQIL 291
            S++IFKNRWS A+SSD M LNSE+     +NRF    SN N F          N + ++
Sbjct: 249 FSNMIFKNRWSDANSSDFMFLNSEMNETSPNNRFPSLESNNNGFSM--------NKQVVI 300

Query: 292 KIKEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLN---TSRTINPTTDRK 348
           K++E ++ K + E+ F+ IS+               SN + +S +   TSR +NP   R 
Sbjct: 301 KMQEGVDKKIVHESNFTRISR---------------SNSVCNSTHEASTSRLLNPDLKR- 344

Query: 349 SMSEITAVSRFQDLGMKNRIRESSIDGN----ERTRRLWLPIARRTVQWFADRERRSRQQ 404
           SMSE+T +SRF +L  K+R++E S   N    ERTR+LWL    RTVQWFA RE   + Q
Sbjct: 345 SMSELTNLSRFTELNTKDRVKELSFGRNNAEEERTRKLWLTRTHRTVQWFAGREEIPKNQ 404

Query: 405 SQDR 408
           S  +
Sbjct: 405 SAKK 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467309|ref|XP_004151366.1| PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis sativus]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/423 (52%), Positives = 281/423 (66%), Gaps = 28/423 (6%)

Query: 1   MLFHVEAQSIADDSPSPDTVSNFKP-SLAVVIGILCVMFILTFILLLYAKFCHRASSLFA 59
            LF V AQ+     PSP    +  P +  +VIGIL +MF + FIL++YAKFCH  S    
Sbjct: 15  FLFPVIAQA-----PSPPKAGSGIPQNFTIVIGILSIMFSMVFILVVYAKFCHPTSHFRG 69

Query: 60  NTQIH-NPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRL 118
             Q H    L+RS SRFSG+D+ VI++LPFFRFSSLKGS++GLECAVCLSKFED E+LRL
Sbjct: 70  EPQAHLGHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSKFEDIEVLRL 129

Query: 119 LPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNN--SERREDSN 176
           LPKCKHAFHI CID WLEKHSSCP+CR ++  ED   F  SNS+R + NN  SE  +DS 
Sbjct: 130 LPKCKHAFHIGCIDHWLEKHSSCPICRCRIGVEDIAFFK-SNSIRLIRNNSRSELPQDSR 188

Query: 177 IELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERIL-HKHNHKII 235
           IELF+QREE H  SSR + G+SFR   + NKE+E+LI+ EA + + +ER+L HKH HKI+
Sbjct: 189 IELFVQREENHHNSSRSNNGTSFRNIGKGNKEKEVLIENEAGECESEERVLFHKHKHKIL 248

Query: 236 VSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFS--NPNDFGQFSTKRAIENNEQILKI 293
           VSD +F NRWS+ SSSDL+ LN+E++  MSSNRFS  +     Q +T+   +  ++  +I
Sbjct: 249 VSDFVFMNRWSNLSSSDLVFLNTEMLGVMSSNRFSSLDSESISQSATRE--KEGKKTSQI 306

Query: 294 KEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSMSEI 353
           KEEMEMKR FE + S   K S   +     +SS  N      +TSRT     +R+S+S+ 
Sbjct: 307 KEEMEMKRSFERRISIAEKNSLVSISGISSTSSDPNA-----STSRT-TILNERRSVSDT 360

Query: 354 TAVSRFQDLGMKNRIRESSI---DGNE-RTRRLWLPIARRTVQWFADRERRSRQQSQDRT 409
           TA SRF     +N  R+SS+   D    R R+LWLPIARRTVQWFA+RE+R R      T
Sbjct: 361 TAFSRFGYFN-ENATRDSSMIEADAKSFRIRQLWLPIARRTVQWFANREQRFRLSKY--T 417

Query: 410 QPP 412
           Q P
Sbjct: 418 QQP 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531896|ref|XP_004172921.1| PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis sativus]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/423 (51%), Positives = 280/423 (66%), Gaps = 28/423 (6%)

Query: 1   MLFHVEAQSIADDSPSPDTVSNFKP-SLAVVIGILCVMFILTFILLLYAKFCHRASSLFA 59
            LF V AQ+     PSP    +  P +  +VIGIL +MF + FIL++YAKFCH  S    
Sbjct: 15  FLFPVIAQA-----PSPPKAGSGIPQNFTIVIGILSIMFSMVFILVVYAKFCHPTSHFRG 69

Query: 60  NTQIH-NPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRL 118
             Q H    L+RS SRFSG+D+ VI++LPFFRFSSLKGS++GLECAVCLS FED E+LRL
Sbjct: 70  EPQAHLGHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSNFEDIEVLRL 129

Query: 119 LPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNN--SERREDSN 176
           LPKCKHAFHI CID WLEKHSSCP+CR ++  ED   F  SNS+R + NN  SE  +DS 
Sbjct: 130 LPKCKHAFHIGCIDHWLEKHSSCPICRCRIGVEDIAFFK-SNSIRLIRNNSRSELPQDSR 188

Query: 177 IELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERIL-HKHNHKII 235
           IELF+QREE H  SSR + G+SFR   + NKE+E+LI+ EA + + +ER+L HKH HKI+
Sbjct: 189 IELFVQREENHHNSSRSNNGTSFRNIGKGNKEKEVLIENEAGECESEERVLFHKHKHKIL 248

Query: 236 VSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFS--NPNDFGQFSTKRAIENNEQILKI 293
           VSD +F NRWS+ SSSDL+ LN+E++  MSSNRFS  +     Q +T+   +  ++  +I
Sbjct: 249 VSDFVFMNRWSNLSSSDLVFLNTEMLGVMSSNRFSSLDSESISQSATRE--KEGKKTSQI 306

Query: 294 KEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLNTSRTINPTTDRKSMSEI 353
           KEEMEMKR FE + S   K S   +     +SS  N      +TSRT     +R+S+S+ 
Sbjct: 307 KEEMEMKRSFERRISIAEKNSLVSISGISSTSSDPNA-----STSRT-TILNERRSVSDT 360

Query: 354 TAVSRFQDLGMKNRIRESSI---DGNE-RTRRLWLPIARRTVQWFADRERRSRQQSQDRT 409
           TA SRF     +N  R+SS+   D    R R+LWLPIARRTVQWFA+RE+R R      T
Sbjct: 361 TAFSRFGYFN-ENATRDSSMIEADAKSFRIRQLWLPIARRTVQWFANREQRFRLSKY--T 417

Query: 410 QPP 412
           Q P
Sbjct: 418 QQP 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765316|emb|CAN66948.1| hypothetical protein VITISV_020095 [Vitis vinifera]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/424 (50%), Positives = 272/424 (64%), Gaps = 43/424 (10%)

Query: 1   MLFH-VEAQSIAD-DSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRAS--- 55
           + FH V+AQ  +D D   P  +   +P L VV+G+L +MF LTF+LL YAKFCH A    
Sbjct: 514 LFFHRVKAQDTSDSDHSGPHFL---QPHLMVVVGVLSIMFCLTFLLLAYAKFCHVAVPDF 570

Query: 56  SLFANTQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEI 115
           S F N Q +   + R   R SGIDK V+ESLPFFRFSSLKGSK+GLECAVCLSKFE+ E+
Sbjct: 571 SDFDNHQQNLHGIDRERLRSSGIDKRVMESLPFFRFSSLKGSKEGLECAVCLSKFEEIEV 630

Query: 116 LRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDS 175
           LRLLP C+HAFHI+CIDQWLE HSSCPLCR K +A+D T F+YSNS+RF  N     EDS
Sbjct: 631 LRLLPNCRHAFHINCIDQWLESHSSCPLCRYKFDAQDLTNFSYSNSLRFPQNPLNLAEDS 690

Query: 176 NIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKII 235
            I LF+QRE++ + SSRFSIGSSF+K     K+EE LIQE      D  ++ HK NHKII
Sbjct: 691 TINLFVQREQDDQXSSRFSIGSSFQKAMNKGKKEEFLIQEGESSNGDYHKLWHKVNHKII 750

Query: 236 VSDVIFKNRWSSASSSDLMLLNSELINDMSSNRF----SNPNDFGQFSTKRAIENNEQIL 291
            S++IFKNRWS A+SSD M LNSE+     +NRF    SN N F          N + ++
Sbjct: 751 FSNMIFKNRWSDANSSDFMFLNSEMNETSPNNRFPSLESNNNGFSM--------NKQVVI 802

Query: 292 KIKEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGSNKIISSLN---TSRTINPTTDRK 348
           K++E ++ K L E+ F+ IS+               SN + +S +   TSR +NP   R 
Sbjct: 803 KMQEGVDKKILHESNFTRISR---------------SNSVCNSTHEASTSRLLNPDLKR- 846

Query: 349 SMSEITAVSRFQDLGMKNRIRESSIDGN----ERTRRLWLPIARRTVQWFADRERRSRQQ 404
           SMSE+T +SRF +L  K+R++E S   N    ERTR+LWL  A  TVQWFA RE   + Q
Sbjct: 847 SMSELTNLSRFTELNTKDRVKELSFXRNNAEEERTRKLWLTRAHXTVQWFAGREEIPKNQ 906

Query: 405 SQDR 408
           S  +
Sbjct: 907 SAKK 910

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2123558	432	AT4G28890 [Arabidopsis thalian	0.860	0.826	0.466	2.5e-81
TAIR|locus:2061698	390	AT2G20030 [Arabidopsis thalian	0.691	0.735	0.473	3.6e-76
TAIR|locus:2140069	323	AT4G40070 [Arabidopsis thalian	0.330	0.424	0.450	2.2e-27
TAIR|locus:2151421	362	AT5G17600 [Arabidopsis thalian	0.407	0.466	0.387	2.2e-27
TAIR|locus:2096444	356	AT3G03550 [Arabidopsis thalian	0.243	0.283	0.411	1.3e-23
TAIR|locus:2044757	378	ATL9 "Arabidopsis toxicos en l	0.349	0.383	0.370	2.3e-23
TAIR|locus:2207026	404	AT1G72200 [Arabidopsis thalian	0.301	0.309	0.384	1.8e-21
TAIR|locus:2122358	302	AT4G09110 [Arabidopsis thalian	0.412	0.566	0.318	2.4e-21
TAIR|locus:2206722	327	AT1G35330 [Arabidopsis thalian	0.342	0.434	0.395	3.9e-21
TAIR|locus:2096309	398	ATL6 "Arabidopsis toxicos en l	0.327	0.341	0.379	7.8e-21

TAIR|locus:2123558 AT4G28890 [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 191/409 (46%), Positives = 253/409 (61%)

Query:    18 DTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCH---RASSLFANTQIHNPALI----- 69
             D V+NF+PSLAVV G+L +MF LTF+LL+YAK CH   R+ S   + + H+  L      
Sbjct:    28 DLVANFEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGS--GDRRRHDRRLRQGIFF 85

Query:    70 -RSTS---RFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHA 125
              RST+   RFSG+DK  IESLP FRFS+LKGSKQGL+C+VCLSKFE  EILRLLPKC+HA
Sbjct:    86 NRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHA 145

Query:   126 FHISCIDQWLEKHSSCPLCRLKVNAE-DPTIFAYSNSMRFMFNNSERREDSNIELFIQRE 184
             FHI CIDQWLE+H++CPLCR +V+ E D ++    NS RF+ N SE REDS++EL+I+RE
Sbjct:   146 FHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNGNSFRFL-NQSEIREDSSLELYIERE 204

Query:   185 EEHXXXXXXXXXXXXXXXXXXXXXXXL-------LIQEEAVDGDDDERILHKHNHKIIVS 237
             EE                        L        + +E V+  D+++++HK NH+I+VS
Sbjct:   205 EEEERIHREELSGSSRFSIGESFRKILKLGNKEKTLLDEHVNDKDEKKLMHKFNHRIVVS 264

Query:   238 DVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNE-QILKIKEE 296
             DV+FKNRWS+ SSSDLM LNSE++N +SS RFS+ +       KR  E ++  IL+IKEE
Sbjct:   265 DVVFKNRWSNVSSSDLMFLNSEMVNSISSERFSSLDH-----VKRGDEEDQIGILRIKEE 319

Query:   297 MEMKRLFENKFSTISKTSPGVLVPNVPXXXXXXXXXXXLNTSRTINPTTDRKSMSEITAV 356
             ME KR+ ENK ++++                        + SR++     R+S+S+ITAV
Sbjct:   320 MEAKRMLENKLTSMT-------------TMFSSENGDSGSKSRSVMIEPGRRSVSDITAV 366

Query:   357 SRFQ-----DLGMKNRIRESSID--GNE---RTRRLWLPIARRTVQWFA 395
              R       D         S++   GNE   R RRLWLPIAR+T QWFA
Sbjct:   367 PRLSISIHGDCSGSAAETASALQNGGNETEERRRRLWLPIARKTAQWFA 415

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2061698 AT2G20030 [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 152/321 (47%), Positives = 205/321 (63%)

Query:     2 LFHVEAQSIADDSPSPD---TVSNFKPSLAVVIGILCVMFILTFILLLYAKFCH---RAS 55
             L +V AQS     P P+   T   FKPSLA++ G+  ++F LTF+LL+YAK  H   R+ 
Sbjct:    17 LDYVSAQS----PPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSE 72

Query:    56 SLFANTQI-HN---PALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFE 111
             +     +I H+     L   +SRFSG+DK  IESLPFFRFS+LKG KQGLEC+VCLSKFE
Sbjct:    73 TDSDGERIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFE 132

Query:   112 DTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP-TIFAYSNSMRFMFNNSE 170
             D EILRLLPKC+HAFHI CIDQWLE+H++CPLCR +VN ED  ++   S++   + N SE
Sbjct:   133 DVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQSE 192

Query:   171 -RREDSNIELFIQREEEHXXXXXXXXXXXXXXXXXXXXXXXLLIQEEAVDGDDDERILHK 229
              R EDS +E++I+REE                         LL++ E  +  D+++++HK
Sbjct:   193 TREEDSRLEIYIEREE------GTNDGSSRFSSFRKILKKSLLLEREGNENIDEKKLMHK 246

Query:   230 HNHKIIVSDVIFKNRWSSASSSDLMLLNSELINDMSSNRFSNPNDFGQFSTKRAIENNEQ 289
              NH+I+VSD +FKNRWS+ +SSDL  L SE++N +SS+RFS        S  R    N  
Sbjct:   247 FNHRIVVSDAVFKNRWSNITSSDLTFLTSEMLNSVSSDRFS--------SVDRVHRGN-- 296

Query:   290 ILKIKEEMEMKR-LFENKFST 309
              L+ KE+MEMKR L ++K S+
Sbjct:   297 -LRDKEDMEMKRMLIKHKDSS 316

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2140069 AT4G40070 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 64/142 (45%), Positives = 86/142 (60%)

Query:    14 SPSP-DTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFANTQIHNPALIRST 72
             SPSP D  +   PS   V  +L  +F LT +L +Y + C R++   +     N A   S 
Sbjct:    32 SPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRANDGS- 90

Query:    73 SRFSGIDKAVIESLPFFRFSSLKGSKQG---LECAVCLSKFEDTEILRLLPKCKHAFHIS 129
             SR  G+D AV+ES P F +SS+K SK G   LECA+CL++ ED E +RLLP C H FHI 
Sbjct:    91 SRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHID 150

Query:   130 CIDQWLEKHSSCPLCRLKVNAE 151
             CID WL  H++CP+CR  + A+
Sbjct:   151 CIDTWLYSHATCPVCRSNLTAK 172

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2151421 AT5G17600 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 69/178 (38%), Positives = 97/178 (54%)

Query:     1 MLFHVEAQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHR----ASS 56
             ++F     S   D  S  + S+F P L  +IGIL    IL     L +K+CHR    +SS
Sbjct:    32 LIFPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSS 91

Query:    57 LFANTQIHNPALIRSTSRFS----GIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFED 112
                N   +      ST R S    G+++++I+S+  +++ S  G   G +C+VCLS+FE+
Sbjct:    92 ETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEE 151

Query:   113 TEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA-EDPTIFAYSNSMRFMFNNS 169
              E LRLLPKC HAFH+ CID WL+ HS+CPLCR  V    +PT     N    + N S
Sbjct:   152 NESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQS 209

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2096444 AT3G03550 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 42/102 (41%), Positives = 65/102 (63%)

Query:    77 GIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE 136
             G+D+++I+S+  +++  + G  +  +C+VCLS+F++ E LRLLPKC HAFH+ CID WL+
Sbjct:   133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192

Query:   137 KHSSCPLCR-LKVNAEDPTIFAYSNSMRFMFNNSERREDSNI 177
              HS+CPLCR   V +    I   +N      NNS    D ++
Sbjct:   193 SHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNSISTGDDSV 234

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2044757 ATL9 "Arabidopsis toxicos en levadura 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 60/162 (37%), Positives = 93/162 (57%)

Query:    16 SPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRA------SSLFANTQIHNPALI 69
             +P   +  KP+  VV+ ++ V+F++ F ++  + FC R+      SS+F +T     + +
Sbjct:    38 TPPGTTKTKPNDPVVV-VITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQV 96

Query:    70 RSTSRFS--GIDKAVIESLPFFRFSSLKG---SKQGLECAVCLSKFEDTEILRLLPKCKH 124
                 R +  G+D   IE+ P F +S +K     K G+ECAVCL +FED E LRL+P C H
Sbjct:    97 VRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCH 156

Query:   125 AFHISCIDQWLEKHSSCPLCR--LKVNAE---DPTIFAYSNS 161
              FH  C+D WL +HS+CPLCR  L +N +   D +  +YS +
Sbjct:   157 VFHADCVDVWLSEHSTCPLCRADLVLNQQGDDDDSTESYSGT 198

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2207026 AT1G72200 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 50/130 (38%), Positives = 78/130 (60%)

Query:    21 SNFKPSLAVVIGILCVMFILTFILLLYAKFC-HRASSL-FANTQIHNPALIRSTSRFSGI 78
             S F P++A+++ +L  +F       +Y + C  R   + + N       L  +  +  G+
Sbjct:    57 SRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGL 116

Query:    79 DKAVIESLPFFRFSSLKG---SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL 135
             D ++IE+ P F++S++K     K+ LEC+VCL++FED E LRL+PKC H FH  CID WL
Sbjct:   117 DASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL 176

Query:   136 EKHSSCPLCR 145
               H++CPLCR
Sbjct:   177 RSHTTCPLCR 186

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2122358 AT4G09110 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 58/182 (31%), Positives = 94/182 (51%)

Query:     1 MLFHVEAQSIADDSPSPDTVSNFKPSLAVVIGILCVMFILTFILLLYAKFCHRASSLFAN 60
             +L +V  Q    +S   +  +NF     + I +L +   L+ +     K  +RA    A+
Sbjct:    25 LLPYVTCQQ-ESESVDRNRKTNFPTETVIAIIVLAIFISLSMVACFLHKTFYRAEVEAAS 83

Query:    61 TQIHNPALIRSTSRFSGIDKAVIESLPFFRFSSLKG---SKQGLECAVCLSKFEDTEILR 117
              ++ +     S +R  G++K ++ES P F +S +KG    K G+ECA+CLS+F D E LR
Sbjct:    84 QEVFH-----SRAR-RGLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLR 137

Query:   118 LLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNI 177
              +P C H FH +CID WL   S+CP CR  ++ +    + Y  +      N +R E S +
Sbjct:   138 WMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGESYPYPIT-DLETGNEQRDEHSLL 196

Query:   178 EL 179
             +L
Sbjct:   197 QL 198

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2206722 AT1G35330 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 64/162 (39%), Positives = 91/162 (56%)

Query:    28 AVVIGILCVMFILTFILLLYAKFCHRASSLF-----ANTQI--HNP-ALIRSTSRFSGID 79
             AV+I +L  MF L F +L     C++ ++       ++T+   H   A  R TSR  G+ 
Sbjct:    47 AVIIAML--MFTLLFSMLACC-VCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSR--GLG 101

Query:    80 KAVIESLPFFRFSSLKG---SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE 136
             K VI S P F +S +KG    K G+ECA+CL++FED E LRL+P C HAFH SCID WL 
Sbjct:   102 KDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLS 161

Query:   137 KHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIE 178
               S+CP+CR  +    P   +  NS+ + F      +D ++E
Sbjct:   162 SRSTCPVCRASL---PPKPGSDQNSL-YPFIRPHDNQDMDLE 199

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2096309 ATL6 "Arabidopsis toxicos en levadura 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 7.8e-21, P = 7.8e-21
 Identities = 55/145 (37%), Positives = 81/145 (55%)

Query:     7 AQSIADDSPSPDTVSNFKPSLAVVIGIL-CVMFILTFILLLYAKFCHRASSLFANTQ--I 63
             +QS    +  P       P++AV++ IL   +F + F  + Y + C        +     
Sbjct:    29 SQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSI-YFRHCSGVPDAGVSPAGGA 87

Query:    64 HNPALIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQG---LECAVCLSKFEDTEILRLLP 120
              + A + + +R  G+D +V+E+ P F +S +K  K G   LECA+CL++FED E LRLLP
Sbjct:    88 RSRATVNAAAR--GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLP 145

Query:   121 KCKHAFHISCIDQWLEKHSSCPLCR 145
             KC H FH  CID WLE H +CP+CR
Sbjct:   146 KCDHVFHPHCIDAWLEAHVTCPVCR 170

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009814 "defense response, incompatible interaction" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5XF85	ATL42_ARATH	6, ., 3, ., 2, ., -	0.4965	0.9060	0.8703	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016691001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (423 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-17
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	8e-14
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	6e-13
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	7e-10
smart00184	40	smart00184, RING, Ring finger	2e-09
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-09
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	7e-09
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	9e-08
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	2e-06
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	3e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	3e-04
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	0.001
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	0.001

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 74.4 bits (183), Expect = 4e-17
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
           EC +CL +FE  E + +LP C H FH  C+D+WL   ++CPLCR
Sbjct: 2   ECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 65.2 bits (159), Expect = 8e-14
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKV 148
           EC +CL +F +     +L  C H F  SCID+WL+   ++CPLCR  +
Sbjct: 1   ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 63.2 bits (154), Expect = 6e-13
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 9/52 (17%)

Query: 103 CAVCLSKFEDTEILRLLP---------KCKHAFHISCIDQWLEKHSSCPLCR 145
           CA+C + F+ T      P         +C HAFH+ CI +WL+  ++CPLCR
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 53.7 bits (129), Expect = 7e-10
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
           LEC +CL    D  +L     C H F   CI ++L+K S CP+CR
Sbjct: 3   LECPICLDLLRDPVVL---TPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLC 144
           C +CL ++       +LP C H F  SCI +WLE  +++CP+C
Sbjct: 1   CPICLEEYLKD--PVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKV 148
           G+ECA+C+S F   + LR+LP C H FH+ C+D+WL  +S  CP+CR  +
Sbjct: 323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLC 144
           C +CL + +D   + +LP C H F   CI  WLE  + +CPLC
Sbjct: 1   CPICLEEPKD--PVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 52.5 bits (126), Expect = 9e-08
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 102 ECAVCLSKFEDTEI----LRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
           ECA+C+ K  D EI      +L  C H F I CID W ++ ++CP+CR
Sbjct: 176 ECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 12/64 (18%)

Query: 103 CAVCLSKFEDT------------EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150
           CA+C +    T            E   +   C HAFH  CI +WL+    CPL R     
Sbjct: 23  CAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82

Query: 151 EDPT 154
            D  
Sbjct: 83  ADGG 86

Length = 88

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS---CPLCR 145
           C  C    +D  ++    KCKH FH+ CI +WL   +S   CP+CR
Sbjct: 35  CPQCKFPGDDCPLV--WGKCKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 9/55 (16%)

Query: 103 CAVCLSKFEDT------EILRLLPK---CKHAFHISCIDQWLEKHSSCPLCRLKV 148
           C +C+ +            L + PK   C H  H+ C+  WLE+  +CP+CR  V
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344

Length = 491

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 102  ECAVC---LSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKV 148
            ECA+C   L   + +   +    CK+ FH  C+ +W      S+CPLCR ++
Sbjct: 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 99  QGLECAVCLSKFEDTEILRLLPKCKH-AFHISCIDQWLEKHSSCPLCRLKVN 149
           +   C +CL +  +      LP C H      C  + L     CP+CR  + 
Sbjct: 1   EDDLCVICLERPRNV---VFLP-CGHLCLCEECAKR-LRSKKKCPICRQPIE 47

Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	99.94
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.67
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.33
PHA02929	238	N1R/p28-like protein; Provisional	99.14
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.06
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.04
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.94
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.82
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.73
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.72
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.69
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.66
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.66
PHA02926	242	zinc finger-like protein; Provisional	98.59
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.53
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.49
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.49
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.48
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.46
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.46
PF14634	44	zf-RING_5: zinc-RING finger domain	98.41
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.38
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.36
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.25
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.24
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.17
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.17
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.05
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.04
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.04
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.95
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	97.94
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.91
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.91
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.9
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.88
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.82
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.77
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.65
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.51
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.45
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.44
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.35
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.32
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.25
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.16
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.99
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.92
KOG4445	368	consensus Uncharacterized conserved protein, conta	96.92
PF02148	63	zf-UBP: Zn-finger in ubiquitin-hydrolases and othe	96.83
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	96.76
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.56
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.56
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.55
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.45
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	96.36
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.31
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.01
COG5152	259	Uncharacterized conserved protein, contains RING a	95.99
KOG2660	331	consensus Locus-specific chromosome binding protei	95.86
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.62
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.56
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.37
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.3
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.06
PF04641	260	Rtf2: Rtf2 RING-finger	94.76
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.63
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.58
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.24
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.17
KOG4739	233	consensus Uncharacterized protein involved in syna	94.09
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.02
PHA03096	284	p28-like protein; Provisional	93.89
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	93.83
PHA02825	162	LAP/PHD finger-like protein; Provisional	93.83
PHA02862	156	5L protein; Provisional	93.82
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.8
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.44
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.21
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	93.11
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.05
smart00290	50	ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like	92.73
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.54
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	91.54
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.35
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.98
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	89.61
KOG1001	674	consensus Helicase-like transcription factor HLTF/	89.49
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	89.48
KOG0298	1394	consensus DEAD box-containing helicase-like transc	88.81
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	88.73
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	87.88
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	87.86
COG5236	493	Uncharacterized conserved protein, contains RING Z	87.58
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	86.22
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	85.9
KOG1940	276	consensus Zn-finger protein [General function pred	85.09
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	84.47
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	84.23
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	83.79
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	83.71
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	82.98
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	82.39
KOG3002	299	consensus Zn finger protein [General function pred	80.49
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	80.44

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=99.94  E-value=1.6e-28  Score=248.53  Aligned_cols=127  Identities=23%  Similarity=0.318  Sum_probs=109.0

Q ss_pred             cCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCccccCcchhhccCCCccccc
Q 041871           95 KGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERRED  174 (415)
Q Consensus        95 ~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~  174 (415)
                      .+..+.++||||||.++.....++...|.|.||..|+..|  ...+||+||+...+.....            .....++
T Consensus       170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p~~ve~------------~~c~~c~  235 (493)
T KOG0804|consen  170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSPSVVES------------SLCLACG  235 (493)
T ss_pred             CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcCcchhhh------------hhhhhhc
Confidence            3456889999999999988866655569999999999999  6689999999876431111            1122446


Q ss_pred             CcccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhccccceEEeccc
Q 041871          175 SNIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSDV  239 (415)
Q Consensus       175 ~~~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~HRiI~S~~  239 (415)
                      ...+||+|.+||++|||||..|||.|||    +|++|+|+++++++++|||+||+||||+++++.
T Consensus       236 ~~~~LwicliCg~vgcgrY~eghA~rHw----eet~H~yalel~tqrVWDYAGDnYVhRl~~~~~  296 (493)
T KOG0804|consen  236 CTEDLWICLICGNVGCGRYKEGHARRHW----EETGHCYALELETQRVWDYAGDNYVHRLPQSKT  296 (493)
T ss_pred             ccccEEEEEEccceecccccchhHHHHH----HhhcceEEEeecceeeeecccchhhhhccccCC
Confidence            6789999999999999999999999999    999999999999999999999999999999987

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.5e-16  Score=159.86  Aligned_cols=78  Identities=33%  Similarity=0.844  Sum_probs=67.5

Q ss_pred             ccCCCCHHHHhhCCceeeecCcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCC-CCcccccccCCC
Q 041871           74 RFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-CPLCRLKVNAED  152 (415)
Q Consensus        74 r~~gl~~~~i~~Lp~~~~~~~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~s-CPlCR~~v~~~~  152 (415)
                      +..++.+..+.++|...|..........+|+||||+|+.+++++.|| |+|.||..||++||..+.+ ||+|+..+....
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            34577899999999999987666554579999999999999999999 9999999999999988754 999999876543

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.33  E-value=4.4e-13  Score=96.51  Aligned_cols=44  Identities=55%  Similarity=1.263  Sum_probs=40.2

Q ss_pred             CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccc
Q 041871          101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR  145 (415)
Q Consensus       101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR  145 (415)
                      ++|+||++.|..++.+..++ |+|.||..||..|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            37999999999988999998 999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.14  E-value=3.1e-11  Score=116.63  Aligned_cols=75  Identities=32%  Similarity=0.690  Sum_probs=57.6

Q ss_pred             cCCCCHHHHhhCCceeeec--CcCCcCCCcccccccccccccc----eEecCccccccchhHHHHHHhcCCCCCcccccc
Q 041871           75 FSGIDKAVIESLPFFRFSS--LKGSKQGLECAVCLSKFEDTEI----LRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV  148 (415)
Q Consensus        75 ~~gl~~~~i~~Lp~~~~~~--~~~~~e~~~C~ICle~~~~~~~----~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v  148 (415)
                      ..+..+..++.+|.+....  ......+.+|+||++.+..+..    +.+++.|+|.||..||..|+..+.+||+||..+
T Consensus       147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~  226 (238)
T PHA02929        147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF  226 (238)
T ss_pred             hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence            3566889999999875432  2233456799999999876531    234555999999999999999999999999977


Q ss_pred             c
Q 041871          149 N  149 (415)
Q Consensus       149 ~  149 (415)
                      .
T Consensus       227 ~  227 (238)
T PHA02929        227 I  227 (238)
T ss_pred             e
Confidence            5

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=5.3e-11  Score=116.85  Aligned_cols=53  Identities=43%  Similarity=1.155  Sum_probs=47.5

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNA  150 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~  150 (415)
                      .+.+.+|+|||+.|...+.++++| |+|.||..|+++|+. ....||+||..+++
T Consensus       320 a~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         320 ADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             cCCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            345689999999999999999999 999999999999998 45679999999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.04  E-value=1.4e-10  Score=92.85  Aligned_cols=45  Identities=42%  Similarity=0.997  Sum_probs=35.2

Q ss_pred             CCcccccccccccc----------cceEecCccccccchhHHHHHHhcCCCCCccc
Q 041871          100 GLECAVCLSKFEDT----------EILRLLPKCKHAFHISCIDQWLEKHSSCPLCR  145 (415)
Q Consensus       100 ~~~C~ICle~~~~~----------~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR  145 (415)
                      +..|+||++.|.++          -.+... .|||.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            44699999999433          233334 4999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.5e-10  Score=114.71  Aligned_cols=71  Identities=27%  Similarity=0.697  Sum_probs=52.2

Q ss_pred             CCHHHHhhCCceeeecCcCCcCCCccccccccc-ccc---------cceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871           78 IDKAVIESLPFFRFSSLKGSKQGLECAVCLSKF-EDT---------EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK  147 (415)
Q Consensus        78 l~~~~i~~Lp~~~~~~~~~~~e~~~C~ICle~~-~~~---------~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~  147 (415)
                      ..++.-+-+|+....+.  ..++..|.||++++ ..+         .+.+.+| |||+||-+|+..|++++.+||+||.+
T Consensus       267 ~~kdl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p  343 (491)
T COG5243         267 ATKDLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRP  343 (491)
T ss_pred             HhhHHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCc
Confidence            34455555665554443  34567999999994 433         1335688 99999999999999999999999999


Q ss_pred             ccCC
Q 041871          148 VNAE  151 (415)
Q Consensus       148 v~~~  151 (415)
                      +..+
T Consensus       344 ~ifd  347 (491)
T COG5243         344 VIFD  347 (491)
T ss_pred             cccc
Confidence            6543

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=4e-09  Score=103.34  Aligned_cols=51  Identities=33%  Similarity=0.809  Sum_probs=44.3

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP  153 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~  153 (415)
                      ....|.+||+....+.   .+| |||+||..||..|......||+||..+.+.+.
T Consensus       238 a~~kC~LCLe~~~~pS---aTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPS---ATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCceEEEecCCCCCC---cCc-CcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            4579999999987773   566 99999999999999999999999999887654

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=5.2e-09  Score=99.84  Aligned_cols=55  Identities=27%  Similarity=0.712  Sum_probs=44.2

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcC---CCCCcccccccCCCCCc
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH---SSCPLCRLKVNAEDPTI  155 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v~~~~~~~  155 (415)
                      .....+|.|||+.-+++   +++. |||.||..||.+||+.+   ..||+|+..+..+.+.+
T Consensus        44 ~~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP  101 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP  101 (230)
T ss_pred             CCCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence            35577999999997776   3444 99999999999999754   35999999998766554

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.72  E-value=7.6e-09  Score=96.92  Aligned_cols=54  Identities=26%  Similarity=0.710  Sum_probs=42.8

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhc----------------CCCCCcccccccCCCCCc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----------------HSSCPLCRLKVNAEDPTI  155 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----------------~~sCPlCR~~v~~~~~~~  155 (415)
                      .+..+|+||++.+.++   .+++ |||.||..||..|+..                ...||+||..+...+...
T Consensus        16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP   85 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP   85 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence            4568999999998766   3455 9999999999999852                246999999997655443

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.69  E-value=1.3e-08  Score=71.07  Aligned_cols=44  Identities=52%  Similarity=1.255  Sum_probs=35.6

Q ss_pred             cccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccc
Q 041871          102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKV  148 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v  148 (415)
                      +|+||++.+.  ......+ |+|.||..|+..|+.. ...||+|+..+
T Consensus         1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            5999999982  3344454 9999999999999987 67799998753

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.66  E-value=1.6e-08  Score=71.04  Aligned_cols=39  Identities=41%  Similarity=1.171  Sum_probs=32.4

Q ss_pred             ccccccccccccceEecCccccccchhHHHHHHhcCCCCCcc
Q 041871          103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLC  144 (415)
Q Consensus       103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlC  144 (415)
                      |+||++.+.++  +..++ |||.||..|+..|++.+..||+|
T Consensus         1 C~iC~~~~~~~--~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDP--VVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSE--EEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCc--CEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            89999998773  34566 99999999999999998899998

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.66  E-value=1.7e-08  Score=74.61  Aligned_cols=46  Identities=35%  Similarity=0.928  Sum_probs=38.2

Q ss_pred             CCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      +..|.||++....   +..+| |||. ||..|+..|++....||+||.++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4689999998543   56777 9999 999999999999999999999874

...

>PHA02926 zinc finger-like protein; Provisional

Probab=98.59  E-value=1.7e-08  Score=96.04  Aligned_cols=54  Identities=30%  Similarity=0.811  Sum_probs=40.2

Q ss_pred             CcCCCcccccccccccc-----cceEecCccccccchhHHHHHHhcC------CCCCcccccccC
Q 041871           97 SKQGLECAVCLSKFEDT-----EILRLLPKCKHAFHISCIDQWLEKH------SSCPLCRLKVNA  150 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~-----~~~~~lp~C~H~FH~~CI~~WL~~~------~sCPlCR~~v~~  150 (415)
                      ...+.+|+||+|..-..     ....+|+.|+|.||..||..|...+      .+||+||..+..
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            34567999999986332     1223566699999999999998743      359999998753

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.53  E-value=5.4e-08  Score=80.01  Aligned_cols=52  Identities=31%  Similarity=0.774  Sum_probs=38.7

Q ss_pred             CCCcccccccccccc--------cc-eEecCccccccchhHHHHHHhc---CCCCCcccccccC
Q 041871           99 QGLECAVCLSKFEDT--------EI-LRLLPKCKHAFHISCIDQWLEK---HSSCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~~--------~~-~~~lp~C~H~FH~~CI~~WL~~---~~sCPlCR~~v~~  150 (415)
                      ++..|.||...|+..        +. ..++..|+|.||.+||.+|+..   +..||+||.....
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            367899999988622        21 1233469999999999999985   4579999987643

>smart00504 Ubox Modified RING finger domain

Probab=98.49  E-value=1.2e-07  Score=72.45  Aligned_cols=49  Identities=24%  Similarity=0.562  Sum_probs=42.0

Q ss_pred             CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871          101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP  153 (415)
Q Consensus       101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~  153 (415)
                      ..|+||++.+.++   .+++ |||+|+..||..|+..+..||+|+..+...+.
T Consensus         2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l   50 (63)
T smart00504        2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDL   50 (63)
T ss_pred             cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhc
Confidence            4799999999887   3556 99999999999999988899999988865444

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=5.5e-08  Score=89.62  Aligned_cols=53  Identities=28%  Similarity=0.714  Sum_probs=43.5

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED  152 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~  152 (415)
                      .+...|+|||+.+.....  +-.+|||+||..||..-++....||+|+..+..+.
T Consensus       129 ~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             ccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            345789999999876543  33469999999999999999999999998776543

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.48  E-value=1e-07  Score=67.16  Aligned_cols=39  Identities=51%  Similarity=1.261  Sum_probs=33.4

Q ss_pred             ccccccccccccceEecCccccccchhHHHHHHh--cCCCCCcc
Q 041871          103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE--KHSSCPLC  144 (415)
Q Consensus       103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~--~~~sCPlC  144 (415)
                      |+||++.+..+.  .+++ |+|.||..||..|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988775  4566 999999999999998  45569998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.46  E-value=9.8e-08  Score=68.58  Aligned_cols=38  Identities=42%  Similarity=1.034  Sum_probs=28.9

Q ss_pred             ccccccccccccceEecCccccccchhHHHHHHhcC----CCCCcc
Q 041871          103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH----SSCPLC  144 (415)
Q Consensus       103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~sCPlC  144 (415)
                      |+||++.|.++.   .++ |||.|+..||..|++..    ..||+|
T Consensus         1 CpiC~~~~~~Pv---~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPV---SLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEE---E-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCcc---ccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999984   455 99999999999998653    359988

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=4.7e-08  Score=104.95  Aligned_cols=51  Identities=33%  Similarity=0.864  Sum_probs=43.9

Q ss_pred             CCCcccccccccccccc--eEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871           99 QGLECAVCLSKFEDTEI--LRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~--~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      .+..|+||+|.+..+..  ...+| |+|+||..|+..|+++..+||.||..+..
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            46799999999988654  56777 99999999999999999999999995443

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.41  E-value=1.7e-07  Score=67.67  Aligned_cols=44  Identities=32%  Similarity=0.852  Sum_probs=36.9

Q ss_pred             cccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccc
Q 041871          102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRL  146 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~  146 (415)
                      .|+||++.|.......+++ |||+||..|+..+......||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999995555667776 9999999999998755678999984

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.38  E-value=2.1e-07  Score=96.13  Aligned_cols=53  Identities=30%  Similarity=0.678  Sum_probs=44.7

Q ss_pred             cCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871           95 KGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE  151 (415)
Q Consensus        95 ~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~  151 (415)
                      ........|+||++.|..+.   +++ |+|.||..||..|+.....||+|+..+...
T Consensus        21 ~~Le~~l~C~IC~d~~~~Pv---itp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPV---LTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccccccCCCcCchhhhCcc---CCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            44556789999999998773   456 999999999999998888899999988654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00184 RING Ring finger

Probab=98.36  E-value=3e-07  Score=61.90  Aligned_cols=38  Identities=42%  Similarity=1.181  Sum_probs=31.4

Q ss_pred             ccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcc
Q 041871          103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLC  144 (415)
Q Consensus       103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlC  144 (415)
                      |+||++..   .....++ |+|.||..|+..|+. ....||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999883   3445666 999999999999998 56679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.4e-06  Score=90.76  Aligned_cols=51  Identities=29%  Similarity=0.845  Sum_probs=39.6

Q ss_pred             CCCccccccccccccc--------------ceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871           99 QGLECAVCLSKFEDTE--------------ILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~~~--------------~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~  150 (415)
                      ....|+||+..++--.              ...++| |.|+||..|+..|+.. +-.||+||.++++
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            3568999999874221              123456 9999999999999984 5589999998864

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.24  E-value=6.2e-07  Score=72.60  Aligned_cols=49  Identities=31%  Similarity=0.632  Sum_probs=34.4

Q ss_pred             cccccccccccccceEe-cCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871          102 ECAVCLSKFEDTEILRL-LPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~-lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      .|+-|...+..++...+ .-.|+|.||.+||.+||..+..||+||+....
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            33334333334443322 22599999999999999999999999987654

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1e-06  Score=85.86  Aligned_cols=53  Identities=34%  Similarity=0.716  Sum_probs=43.4

Q ss_pred             cCCCccccccccccccc-------ceEecCccccccchhHHHHHH--hcCCCCCcccccccCC
Q 041871           98 KQGLECAVCLSKFEDTE-------ILRLLPKCKHAFHISCIDQWL--EKHSSCPLCRLKVNAE  151 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~-------~~~~lp~C~H~FH~~CI~~WL--~~~~sCPlCR~~v~~~  151 (415)
                      .++..|+||-..+....       .+-.|. |+|+||..||.-|.  .++++||.|+..++..
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            35679999999987665       556777 99999999999995  4577899999988643

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=8.8e-07  Score=92.84  Aligned_cols=55  Identities=27%  Similarity=0.577  Sum_probs=43.1

Q ss_pred             CCcccccccccccccceEecCccccccchhHHHHHHhc-----CCCCCcccccccCCCCCcccc
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----HSSCPLCRLKVNAEDPTIFAY  158 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~~v~~~~~~~~~~  158 (415)
                      +..|||||+....+.    ++.|||+||..||.+++..     ...||+|+..+.+++..+...
T Consensus       186 ~~~CPICL~~~~~p~----~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~  245 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPV----RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI  245 (513)
T ss_pred             CCcCCcccCCCCccc----ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence            679999999866552    2249999999999996643     346999999999887766543

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1.9e-06  Score=83.83  Aligned_cols=51  Identities=37%  Similarity=0.814  Sum_probs=41.5

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHH-HHhcCCC-CCcccccccCCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ-WLEKHSS-CPLCRLKVNAEDP  153 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~-WL~~~~s-CPlCR~~v~~~~~  153 (415)
                      .+..|+||++....+   ..++ |||+||..||.. |-.++.. ||+||+.+.+.+.
T Consensus       214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            467899999997666   3455 999999999999 8766655 9999998877654

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.04  E-value=7.1e-07  Score=98.38  Aligned_cols=69  Identities=26%  Similarity=0.645  Sum_probs=47.1

Q ss_pred             HHHhhCCceeeecCcCCcCCCccccccccccccc---ceEecCccccccchhHHHHHHhc--CCCCCccccccc
Q 041871           81 AVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTE---ILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKVN  149 (415)
Q Consensus        81 ~~i~~Lp~~~~~~~~~~~e~~~C~ICle~~~~~~---~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~v~  149 (415)
                      ...+.|..++.+-.....+..+|+||+..+..-+   .-..++.|.|.||..|+.+|+..  .++||+||..+.
T Consensus      1450 s~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1450 SFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hHHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3344444444443344456779999999876221   11344569999999999999985  467999997764

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.04  E-value=1e-06  Score=88.16  Aligned_cols=58  Identities=33%  Similarity=0.717  Sum_probs=48.5

Q ss_pred             cCcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871           93 SLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        93 ~~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~  154 (415)
                      .....+....|-||.+.|..+   .++| |+|.||.-||..+|..+..||.|+..+...+..
T Consensus        16 slk~lD~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr   73 (442)
T KOG0287|consen   16 SLKTLDDLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR   73 (442)
T ss_pred             hhhhhHHHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence            344556677999999999888   3566 999999999999999999999999988765543

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.95  E-value=6.5e-06  Score=82.44  Aligned_cols=55  Identities=22%  Similarity=0.539  Sum_probs=40.2

Q ss_pred             CCcccccccc-ccccc-ceEecCccccccchhHHHHHHh-cCCCCCcccccccCCCCCc
Q 041871          100 GLECAVCLSK-FEDTE-ILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAEDPTI  155 (415)
Q Consensus       100 ~~~C~ICle~-~~~~~-~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~~~~~  155 (415)
                      +..||+|... |-.+. .+.+.+ |||.||..||+..+. ....||.|+..+...+...
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~   60 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV   60 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence            4589999996 33333 333344 999999999999554 4457999999988776543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=2.1e-06  Score=68.97  Aligned_cols=50  Identities=32%  Similarity=0.781  Sum_probs=36.0

Q ss_pred             CCccccccccccc--------ccce-EecCccccccchhHHHHHHhcC---CCCCccccccc
Q 041871          100 GLECAVCLSKFED--------TEIL-RLLPKCKHAFHISCIDQWLEKH---SSCPLCRLKVN  149 (415)
Q Consensus       100 ~~~C~ICle~~~~--------~~~~-~~lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v~  149 (415)
                      +.+|-||.-.|+.        ++.. .++-.|.|.||.+||.+|+...   ..||+||....
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            3488888888852        2211 2333699999999999999753   45999998754

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.91  E-value=3.6e-06  Score=82.90  Aligned_cols=54  Identities=31%  Similarity=0.607  Sum_probs=44.8

Q ss_pred             cCcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871           93 SLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        93 ~~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      +..+.+....|-||-+.|..+-   .++ |||.||.-||...|..+..||+||.+...
T Consensus        18 SL~~LDs~lrC~IC~~~i~ip~---~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          18 SLKGLDSMLRCRICDCRISIPC---ETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             chhcchhHHHhhhhhheeecce---ecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence            3455666779999999998772   344 99999999999999999999999987654

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.91  E-value=5.2e-06  Score=66.26  Aligned_cols=51  Identities=25%  Similarity=0.539  Sum_probs=39.1

Q ss_pred             CCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCCC
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDPT  154 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~~  154 (415)
                      ...|+||.+.|.++.   +++ |||.|...||..|+.. +.+||+|+..+...+..
T Consensus         4 ~f~CpIt~~lM~dPV---i~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~   55 (73)
T PF04564_consen    4 EFLCPITGELMRDPV---ILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI   55 (73)
T ss_dssp             GGB-TTTSSB-SSEE---EET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE
T ss_pred             ccCCcCcCcHhhCce---eCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce
Confidence            568999999999984   556 9999999999999998 78899999888765543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=4e-06  Score=78.88  Aligned_cols=46  Identities=39%  Similarity=0.906  Sum_probs=39.3

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccc
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRL  146 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~  146 (415)
                      ..+...|+||++.|..+   .+++ |+|.||..|+..++.....||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence            34677999999999999   5677 9999999999998774457999993

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=4.9e-06  Score=70.48  Aligned_cols=49  Identities=33%  Similarity=0.707  Sum_probs=36.1

Q ss_pred             CCCcccccccccc------------cccce-EecCccccccchhHHHHHHhcCCCCCccccc
Q 041871           99 QGLECAVCLSKFE------------DTEIL-RLLPKCKHAFHISCIDQWLEKHSSCPLCRLK  147 (415)
Q Consensus        99 e~~~C~ICle~~~------------~~~~~-~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~  147 (415)
                      .-+.|+||...+-            ..+.. ..-..|+|.||..||.+||+....||+|...
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence            4568999877651            11222 2233599999999999999999999999664

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.82  E-value=1.4e-05  Score=59.28  Aligned_cols=42  Identities=24%  Similarity=0.821  Sum_probs=31.9

Q ss_pred             cccccccccccccceEecCccc-----cccchhHHHHHHhcC--CCCCccc
Q 041871          102 ECAVCLSKFEDTEILRLLPKCK-----HAFHISCIDQWLEKH--SSCPLCR  145 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~~--~sCPlCR  145 (415)
                      .|.||++ ...++...+.| |.     |.+|..|+.+|+...  .+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899999 33444445677 75     899999999999654  4799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.77  E-value=1.7e-05  Score=57.48  Aligned_cols=34  Identities=32%  Similarity=0.791  Sum_probs=21.0

Q ss_pred             cccccccccccc-ceEecCccccccchhHHHHHHhcC
Q 041871          103 CAVCLSKFEDTE-ILRLLPKCKHAFHISCIDQWLEKH  138 (415)
Q Consensus       103 C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~  138 (415)
                      |+||.+ |...+ .-++|+ |||+|+..||.+++...
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence            899999 75543 446788 99999999999998753

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.65  E-value=1.3e-05  Score=63.75  Aligned_cols=50  Identities=32%  Similarity=0.825  Sum_probs=23.6

Q ss_pred             CCccccccccccccc-c-eEecC--ccccccchhHHHHHHhc---C--------CCCCccccccc
Q 041871          100 GLECAVCLSKFEDTE-I-LRLLP--KCKHAFHISCIDQWLEK---H--------SSCPLCRLKVN  149 (415)
Q Consensus       100 ~~~C~ICle~~~~~~-~-~~~lp--~C~H~FH~~CI~~WL~~---~--------~sCPlCR~~v~  149 (415)
                      ..+|.||++.+..+. . ..+.+  .|++.||..||..||..   .        ..||.|+.++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            358999999876222 1 22332  69999999999999963   1        13999998774

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=4e-05  Score=78.20  Aligned_cols=48  Identities=33%  Similarity=0.948  Sum_probs=35.5

Q ss_pred             CcccccccccccccceEecCccccccchhHHHHHHhcC---CCCCcccccc
Q 041871          101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH---SSCPLCRLKV  148 (415)
Q Consensus       101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v  148 (415)
                      ..|.||.+-+.....+.-+..|||+||..|+..|+...   ..||+|+-.+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            48999955554444554444599999999999999863   4699998433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=4.1e-05  Score=83.74  Aligned_cols=53  Identities=32%  Similarity=0.799  Sum_probs=42.4

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccCCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~~~~  154 (415)
                      .+-..|++|-..+++-    ++++|+|+||..||..-+. ++..||.|-..+.+.|..
T Consensus       641 K~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~  694 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH  694 (698)
T ss_pred             HhceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence            4567999999776554    3446999999999999875 567899999998877653

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.44  E-value=3.4e-05  Score=84.17  Aligned_cols=52  Identities=21%  Similarity=0.408  Sum_probs=41.7

Q ss_pred             CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED  152 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~  152 (415)
                      ...|++|+..+.++......+ |+|.||..||..|-..-.+||+||..+..-.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~  174 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVK  174 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheee
Confidence            346888888877665554455 9999999999999988899999999876433

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.35  E-value=4.5e-05  Score=59.69  Aligned_cols=52  Identities=31%  Similarity=0.685  Sum_probs=25.4

Q ss_pred             CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCcc
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIF  156 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~~  156 (415)
                      ...|++|.+.++.+..   +..|.|+||..||..-+.  ..||+|+.+.-..|...+
T Consensus         7 lLrCs~C~~~l~~pv~---l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~N   58 (65)
T PF14835_consen    7 LLRCSICFDILKEPVC---LGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQIN   58 (65)
T ss_dssp             TTS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----
T ss_pred             hcCCcHHHHHhcCCce---eccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhh
Confidence            4589999999988843   346999999999988544  459999988766555443

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=3.3e-05  Score=78.05  Aligned_cols=51  Identities=31%  Similarity=0.652  Sum_probs=41.7

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA  150 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~  150 (415)
                      ...+..|+|||+.++..   +.++.|.|.||.+||..-+.. +..||.||+.+..
T Consensus        40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S   91 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS   91 (381)
T ss_pred             hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence            45677999999998665   455679999999999997764 6789999998764

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00018  Score=72.96  Aligned_cols=49  Identities=31%  Similarity=0.775  Sum_probs=39.4

Q ss_pred             cCCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      +...+|.|||.+-   ....+|| |.|. .|..|.+...-++..||+||.++..
T Consensus       288 ~~gkeCVIClse~---rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSES---RDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCC---cceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            3467999999984   4456888 9998 8999988865567889999998853

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00024  Score=73.07  Aligned_cols=49  Identities=35%  Similarity=0.835  Sum_probs=38.1

Q ss_pred             CCCccccccccccccc-ceEecCccccccchhHHHHHHhc--CCCCCccccc
Q 041871           99 QGLECAVCLSKFEDTE-ILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLK  147 (415)
Q Consensus        99 e~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~  147 (415)
                      .+.+||||++.+..+. ..+..+.|||.|..+||..||.+  ...||.|...
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            3569999999997654 44445569999999999999953  2359999754

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.00039  Score=70.94  Aligned_cols=54  Identities=30%  Similarity=0.902  Sum_probs=40.7

Q ss_pred             cCCCccccccccccccc----ceEecCccccccchhHHHHHHh--c-----CCCCCcccccccCC
Q 041871           98 KQGLECAVCLSKFEDTE----ILRLLPKCKHAFHISCIDQWLE--K-----HSSCPLCRLKVNAE  151 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~----~~~~lp~C~H~FH~~CI~~WL~--~-----~~sCPlCR~~v~~~  151 (415)
                      ..+.+|.||++..-...    ...++|+|.|.||..||..|-.  +     .+.||.||.....-
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence            34679999999975544    1234677999999999999973  3     46799999876543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.00026  Score=53.76  Aligned_cols=45  Identities=29%  Similarity=0.664  Sum_probs=33.4

Q ss_pred             CcccccccccccccceEecCccccc-cchhHHHH-HHhcCCCCCccccccc
Q 041871          101 LECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQ-WLEKHSSCPLCRLKVN  149 (415)
Q Consensus       101 ~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~-WL~~~~sCPlCR~~v~  149 (415)
                      .+|.||+|.-.+.   .+. .|||. .|..|-.+ |-..+..||+||.++.
T Consensus         8 dECTICye~pvds---VlY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDS---VLY-TCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchH---HHH-HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            6999999874443   233 49997 77788655 5446788999999874

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=96.92  E-value=0.00034  Score=69.57  Aligned_cols=55  Identities=25%  Similarity=0.799  Sum_probs=44.3

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhc-----------------------CCCCCcccccccCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----------------------HSSCPLCRLKVNAEDP  153 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----------------------~~sCPlCR~~v~~~~~  153 (415)
                      .....|.|||--|..++...+++ |.|.||..|+.++|..                       ...||+||..+..+..
T Consensus       113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~  190 (368)
T KOG4445|consen  113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN  190 (368)
T ss_pred             CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence            34568999999999999888888 9999999999877631                       2249999999876543

>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.83  E-value=0.00017  Score=55.94  Aligned_cols=52  Identities=15%  Similarity=0.068  Sum_probs=45.4

Q ss_pred             ccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhccccc
Q 041871          177 IELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNH  232 (415)
Q Consensus       177 ~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~H  232 (415)
                      .++|+|+.|+..||+|+..+|+.+|+    ++++|.+..+..+..+|.+.-+.|++
T Consensus         9 ~~lw~CL~Cg~~~C~~~~~~Ha~~H~----~~~~H~l~v~~~~~~i~C~~C~~~v~   60 (63)
T PF02148_consen    9 SNLWLCLTCGYVGCGRYSNGHALKHY----KETGHPLAVSLSTGSIWCYACDDYVY   60 (63)
T ss_dssp             SSEEEETTTS-EEETTTSTSHHHHHH----HHHT--EEEETTTTCEEETTTTEEEE
T ss_pred             CceEEeCCCCcccccCCcCcHHHHhh----cccCCeEEEECCCCeEEEcCCCcEEe
Confidence            57999999999999999999999999    89999999999999999998877765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.00065  Score=67.64  Aligned_cols=47  Identities=26%  Similarity=0.605  Sum_probs=37.5

Q ss_pred             CCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA  150 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~  150 (415)
                      ..+|+||+....-+   ..++ |+|.||..||.--... ..+|++||.+++.
T Consensus         7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            56999999987666   3455 9999999999885444 4569999999865

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.56  E-value=0.0011  Score=68.83  Aligned_cols=54  Identities=28%  Similarity=0.706  Sum_probs=44.8

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP  153 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~  153 (415)
                      ..+...|++|...+.++...  + .|||.||..|+..|+..+..||.|+..+.....
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~   71 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE   71 (391)
T ss_pred             CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhc
Confidence            35678999999999888542  2 499999999999999999999999888765433

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.56  E-value=0.00093  Score=68.70  Aligned_cols=50  Identities=28%  Similarity=0.898  Sum_probs=39.9

Q ss_pred             cccccccccccccceEecCccccccchhHHHHHHhc--CCCCCcccccccCCCCCc
Q 041871          102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKVNAEDPTI  155 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~v~~~~~~~  155 (415)
                      -|-||-|.   ...+++-| |||..|..|+..|-..  ..+||.||..+...+...
T Consensus       371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi  422 (563)
T KOG1785|consen  371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI  422 (563)
T ss_pred             HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence            59999876   45566777 9999999999999643  567999999998765543

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.0012  Score=68.63  Aligned_cols=49  Identities=33%  Similarity=0.861  Sum_probs=41.8

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      ..+..|.||+..+..+.   .+| |||.||..||++-+.....||.||..+..
T Consensus        82 ~sef~c~vc~~~l~~pv---~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPV---VTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCc---ccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            45789999999988773   456 99999999999988877889999998864

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.0014  Score=63.00  Aligned_cols=59  Identities=22%  Similarity=0.568  Sum_probs=47.5

Q ss_pred             cCCcCCCcccccccccccccceEecCccccccchhHHHHHHhc--------CCCCCcccccccCCCCCc
Q 041871           95 KGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--------HSSCPLCRLKVNAEDPTI  155 (415)
Q Consensus        95 ~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~sCPlCR~~v~~~~~~~  155 (415)
                      .+++....|..|-..+..++.+++.  |-|.||..|+..|-..        ...||.|-.++.+.....
T Consensus        45 ~DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nlv  111 (299)
T KOG3970|consen   45 QDSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLV  111 (299)
T ss_pred             hhcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcccc
Confidence            3456678999999999999998765  9999999999999642        345999999887654333

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.00064  Score=69.09  Aligned_cols=45  Identities=29%  Similarity=0.665  Sum_probs=32.6

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ...+.|.||++...+   ...+| |||.-|  |..-- +....||+||..+.
T Consensus       303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            346799999999666   46777 999966  54442 23456999998774

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.31  E-value=0.0023  Score=49.04  Aligned_cols=43  Identities=33%  Similarity=0.696  Sum_probs=27.9

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhc--CCCCCc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPL  143 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~sCPl  143 (415)
                      .-...|||.+..|.+|..  .. +|+|+|-+..|..|++.  ...||+
T Consensus         9 ~~~~~CPiT~~~~~~PV~--s~-~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVK--SK-KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEE--ES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCCcC--cC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            345799999999988843  23 59999999999999944  345998

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=0.0023  Score=58.73  Aligned_cols=31  Identities=29%  Similarity=0.696  Sum_probs=27.7

Q ss_pred             CcCCCcccccccccccccceEecCccccccch
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHI  128 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~  128 (415)
                      .+...+|.||||++..++.+..|| |-.+||+
T Consensus       174 ~ddkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  174 KDDKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             cccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            345679999999999999999999 9999996

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.99  E-value=0.0032  Score=59.54  Aligned_cols=46  Identities=22%  Similarity=0.566  Sum_probs=38.5

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV  148 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v  148 (415)
                      -...|.||-.+|..+.   ++ .|||.||..|...-++....|-+|-...
T Consensus       195 IPF~C~iCKkdy~spv---vt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         195 IPFLCGICKKDYESPV---VT-ECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             Cceeehhchhhccchh---hh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence            3568999999999883   33 4999999999998888888999997654

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.86  E-value=0.003  Score=63.62  Aligned_cols=54  Identities=28%  Similarity=0.711  Sum_probs=44.6

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~  154 (415)
                      ....+|.+|-..|.+...+.   .|-|.||..||...|....+||.|...+....+.
T Consensus        13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl   66 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPL   66 (331)
T ss_pred             ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCcccc
Confidence            45679999999998876542   5999999999999999999999998877655433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.62  E-value=0.0043  Score=63.84  Aligned_cols=46  Identities=41%  Similarity=0.904  Sum_probs=37.5

Q ss_pred             CCccccccccccc-ccceEecCccccccchhHHHHHHhcC--CCCCcccc
Q 041871          100 GLECAVCLSKFED-TEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCRL  146 (415)
Q Consensus       100 ~~~C~ICle~~~~-~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPlCR~  146 (415)
                      +.-|..|-+.+.. ++.+.-+| |.|+||..|+...|.++  .+||.||.
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            4679999999854 34566788 99999999999998754  56999994

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.56  E-value=0.0045  Score=55.23  Aligned_cols=35  Identities=17%  Similarity=0.614  Sum_probs=29.4

Q ss_pred             CCcccccccccccccceEecCccc------cccchhHHHHHH
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCK------HAFHISCIDQWL  135 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~------H~FH~~CI~~WL  135 (415)
                      ..+|.||++.+...+.++.++ |+      |.||..|+.+|-
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence            569999999998866666666 66      899999999993

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.012  Score=57.40  Aligned_cols=55  Identities=16%  Similarity=0.292  Sum_probs=48.5

Q ss_pred             CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~  154 (415)
                      ...||||.+.+.+...+..|.+|||+|+.+|+.+.+.....||+|-.++...+..
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI  275 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII  275 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence            4579999999999998888888999999999999988889999998888766543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=0.012  Score=58.10  Aligned_cols=50  Identities=28%  Similarity=0.514  Sum_probs=37.3

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhc--CCCCCcccccccC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKVNA  150 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~v~~  150 (415)
                      ..+.+|++|-+.-..|-.  .. +|+|+||..||..-+..  ..+||.|-..+.+
T Consensus       237 t~~~~C~~Cg~~PtiP~~--~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHV--IG-KCGHIYCYYCIATSRLWDASFTCPLCGENVEP  288 (298)
T ss_pred             cCCceeeccCCCCCCCee--ec-cccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence            457799999998655532  33 49999999999885543  3579999877653

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.06  E-value=0.013  Score=68.05  Aligned_cols=70  Identities=27%  Similarity=0.570  Sum_probs=48.1

Q ss_pred             HHHHhhCCceeeec-CcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhc-----C-----CCCCcccccc
Q 041871           80 KAVIESLPFFRFSS-LKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----H-----SSCPLCRLKV  148 (415)
Q Consensus        80 ~~~i~~Lp~~~~~~-~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~-----~sCPlCR~~v  148 (415)
                      +....-||-+.... ....+.++.|.||+.+--.....+.|. |+|+||.+|...-|.+     .     -+||+|+.++
T Consensus      3465 kNEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3465 KNEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred             cchhhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence            33444555554322 123456789999998876666777887 9999999998765543     1     2599999887


Q ss_pred             cC
Q 041871          149 NA  150 (415)
Q Consensus       149 ~~  150 (415)
                      ..
T Consensus      3544 nH 3545 (3738)
T KOG1428|consen 3544 NH 3545 (3738)
T ss_pred             hh
Confidence            54

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.76  E-value=0.029  Score=55.15  Aligned_cols=58  Identities=22%  Similarity=0.436  Sum_probs=45.9

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCc
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI  155 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~  155 (415)
                      ......|||+...|........+..|||+|...||..- .....||+|-.++...|..+
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEE
Confidence            35567999999999766666666669999999999996 23557999999988766544

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.63  E-value=0.014  Score=48.68  Aligned_cols=33  Identities=30%  Similarity=0.850  Sum_probs=26.9

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHH
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCID  132 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~  132 (415)
                      .+...|++|-..+..+ ...+.| |||+||..|+.
T Consensus        76 ~~~~~C~vC~k~l~~~-~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNS-VFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCCc-eEEEeC-CCeEEeccccc
Confidence            3466899999999774 555777 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.013  Score=58.47  Aligned_cols=46  Identities=24%  Similarity=0.539  Sum_probs=38.2

Q ss_pred             CCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ...|-||...|..+.    ..+|+|.||..|...-++....|++|-....
T Consensus       241 Pf~c~icr~~f~~pV----vt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPV----VTKCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             Cccccccccccccch----hhcCCceeehhhhccccccCCcceecccccc
Confidence            456999999999883    3359999999999888888889999977653

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.24  E-value=0.053  Score=54.88  Aligned_cols=47  Identities=23%  Similarity=0.499  Sum_probs=37.0

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK  147 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~  147 (415)
                      .....||||+..-.++.-+-   .-|-+||..||-.++..+..||+=-.+
T Consensus       298 ~~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             CccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCc
Confidence            34568999999987774332   258999999999999999999985444

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.17  E-value=0.023  Score=60.54  Aligned_cols=51  Identities=29%  Similarity=0.757  Sum_probs=38.1

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHh-----cCCCCCcccccccCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-----KHSSCPLCRLKVNAE  151 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~v~~~  151 (415)
                      ..+..+|.+|-+.-++.   +.. .|.|.||.-||..+..     .+-+||+|-..+.-+
T Consensus       533 nk~~~~C~lc~d~aed~---i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDY---IES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             ccCceeecccCChhhhh---Hhh-hhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            34567999999885554   334 3999999999988864     256899997766543

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.09  E-value=0.022  Score=55.37  Aligned_cols=45  Identities=24%  Similarity=0.664  Sum_probs=33.3

Q ss_pred             cccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871          102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      .|..|.-.-. ++...++. |.|+||..|...-  ....||+|+..+..
T Consensus         5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~   49 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRI   49 (233)
T ss_pred             EeccccccCC-CCceeeee-chhhhhhhhcccC--Cccccccccceeee
Confidence            5777766544 66776676 9999999997763  22389999998654

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.02  E-value=0.03  Score=56.07  Aligned_cols=47  Identities=30%  Similarity=0.607  Sum_probs=36.3

Q ss_pred             CcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccc-cccC
Q 041871          101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRL-KVNA  150 (415)
Q Consensus       101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~-~v~~  150 (415)
                      ..|+.|-..+..+.+   ++.|+|.||.+||..-|. ....||.|.. .+..
T Consensus       275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll  323 (427)
T COG5222         275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL  323 (427)
T ss_pred             ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence            689999988877743   356999999999998654 5678999944 4433

>PHA03096 p28-like protein; Provisional

Probab=93.89  E-value=0.027  Score=56.33  Aligned_cols=37  Identities=30%  Similarity=0.743  Sum_probs=29.0

Q ss_pred             Cccccccccccccc----ceEecCccccccchhHHHHHHhc
Q 041871          101 LECAVCLSKFEDTE----ILRLLPKCKHAFHISCIDQWLEK  137 (415)
Q Consensus       101 ~~C~ICle~~~~~~----~~~~lp~C~H~FH~~CI~~WL~~  137 (415)
                      ..|.||++......    .-..|+.|.|.||..|+..|...
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~  219 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE  219 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence            58999999875432    22367789999999999999753

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=93.83  E-value=0.049  Score=40.01  Aligned_cols=41  Identities=37%  Similarity=1.036  Sum_probs=26.4

Q ss_pred             ccccccccccccceEecC-cccc---ccchhHHHHHHhc--CCCCCcc
Q 041871          103 CAVCLSKFEDTEILRLLP-KCKH---AFHISCIDQWLEK--HSSCPLC  144 (415)
Q Consensus       103 C~ICle~~~~~~~~~~lp-~C~H---~FH~~CI~~WL~~--~~sCPlC  144 (415)
                      |-||++.-.....+ +.| .|.=   ..|..|+..|+..  ...|++|
T Consensus         1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            77999987766533 455 2333   7899999999974  4569987

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=93.83  E-value=0.056  Score=49.65  Aligned_cols=50  Identities=24%  Similarity=0.664  Sum_probs=35.6

Q ss_pred             CcCCCcccccccccccccceEecC-cccc---ccchhHHHHHHhc--CCCCCcccccccC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLP-KCKH---AFHISCIDQWLEK--HSSCPLCRLKVNA  150 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp-~C~H---~FH~~CI~~WL~~--~~sCPlCR~~v~~  150 (415)
                      +..+..|-||.+....  .  ..| .|..   ..|..|+..|+..  ...|++|.+++..
T Consensus         5 s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          5 SLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            3456799999988532  2  234 2444   5699999999975  4469999987754

>PHA02862 5L protein; Provisional

Probab=93.82  E-value=0.045  Score=49.56  Aligned_cols=46  Identities=26%  Similarity=0.656  Sum_probs=34.3

Q ss_pred             CCcccccccccccccceEecCccc-----cccchhHHHHHHhc--CCCCCcccccccC
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCK-----HAFHISCIDQWLEK--HSSCPLCRLKVNA  150 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~--~~sCPlCR~~v~~  150 (415)
                      ...|=||.+.-++.    .-| |.     ...|..|+.+|+..  +..||+|+.++.-
T Consensus         2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            35899999985433    244 54     46899999999964  4569999998753

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.80  E-value=0.03  Score=58.13  Aligned_cols=47  Identities=23%  Similarity=0.685  Sum_probs=37.7

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhc--------CCCCCcccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--------HSSCPLCRL  146 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~sCPlCR~  146 (415)
                      ....|.||++..........+| |+|+||..|+..++..        .-.||-|..
T Consensus       183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            4568999999988778888898 9999999999998753        224776643

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=0.048  Score=55.73  Aligned_cols=49  Identities=24%  Similarity=0.523  Sum_probs=40.7

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      .++..|+||+..   +......| |+|.-|..||.+-+...+.|=.|+..+..
T Consensus       420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            567899999876   44445677 99999999999999999999999887754

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.21  E-value=0.071  Score=39.63  Aligned_cols=45  Identities=27%  Similarity=0.657  Sum_probs=21.9

Q ss_pred             ccccccccccccceEecC-ccccccchhHHHHHHh-cCCCCCcccccc
Q 041871          103 CAVCLSKFEDTEILRLLP-KCKHAFHISCIDQWLE-KHSSCPLCRLKV  148 (415)
Q Consensus       103 C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~WL~-~~~sCPlCR~~v  148 (415)
                      |++|.++++..+.- ..| .|++..|..|...-+. .+..||-||.+.
T Consensus         1 cp~C~e~~d~~d~~-~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKD-FYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT---SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCc-cccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            79999999544422 333 4889999999888765 366799999864

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=93.11  E-value=0.047  Score=61.05  Aligned_cols=51  Identities=27%  Similarity=0.746  Sum_probs=39.0

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhc-------CCCCCcccccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-------HSSCPLCRLKV  148 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-------~~sCPlCR~~v  148 (415)
                      ....+|.||++.+.....+--...|-|+||..||..|-..       .-.||.|....
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            3467999999999877766444458899999999999753       12499998533

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.05  E-value=0.049  Score=41.56  Aligned_cols=46  Identities=24%  Similarity=0.535  Sum_probs=33.3

Q ss_pred             CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871          101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED  152 (415)
Q Consensus       101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~  152 (415)
                      ..|..|...   +....++| |+|..+..|..-+  +-+.||.|-.++...+
T Consensus         8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence            355555544   33445777 9999999998776  5577999998887654

>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger

Probab=92.73  E-value=0.034  Score=40.61  Aligned_cols=38  Identities=13%  Similarity=0.203  Sum_probs=31.7

Q ss_pred             cccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhh
Q 041871          176 NIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEA  217 (415)
Q Consensus       176 ~~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~  217 (415)
                      ..++|+|+.|++++|+|+..+|+..|+    .+++|.+....
T Consensus         8 ~~~l~~CL~C~~~~c~~~~~~h~~~H~----~~t~H~~~~~~   45 (50)
T smart00290        8 IENLWLCLTCGQVGCGRYQLGHALEHF----EETGHPLVVKL   45 (50)
T ss_pred             cCCeEEecCCCCcccCCCCCcHHHHHh----hhhCCCEEEEc
Confidence            345999999999999999999999999    66777666544

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.54  E-value=0.044  Score=54.70  Aligned_cols=42  Identities=26%  Similarity=0.637  Sum_probs=31.5

Q ss_pred             CCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ..-|+||++.   +.....|+ |||. -|..|-...    ..||+||..+.
T Consensus       300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence            5579999986   56677888 9997 566675443    47999998764

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=91.54  E-value=0.11  Score=37.60  Aligned_cols=41  Identities=22%  Similarity=0.637  Sum_probs=23.2

Q ss_pred             ccccccccccccceEecCccccccchhHHHHHHhcCC--CCCcc
Q 041871          103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS--SCPLC  144 (415)
Q Consensus       103 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~--sCPlC  144 (415)
                      |.+|.+....+...... .|+=.+|..|+..++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            67788877666543222 4888999999999987655  69988

; PDB: 3NW0_A 2CT0_A.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.35  E-value=0.13  Score=52.39  Aligned_cols=57  Identities=21%  Similarity=0.446  Sum_probs=40.7

Q ss_pred             cCCCcccccccccccccce-EecCccccccchhHHHHHHh-cCCCCCcccccccCCCCCc
Q 041871           98 KQGLECAVCLSKFEDTEIL-RLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAEDPTI  155 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~-~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~~~~~  155 (415)
                      ++++-|+.|++.++..++- .-+| ||-..|..|...--+ -+..||-||.....++...
T Consensus        12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~   70 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRY   70 (480)
T ss_pred             cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccceeE
Confidence            4555699999999877654 3344 998888888655322 2457999999888776554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.98  E-value=0.14  Score=57.34  Aligned_cols=41  Identities=24%  Similarity=0.769  Sum_probs=32.3

Q ss_pred             CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871          101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK  147 (415)
Q Consensus       101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~  147 (415)
                      ..|..|--.++-|.-  .- .|||.||.+|+.   .....||-|+..
T Consensus       841 skCs~C~~~LdlP~V--hF-~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  841 SKCSACEGTLDLPFV--HF-LCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeecccCCcccccee--ee-ecccHHHHHhhc---cCcccCCccchh
Confidence            589999999887742  22 399999999998   355679999873

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.61  E-value=0.035  Score=57.27  Aligned_cols=50  Identities=18%  Similarity=0.547  Sum_probs=42.6

Q ss_pred             CCcccccccccccc-cceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871          100 GLECAVCLSKFEDT-EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus       100 ~~~C~ICle~~~~~-~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      ...|+||.+.++.. +.+..+- |||.+|..||.+||.....||.|+..+..
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            45899999999776 5665565 99999999999999998889999998864

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=89.49  E-value=0.14  Score=56.86  Aligned_cols=47  Identities=23%  Similarity=0.729  Sum_probs=35.7

Q ss_pred             CcccccccccccccceEecCccccccchhHHHHHHhc--CCCCCcccccccCCC
Q 041871          101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKVNAED  152 (415)
Q Consensus       101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~v~~~~  152 (415)
                      ..|.||++    .+....++ |+|.||..|+..-+..  ...||+||..+...+
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            79999999    34444555 9999999999886543  235999999886544

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.48  E-value=0.22  Score=46.69  Aligned_cols=30  Identities=30%  Similarity=0.933  Sum_probs=23.8

Q ss_pred             ccccccchhHHHHHHhc-----C------CCCCcccccccC
Q 041871          121 KCKHAFHISCIDQWLEK-----H------SSCPLCRLKVNA  150 (415)
Q Consensus       121 ~C~H~FH~~CI~~WL~~-----~------~sCPlCR~~v~~  150 (415)
                      .||.-||.-|+..||..     +      ..||.|-.++..
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            49999999999999963     1      139999877654

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=88.81  E-value=0.13  Score=60.05  Aligned_cols=47  Identities=26%  Similarity=0.656  Sum_probs=38.5

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV  148 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v  148 (415)
                      +...|.||++.+.....+.   .|||.+|..|+..|+..+..||.|+...
T Consensus      1152 ~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             cccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence            4558999999987543332   3999999999999999999999998543

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=88.73  E-value=0.4  Score=44.14  Aligned_cols=54  Identities=26%  Similarity=0.640  Sum_probs=35.5

Q ss_pred             CCCcccccccccccccceE---------ecCccccc-cchhHHHHHHhc-------------------------------
Q 041871           99 QGLECAVCLSKFEDTEILR---------LLPKCKHA-FHISCIDQWLEK-------------------------------  137 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~---------~lp~C~H~-FH~~CI~~WL~~-------------------------------  137 (415)
                      ++.+||||||.-.+..-+.         -.- |+-. -|..|++++-+.                               
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQP   79 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccc
Confidence            3569999999866554332         111 5533 478999997531                               


Q ss_pred             CCCCCcccccccCCCC
Q 041871          138 HSSCPLCRLKVNAEDP  153 (415)
Q Consensus       138 ~~sCPlCR~~v~~~~~  153 (415)
                      ...||+||..|..+..
T Consensus        80 ~L~CPLCRG~V~GWtv   95 (162)
T PF07800_consen   80 ELACPLCRGEVKGWTV   95 (162)
T ss_pred             cccCccccCceeceEE
Confidence            1249999999976644

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.88  E-value=0.33  Score=48.13  Aligned_cols=48  Identities=29%  Similarity=0.665  Sum_probs=37.1

Q ss_pred             CCcccccccccccccce---EecCccccccchhHHHHHHhcC-CCCCcccccc
Q 041871          100 GLECAVCLSKFEDTEIL---RLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKV  148 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~---~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v  148 (415)
                      .+.|-||-++|...+..   +.| +|||.||..|+.+-+... ..||.||...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            35899999999877422   445 499999999998876543 3599999985

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=87.86  E-value=0.53  Score=35.88  Aligned_cols=35  Identities=31%  Similarity=0.830  Sum_probs=30.5

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHH
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ  133 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~  133 (415)
                      ....|++|-+.|.+++.+.+.|.|+-.+|+.|...
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            45689999999998888889999999999999544

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.58  E-value=0.51  Score=48.36  Aligned_cols=65  Identities=25%  Similarity=0.521  Sum_probs=42.6

Q ss_pred             HHHHhhCCceeeecCcC-CcCCCcccccccccccccceEecCccccccchhHHHH--HHhcCCCCCcccccc
Q 041871           80 KAVIESLPFFRFSSLKG-SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQ--WLEKHSSCPLCRLKV  148 (415)
Q Consensus        80 ~~~i~~Lp~~~~~~~~~-~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~--WL~~~~sCPlCR~~v  148 (415)
                      +..+..-|...-++.++ ..+...|.||-+.+.-   ..++| |+|..|--|-.+  -|-..+.||+||..-
T Consensus        40 KNnlsaEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          40 KNNLSAEPNLTTSSADDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             ccccccCCccccccccccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            33444445544433333 3455689999887533   34677 999999889655  355678999999854

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=86.22  E-value=0.5  Score=48.82  Aligned_cols=32  Identities=28%  Similarity=0.878  Sum_probs=23.0

Q ss_pred             cccccchhHHHHHHhc-------------CCCCCcccccccCCCC
Q 041871          122 CKHAFHISCIDQWLEK-------------HSSCPLCRLKVNAEDP  153 (415)
Q Consensus       122 C~H~FH~~CI~~WL~~-------------~~sCPlCR~~v~~~~~  153 (415)
                      |.-..|.+|+-+|+..             +-.||.||+.+.-.|.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV  355 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV  355 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence            3445678999999842             3359999998876553

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.90  E-value=0.23  Score=54.26  Aligned_cols=46  Identities=24%  Similarity=0.520  Sum_probs=34.1

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLK  147 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~  147 (415)
                      +-..|+||+..|-...-.-+.+.|||..|..|+..-  .+.+|| |+.+
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D   55 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD   55 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence            345899999988766544333459999999999886  457899 6543

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=85.09  E-value=0.47  Score=47.37  Aligned_cols=46  Identities=22%  Similarity=0.578  Sum_probs=36.9

Q ss_pred             CCcccccccccccccce-EecCccccccchhHHHHHHhcCCCCCcccc
Q 041871          100 GLECAVCLSKFEDTEIL-RLLPKCKHAFHISCIDQWLEKHSSCPLCRL  146 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~-~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~  146 (415)
                      ...||||.+.+-..... ..++ |||.-|..|+......+-+||+|..
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence            34599999998666544 3455 9999999999998777788999987

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=84.47  E-value=0.36  Score=48.75  Aligned_cols=43  Identities=33%  Similarity=0.773  Sum_probs=29.1

Q ss_pred             cccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871          102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      .|--|--.+  ..-.+.+| |+|+||.+|-..  ...+.||.|-..|.
T Consensus        92 fCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   92 FCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             eecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence            455564332  23346788 999999999655  24678999976654

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=84.23  E-value=0.79  Score=45.91  Aligned_cols=54  Identities=19%  Similarity=0.605  Sum_probs=37.9

Q ss_pred             cccccccc-cccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCCCCc
Q 041871          102 ECAVCLSK-FEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDPTI  155 (415)
Q Consensus       102 ~C~ICle~-~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~~~~  155 (415)
                      .||+|... |-.++.......|+|..|..|++.-+..+ ..||.|-..+...+...
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~   57 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRV   57 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccch
Confidence            59999866 34444332333499999999999977654 46999987776655544

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=83.79  E-value=0.54  Score=46.01  Aligned_cols=54  Identities=24%  Similarity=0.617  Sum_probs=39.3

Q ss_pred             CCCcccccccc-ccccc-ceEecCccccccchhHHHHHHhcCC-CCC--cccccccCCC
Q 041871           99 QGLECAVCLSK-FEDTE-ILRLLPKCKHAFHISCIDQWLEKHS-SCP--LCRLKVNAED  152 (415)
Q Consensus        99 e~~~C~ICle~-~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~~-sCP--lCR~~v~~~~  152 (415)
                      .+..||||..+ |-.|+ ++.+-|.|-|..|..|+++-+...+ .||  -|-.-+....
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k   67 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK   67 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence            35589999876 33444 4555667999999999999887654 699  7977665433

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=83.71  E-value=0.48  Score=50.83  Aligned_cols=76  Identities=12%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             HHHHHhcCCCCCc-ccccccCCCCCccccCcchhhccCCCcccccCcccccccccccccCCCCC-----CCCccccccCC
Q 041871          131 IDQWLEKHSSCPL-CRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRF-----SIGSSFRKNKE  204 (415)
Q Consensus       131 I~~WL~~~~sCPl-CR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~~~g~~G~gRy-----~~Ghafrh~~~  204 (415)
                      ...|-..-.+||. |...........         +.+.....++-..+||+|..||..||||-     ..|||-.||  
T Consensus       145 ~~~w~~E~~tC~H~~n~~~~s~~~~n---------i~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY--  213 (749)
T COG5207         145 RVLWRDEEVTCVHGCNEGPSSIEMGN---------IGGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHY--  213 (749)
T ss_pred             hhhhhhhcccccccCCCCCCcccccc---------cCCceeccccchhceEEEEecCcccccceeecCCCCcchhhhh--
Confidence            3456656677865 433322211111         11233334677889999999999999984     358999999  


Q ss_pred             CChhhhHHHhhhhcC
Q 041871          205 PNKEEELLIQEEAVD  219 (415)
Q Consensus       205 ~~ke~~~l~~~e~~~  219 (415)
                        ++++|.++-.+.+
T Consensus       214 --~~t~Hplavkl~S  226 (749)
T COG5207         214 --EETQHPLAVKLPS  226 (749)
T ss_pred             --hccCCceEEEccc
Confidence              7777887766654

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.98  E-value=3.1  Score=43.36  Aligned_cols=50  Identities=20%  Similarity=0.436  Sum_probs=39.5

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCC---CCCcccccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS---SCPLCRLKV  148 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---sCPlCR~~v  148 (415)
                      .....|||=.+.-.+......+. |||+...+-+.+-.+.+.   .||.|=...
T Consensus       332 HSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             cceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            45679999888877777777787 999999999999766554   499994433

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.39  E-value=0.61  Score=44.71  Aligned_cols=39  Identities=31%  Similarity=0.752  Sum_probs=28.5

Q ss_pred             ccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871          103 CAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus       103 C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      |-.|-+.   +..+.++| |.|. +|..|=..    -..||+|+....
T Consensus       161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence            7777665   66688888 9987 77788543    256999987653

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=80.49  E-value=1.2  Score=45.15  Aligned_cols=47  Identities=26%  Similarity=0.540  Sum_probs=35.0

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ..+-.+||||.+.+..+..-  .+ =||.-|..|-.+   ....||.||.++.
T Consensus        45 ~~~lleCPvC~~~l~~Pi~Q--C~-nGHlaCssC~~~---~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQ--CD-NGHLACSSCRTK---VSNKCPTCRLPIG   91 (299)
T ss_pred             chhhccCchhhccCccccee--cC-CCcEehhhhhhh---hcccCCccccccc
Confidence            34567999999999888322  11 269999888654   4677999999886

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.44  E-value=0.77  Score=52.01  Aligned_cols=36  Identities=22%  Similarity=0.530  Sum_probs=27.7

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHH
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL  135 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL  135 (415)
                      ..+..|.+|.-.+... .-.+-| |||.||..||.+-.
T Consensus       815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence            3467999999887554 344666 99999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	415
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-15
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		7e-10
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		1e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		7e-08
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		1e-07
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		2e-06
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		8e-05
1chc_A	68	Structure Of The C3hc4 Domain By 1h-Nuclear Magneti		8e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 36/49 (73%)
Query: 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
           G+ECAVCL++ ED E  R LP+C H FH  C+D WL  HS+CPLCRL V
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152
           GLEC VC   +   E +R LP C H FH SCI  WLE+H SCP+CR  +  ++
Sbjct: 15  GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 86  LPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
           LP +RF+      +   C VC+  FE  ++LR+LP C H FH  C+D+WL+ + +CP+CR
Sbjct: 9   LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154
           +C +CLS  E+ E +R LP C H FH  C+DQWL  +  CP+CR+ + A+ P+
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
           CAVCL  F+  + L + P CKHAFH  C+ +WLE    CPLC + V
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 80  KAVIESLPFFRFSSLKGS-KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH 138
           K  I++LP    +   G+  Q + C +C S++   ++   LP C H FH  C+  WL+K 
Sbjct: 19  KESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKS 77
Query: 139 SSCPLCR 145
            +CP+CR
Sbjct: 78  GTCPVCR 84

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150
           EC +C+    D     +LP C H+F   CID+W ++H +CP+CRL++  
Sbjct: 17  ECCICMDGRADL----ILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTG 60

>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic Resonance Spectroscopy; A New Structural Class Of Zinc- Finger Length = 68

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155
           C +CL   ED     +   C HAF   CI +W+ ++ +CPLC++ V +   TI
Sbjct: 8   CPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTI 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-34
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	5e-31
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-29
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	3e-26
2ect_A	78	Ring finger protein 126; metal binding protein, st	1e-25
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	9e-23
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	3e-20
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-19
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	5e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-16
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	4e-14
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	7e-14
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-13
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-13
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-12
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-12
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	3e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	3e-11
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	4e-11
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-10
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	9e-06
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-09
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	4e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	5e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	7e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-07
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-07
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	6e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	2e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	6e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	6e-06
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	7e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	8e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	3e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	4e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	9e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	9e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	1e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	1e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	4e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	4e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	4e-04
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	5e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	6e-04
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	7e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  122 bits (307), Expect = 1e-34
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 80  KAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS 139
                 LP +RF+      +   C VC+  FE  ++LR+LP C H FH  C+D+WL+ + 
Sbjct: 3   SGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANR 61

Query: 140 SCPLCRLKV 148
           +CP+CR   
Sbjct: 62  TCPICRADS 70

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score =  111 bits (281), Expect = 5e-31
 Identities = 30/53 (56%), Positives = 36/53 (67%)

Query: 96  GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
               G+ECAVCL++ ED E  R LP+C H FH  C+D WL  HS+CPLCRL V
Sbjct: 1   AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  108 bits (272), Expect = 2e-29
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 79  DKAVIESLPFFRFS-SLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK 137
            K  I++LP    +       Q + C +C S++   ++   LP C H FH  C+  WL+K
Sbjct: 18  SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK 76

Query: 138 HSSCPLCRLKV 148
             +CP+CR   
Sbjct: 77  SGTCPVCRCMF 87

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 99.4 bits (248), Expect = 3e-26
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 96  GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154
                 +C +CLS  E+ E +R LP C H FH  C+DQWL  +  CP+CR+ + A+ P+
Sbjct: 10  EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 98.3 bits (245), Expect = 1e-25
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 95  KGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153
           +    GLEC VC   +   E +R LP C H FH SCI  WLE+H SCP+CR  +  ++ 
Sbjct: 10  EHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 90.2 bits (224), Expect = 9e-23
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 92  SSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
             +K       CAVCL  F+  + L + P CKHAFH  C+ +WLE    CPLC + V
Sbjct: 7   GKVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 83.2 bits (206), Expect = 3e-20
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 93  SLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152
            +K      EC +C+    D     +LP C H+F   CID+W ++H +CP+CRL++   +
Sbjct: 8   RVKQLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 81.2 bits (201), Expect = 1e-19
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
            C +CL     + ++  +  C H  H +C ++ L++   CPLC 
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 80.3 bits (198), Expect = 5e-19
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
           C  C ++ +  + + +  +C H+FH  C+  W+++++ CPLC+
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 71.7 bits (176), Expect = 3e-16
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA 150
            C +CL    +      LP C HAF   CI +W+ ++ +CPLC++ V +
Sbjct: 7   RCPICLEDPSNYS--MALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 66.1 bits (161), Expect = 4e-14
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 101 LECAVCLSKFEDTEILRLLP---KCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151
           + C +C+  + +      L    +C H F   C+   L+  ++CP CR K+N +
Sbjct: 16  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 65.2 bits (159), Expect = 7e-14
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 101 LECAVCLSKFEDTEILRLLP---KCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152
           + C +C+  + +      L    +C H F   C+   L+  ++CP CR K+N + 
Sbjct: 4   VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 64.5 bits (157), Expect = 1e-13
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 92  SSLKGSKQGLECAVCLSKFEDTEILRLLP---KCKHAFHISCIDQWLEKHSSCPLCRLKV 148
           ++       + C +C+  + +      L    +C H F   C+   L+  ++CP CR K+
Sbjct: 2   TTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61

Query: 149 NAED 152
           N + 
Sbjct: 62  NHKR 65

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 63.8 bits (155), Expect = 5e-13
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL-EKHSSCPLCRLKVNAED 152
             C +C+ K  D    RL P C      SCI +WL E+ + CP CR  +   +
Sbjct: 23  FRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153
           + C++C     D   +    +C H F  SCI +     + CP C + V+   P
Sbjct: 16  ILCSICKGYLIDATTI---TECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 14/43 (32%), Positives = 17/43 (39%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
           C    +     E       C HAFH  CI +WL+    CPL  
Sbjct: 54  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 59.5 bits (143), Expect = 3e-11
 Identities = 14/43 (32%), Positives = 17/43 (39%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCR 145
           C    +     E       C HAFH  CI +WL+    CPL  
Sbjct: 65  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 92  SSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151
            +   S    ECA+CL        L     CKH F   C+         C LCR ++  +
Sbjct: 7   GNTAPSLTVPECAICLQTCVHPVSL----PCKHVFCYLCVKGASWLGKRCALCRQEIPED 62

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN 149
             C +C   F++  +     KC+H F  SC  +       C +C     
Sbjct: 16  FRCFICRQAFQNPVVT----KCRHYFCESCALEHFRATPRCYICDQPTG 60

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT 154
           L C +C   F D   +    +C H+F  +CI ++LE    CP+C ++V+   P 
Sbjct: 16  LMCVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPL 66

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152
           L C +C   F       ++P+C H +   CI ++L   + CP C + V   D
Sbjct: 23  LRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 97  SKQGLECAVCLSKFEDTEILRLLP---KCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP 153
               + C +C+  + +      L    +C H F   C+   L+  ++CP CR K+N +  
Sbjct: 4   GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63

Query: 154 TIFAYSNSMRFMFNNSERRED 174
                 +         +   +
Sbjct: 64  HPIYIGSGTVSCPICMDGYSE 84

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 44.0 bits (103), Expect = 9e-06
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 99  QGLECAVCLSKFEDTEILRLLP---KCKHAFHISCIDQWLEKHSSCPLCR 145
             + C +C+  + +      L    +C H F   C+   L+  ++CP CR
Sbjct: 71  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCRLKVNAEDPT 154
            C +C S        +    C    H+ C+ ++ + +    CP C      E P 
Sbjct: 17  ICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 19/63 (30%)

Query: 102 ECAVCLSKFED--------------TEILRLLPKCKHAFHISCIDQWLEKHS-----SCP 142
           +C +C+ K                   ++  L KC HAFH+ C+       +      CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 143 LCR 145
            C+
Sbjct: 87  SCK 89

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 50.8 bits (121), Expect = 5e-08
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI 155
           L+C +C   F +   L     C H+F   CI++W+++   CP+CR  + ++  ++
Sbjct: 65  LQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSL 115

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--HSSCPLCRLKVNAEDP 153
           L C +C     D     ++P C +++   CI   L +    +CP C     + D 
Sbjct: 16  LLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 99  QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAEDP 153
               C +C    +D    ++ P C H    SC+  W E     CP CR ++   +P
Sbjct: 331 TFQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 92  SSLKGSKQGLECAVCLSKFEDTEIL-RLLPKCKHAFHISCIDQWLEKHS---SCPLCRLK 147
            +L   ++ LEC +C+  F + ++  +LL  C H     C+++ L        CP C   
Sbjct: 7   GNLDALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKI 65

Query: 148 VN 149
             
Sbjct: 66  TR 67

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 15/63 (23%)

Query: 102 ECAVCLSKFED----TEILRLLPKCKHAFHISCIDQWLEK-----------HSSCPLCRL 146
            C +C +   D      +     KC    H  C+++W +               CP C+ 
Sbjct: 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369

Query: 147 KVN 149
           K++
Sbjct: 370 KLS 372

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAED 152
            +C  C              +C H F  SC+   L   S  C  C+  +  + 
Sbjct: 16  YKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-CPLCRLKVNAED 152
           + C +C     D         CKH F   CI + L+   S CP CR      D
Sbjct: 24  ISCQICEHILADPVETS----CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-CPLCRLKVNAED 152
            EC +CL    +     +   C H F  +CI + +      CP+    +    
Sbjct: 19  YECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 5/46 (10%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCR 145
            +C  C               C+H     C+D+       SCP CR
Sbjct: 53  FQCICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACR 94

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCR 145
           L C +C     D     ++P C +++   CI   L +    +CP C 
Sbjct: 14  LLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCH 57

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWL-EKHSSCPLCRLKVNAEDPTIF 156
            +EC +C+   E  +I      C +     C  +   +++  CP CR     EDP ++
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY-PEDPAVY 67

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 92  SSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151
           ++L   ++ L C+ C +   +   L     C+H F  +C+   +   + CP+C      +
Sbjct: 14  AALDRLEKLLRCSRCTNILREPVCL---GGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68

Query: 152 D 152
           D
Sbjct: 69  D 69

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 92  SSLKGSKQGLECAVCLSKFEDTEILRLLPK---CKHAFHISCIDQWLEKHS-SCPLCRLK 147
                S    +C +C+    +       P    C H     C    +EK S  CP CR +
Sbjct: 7   KDAIPSLSECQCGICMEILVE-------PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRR 59

Query: 148 V 148
           V
Sbjct: 60  V 60

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 99  QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
           Q L C  C ++ +     +LLP C H     C++        CP+C+   
Sbjct: 5   QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEA---SGMQCPICQAPW 47

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-CPLCRLKVNAED 152
            EC +CL    +     +   C H F  +CI + +      CP+    +    
Sbjct: 19  YECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDP 153
           L C +CL   ++T       +C H F   CI   L      CP CR K+ ++  
Sbjct: 55  LMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 68  LIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFH 127
           LI     F+   +A++E   + R +     K    C +C S     +       C    H
Sbjct: 151 LIEKEGEFTLHGRAILEMEQYIRETYPDAVKI---CNICHSLLIQGQSC---ETCGIRMH 204

Query: 128 ISCIDQWLEKHSS--CPLCRLKVNAEDPTIF 156
           + C+ ++ + ++   CP C      E P +F
Sbjct: 205 LPCVAKYFQSNAEPRCPHCNDYWPHEIPKVF 235

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-CPLCRLKVNAEDPTIFAYS 159
             C+ C +            +C H +   C+   L      C  C  +   E+      S
Sbjct: 32  YLCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87

Query: 160 NSM 162
           +S 
Sbjct: 88  SSA 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 53/411 (12%), Positives = 114/411 (27%), Gaps = 112/411 (27%)

Query: 24  KPSLAVVI----GILCVM----FILTF--------ILLLYAKFCHRASSLFANTQIHNPA 67
           K  +A+ +     + C M    F L          +L +  K  ++    +  ++  + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSS 221

Query: 68  LIRSTSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFH 127
            I+            I S+       L  SK    C + L   ++ +          AF+
Sbjct: 222 NIKLR----------IHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAWN-------AFN 263

Query: 128 ISCIDQWLEKHSSCPLCRLKVNAEDPTIFAY-SNSMRFMFNNSERR----EDSNIELFIQ 182
           +S              C++ +      +  + S +     +          D    L ++
Sbjct: 264 LS--------------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 183 ---------REEEHRGSSRF--SIGSSFRKN-------KEPNKEEELLIQEEAVDG-DDD 223
                      E    + R    I  S R         K  N ++   I E +++  +  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 224 ERILHKHNHK---IIVSDV--------IFKNRWSSASSSDLMLLNSELINDMSSNRFSNP 272
           E   ++       +             +    W     SD+M++ ++L       +    
Sbjct: 370 E---YRKMFDRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 273 NDFG----QFSTKRAIENNEQILKIKEEMEMKRLFENKFSTISKTSPGVLVPNVPSSSGS 328
           +           K          K++ E  + R   + ++         L+P        
Sbjct: 424 STISIPSIYLELKV---------KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 329 NKIISSLNTSRTINPTTDRKSMSEITAVSRFQDLG-MKNRIRESSIDGNER 378
           + I   L   + I           +     F D   ++ +IR  S   N  
Sbjct: 475 SHIGHHL---KNIEHPERMTLFRMV-----FLDFRFLEQKIRHDSTAWNAS 517

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFH-ISCIDQWLEKHSSCPLCRLKV 148
            C++C  +  D  I+    +  H      C  +  +  +SCP+C+ ++
Sbjct: 9   PCSLCEKRPRDGNII--HGRTGHLVTCFHCARRLKKAGASCPICKKEI 54

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 96  GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE 136
           GS     C +CL ++   ++  +  +C+  F   C+ Q++E
Sbjct: 1   GSSGSSGCKLCLGEYPVEQMTTI-AQCQCIFCTLCLKQYVE 40

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 103 CAVCLSKFEDTEILRLLPKCK---HAFHISCIDQWLE--KHSSCPLCR 145
           C +C  + +D   L     C    H  H +C+ QW++      C LC+
Sbjct: 18  CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 65

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 5/46 (10%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCR 145
             C  C              +C H     C+ +  +    SCP CR
Sbjct: 79  FMCVCCQELVYQPVTT----ECFHNVCKDCLQRSFKAQVFSCPACR 120

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 101 LECAVCLS-KFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCR 145
             C  C + K+ +  +  ++  C H    SC+D    + + +CP C 
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK---HSSCPLCR 145
           + C +CL   +    +     C H F + CI Q  E       CPLC+
Sbjct: 21  VICPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLCK 64

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFH-ISCIDQWLEKHSSCPLCRLKV 148
            C +C  + ++  I+    K  H     +C  +  +++  CP+CR  +
Sbjct: 10  PCVICQGRPKNGCIVHG--KTGHLMACFTCAKKLKKRNKPCPVCRQPI 55

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 92  SSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH------SSCPLCR 145
           S L+  K+ + C +CL   ++         C H+F  +CI    E +       +CP+CR
Sbjct: 11  SVLEMIKEEVTCPICLELLKEPVSA----DCNHSFCRACITLNYESNRNTDGKGNCPVCR 66

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152
           CA+         +    PK +  F  S ++Q+++   + P+    ++ E+
Sbjct: 6   CAISGKVPRRPVLS---PKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH---SSCPLCR 145
           LEC +CL   ++        KC H F   C+ + L +    S CPLC+
Sbjct: 22  LECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCK 65

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 15/70 (21%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCID---------QWLEKHSSCPLCRLKVNAEDP 153
           C VC    ED ++L     C   +HI C+           W      CP C L    + P
Sbjct: 19  CQVCSRGDEDDKLL-FCDGCDDNYHIFCLLPPLPEIPRGIWR-----CPKCILAECKQPP 72

Query: 154 TIFAYSNSMR 163
             F +  + +
Sbjct: 73  EAFGFEQATQ 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.57
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.54
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.39
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.37
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.36
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.35
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.31
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.29
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.26
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.25
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.23
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.2
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.16
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.16
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.15
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.12
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.09
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.06
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.05
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.04
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.03
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.02
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.01
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.01
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.0
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.98
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.97
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.96
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.96
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.94
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.92
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.91
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.91
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.91
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.89
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.88
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.86
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.86
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.81
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.81
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.8
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.79
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.78
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.76
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.74
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.73
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.7
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.66
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.64
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.59
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.59
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.59
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.58
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.56
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.54
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.48
2g45_A	129	Ubiquitin carboxyl-terminal hydrolase 5; zinc fing	98.45
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.44
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.44
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.43
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.43
2i50_A	126	Ubiquitin carboxyl-terminal hydrolase 16; alpha/be	98.35
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.29
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.23
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.18
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.16
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.1
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.06
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	98.03
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.97
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	97.87
3nw0_A	238	Non-structural maintenance of chromosomes element	97.68
2ida_A	102	Hypothetical protein; zinc binding protein, struct	97.6
2uzg_A	97	Ubiquitin carboxyl-terminal hydrolase 33; UBL conj	97.43
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.37
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	92.73
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	91.57
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	89.86
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	89.85
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	82.04
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	81.18

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.57  E-value=2.6e-15  Score=122.56  Aligned_cols=79  Identities=29%  Similarity=0.663  Sum_probs=68.1

Q ss_pred             cccccCCCCHHHHhhCCceeeecCcC-CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           71 STSRFSGIDKAVIESLPFFRFSSLKG-SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        71 ~~~r~~gl~~~~i~~Lp~~~~~~~~~-~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ......|++++.++.||.+.+..... ..+...|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+.
T Consensus        10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            34456699999999999998876543 346778999999999988888898 9999999999999999999999999876


Q ss_pred             C
Q 041871          150 A  150 (415)
Q Consensus       150 ~  150 (415)
                      +
T Consensus        89 ~   89 (91)
T 2l0b_A           89 P   89 (91)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3.5e-15  Score=117.01  Aligned_cols=69  Identities=36%  Similarity=0.938  Sum_probs=61.0

Q ss_pred             HHhhCCceeeecCcCCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871           82 VIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE  151 (415)
Q Consensus        82 ~i~~Lp~~~~~~~~~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~  151 (415)
                      .++.||.+++.......+...|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||..+.+.
T Consensus         5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            356789998887776777889999999999998888898 999999999999999999999999988653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.39  E-value=2e-13  Score=100.32  Aligned_cols=52  Identities=58%  Similarity=1.266  Sum_probs=46.6

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      .+..+|+||++.|..++....++.|+|.||..||..|++.+.+||+||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            3567999999999998888888779999999999999999999999998763

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.37  E-value=4e-13  Score=105.64  Aligned_cols=58  Identities=45%  Similarity=0.980  Sum_probs=50.9

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCc
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI  155 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~  155 (415)
                      ..+...|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+...+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence            345779999999999988888888 9999999999999998899999999987765443

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=6.7e-13  Score=103.34  Aligned_cols=54  Identities=43%  Similarity=0.882  Sum_probs=48.4

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE  151 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~  151 (415)
                      ......|+||++.|..+..+..++ |+|.||..||..|++.+.+||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            345679999999999998888888 999999999999999999999999988653

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.35  E-value=7e-13  Score=101.89  Aligned_cols=55  Identities=42%  Similarity=0.972  Sum_probs=48.5

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED  152 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~  152 (415)
                      ......|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            345679999999998888888888 9999999999999999999999999887543

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.31  E-value=1.4e-12  Score=109.71  Aligned_cols=55  Identities=27%  Similarity=0.616  Sum_probs=43.3

Q ss_pred             CCCccccccccccccc---------------ceEecCccccccchhHHHHHHh-----cCCCCCcccccccCCCCC
Q 041871           99 QGLECAVCLSKFEDTE---------------ILRLLPKCKHAFHISCIDQWLE-----KHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        99 e~~~C~ICle~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~v~~~~~~  154 (415)
                      .+..|+||++.|..+.               .+.+++ |+|.||..||..|+.     .+.+||+||..+......
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~   98 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT   98 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence            3469999999997653               233566 999999999999994     467899999988765443

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.2e-12  Score=104.65  Aligned_cols=52  Identities=27%  Similarity=0.774  Sum_probs=42.6

Q ss_pred             CCCccccccccccc-----------ccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871           99 QGLECAVCLSKFED-----------TEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~-----------~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      ++.+|+||++.|..           ++.++.++.|+|.||..||.+||..+.+||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            45678888888854           34455666699999999999999999999999998754

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.26  E-value=2.6e-12  Score=98.81  Aligned_cols=55  Identities=24%  Similarity=0.696  Sum_probs=46.4

Q ss_pred             cCCCcccccccccccc----cceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871           98 KQGLECAVCLSKFEDT----EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP  153 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~  153 (415)
                      .+...|+||++.|..+    .....++ |||.||..||..|+..+.+||+||..+...+.
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            4567999999999775    3445666 99999999999999999999999999876554

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.25  E-value=3.9e-12  Score=93.20  Aligned_cols=51  Identities=27%  Similarity=0.755  Sum_probs=43.0

Q ss_pred             cCCCccccccccccccc-ceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           98 KQGLECAVCLSKFEDTE-ILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      .....|+||++.|..+. ....++ |+|.||..||..|+....+||+||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            34679999999996644 455666 9999999999999999999999998764

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=4.4e-12  Score=96.64  Aligned_cols=53  Identities=25%  Similarity=0.725  Sum_probs=44.3

Q ss_pred             CcCCCccccccccccccc----ceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871           97 SKQGLECAVCLSKFEDTE----ILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~----~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      ..+...|+||++.|..+.    .+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            456779999999997652    335666 99999999999999999999999998753

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.20  E-value=5.7e-12  Score=94.64  Aligned_cols=53  Identities=25%  Similarity=0.731  Sum_probs=44.7

Q ss_pred             CCCcccccccccccc----cceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871           99 QGLECAVCLSKFEDT----EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED  152 (415)
Q Consensus        99 e~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~  152 (415)
                      +..+|+||++.+..+    ..+..++ |||.||..||..|+..+.+||+||..+...+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            456999999999765    3345666 9999999999999999999999999987654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.6e-11  Score=94.16  Aligned_cols=56  Identities=25%  Similarity=0.564  Sum_probs=46.0

Q ss_pred             CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871           96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~  154 (415)
                      ...+...|+||++.+.++  +.+++ |+|.||..||..|+..+..||+||..+...+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred             hcCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence            345677999999999875  22235 999999999999999889999999998776554

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.16  E-value=1.7e-11  Score=103.58  Aligned_cols=50  Identities=32%  Similarity=0.679  Sum_probs=42.2

Q ss_pred             CCCccccccccccccc---------------ceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           99 QGLECAVCLSKFEDTE---------------ILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        99 e~~~C~ICle~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ++.+|+||++.|..+-               .++.++ |+|.||..||..||..+.+||+||..+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            5679999999998651               245566 9999999999999999999999999853

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.1e-11  Score=95.51  Aligned_cols=53  Identities=36%  Similarity=0.982  Sum_probs=45.0

Q ss_pred             CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871           96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP  153 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~  153 (415)
                      ...+...|+||++.+..    ..++ |+|.||..||..|+..+..||+||..+...+.
T Consensus        11 ~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             cCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            34557799999999876    5677 99999999999999988999999999876543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=6.4e-11  Score=94.48  Aligned_cols=56  Identities=25%  Similarity=0.720  Sum_probs=46.2

Q ss_pred             CCcCCCcccccccccccccc-eEecCccccccchhHHHHHHhcC---CCCCcccccccCCC
Q 041871           96 GSKQGLECAVCLSKFEDTEI-LRLLPKCKHAFHISCIDQWLEKH---SSCPLCRLKVNAED  152 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~-~~~lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v~~~~  152 (415)
                      ...+..+|+||++.|...+. .+.++ |||.||..||..|+..+   ..||+||..+...+
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            34567799999999988654 45676 99999999999999875   68999999886654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.11  E-value=4e-11  Score=91.59  Aligned_cols=49  Identities=35%  Similarity=0.922  Sum_probs=42.2

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      ....|+||++.+..+  ...++ |||.||..|+..|+..+.+||+||..+..
T Consensus         4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            456999999998754  35677 99999999999999999999999998753

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=3.8e-11  Score=92.97  Aligned_cols=50  Identities=32%  Similarity=0.632  Sum_probs=43.0

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE  151 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~  151 (415)
                      .+...|+||++.+..+   ..++ |+|.||..||..|+..+..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            4567999999998766   4566 999999999999999889999999988643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=8.6e-11  Score=94.40  Aligned_cols=54  Identities=28%  Similarity=0.730  Sum_probs=44.7

Q ss_pred             CcCCCcccccccccccccceEecCccc-----cccchhHHHHHHhcC--CCCCcccccccCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCK-----HAFHISCIDQWLEKH--SSCPLCRLKVNAED  152 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~~--~sCPlCR~~v~~~~  152 (415)
                      ..+...|.||++++..++.+ ++| |+     |.||..||++||..+  .+||+||+.+....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            34567999999999877766 577 86     999999999999865  48999999987543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.06  E-value=1.4e-10  Score=90.73  Aligned_cols=53  Identities=23%  Similarity=0.538  Sum_probs=42.8

Q ss_pred             CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcC--CCCCcccccccCC
Q 041871           96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCRLKVNAE  151 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~v~~~  151 (415)
                      ...+...|+||++.|..+.   .++.|||.||..||..|+..+  ..||+||..+...
T Consensus        11 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP   65 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred             cCCCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence            3456779999999998763   355599999999999999865  6899999975543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.3e-10  Score=89.81  Aligned_cols=52  Identities=29%  Similarity=0.691  Sum_probs=42.6

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHh---cCCCCCcccccccCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE---KHSSCPLCRLKVNAED  152 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~sCPlCR~~v~~~~  152 (415)
                      ..+...|+||++.+..+   ..++ |||.||..||..|+.   ....||+||..+...+
T Consensus        17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            45677999999999865   3456 999999999999996   3558999999887654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=88.68  Aligned_cols=52  Identities=19%  Similarity=0.493  Sum_probs=42.9

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAED  152 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~~  152 (415)
                      ..+...|+||++.+..+..   ++ |||.||..||..|+. ....||+||..+..++
T Consensus        12 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CCCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             CCcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            3456799999999987743   55 999999999999994 5678999999887653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.3e-10  Score=92.03  Aligned_cols=49  Identities=20%  Similarity=0.571  Sum_probs=42.4

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ......|+||++.|..+   .+++ |||.||..||..|+.....||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34567999999999775   3466 9999999999999998899999999885

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.03  E-value=1.7e-10  Score=90.43  Aligned_cols=53  Identities=19%  Similarity=0.481  Sum_probs=44.4

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP  153 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~  153 (415)
                      ..+...|+||++.|.++.   .++ |||.||..||..|+.. +.+||+||..+...+.
T Consensus         5 ~~~~~~C~IC~~~~~~Pv---~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l   58 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDPV---IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL   58 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEE---EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred             CcccCCCCCccccccCCE---EcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence            345779999999998773   456 9999999999999987 7789999999876544

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.02  E-value=2.1e-10  Score=90.37  Aligned_cols=53  Identities=26%  Similarity=0.663  Sum_probs=44.4

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhc------CCCCCcccccccCCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK------HSSCPLCRLKVNAEDP  153 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~v~~~~~  153 (415)
                      ..+...|+||++.|..+.   .++ |+|.||..||..|+..      ...||+||..+...+.
T Consensus        16 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~   74 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL   74 (85)
T ss_dssp             CCTTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred             CccCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence            456779999999998773   566 9999999999999987      6689999999876543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.01  E-value=1e-10  Score=102.12  Aligned_cols=48  Identities=31%  Similarity=0.939  Sum_probs=41.8

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      +...|+||++.|..+   ..+| |||.||..||..|+..+.+||+||..+..
T Consensus        52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            346899999999776   3567 99999999999999999999999998854

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=2.9e-10  Score=89.63  Aligned_cols=53  Identities=32%  Similarity=0.742  Sum_probs=44.3

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhc------CCCCCcccccccCCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK------HSSCPLCRLKVNAEDP  153 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~v~~~~~  153 (415)
                      ..+...|+||++.+..+.   .++ |+|.||..||..|+..      ...||+||..+...+.
T Consensus        16 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~   74 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQPL---SLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI   74 (85)
T ss_dssp             CCCCCCCTTTCSCCSSCB---CCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred             ccCCCCCCCCCcccCCce---eCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence            456779999999998763   456 9999999999999987      7789999999876544

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.00  E-value=4.2e-11  Score=102.99  Aligned_cols=51  Identities=31%  Similarity=0.634  Sum_probs=1.0

Q ss_pred             CCCccccccccccccc-------------c-eEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           99 QGLECAVCLSKFEDTE-------------I-LRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        99 e~~~C~ICle~~~~~~-------------~-~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      +...|+||++.|..+.             . .+.++.|+|.||..||..||..+.+||+||.++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            4579999999997532             1 2222349999999999999999999999999864

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.98  E-value=2.6e-10  Score=86.66  Aligned_cols=55  Identities=20%  Similarity=0.537  Sum_probs=43.4

Q ss_pred             CCCccccccc-ccccccceE-ecCccccccchhHHHHHHhc-CCCCCcccccccCCCCC
Q 041871           99 QGLECAVCLS-KFEDTEILR-LLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        99 e~~~C~ICle-~~~~~~~~~-~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~~  154 (415)
                      +...|+||++ .+..+.... .++ |||.||..||..|+.. ...||+||..+...+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~   59 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR   59 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred             CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence            3568999999 787776543 455 9999999999999765 45799999998765543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.97  E-value=1e-10  Score=91.55  Aligned_cols=53  Identities=26%  Similarity=0.647  Sum_probs=43.6

Q ss_pred             CCcCCCcccccccccccccceEecCccccccchhHHHHHHhc-------CCCCCcccccccCCC
Q 041871           96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-------HSSCPLCRLKVNAED  152 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-------~~sCPlCR~~v~~~~  152 (415)
                      ...+...|+||++.|..+.   .++ |||.||..||..|+..       ...||+||..+...+
T Consensus         8 ~~~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPL---SLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCCCEETTTTEECSSCC---CCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             hcccCCCCcCCCcccCCee---ECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            3456789999999998764   356 9999999999999976       567999999987643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.96  E-value=2.4e-10  Score=97.18  Aligned_cols=55  Identities=24%  Similarity=0.696  Sum_probs=46.0

Q ss_pred             cCCCcccccccccccc----cceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871           98 KQGLECAVCLSKFEDT----EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP  153 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~  153 (415)
                      .+..+|+||++.|..+    .....++ |||.||..||..|++.+.+||+||..+...+.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l   63 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   63 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred             CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence            3467999999999876    3345666 99999999999999999999999999876544

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.96  E-value=2.3e-10  Score=94.65  Aligned_cols=53  Identities=26%  Similarity=0.728  Sum_probs=43.4

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDP  153 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~~  153 (415)
                      .+...|+||++.|..+.  ..++ |||.||..||..|+... ..||+||..+...+.
T Consensus        20 ~~~~~C~IC~~~~~~p~--~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l   73 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDAR--LCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL   73 (100)
T ss_dssp             HHHTBCTTTCSBCSSEE--ECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCccCCccccCcc--ccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence            35679999999998652  2255 99999999999999887 689999999865544

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=7.4e-10  Score=83.47  Aligned_cols=45  Identities=31%  Similarity=0.750  Sum_probs=37.4

Q ss_pred             CCcCCCcccccccccccccceEecCccccccchhHHHHHHh---cCCCCCcc
Q 041871           96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE---KHSSCPLC  144 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~sCPlC  144 (415)
                      ...+...|+||++.+..+   ..++ |||.||..||..|+.   ....||+|
T Consensus        16 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            345678999999999876   3456 999999999999998   45579998

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.92  E-value=3.4e-10  Score=92.93  Aligned_cols=51  Identities=27%  Similarity=0.701  Sum_probs=42.5

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED  152 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~  152 (415)
                      +...|+||++.|..+.  .+++ |||.||..||..|+..+..||+||..+...+
T Consensus        21 ~~~~C~IC~~~~~~p~--~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   71 (99)
T 2y43_A           21 DLLRCGICFEYFNIAM--IIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD   71 (99)
T ss_dssp             HHTBCTTTCSBCSSEE--ECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred             CCCCcccCChhhCCcC--EECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence            4569999999998752  2235 9999999999999998889999999887543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=9e-10  Score=87.41  Aligned_cols=53  Identities=21%  Similarity=0.527  Sum_probs=43.3

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcC--CCCCcccccccCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCRLKVNAEDP  153 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~v~~~~~  153 (415)
                      ....+|+||.+.+..++...   .|+|.||..||.+||+.+  .+||+||........
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~   67 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP   67 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred             CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence            45679999999998765432   599999999999999877  789999988765443

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.91  E-value=8.7e-10  Score=89.06  Aligned_cols=51  Identities=24%  Similarity=0.555  Sum_probs=41.6

Q ss_pred             CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcC--CCCCccccccc
Q 041871           96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPLCRLKVN  149 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~v~  149 (415)
                      ...+...|+||++.|.++.   .++.|||.||..||..|+...  ..||+||..+.
T Consensus         9 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            3456789999999998773   454599999999999999753  58999999873

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.91  E-value=8.2e-10  Score=94.34  Aligned_cols=48  Identities=23%  Similarity=0.597  Sum_probs=40.9

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCC-CCCcccccccC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v~~  150 (415)
                      +...|+||++.|..+   ..++ |||.||..||..|+..+. .||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            456899999999876   3456 999999999999998544 89999999875

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.89  E-value=7.6e-10  Score=92.37  Aligned_cols=51  Identities=31%  Similarity=0.779  Sum_probs=43.1

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE  151 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~  151 (415)
                      .+...|+||++.|..+  +.+++ |||.||..||..|+..+..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            4567999999999775  32336 999999999999999889999999988754

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=9.8e-10  Score=80.96  Aligned_cols=44  Identities=32%  Similarity=0.930  Sum_probs=36.5

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHh---cCCCCCcc
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE---KHSSCPLC  144 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~sCPlC  144 (415)
                      ..+...|+||++.+..+.   .++ |+|.||..||..|+.   ....||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEPV---IIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSCC---CCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCccE---eCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            446779999999998873   456 999999999999954   46789998

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.86  E-value=1.5e-09  Score=90.44  Aligned_cols=52  Identities=27%  Similarity=0.673  Sum_probs=42.7

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCC---CCCcccccccCCCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS---SCPLCRLKVNAEDPT  154 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---sCPlCR~~v~~~~~~  154 (415)
                      +...|+||++.+..+.   .++ |||.||..||..|+..+.   .||+||..+...+..
T Consensus        20 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~   74 (112)
T 1jm7_A           20 KILECPICLELIKEPV---STK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ   74 (112)
T ss_dssp             HHTSCSSSCCCCSSCC---BCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred             CCCCCcccChhhcCeE---ECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence            3568999999998763   356 999999999999998654   799999988765443

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.86  E-value=9e-10  Score=93.57  Aligned_cols=54  Identities=24%  Similarity=0.728  Sum_probs=44.8

Q ss_pred             cCCCcccccccccccc----cceEecCccccccchhHHHHHHhcCCCCCcccccccCCC
Q 041871           98 KQGLECAVCLSKFEDT----EILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED  152 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~  152 (415)
                      .+...|+||++.|..+    .....++ |||.||..||..|+..+.+||+||..+...+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            4567899999999764    2234565 9999999999999999999999999987654

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.81  E-value=1.6e-09  Score=91.94  Aligned_cols=52  Identities=23%  Similarity=0.538  Sum_probs=43.4

Q ss_pred             CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcCC-CCCcccccccCC
Q 041871           96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAE  151 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v~~~  151 (415)
                      ...+...|+||++.+..+   ..++ |||.||..||..|+.... .||+||..+...
T Consensus        14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            345667999999999877   3466 999999999999998765 899999988654

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.81  E-value=2e-09  Score=96.26  Aligned_cols=50  Identities=32%  Similarity=0.721  Sum_probs=41.4

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA  150 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~  150 (415)
                      .+...|+||++.|..+  +.+++ |||.||..||..|+.. +..||+||..+..
T Consensus        52 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           52 HSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            3456999999999875  33346 9999999999999987 7789999998854

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.80  E-value=3.1e-09  Score=94.54  Aligned_cols=49  Identities=22%  Similarity=0.554  Sum_probs=41.9

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCC-CCCcccccccCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAE  151 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v~~~  151 (415)
                      +...|+||++.|..+.   .++ |||.||..||..|+.... .||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~pv---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPV---TTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSEE---ECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCCE---EcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            4568999999998773   466 999999999999998754 799999998765

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.79  E-value=3e-09  Score=85.85  Aligned_cols=52  Identities=15%  Similarity=0.108  Sum_probs=44.8

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP  153 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~  153 (415)
                      .+...|+||++.|.++.   +++ |||.|+..||..|+..+.+||+|+..+...+.
T Consensus        12 p~~~~CpI~~~~m~dPV---~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l   63 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPV---RLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESML   63 (85)
T ss_dssp             CTTTBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred             chheECcccCchhcCCe---ECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhc
Confidence            45789999999999883   566 99999999999999988999999998865543

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.78  E-value=3.6e-09  Score=88.14  Aligned_cols=53  Identities=15%  Similarity=0.109  Sum_probs=45.6

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~  154 (415)
                      .+...|+||++.|.++.   +++ |||.|+..||..|+..+.+||+|+..+...+..
T Consensus        27 p~~~~CpI~~~~m~dPV---~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~   79 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPV---RLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE   79 (100)
T ss_dssp             STTTBCTTTCSBCSSEE---EET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred             cHhhCCcCccCcccCCe---ECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence            45779999999999984   456 999999999999999888999999998765443

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.76  E-value=5.4e-09  Score=86.76  Aligned_cols=53  Identities=15%  Similarity=0.149  Sum_probs=45.5

Q ss_pred             cCCCcccccccccccccceEecCccc-cccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCK-HAFHISCIDQWLEKHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~-H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~  154 (415)
                      .+...|+||++.|.++.   +++ || |.|+..||..||..+.+||+|+..+...+..
T Consensus        20 p~~~~CpI~~~~m~dPV---~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~   73 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPV---VLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR   73 (98)
T ss_dssp             CTTTBCTTTCSBCSSEE---ECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred             cHhcCCcCccccccCCe---ECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhce
Confidence            45779999999999984   456 99 9999999999999888999999998765443

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.74  E-value=1.2e-09  Score=92.10  Aligned_cols=49  Identities=29%  Similarity=0.774  Sum_probs=41.0

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNA  150 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~  150 (415)
                      .+...|+||++.|..+   +.++ |||.||..||..|+.. ...||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            4467999999999876   3456 9999999999999976 5689999998753

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.73  E-value=4.9e-09  Score=88.39  Aligned_cols=51  Identities=31%  Similarity=0.617  Sum_probs=42.7

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP  153 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~  153 (415)
                      +...|+||++.+.++.   .++ |||.||..||..|+.. ...||+||..+...+.
T Consensus        22 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   73 (116)
T 1rmd_A           22 KSISCQICEHILADPV---ETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (116)
T ss_dssp             HHTBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCCCcHhcCcE---EcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence            3568999999998763   356 9999999999999987 6789999999876543

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.70  E-value=1.1e-08  Score=81.56  Aligned_cols=56  Identities=20%  Similarity=0.440  Sum_probs=42.2

Q ss_pred             CcCCCcccccccccccccce-EecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871           97 SKQGLECAVCLSKFEDTEIL-RLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP  153 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~-~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~  153 (415)
                      ..+..+|+||++.+...+.. ..++ |||.||..|+..++.. ...||+||..+.....
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            45677999999998654332 2234 9999999999998743 5679999999876543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.66  E-value=5.1e-09  Score=88.72  Aligned_cols=51  Identities=24%  Similarity=0.632  Sum_probs=41.8

Q ss_pred             cCCCcccccccccccccceEec-CccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLL-PKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~l-p~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~  154 (415)
                      .+...|+||++.|..+.   .+ + |||.||..||..|+.  ..||+||..+...+..
T Consensus        20 ~~~~~C~IC~~~~~~pv---~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~   71 (117)
T 1jm7_B           20 EKLLRCSRCTNILREPV---CLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK   71 (117)
T ss_dssp             HHTTSCSSSCSCCSSCB---CCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred             hhCCCCCCCChHhhCcc---EeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence            35679999999998773   44 5 999999999999987  7899999998654443

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.64  E-value=8.2e-09  Score=90.92  Aligned_cols=52  Identities=17%  Similarity=0.393  Sum_probs=42.9

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcCC-CCCcccccccCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS-SCPLCRLKVNAED  152 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v~~~~  152 (415)
                      ..+...|+||++.+..+   ..++ |||.||..||..|+.... .||+||..+...+
T Consensus        28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   80 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYEE   80 (141)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCCT
T ss_pred             CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccccc
Confidence            35677999999999888   3456 999999999999998665 8999999875443

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.59  E-value=2.4e-08  Score=76.26  Aligned_cols=49  Identities=16%  Similarity=0.446  Sum_probs=39.5

Q ss_pred             CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ++..|+||++.+.+.. +..+| |||. ||..|+..|+..+..||+||..+.
T Consensus         7 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            4568999999876542 11237 9999 899999999988889999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.59  E-value=1.8e-08  Score=95.73  Aligned_cols=52  Identities=13%  Similarity=0.200  Sum_probs=43.0

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDP  153 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~~  153 (415)
                      .....|+||++.|.+|.   +++ |||.||..||..|+..+ .+||+|+.++...+.
T Consensus       206 ~~~~~c~i~~~~~~dPv---~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l  258 (281)
T 2c2l_A          206 PDYLCGKISFELMREPC---ITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL  258 (281)
T ss_dssp             CSTTBCTTTCSBCSSEE---ECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred             CcccCCcCcCCHhcCCe---ECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence            35679999999999883   466 99999999999999864 459999998865443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.59  E-value=1.4e-08  Score=75.37  Aligned_cols=47  Identities=28%  Similarity=0.628  Sum_probs=38.9

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE  151 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~  151 (415)
                      .+...|+||++.|..+   +.++ |||.||..||..|   ...||+||..+...
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            4567899999999876   4567 9999999999884   56899999987643

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.58  E-value=2.4e-08  Score=101.61  Aligned_cols=48  Identities=29%  Similarity=0.813  Sum_probs=40.9

Q ss_pred             CCcccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccCC
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAE  151 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~~  151 (415)
                      ...|+||++.+..+   ..+| |||.||..|+..|+. ....||+||..+...
T Consensus       332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            46999999998654   4567 999999999999998 678899999988653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.1e-08  Score=82.21  Aligned_cols=53  Identities=19%  Similarity=0.508  Sum_probs=41.6

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcC------CCCCc--cccc-ccCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH------SSCPL--CRLK-VNAED  152 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~------~sCPl--CR~~-v~~~~  152 (415)
                      ..+...||||++.|.++.   +++.|||.|+..||..||..+      .+||+  |+.. +...+
T Consensus         4 ~~~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~   65 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD   65 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred             CCcEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence            345679999999999873   343499999999999999764      48999  9866 54443

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.54  E-value=3.8e-08  Score=74.96  Aligned_cols=49  Identities=18%  Similarity=0.429  Sum_probs=39.5

Q ss_pred             CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ....|+||++...+.. +..+| |||. ||..|+..|...+..||+||..+.
T Consensus         6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            4568999999865542 22347 9998 999999999888889999999874

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.48  E-value=5.4e-08  Score=87.23  Aligned_cols=53  Identities=23%  Similarity=0.530  Sum_probs=43.7

Q ss_pred             CCcCCCcccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCC
Q 041871           96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAED  152 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~  152 (415)
                      ...+...|+||++.|..+   +.++ |||.||..||..|+... ..||+||..+...+
T Consensus        14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   67 (170)
T 3hcs_A           14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ   67 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence            445678999999999887   3466 99999999999999764 48999999886543

>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A

Probab=98.45  E-value=2.6e-08  Score=86.95  Aligned_cols=94  Identities=6%  Similarity=-0.043  Sum_probs=60.6

Q ss_pred             hHHHHHHhcCCCCCcccccccCCCCCccccCcchhhccCCCcccccCcccccccccccccCCCCCC------CCcccccc
Q 041871          129 SCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRFS------IGSSFRKN  202 (415)
Q Consensus       129 ~CI~~WL~~~~sCPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~~~g~~G~gRy~------~Ghafrh~  202 (415)
                      .|+..|  ....||.|+.......... .....   ........++...++|+|+.||++|||||+      .+||.+||
T Consensus         2 ~~~~~W--~~e~~~~C~h~~~l~q~~~-~~~~~---~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~   75 (129)
T 2g45_A            2 QEVQAW--DGEVRQVSKHAFSLKQLDN-PARIP---PCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHY   75 (129)
T ss_dssp             -----------CCEECTTTTTCCCCSS-CCCCC---CCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHH
T ss_pred             hHHHhh--cCCCCCCCCCcCccccccc-ccccC---CCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHh
Confidence            688999  5567888877543221110 00000   001122345566799999999999999997      89999999


Q ss_pred             CCCChhhhHHHhhhhcC-----CCchhhhhccccc
Q 041871          203 KEPNKEEELLIQEEAVD-----GDDDERILHKHNH  232 (415)
Q Consensus       203 ~~~~ke~~~l~~~e~~~-----~~~~~~~~~~~~H  232 (415)
                          ++++|.+...+++     ..+|.|..|.||+
T Consensus        76 ----~~t~H~l~v~l~t~~~~~~~vwcY~cd~~V~  106 (129)
T 2g45_A           76 ----RETGYPLAVKLGTITPDGADVYSYDEDDMVL  106 (129)
T ss_dssp             ----HHHCCCEEEETTCCBTTBCCEEETTTTEEEE
T ss_pred             ----hhcCCCEEEECCCCCCCCCeEEECCCCCEeE
Confidence                8999999998887     6999999999874

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.44  E-value=4.6e-08  Score=97.80  Aligned_cols=53  Identities=25%  Similarity=0.689  Sum_probs=40.2

Q ss_pred             cCCCcccccccccccccce----EecCccccccchhHHHHHHhcC-----------CCCCcccccccC
Q 041871           98 KQGLECAVCLSKFEDTEIL----RLLPKCKHAFHISCIDQWLEKH-----------SSCPLCRLKVNA  150 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~----~~lp~C~H~FH~~CI~~WL~~~-----------~sCPlCR~~v~~  150 (415)
                      .+..+|+||++.+.+...+    -..++|+|.||..||.+||+..           .+||.||.++..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            4567999999999873322    1223699999999999999752           359999998753

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.44  E-value=3.5e-08  Score=77.25  Aligned_cols=44  Identities=20%  Similarity=0.616  Sum_probs=37.0

Q ss_pred             CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      +...|+||++.+.++   ..+| |||. ||..|+..|    ..||+||..+..
T Consensus        23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            456999999997664   4567 9999 999999998    789999998753

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.43  E-value=9e-08  Score=77.92  Aligned_cols=49  Identities=24%  Similarity=0.652  Sum_probs=40.4

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhc--------CCCCCc--cccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK--------HSSCPL--CRLK  147 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~sCPl--CR~~  147 (415)
                      .+..+|+||++.+..++.+.+.+ |+|.||..|+..++..        ...||.  |+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35679999999998887766666 9999999999998753        236999  9987

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.43  E-value=8.6e-08  Score=88.00  Aligned_cols=54  Identities=11%  Similarity=0.164  Sum_probs=44.1

Q ss_pred             CcCCCcccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCCCC
Q 041871           97 SKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDPT  154 (415)
Q Consensus        97 ~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~~~  154 (415)
                      ..+...||||++.|.+|.   +++ |||.|+..||..|+..+ .+||+|+.++...+..
T Consensus       103 ip~~f~CPI~~elm~DPV---~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~  157 (179)
T 2f42_A          103 IPDYLCGKISFELMREPC---ITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI  157 (179)
T ss_dssp             CCGGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred             CcHhhcccCccccCCCCe---ECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc
Confidence            346789999999999883   456 99999999999999863 5799999988665443

>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}

Probab=98.35  E-value=3.4e-08  Score=85.89  Aligned_cols=93  Identities=12%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             ccccccchhHHHHHHhc-----CCCCCcccccccCCCCCccccCcchhhccCCCcccccCcccccccccccccCCCCCC-
Q 041871          121 KCKHAFHISCIDQWLEK-----HSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRFS-  194 (415)
Q Consensus       121 ~C~H~FH~~CI~~WL~~-----~~sCPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~~~g~~G~gRy~-  194 (415)
                      .|.|+++..++..|-..     ...|+.|+..-...+.               +........++|+|+.||++|||||+ 
T Consensus         6 ~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~---------------~~~~~~~~~~Lw~CL~CG~vgCgr~~~   70 (126)
T 2i50_A            6 VCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK---------------AEEETEEKPSVWLCLKCGHQGCGRNSQ   70 (126)
T ss_dssp             CCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCS---------------SCTTTCCCCCEEEETTTCCEEECTTSS
T ss_pred             CCcChhhccccccccccccCCCCCcCcccccccccccc---------------ccccccccccceeeeeCCccccCCCCc
Confidence            49999999898887432     2469999765211110               11133456789999999999999995 


Q ss_pred             CCccccccCCCChh---hhHHHhhhhcCCCchhhhhccccc
Q 041871          195 IGSSFRKNKEPNKE---EELLIQEEAVDGDDDERILHKHNH  232 (415)
Q Consensus       195 ~Ghafrh~~~~~ke---~~~l~~~e~~~~~~~~~~~~~~~H  232 (415)
                      .+||.+||    ++   ++|.+...+++..+|.|..|.|++
T Consensus        71 ~~Ha~~H~----~~~~~t~H~l~~~l~t~~vwCY~cd~~V~  107 (126)
T 2i50_A           71 EQHALKHY----LTPRSEPHCLVLSLDNWSVWCYVCDNEVQ  107 (126)
T ss_dssp             SCHHHHHH----HSCCSSCCCEEEETTTCCEEETTTTEEEC
T ss_pred             chHHHHHH----hCcCCCCCcEEEECCCCeEEeCCCCcEEE
Confidence            69999999    66   789999999999999999999987

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.29  E-value=4.9e-07  Score=68.58  Aligned_cols=49  Identities=22%  Similarity=0.609  Sum_probs=37.0

Q ss_pred             cCCCcccccccccccccceEecC-cccc---ccchhHHHHHHhc--CCCCCccccccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLP-KCKH---AFHISCIDQWLEK--HSSCPLCRLKVN  149 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp-~C~H---~FH~~CI~~WL~~--~~sCPlCR~~v~  149 (415)
                      .+...|.||++...  +.+ ++| .|.|   .||..||.+|+..  +.+||+|++.+.
T Consensus         4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            35679999999843  333 567 2434   8999999999974  578999998764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=4.3e-07  Score=70.99  Aligned_cols=44  Identities=20%  Similarity=0.621  Sum_probs=35.8

Q ss_pred             CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      +...|+||++.+..+   ..+| |||. ||..|+..    ...||+||..+..
T Consensus        24 ~~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            356899999998665   3567 9999 99999965    3789999998854

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.18  E-value=4.8e-07  Score=87.53  Aligned_cols=54  Identities=30%  Similarity=0.557  Sum_probs=43.0

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcC--CCCCc--ccccccCCCCC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--SSCPL--CRLKVNAEDPT  154 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~sCPl--CR~~v~~~~~~  154 (415)
                      .....||||++.|.+|..  .+ .|||.||..||..|+..+  ..||+  |+..+...+..
T Consensus       179 ~~el~CPIcl~~f~DPVt--s~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~  236 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLI--SR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV  236 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEE--ES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred             ceeeECcCccCcccCCee--eC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence            456789999999988843  23 499999999999999764  46999  99988665543

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=1.7e-06  Score=66.92  Aligned_cols=45  Identities=31%  Similarity=0.798  Sum_probs=36.6

Q ss_pred             cCCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      .+...|+||++...+   +..+| |+|. ||..|+..    ...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            346799999998644   46788 9999 99999984    4789999998754

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.10  E-value=1.1e-06  Score=66.74  Aligned_cols=52  Identities=19%  Similarity=0.317  Sum_probs=43.5

Q ss_pred             CcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCc
Q 041871          101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI  155 (415)
Q Consensus       101 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~  155 (415)
                      ..|+||++.+.++   .+++.|||+|...||.+|+..+.+||+++..+...+...
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip   55 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE   55 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence            5899999999977   344239999999999999998888999999987665543

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.06  E-value=1.1e-06  Score=69.83  Aligned_cols=44  Identities=34%  Similarity=0.782  Sum_probs=36.2

Q ss_pred             CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCcccccccC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVNA  150 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~~  150 (415)
                      +...|+||++.+...   ..+| |||. ||..|+..|    ..||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEEEINS---TFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSSBCCE---EEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCCEeEEeCcccCcE---EEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            346899999986553   5677 9999 999999987    489999998864

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=98.03  E-value=4e-07  Score=101.04  Aligned_cols=101  Identities=8%  Similarity=-0.042  Sum_probs=61.5

Q ss_pred             cccccchhHHHHHHhcCCCCCcccccccCCCCCccccCcchhhccCCCcccccCcccccccccccccCCCCCC------C
Q 041871          122 CKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTIFAYSNSMRFMFNNSERREDSNIELFIQREEEHRGSSRFS------I  195 (415)
Q Consensus       122 C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~~~~~~s~~~~~~~~~~~~~~~~el~i~~~~g~~G~gRy~------~  195 (415)
                      +.+.++..|+..|  ....||+|+............ ...   ..+.....+....++|+|+.||++|||||.      .
T Consensus       176 ~~~~~~~~~~~~w--~~~~~~~c~h~~~~~~~~~~~-~~~---~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~  249 (854)
T 3ihp_A          176 ADSASRKQEVQAW--DGEVRQVSKHAFSLKQLDNPA-RIP---PCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGN  249 (854)
T ss_dssp             ------------------CCCBCTTTTTCCCCSSCC-CCC---SSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCC
T ss_pred             cCCHHHHHHHHhh--cCccCCCCcCccccccccccc-cCC---CCCCcCcCcCCcCceEEEecCCCccccccccCCCCCc
Confidence            7788999999999  455699998764322111000 000   011233456677799999999999999997      6


Q ss_pred             CccccccCCCChhhhHHHhhhhcC-----CCchhhhhccccc
Q 041871          196 GSSFRKNKEPNKEEELLIQEEAVD-----GDDDERILHKHNH  232 (415)
Q Consensus       196 Ghafrh~~~~~ke~~~l~~~e~~~-----~~~~~~~~~~~~H  232 (415)
                      +||.+||    ++++|.+...+++     ..+|.|..+.|+.
T Consensus       250 ~ha~~H~----~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v~  287 (854)
T 3ihp_A          250 NHAVEHY----RETGYPLAVKLGTITPDGADVYSYDEDDMVL  287 (854)
T ss_dssp             SHHHHHH----HHHCCCEEEETTCCBTTBCCEEETTTTEECB
T ss_pred             hHHHHHH----hhcCCcEEEEcCCcCCCCCeEEEccCCCeee
Confidence            8999999    8999999998888     9999999888773

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.97  E-value=1.4e-06  Score=87.39  Aligned_cols=43  Identities=28%  Similarity=0.724  Sum_probs=36.8

Q ss_pred             CCCcccccccccccccceEecCccccc-cchhHHHHHHhcCCCCCccccccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHA-FHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      +...|+||++.+..+   ..+| |||. ||..|+..|    ..||+||..+.
T Consensus       294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            467899999998665   4567 9999 999999988    78999999875

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A

Probab=97.87  E-value=1.2e-06  Score=74.33  Aligned_cols=63  Identities=10%  Similarity=-0.052  Sum_probs=55.9

Q ss_pred             cccCcccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhccccceEEecc
Q 041871          172 REDSNIELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNHKIIVSD  238 (415)
Q Consensus       172 ~~~~~~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~HRiI~S~  238 (415)
                      .+....++|+|+.||++|||||..+||.+||    ++++|.+...+++..+|.|..+.|+|+-.+.|
T Consensus        29 ~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~----~~t~H~~~~~l~~~~vwCy~cd~~V~~~~L~d   91 (109)
T 3c5k_A           29 DCGTIQENWVCLSCYQVYCGRYINGHMLQHH----GNSGHPLVLSYIDLSAWCYYCQAYVHHQALLD   91 (109)
T ss_dssp             TTCCCSSEEEETTTCCEEECTTTTCHHHHHH----HHHCCCEEEETTTCCEEETTTTEEBCCGGGHH
T ss_pred             cccCCCCeeeeeecCccccCCCcChHHHHHh----cccCCCEEEECCCCCEEECCCCCEEecccccC
Confidence            3455678999999999999999999999999    89999999999999999999999998754433

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.68  E-value=3.6e-05  Score=73.37  Aligned_cols=53  Identities=21%  Similarity=0.522  Sum_probs=42.5

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCC--CCCcccccccCCCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS--SCPLCRLKVNAEDPT  154 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~--sCPlCR~~v~~~~~~  154 (415)
                      ....|.||.+....+.   ..+.|+|.||..|+..|++.+.  .||.|+.......+.
T Consensus       179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~  233 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK  233 (238)
T ss_dssp             TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred             CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence            4678999999988663   4445999999999999997654  899999987665444

>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5

Probab=97.60  E-value=5.2e-06  Score=69.61  Aligned_cols=53  Identities=13%  Similarity=-0.079  Sum_probs=46.5

Q ss_pred             ccccccccccccCCCCC-CCCccccccCCCChhhhHH--HhhhhcCCCchhhhhccccce
Q 041871          177 IELFIQREEEHRGSSRF-SIGSSFRKNKEPNKEEELL--IQEEAVDGDDDERILHKHNHK  233 (415)
Q Consensus       177 ~el~i~~~~g~~G~gRy-~~Ghafrh~~~~~ke~~~l--~~~e~~~~~~~~~~~~~~~HR  233 (415)
                      .+||+|+.||++||+|| ..+||.+||    ++++|.  ++.+.++..+|.|..|.|++-
T Consensus        32 v~LwlCL~CG~VGC~r~s~~~HA~~H~----~~t~Hpl~~S~~~~~~~vwcY~cd~~V~~   87 (102)
T 2ida_A           32 VHLRICRTCGHVGCCDDSPHKHATRHF----HATGHPIIEGYDPPEGWGWCYVDEVMFDL   87 (102)
T ss_dssp             SCBEEESSSCCCCBCTTSTTCHHHHHH----HHHCCCEEEESSSCSCEEEETTTTEEEEC
T ss_pred             hheeeeeEcCCCcccCCCccHHHHHHH----hccCCCEEEEEecCCCCEEEcCCCcEEEC
Confidence            47999999999999999 789999999    899999  556666778999999999853

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.37  E-value=9.8e-05  Score=61.48  Aligned_cols=46  Identities=28%  Similarity=0.546  Sum_probs=36.3

Q ss_pred             cccccccccccccceEecCccccccchhHHHHHHh-cCCCCCcccccccC
Q 041871          102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNA  150 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v~~  150 (415)
                      -|++|--.+.  ...+.+| |+|+||.+|+..|.+ ..++||.|+.++..
T Consensus         3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            4777766543  3467888 999999999999975 46789999998753

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=92.73  E-value=0.073  Score=42.98  Aligned_cols=35  Identities=11%  Similarity=0.388  Sum_probs=26.0

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHH
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQW  134 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W  134 (415)
                      ++..|+||++.+..+....-+. |+|.||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            3568999998754433333466 9999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=91.57  E-value=0.13  Score=39.34  Aligned_cols=47  Identities=26%  Similarity=0.410  Sum_probs=34.1

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcC----CCCCcccccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH----SSCPLCRLKV  148 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~sCPlCR~~v  148 (415)
                      .....|.||.+.    ..+.....|...||..|+...|...    -.||.|....
T Consensus        10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            345689999753    3455555799999999998877543    2599997643

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=89.86  E-value=0.032  Score=56.89  Aligned_cols=49  Identities=8%  Similarity=-0.142  Sum_probs=43.6

Q ss_pred             ccccccccccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhcccc
Q 041871          177 IELFIQREEEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHN  231 (415)
Q Consensus       177 ~el~i~~~~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~  231 (415)
                      .++|+|+.||+.|||+  .+|+..|+    ++++|.+....++..+|.|..+.|+
T Consensus        60 ~~~~~cl~cg~~~c~~--~~h~~~H~----~~~~h~~~~~~~~~~~~c~~~~~~v  108 (476)
T 3mhs_A           60 GATFMCLQCGFCGCWN--HSHFLSHS----KQIGHIFGINSNNGLLFCFKCEDYI  108 (476)
T ss_dssp             SSEEEESSSSCEEETT--TTHHHHHH----HHHCCCEEEETTTCCEEETTTTEEE
T ss_pred             CCceEeCCCCCCccCC--chHHHHHh----cccCCcEEEECCCCcEEeCCCCCCc
Confidence            6899999999999998  89999999    8999999999888899988766554

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=82.04  E-value=0.7  Score=34.46  Aligned_cols=46  Identities=33%  Similarity=0.682  Sum_probs=32.2

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhc----CCCCCccccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK----HSSCPLCRLK  147 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~  147 (415)
                      .....|.||...    ..+.....|...||..|+..-+..    .-.||.|...
T Consensus         9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            456689999863    345555568999999999875432    2359999653

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=81.18  E-value=0.39  Score=44.10  Aligned_cols=46  Identities=30%  Similarity=0.462  Sum_probs=33.3

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcC----CCCCcccccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH----SSCPLCRLKV  148 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~sCPlCR~~v  148 (415)
                      .+..|.+|...    ..+.....|...||..|+.+-+...    -.||.|+..-
T Consensus         6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            45689999843    3455666799999999997765432    3599998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	4e-21
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	4e-14
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	4e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	6e-12
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	7e-12
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	4e-10
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	4e-09
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	1e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-08
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	1e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-05
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	3e-04
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	0.001
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	0.002

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 83.8 bits (207), Expect = 4e-21
 Identities = 30/49 (61%), Positives = 36/49 (73%)

Query: 100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
           G+ECAVCL++ ED E  R LP+C H FH  C+D WL  HS+CPLCRL V
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 65.0 bits (158), Expect = 4e-14
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
            C +CL    +  +      C HAF   CI +W+ ++ +CPLC++ V
Sbjct: 7   RCPICLEDPSNYSMA---LPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 4e-13
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAE 151
           +EC +C+   E  +I      C +     C  +    ++  CP CR     +
Sbjct: 1   VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 6e-12
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAEDPTI 155
           C +C    +D +I      C H    SC+  W E +   CP CR ++   +P +
Sbjct: 26  CKICAENDKDVKIE----PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 7e-12
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 14/58 (24%)

Query: 102 ECAVCLSKFEDTEILRLLP--------------KCKHAFHISCIDQWLEKHSSCPLCR 145
            CA+C +   D  I                    C HAFH  CI +WL+    CPL  
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 99  QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKV 148
           Q L C  C ++ +  ++L     C H     C++        CP+C+   
Sbjct: 5   QFLRCQQCQAEAKCPKLL----PCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 4e-10
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 101 LECAVCLSKFEDTEILRLLP-KCKHAFHISCIDQWLE-KHSSCPLCRLKVNAED 152
             C  C +       L+L+   C H    SC+D        +CP C   +   +
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 50.2 bits (119), Expect = 4e-09
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 101 LECAVCLSKFEDTEILRLLPK-CKHAFHISCIDQWLEKH--SSCPLCRLKVN 149
             C +C  +  +               H SC+  WL     ++C +C +  N
Sbjct: 7   PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-----HSSCPLCRLKV 148
              +  SK     ++  L KC HAFH+ C+              CP C+   
Sbjct: 41  YSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 92  SSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS---SCPLCRLKV 148
           + +   ++ LEC +CL   ++        KC H F   C+ + L +      CPLC+  +
Sbjct: 13  NVINAMQKILECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

Query: 149 NAED 152
               
Sbjct: 69  TKRS 72

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLE-KHSSCPLCRLKVNAED 152
           + C +C     D         CKH F   CI + L+   S CP CR      D
Sbjct: 24  ISCQICEHILADPVETS----CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 96  GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHS--------SCPLCR 145
           GS     C +CL ++   ++  +   C+  F   C+ Q++E           SCP   
Sbjct: 1   GSSGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 92  SSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE 151
           ++L   ++ L C+ C +   +   L     C+H F  +C+   +     CP+C      +
Sbjct: 14  AALDRLEKLLRCSRCTNILREPVCL---GGCEHIFCSNCVSDCIGTG--CPVCYTPAWIQ 68

Query: 152 DPTI 155
           D  I
Sbjct: 69  DLKI 72

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 101 LECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAED 152
           + CA+         +    PK +  F  S ++Q+++   + P+    ++ E+
Sbjct: 1   MLCAISGKVPRRPVLS---PKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 5/51 (9%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS-----CPLCRLK 147
           +C  C   +   E       C+  FH  C+     +        CP C  K
Sbjct: 8   QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS----CPLCRLKVNAEDP 153
              +C    +  +++ +  +C+  FH+ C    L+        C LC +  + ++ 
Sbjct: 6   SATICRVCQKPGDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEE 60

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 103 CAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSS----CPLCR 145
           C VC  K  + + L L  +C  AFH+ C+   L +       CP C+
Sbjct: 3   CKVC-RKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.53
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.28
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.27
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.19
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.19
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.17
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.12
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.07
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.96
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.96
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.87
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.84
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.8
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.74
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.74
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.6
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.27
d2g45a1	113	Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum	97.21
d2uzga1	95	Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H	97.07
d2idaa1	102	Hypothetical protein RPA1320 {Rhodopseudomonas pal	97.06
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	86.87
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	86.58
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	81.68

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.53  E-value=1.6e-15  Score=112.09  Aligned_cols=52  Identities=58%  Similarity=1.266  Sum_probs=47.0

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      +++.+|+||++.|..++.+..++.|+|.||..||..|++.+.+||+||+++.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4566899999999999988888779999999999999999999999998763

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.28  E-value=8.5e-13  Score=100.76  Aligned_cols=48  Identities=35%  Similarity=0.934  Sum_probs=41.6

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ....|+||++.+..+  .+.++ |||.||..||..|++.+.+||+||.++.
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            456899999999654  45677 9999999999999999999999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.9e-13  Score=96.07  Aligned_cols=49  Identities=22%  Similarity=0.468  Sum_probs=40.6

Q ss_pred             cccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccC
Q 041871          102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNA  150 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~  150 (415)
                      +|+||+++|..++....+..|||.||..||.+|++.+ ..||+||.++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            7999999998776654433499999999999999864 469999998864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=4.9e-12  Score=105.05  Aligned_cols=54  Identities=26%  Similarity=0.603  Sum_probs=41.4

Q ss_pred             CCCcccccccccccc---------------cceEecCccccccchhHHHHHHhcC-----CCCCcccccccCCCC
Q 041871           99 QGLECAVCLSKFEDT---------------EILRLLPKCKHAFHISCIDQWLEKH-----SSCPLCRLKVNAEDP  153 (415)
Q Consensus        99 e~~~C~ICle~~~~~---------------~~~~~lp~C~H~FH~~CI~~WL~~~-----~sCPlCR~~v~~~~~  153 (415)
                      .+..|+||++.|..+               ..+.+++ |+|.||..||..||...     .+||+||..+..+..
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~   97 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG   97 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccCcC
Confidence            355899999998543               2344566 99999999999999753     479999998865543

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.5e-12  Score=101.36  Aligned_cols=50  Identities=32%  Similarity=0.679  Sum_probs=41.2

Q ss_pred             CCCccccccccccccc---------------ceEecCccccccchhHHHHHHhcCCCCCccccccc
Q 041871           99 QGLECAVCLSKFEDTE---------------ILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVN  149 (415)
Q Consensus        99 e~~~C~ICle~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~  149 (415)
                      ....|+||++.+..+.               .+..++ |+|.||..||.+||+.+.+||+||.+..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            3557999999886543               244566 9999999999999999999999999764

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.6e-12  Score=95.01  Aligned_cols=54  Identities=20%  Similarity=0.456  Sum_probs=41.7

Q ss_pred             CCCcccccccccccc-c-ceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871           99 QGLECAVCLSKFEDT-E-ILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP  153 (415)
Q Consensus        99 e~~~C~ICle~~~~~-~-~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~  153 (415)
                      ++.+|+||++.+..+ + .+.+++ |||.||..||..|+.. +..||+||..+...+.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            457999999986443 3 234455 9999999999999965 4579999998866544

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.6e-11  Score=95.17  Aligned_cols=50  Identities=30%  Similarity=0.842  Sum_probs=41.3

Q ss_pred             CCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871          100 GLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP  153 (415)
Q Consensus       100 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~  153 (415)
                      ...|+||++.+..+   ++++ |||.||..||..||.. +..||+||..+...+.
T Consensus        23 ~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          23 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP   73 (79)
T ss_dssp             TTBCTTTSSSBCCE---ECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred             CCCCccCCCcCCCe---EEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCCce
Confidence            34799999988654   5677 9999999999999975 5679999999976543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=1.8e-11  Score=89.98  Aligned_cols=49  Identities=20%  Similarity=0.336  Sum_probs=42.6

Q ss_pred             cccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCC
Q 041871          102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDP  153 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~  153 (415)
                      .|+||++.+.++.   .++.|||+||..||.+||+.+.+||+||.++..++.
T Consensus         2 ~C~Ic~~~~~~Pv---~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dL   50 (56)
T d2baya1           2 LCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   50 (56)
T ss_dssp             CCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             CCccCCchHHhcC---ccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence            6999999998773   445699999999999999999999999999876654

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.8e-10  Score=94.05  Aligned_cols=51  Identities=29%  Similarity=0.699  Sum_probs=41.9

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcC---CCCCcccccccCCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH---SSCPLCRLKVNAEDP  153 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v~~~~~  153 (415)
                      +...|+||++.|.++.   .++ |||.||..||..|+...   ..||+||..+...+.
T Consensus        20 ~~l~CpIC~~~~~~pv---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l   73 (103)
T d1jm7a_          20 KILECPICLELIKEPV---STK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (103)
T ss_dssp             HHTSCSSSCCCCSSCC---BCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             cCcCCCccCchhCCeE---EcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhC
Confidence            3468999999998773   456 99999999999999764   379999998876554

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.5e-10  Score=92.39  Aligned_cols=51  Identities=31%  Similarity=0.617  Sum_probs=42.1

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP  153 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~  153 (415)
                      +...|+||++.+.++   .+++ |||.||..||..|++. +..||+||.++.+.+.
T Consensus        22 ~~l~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l   73 (86)
T d1rmda2          22 KSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (86)
T ss_dssp             HHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             cCcCCccCCcchhcc---eecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChhhc
Confidence            345899999999876   4566 9999999999999975 4679999998876554

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2e-10  Score=84.55  Aligned_cols=46  Identities=28%  Similarity=0.665  Sum_probs=38.4

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAE  151 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~  151 (415)
                      +..+|+||++.|.++   +++| |||.||..||..|   ...||+||..+...
T Consensus         5 ~~l~C~IC~~~~~~p---~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             CCCCCcccCcccCCC---EEec-CCCHHhHHHHHcC---CCcCcCCCCcccCC
Confidence            346999999999876   4567 9999999999876   56799999988654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.84  E-value=8.9e-10  Score=81.54  Aligned_cols=52  Identities=19%  Similarity=0.502  Sum_probs=38.4

Q ss_pred             cCCCcccccccccccccceE-ecCccccccchhHHHHHHh--cCCCCCccccccc
Q 041871           98 KQGLECAVCLSKFEDTEILR-LLPKCKHAFHISCIDQWLE--KHSSCPLCRLKVN  149 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~-~lp~C~H~FH~~CI~~WL~--~~~sCPlCR~~v~  149 (415)
                      .+...|+||++.+..+.... ....|+|.||..||..|+.  .+.+||+||+.+.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45678999999886553221 1113579999999999995  3568999998864

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=6.2e-10  Score=89.86  Aligned_cols=51  Identities=24%  Similarity=0.598  Sum_probs=40.8

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPT  154 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~  154 (415)
                      +..+|+||++.|..+..  +.+ |||.||..||..|+.  ..||+||..+...+..
T Consensus        21 ~~l~C~IC~~~~~~pv~--~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~l~   71 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVC--LGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK   71 (97)
T ss_dssp             HTTSCSSSCSCCSSCBC--CCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred             hcCCCccCCchhhcCce--eCC-CCCchhHHHHHHHHh--ccccccCCcCchhhCc
Confidence            45699999999988732  234 999999999999974  4699999988765543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=3.4e-09  Score=82.09  Aligned_cols=54  Identities=19%  Similarity=0.443  Sum_probs=44.8

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcC-CCCCcccccccCCCCCc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH-SSCPLCRLKVNAEDPTI  155 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v~~~~~~~  155 (415)
                      .+...|+||++.|.++.   +++ |||.||..||..|+..+ ..||.|+..+...+...
T Consensus         6 P~~l~CpIc~~~m~dPV---~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~p   60 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPV---IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP   60 (78)
T ss_dssp             SSSSSCTTTSCCCSSEE---EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred             CccCCCcCcCchhhCce---Ecc-CCCcchHHHHHHHHHHCCCCCCcccccCCcccccc
Confidence            36789999999999883   456 99999999999999764 57999999987665543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.1e-09  Score=83.84  Aligned_cols=51  Identities=14%  Similarity=0.212  Sum_probs=42.7

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhc-CCCCCcccccccCCCC
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEK-HSSCPLCRLKVNAEDP  153 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v~~~~~  153 (415)
                      +...|+||++.|.++.   +++ |||.||..||..|+.. +.+||+|+..+...+.
T Consensus         6 ~~l~CpIc~~l~~dPv---~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l   57 (80)
T d2c2la2           6 DYLCGKISFELMREPC---ITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL   57 (80)
T ss_dssp             STTBCTTTCSBCSSEE---ECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred             ccccCcCcCchhhhhc---ccC-CcCeecHHHHHHHHhcCCccCCCcccccccccc
Confidence            5679999999999883   466 9999999999999975 5579999998765543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.6e-08  Score=82.04  Aligned_cols=54  Identities=15%  Similarity=0.164  Sum_probs=45.0

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHHHhcCCCCCcccccccCCCCCc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKHSSCPLCRLKVNAEDPTI  155 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v~~~~~~~  155 (415)
                      +...||||++.|.++.   +++.|+|.|+..||..||..+..||+|+.++...+...
T Consensus        21 ~~f~CPI~~~lm~dPV---~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~p   74 (98)
T d1wgma_          21 DEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP   74 (98)
T ss_dssp             TTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred             HHhCCcCchhHHHHHH---hcccccchhhHHHHHHHHHhcCCcccccccccchhhcc
Confidence            4689999999999984   56635568999999999999999999999987665543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.9e-07  Score=74.15  Aligned_cols=48  Identities=23%  Similarity=0.578  Sum_probs=37.7

Q ss_pred             cCCCcccccccccccccceEecCccccccchhHHHHHHhcC--------CCCCcccc
Q 041871           98 KQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH--------SSCPLCRL  146 (415)
Q Consensus        98 ~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--------~sCPlCR~  146 (415)
                      .....|+||++++...+....++ |+|.||..|+..|+...        ..||.|.-
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            45679999999997776666665 99999999999998531        24998643

>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=2.7e-05  Score=64.40  Aligned_cols=56  Identities=9%  Similarity=-0.041  Sum_probs=47.0

Q ss_pred             cccCcccccccccccccCCCCCC------CCccccccCCCChhhhHHHhhhhcC-----CCchhhhhcccc
Q 041871          172 REDSNIELFIQREEEHRGSSRFS------IGSSFRKNKEPNKEEELLIQEEAVD-----GDDDERILHKHN  231 (415)
Q Consensus       172 ~~~~~~el~i~~~~g~~G~gRy~------~Ghafrh~~~~~ke~~~l~~~e~~~-----~~~~~~~~~~~~  231 (415)
                      .++...++|+|+.||++|||||.      .+||.+||    ++++|.+...+++     .++|.|.-|.||
T Consensus        29 ~C~~~~~lWlCL~CG~vgCgR~~~~~~~~~~HA~~H~----~~t~H~l~v~l~t~~~~~~~vwCY~cd~~V   95 (113)
T d2g45a1          29 KCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHY----RETGYPLAVKLGTITPDGADVYSYDEDDMV   95 (113)
T ss_dssp             SSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHH----HHHCCCEEEETTCCBTTBCCEEETTTTEEE
T ss_pred             CCCCcCCEEEEecCCCCccCcccccCCCCChHHHHHH----HhcCCCEEEEecCCCCCCceEEEecCCCEE
Confidence            34566789999999999999986      68999999    8899998876643     569999988876

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=2.2e-05  Score=62.91  Aligned_cols=52  Identities=12%  Similarity=-0.060  Sum_probs=48.0

Q ss_pred             cccccccc--ccccCCCCCCCCccccccCCCChhhhHHHhhhhcCCCchhhhhccccc
Q 041871          177 IELFIQRE--EEHRGSSRFSIGSSFRKNKEPNKEEELLIQEEAVDGDDDERILHKHNH  232 (415)
Q Consensus       177 ~el~i~~~--~g~~G~gRy~~Ghafrh~~~~~ke~~~l~~~e~~~~~~~~~~~~~~~H  232 (415)
                      .++|+|+.  ||+.|||||..+||..||    ++++|.+...+.+..+|.|.-|.|+.
T Consensus        34 ~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~----~~~~H~~~~~l~t~~vwCy~Cd~~v~   87 (95)
T d2uzga1          34 PNLWACLENRCSYVGCGESQVDHSTIHS----QETKHYLTVNLTTLRVWCYACSKEVF   87 (95)
T ss_dssp             SSCEEECCTTCCCEECCTTTTCHHHHHH----HHTTCCEEEETTTTEEEETTTTEEEC
T ss_pred             CCEEEeccccCCcEEccCCcCcHHHHHH----hhhCCCEEEECCCCeEEECCCCCEEE
Confidence            57999994  999999999999999999    88999999999999999999888764

>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Hypothetical protein RPA1320
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=97.06  E-value=2.4e-05  Score=63.55  Aligned_cols=57  Identities=14%  Similarity=-0.098  Sum_probs=45.6

Q ss_pred             cccccccccccCC-CCCCCCccccccCCCChhhhHHHh--hhhcCCCchhhhhccccceEEecc
Q 041871          178 ELFIQREEEHRGS-SRFSIGSSFRKNKEPNKEEELLIQ--EEAVDGDDDERILHKHNHKIIVSD  238 (415)
Q Consensus       178 el~i~~~~g~~G~-gRy~~Ghafrh~~~~~ke~~~l~~--~e~~~~~~~~~~~~~~~HRiI~S~  238 (415)
                      +||.|+.||++|| +||..+||..||    ++++|.+.  ++.++..+|.|+.|.|++.-.++.
T Consensus        33 ~L~lCL~CG~vgC~~~~~~~Ha~~H~----~~t~Hpl~~sl~~~~~~vwCY~~d~~v~~p~~~~   92 (102)
T d2idaa1          33 HLRICRTCGHVGCCDDSPHKHATRHF----HATGHPIIEGYDPPEGWGWCYVDEVMFDLSDRMT   92 (102)
T ss_dssp             CBEEESSSCCCCBCTTSTTCHHHHHH----HHHCCCEEEESSSCSCEEEETTTTEEEECTTTCC
T ss_pred             ccccccccCCEecCCCCcccHHHHHH----HhcCCCeEEEecCCCceEEeecCcceeeCCCCCC
Confidence            3556999999999 578889999999    88999765  444456699999999998755543

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.11  Score=35.46  Aligned_cols=44  Identities=39%  Similarity=0.760  Sum_probs=31.0

Q ss_pred             cccccccccccccceEecCccccccchhHHHHHHhcC----CCCCcccc
Q 041871          102 ECAVCLSKFEDTEILRLLPKCKHAFHISCIDQWLEKH----SSCPLCRL  146 (415)
Q Consensus       102 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~sCPlCR~  146 (415)
                      .|.||...-.. ..++.-..|...||..|+..-+...    -.||.|+.
T Consensus         2 ~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC-CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            58899766443 3455566799999999998865432    24998864

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.58  E-value=0.092  Score=37.58  Aligned_cols=49  Identities=27%  Similarity=0.528  Sum_probs=35.9

Q ss_pred             CCCcccccccccccccceEecCccccccchhHHHHH---Hh--cCCCCCccccc
Q 041871           99 QGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQW---LE--KHSSCPLCRLK  147 (415)
Q Consensus        99 e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W---L~--~~~sCPlCR~~  147 (415)
                      ....|.||......+...+....|+.-||..|+..=   ..  .+-.||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            456999999988777666666679999999998531   11  23469999754

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.68  E-value=0.51  Score=35.94  Aligned_cols=37  Identities=19%  Similarity=0.491  Sum_probs=27.1

Q ss_pred             CCcCCCcccccccccccccceEecCccccccchhHHHHH
Q 041871           96 GSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISCIDQW  134 (415)
Q Consensus        96 ~~~e~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W  134 (415)
                      ....+..|.|| +.+...... -..-|+-+||..|+.+-
T Consensus        11 ~v~~D~mC~vC-~v~t~~~l~-pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          11 PVVNDEMCDVC-EVWTAESLF-PCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTT-CCCCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred             CCCcCcccccc-Cccccccee-cceeecchhhHHHHHHh
Confidence            34567799999 677666544 22248999999999985