Citrus Sinensis ID: 041894
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 219 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LW63 | 715 | Putative pentatricopeptid | yes | no | 0.794 | 0.243 | 0.515 | 2e-42 | |
| Q9SS83 | 1028 | Pentatricopeptide repeat- | no | no | 0.680 | 0.144 | 0.313 | 2e-15 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.598 | 0.148 | 0.318 | 2e-14 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.698 | 0.206 | 0.285 | 2e-14 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.639 | 0.201 | 0.321 | 4e-14 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.648 | 0.186 | 0.278 | 4e-14 | |
| Q9C9I6 | 681 | Pentatricopeptide repeat- | no | no | 0.712 | 0.229 | 0.289 | 6e-14 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.689 | 0.157 | 0.303 | 1e-13 | |
| Q0WQW5 | 638 | Pentatricopeptide repeat- | no | no | 0.684 | 0.235 | 0.281 | 2e-13 | |
| Q4V389 | 703 | Pentatricopeptide repeat- | no | no | 0.707 | 0.220 | 0.284 | 4e-13 |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 125/192 (65%), Gaps = 18/192 (9%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M+S+K LI L+KNP IK+KSQAKQLHAQ +T + S S ++ IY N L+H++L
Sbjct: 1 MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEAL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
L TLK+P P +AWKS+IRC T L ++L FV M SG PDHNVFPSVLKSCT++
Sbjct: 60 LLFKTLKSP-PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMM 118
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
+D RFGESVH I+RLG+D DLYT NALMNMYA+ M G + SV
Sbjct: 119 MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM---------------GSKISVG 163
Query: 180 EVLDKIPERNGN 191
V D++P+R N
Sbjct: 164 NVFDEMPQRTSN 175
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T++ P S+ + Q H QI K +L LL +Y N + ++ L
Sbjct: 634 TIVEACHKPESL---TLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSE 690
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L +P V W ++ +QNG E+L + M GV PD F +VL+ C++L R
Sbjct: 691 LSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLRE 750
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157
G ++H+ I L DLD T+N L++MYA+ +M
Sbjct: 751 GRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDM 783
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81
+ +++HA + +S F +L+ Y++F SL + + W SIIR
Sbjct: 22 ELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAF 81
Query: 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141
++NGL E+L + ++ S V PD FPSV+K+C L D G+ V+ I+ +G + DL
Sbjct: 82 SKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141
Query: 142 YTNNALMNMYAQ 153
+ NAL++MY++
Sbjct: 142 FVGNALVDMYSR 153
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDTLKTPAPPVAW 74
KT + +HAQ+ K N+ + +S+L+ + +F + ++ + T++ P + W
Sbjct: 44 KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLI-W 102
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
++ R + V +L +V MI G+ P+ FP VLKSC F+ G+ +H +++
Sbjct: 103 NTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLK 162
Query: 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
LG DLDLY + +L++MY Q+ GR H+V DK P R+
Sbjct: 163 LGCDLDLYVHTSLISMYVQN------------------GRLEDAHKVFDKSPHRD 199
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AW 74
S K+Q KQ+HA++ S FLI++L+ ++F + + + D L P P + W
Sbjct: 30 SATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL--PRPQIFPW 87
Query: 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134
+IIR ++N ++L + M + V PD FP +LK+C+ L + G VHA + R
Sbjct: 88 NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147
Query: 135 LGVDLDLYTNNALMNMYAQSQNM 157
LG D D++ N L+ +YA+ + +
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRL 170
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIRC 80
+ Q HA+I K+ N ++ ++L+ Y+N+N +D+ +L ++ P P + ++ S+I
Sbjct: 33 KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSI--PDPTIYSFSSLIYA 90
Query: 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140
T+ L +S+ F RM G+ PD +V P++ K C L F+ G+ +H G+D+D
Sbjct: 91 LTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150
Query: 141 LYTNNALMNMYAQSQNMD--MHIYDRF 165
+ ++ +MY + M ++DR
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRM 177
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V ++ Q+HA + L+ +L+ Y+ FNL +++ +++
Sbjct: 48 SLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIEN-SDI 106
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N L E + + RM+ G+ PD +PSVLK+C +D FG V
Sbjct: 107 LHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVV 166
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDRF 165
H I LY NAL++MY + +NM + ++DR
Sbjct: 167 HGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRM 205
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
Query: 18 KTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKS 76
+ SQ +QLH++IFKT FL +L+F+Y + D+ + D + AW +
Sbjct: 94 RAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTA-FAWNT 152
Query: 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136
+I NG +L + M GV + FP++LK+C L D R G +H+ +++LG
Sbjct: 153 MIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG 212
Query: 137 VDLDLYTNNALMNMYAQSQNMDM--HIYDRFQGFG 169
+ NAL++MYA++ ++ ++D FQ G
Sbjct: 213 YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 24/174 (13%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
SQ KQLHA +T EP + FL ++L + ++F+ V+ + + D+++ + W ++
Sbjct: 62 SQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS-FMWNTL 120
Query: 78 IRCCTQN-GLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
IR C + E+ + +M+ G PD + FP VLK+C + F G+ VH I++
Sbjct: 121 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 180
Query: 136 GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189
G D+Y NN L+++Y +D+ +V D++PER+
Sbjct: 181 GFGGDVYVNNGLIHLYGSCGCLDL------------------ARKVFDEMPERS 216
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q4V389|PPR55_ARATH Pentatricopeptide repeat-containing protein At1g22830 OS=Arabidopsis thaliana GN=PCMP-E24 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP 68
+LL V +QLHA + L+ +L+ Y+ FNL+ ++ + + +
Sbjct: 88 SLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEI- 146
Query: 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128
P+ W +I +N ES++ + RM+ G+ D +PSV+K+C L+DF +G V
Sbjct: 147 LHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVV 206
Query: 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
H I +LY NAL++MY + +D+ ++DR
Sbjct: 207 HGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDR 244
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 219 | ||||||
| 296085848 | 644 | unnamed protein product [Vitis vinifera] | 0.817 | 0.277 | 0.537 | 2e-47 | |
| 359481040 | 709 | PREDICTED: putative pentatricopeptide re | 0.817 | 0.252 | 0.537 | 2e-47 | |
| 307136183 | 773 | hypothetical protein [Cucumis melo subsp | 0.849 | 0.240 | 0.495 | 5e-43 | |
| 449433569 | 705 | PREDICTED: putative pentatricopeptide re | 0.844 | 0.262 | 0.492 | 6e-42 | |
| 449508565 | 712 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.844 | 0.259 | 0.492 | 7e-42 | |
| 297831082 | 679 | pentatricopeptide repeat-containing prot | 0.712 | 0.229 | 0.553 | 2e-41 | |
| 334185563 | 715 | pentatricopeptide repeat-containing prot | 0.794 | 0.243 | 0.515 | 1e-40 | |
| 255575883 | 393 | pentatricopeptide repeat-containing prot | 0.474 | 0.264 | 0.487 | 3e-22 | |
| 147780302 | 679 | hypothetical protein VITISV_032008 [Viti | 0.547 | 0.176 | 0.455 | 2e-19 | |
| 356511287 | 674 | PREDICTED: putative pentatricopeptide re | 0.557 | 0.181 | 0.370 | 1e-17 |
| >gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/186 (53%), Positives = 136/186 (73%), Gaps = 7/186 (3%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M +T+ L LL+NP S+K+KSQAKQLHAQI +T P S L+S +L IY+N NL+HDSL
Sbjct: 1 MNTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLP-SPSLLSTILSIYSNLNLLHDSL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ ++L +P +AWKSIIRC T +GL + SL+ F++M+ SG YPDHNVFPSVLKSCTL+
Sbjct: 60 LIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLM 119
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-DMHIYDRFQGFGFNGGREASV 178
D RFGESVH CIIRLG+ DLYT NALMNMY++ ++ +++ Y + F+ G+ + V
Sbjct: 120 KDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKV----FDEGKTSDV 175
Query: 179 HEVLDK 184
+ +K
Sbjct: 176 YSKKEK 181
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/186 (53%), Positives = 136/186 (73%), Gaps = 7/186 (3%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M +T+ L LL+NP S+K+KSQAKQLHAQI +T P S L+S +L IY+N NL+HDSL
Sbjct: 1 MNTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLP-SPSLLSTILSIYSNLNLLHDSL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ ++L +P +AWKSIIRC T +GL + SL+ F++M+ SG YPDHNVFPSVLKSCTL+
Sbjct: 60 LIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLM 119
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-DMHIYDRFQGFGFNGGREASV 178
D RFGESVH CIIRLG+ DLYT NALMNMY++ ++ +++ Y + F+ G+ + V
Sbjct: 120 KDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKV----FDEGKTSDV 175
Query: 179 HEVLDK 184
+ +K
Sbjct: 176 YSKKEK 181
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 137/200 (68%), Gaps = 14/200 (7%)
Query: 2 TSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
TST+ L+N LL+NP+SIK++SQA+QLHAQ+ K + +S +S LL IY++ NL+HDSL
Sbjct: 5 TSTEALVNSLLRNPLSIKSRSQAQQLHAQVLK-FQASSLCNLSLLLSIYSHINLLHDSLR 63
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L +TL P P +AWKS+IRC T +GL +SL F+ M+ SG+YPDHNVFPSVLK+C +L+
Sbjct: 64 LFNTLHFP-PALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
D GES+H IIR+G+D DLYT NALMNMY+ + + +G + +
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYS-----------KLRFLKKSGRQRLGASQ 171
Query: 181 VLDKIPERNGNVELSSGLAG 200
VLD++ ER +V +S L G
Sbjct: 172 VLDEMTERTRSVRTASVLVG 191
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 136/199 (68%), Gaps = 14/199 (7%)
Query: 2 TSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
TST+ L+ LL+NP+SIK++SQA+QLHAQ+ K + +S +S LL IY++ NL+HDSL
Sbjct: 3 TSTEALVKALLRNPLSIKSRSQAQQLHAQVLK-FQASSLCNLSLLLSIYSHINLLHDSLR 61
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L +T+ P P +AWKS+IRC T +GL +SL F+ M+ SG+YPDHNVFPSVLKSC LL+
Sbjct: 62 LFNTIHFP-PALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
D GES+H IIR+G+D DLYT NALMNMY++ + ++ +G + E
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEE-----------SGRQRLGAGE 169
Query: 181 VLDKIPERNGNVELSSGLA 199
V D++ ER +V S L+
Sbjct: 170 VFDEMTERTRSVRTVSVLS 188
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 136/199 (68%), Gaps = 14/199 (7%)
Query: 2 TSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60
TST+ L+ LL+NP+SIK++SQA+QLHAQ+ K + +S +S LL IY++ NL+HDSL
Sbjct: 3 TSTEALVKALLRNPLSIKSRSQAQQLHAQVLK-FQASSLCNLSLLLSIYSHINLLHDSLR 61
Query: 61 LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120
L +T+ P P +AWKS+IRC T +GL +SL F+ M+ SG+YPDHNVFPSVLKSC LL+
Sbjct: 62 LFNTIHFP-PALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
Query: 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180
D GES+H IIR+G+D DLYT NALMNMY++ + ++ +G + E
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEE-----------SGRQRLGAGE 169
Query: 181 VLDKIPERNGNVELSSGLA 199
V D++ ER +V S L+
Sbjct: 170 VFDEMTERTRSVRTVSVLS 188
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 113/159 (71%), Gaps = 3/159 (1%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M+S+K LI L+KNP IK+KSQAKQLHAQ +T + S S ++ IY N L+H++L
Sbjct: 1 MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEAL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
+ TL++P P +AWKS+IRC T L +L FV M SG PDHNVFPSVLKSCT++
Sbjct: 60 LVFKTLESP-PVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMM 118
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
+D RFGESVH I+RLG+D DLYT NALMNMY++ +D
Sbjct: 119 MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGID 157
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 125/192 (65%), Gaps = 18/192 (9%)
Query: 1 MTSTKTLIN-LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M+S+K LI L+KNP IK+KSQAKQLHAQ +T + S S ++ IY N L+H++L
Sbjct: 1 MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEAL 59
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
L TLK+P P +AWKS+IRC T L ++L FV M SG PDHNVFPSVLKSCT++
Sbjct: 60 LLFKTLKSP-PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMM 118
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVH 179
+D RFGESVH I+RLG+D DLYT NALMNMYA+ M G + SV
Sbjct: 119 MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM---------------GSKISVG 163
Query: 180 EVLDKIPERNGN 191
V D++P+R N
Sbjct: 164 NVFDEMPQRTSN 175
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575883|ref|XP_002528839.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531751|gb|EEF33573.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 17/121 (14%)
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
M SG +PDHNVFPSV+KSCTLL+DF+ GESVH CIIRLGVD+DLYT NALMNMYA+ Q+
Sbjct: 1 MRASGKHPDHNVFPSVIKSCTLLLDFKLGESVHGCIIRLGVDVDLYTGNALMNMYAKFQS 60
Query: 157 MDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEKRVVSAGHDAD 216
+D+ +R H++LD++P+R EL ++FEK ++ +
Sbjct: 61 LDLCSSERI-----------ITHKLLDEMPDRICYDEL------LHEFEKGIMGMHQNVS 103
Query: 217 L 217
L
Sbjct: 104 L 104
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 16/136 (11%)
Query: 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156
M+ SG YPDHNVFPSVLKSCTL+ D RFGESVH CIIRLG+ DLYT NALMNMY++ +
Sbjct: 1 MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60
Query: 157 MDMHIYDRFQGFGFNGG----RE----ASVHEVLDKIPER------NGNV-ELSSGLAGC 201
++ RF GG RE ++ H++ ++ ER NG++ ++S+ L
Sbjct: 61 LEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQV 120
Query: 202 NKFEKRVVSAGHDADL 217
N + K+V G +D+
Sbjct: 121 NTY-KKVFDEGKTSDV 135
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 81/154 (52%), Gaps = 32/154 (20%)
Query: 1 MTSTKTLI-NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSL 59
M+S++ ++ +LL+NP ++ KQLHAQI KT
Sbjct: 1 MSSSQNVMRSLLRNPNTVVPTCHVKQLHAQIVKT-------------------------- 34
Query: 60 CLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119
T TP +AW II+C +GLL SL F + G+ PD ++FPS+L++ TL
Sbjct: 35 ----TKATP-HSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLF 89
Query: 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153
F +S+HA +IRLG DLYT NALMNMY++
Sbjct: 90 KHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSK 123
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 219 | ||||||
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.648 | 0.186 | 0.292 | 1.1e-14 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.698 | 0.206 | 0.296 | 3.7e-14 | |
| TAIR|locus:2825379 | 681 | AT1G71490 "AT1G71490" [Arabido | 0.703 | 0.226 | 0.301 | 4.2e-14 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.602 | 0.149 | 0.335 | 4.8e-14 | |
| TAIR|locus:2181201 | 691 | AT5G27110 [Arabidopsis thalian | 0.694 | 0.219 | 0.270 | 5.7e-14 | |
| TAIR|locus:2017744 | 703 | AT1G22830 [Arabidopsis thalian | 0.703 | 0.219 | 0.301 | 7.2e-14 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.721 | 0.153 | 0.298 | 7.7e-14 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.630 | 0.216 | 0.305 | 2.1e-13 | |
| TAIR|locus:2098901 | 783 | AT3G61170 [Arabidopsis thalian | 0.684 | 0.191 | 0.282 | 2.3e-13 | |
| TAIR|locus:2183931 | 822 | AT5G13230 [Arabidopsis thalian | 0.694 | 0.184 | 0.312 | 3.1e-13 |
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 43/147 (29%), Positives = 81/147 (55%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIR 79
S+ Q HA+I K+ N ++ ++L+ Y+N+N +D+ +L ++ P P + ++ S+I
Sbjct: 32 SKTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSI--PDPTIYSFSSLIY 89
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
T+ L +S+ F RM G+ PD +V P++ K C L F+ G+ +H G+D+
Sbjct: 90 ALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDM 149
Query: 140 DLYTNNALMNMYAQSQNM-DMH-IYDR 164
D + ++ +MY + M D ++DR
Sbjct: 150 DAFVQGSMFHMYMRCGRMGDARKVFDR 176
|
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| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 48/162 (29%), Positives = 89/162 (54%)
Query: 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLL---FIYNNFNLVHDSLCLLDT 64
++LL N KT + +HAQ+ K N+ + +S+L+ + +F + ++ + T
Sbjct: 37 LSLLHN---CKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKT 93
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
++ P + W ++ R + V +L +V MI G+ P+ FP VLKSC F+
Sbjct: 94 IQEPNLLI-WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE 152
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM-DMH-IYDR 164
G+ +H +++LG DLDLY + +L++MY Q+ + D H ++D+
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDK 194
|
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| TAIR|locus:2825379 AT1G71490 "AT1G71490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 48/159 (30%), Positives = 82/159 (51%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+LL V ++ Q+HA + +E +S L+ +L+ Y+ FNL +++ +++
Sbjct: 48 SLLSACVDVRAFLAGVQVHAHCISSGVEYHS-VLVPKLVTFYSAFNLHNEAQSIIENSDI 106
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
P+ W +I +N L E + + RM+ G+ PD +PSVLK+C +D FG
Sbjct: 107 -LHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRV 165
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
VH I LY NAL++MY + +NM + ++DR
Sbjct: 166 VHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDR 204
|
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| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 45/134 (33%), Positives = 77/134 (57%)
Query: 21 SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPV-AWKSIIR 79
++ +++HA + +S F +L+ Y++F SL + + +PA V W SIIR
Sbjct: 21 NELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRV-SPAKNVYLWNSIIR 79
Query: 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139
++NGL E+L + ++ S V PD FPSV+K+C L D G+ V+ I+ +G +
Sbjct: 80 AFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFES 139
Query: 140 DLYTNNALMNMYAQ 153
DL+ NAL++MY++
Sbjct: 140 DLFVGNALVDMYSR 153
|
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| TAIR|locus:2181201 AT5G27110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 42/155 (27%), Positives = 79/155 (50%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65
T N++K ++ + + +H + K+ + S L+ +Y FNL +SL + D +
Sbjct: 109 TFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEM 168
Query: 66 KTPAPPVA-WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
P VA W ++I C Q+G ++L F RM SG P+ + +C+ L+
Sbjct: 169 --PERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLER 226
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159
G+ +H ++ G +LD Y N+AL++MY + +++
Sbjct: 227 GKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEV 261
|
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| TAIR|locus:2017744 AT1G22830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 48/159 (30%), Positives = 83/159 (52%)
Query: 9 NLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67
+LL V +QLHA + LE +S L+ +L+ Y+ FNL+ ++ + + +
Sbjct: 88 SLLSTCVGFNEFVPGQQLHAHCISSGLEFDS-VLVPKLVTFYSAFNLLDEAQTITENSEI 146
Query: 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127
P+ W +I +N ES++ + RM+ G+ D +PSV+K+C L+DF +G
Sbjct: 147 -LHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRV 205
Query: 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNMDM--HIYDR 164
VH I +LY NAL++MY + +D+ ++DR
Sbjct: 206 VHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDR 244
|
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| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 49/164 (29%), Positives = 79/164 (48%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64
T++ P S+ + Q H QI K +L LL +Y N + ++ L
Sbjct: 634 TIVEACHKPESL---TLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSE 690
Query: 65 LKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124
L +P V W ++ +QNG E+L + M GV PD F +VL+ C++L R
Sbjct: 691 LSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLRE 750
Query: 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM--DMHIYDRFQ 166
G ++H+ I L DLD T+N L++MYA+ +M ++D +
Sbjct: 751 GRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMR 794
|
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| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 44/144 (30%), Positives = 78/144 (54%)
Query: 21 SQAKQLHAQIFKTL---EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI 77
SQ KQLHA +T EP + FL ++L + ++F+ V+ + + D+++ + W ++
Sbjct: 62 SQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS-FMWNTL 120
Query: 78 IRCCTQN-GLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135
IR C + E+ + +M+ G PD + FP VLK+C + F G+ VH I++
Sbjct: 121 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 180
Query: 136 GVDLDLYTNNALMNMYAQSQNMDM 159
G D+Y NN L+++Y +D+
Sbjct: 181 GFGGDVYVNNGLIHLYGSCGCLDL 204
|
|
| TAIR|locus:2098901 AT3G61170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 44/156 (28%), Positives = 82/156 (52%)
Query: 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHDSLCLL 62
TL ++L+ S+ + +Q+H KT L+ N +++ LL +Y + ++ L
Sbjct: 127 TLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVN---VVNGLLAMYAQCKRISEAEYLF 183
Query: 63 DTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122
+T++ V W S++ +QNG +++ CF + G + FPSVL +C +
Sbjct: 184 ETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSAC 243
Query: 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
R G VH CI++ G ++Y +AL++MYA+ + M+
Sbjct: 244 RVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREME 279
|
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| TAIR|locus:2183931 AT5G13230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 51/163 (31%), Positives = 83/163 (50%)
Query: 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKT---LEPNSRFLISRLLFIYNNFNLVHD 57
M + T LK + + AK +H QI KT L+P R + LL +Y + D
Sbjct: 244 MPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDP--RVGVG-LLQLYTQLGDMSD 300
Query: 58 SLCLLDTL-KTPAPPVAWKSII-RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115
+ + + + K P W +I R C QNG E++ F+RM + V P+ S+L
Sbjct: 301 AFKVFNEMPKNDVVP--WSFMIARFC-QNGFCNEAVDLFIRMREAFVVPNEFTLSSILNG 357
Query: 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158
C + GE +H ++++G DLD+Y +NAL+++YA+ + MD
Sbjct: 358 CAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMD 400
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00033662001 | SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (747 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 219 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-13
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132
+W ++ + G E+L + RM+ +GV PD FP VL++C + D G VHA +
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 133 IRLGVDLDLYTNNALMNMYAQ 153
+R G +LD+ NAL+ MY +
Sbjct: 214 VRFGFELDVDVVNALITMYVK 234
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-13
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD 63
+T + +L+ + + +QLH + KT F+ L+ +Y+ + D+ C+ D
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283
Query: 64 TLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123
+ VAW S++ +G E+L + M SGV D F +++ + L
Sbjct: 284 GMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 124 FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD--MHIYDR 164
+ HA +IR G LD+ N AL+++Y++ M+ +++DR
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-10
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W ++I +NG +E L F M V PD SV+ +C LL D R G +H
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ G +D+ N+L+ MY +
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWG 340
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
V+W ++I +NGL ++L + M V PD SVL +C L D G +H
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGN 191
R G+ + NAL+ MY++ + +D + EV IPE++
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKAL------------------EVFHNIPEKD-V 455
Query: 192 VELSSGLAG 200
+ +S +AG
Sbjct: 456 ISWTSIIAG 464
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-07
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
++W SII N E+L F +M+ + + P+ + L +C + G+ +HA
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNM 157
++R G+ D + NAL+++Y + M
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRM 540
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131
+W +II G E+ F M G + F +L++ L R G+ +H C
Sbjct: 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249
Query: 132 IIRLGVDLDLYTNNALMNMYAQSQNMD 158
+++ GV D + + AL++MY++ +++
Sbjct: 250 VLKTGVVGDTFVSCALIDMYSKCGDIE 276
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.002
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP----VAWKSII 78
AKQ HA + +T P + L+ +Y+ + + D+ + D + P ++W ++I
Sbjct: 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-----PRKNLISWNALI 398
Query: 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL--LVD-----FRFGESVH-- 129
+G +++ F RMI GV P+H F +VL +C L + F+ H
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458
Query: 130 -------ACIIRL 135
AC+I L
Sbjct: 459 KPRAMHYACMIEL 471
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105
V + ++I + G + E+L F M G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 219 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.62 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.55 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.5 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.37 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.26 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.25 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.06 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.05 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.92 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.9 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.85 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.84 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.79 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.78 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.69 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.68 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.61 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.55 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.49 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.49 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.46 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.44 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.42 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.38 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.28 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.23 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.2 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.19 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.18 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.16 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.15 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.11 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.01 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.98 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.98 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.91 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.9 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.89 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.88 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.87 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.82 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.81 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.76 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.74 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.63 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.61 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.6 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.58 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.55 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.55 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.54 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.45 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.42 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.38 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.38 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.37 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.36 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.36 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.34 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.33 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.27 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.25 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.21 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.19 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.19 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.16 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.15 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.1 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 97.09 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 97.06 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.03 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.0 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.85 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.82 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 96.76 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.57 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.57 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 96.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.48 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.48 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.46 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.45 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 96.34 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.3 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.26 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.08 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 96.06 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.02 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 96.02 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.99 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 95.95 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.88 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.86 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.81 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 95.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.67 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.58 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.42 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 95.35 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.28 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.27 | |
| PLN02789 | 320 | farnesyltranstransferase | 95.26 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 95.14 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 95.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 94.98 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 94.98 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.95 | |
| PLN02789 | 320 | farnesyltranstransferase | 94.95 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 94.88 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 94.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 94.77 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.74 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 94.74 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 94.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 94.49 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.44 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.33 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.27 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 94.22 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.08 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 93.69 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 93.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 93.45 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 93.44 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 93.34 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 93.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.25 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 93.15 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 92.88 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 92.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 92.72 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.61 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 92.4 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.34 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 92.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 91.71 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 91.49 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 90.97 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 90.9 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.77 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.52 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 90.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 90.38 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 90.26 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 90.05 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.96 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 89.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.76 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 89.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 89.63 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.62 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 89.42 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.39 | |
| PF11663 | 140 | Toxin_YhaV: Toxin with endonuclease activity YhaV; | 89.32 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 89.23 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.2 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 88.94 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.84 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.62 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 88.56 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 88.48 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.25 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.21 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 88.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 87.71 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 87.53 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 87.5 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 87.46 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 87.37 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 87.32 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 87.27 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 87.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 87.02 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 86.63 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.35 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 84.75 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 84.03 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.99 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.5 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 82.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.76 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 82.57 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.53 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 82.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 81.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 81.04 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 80.87 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 80.43 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.41 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.17 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 80.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.01 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=293.36 Aligned_cols=197 Identities=22% Similarity=0.398 Sum_probs=169.1
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCC-----------------------------------CcHHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-----------------------------------NSRFLISRLL 46 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-----------------------------------~~~~~~~~ll 46 (219)
||.++||++|.+|++.|++++|.++|++|.+.|+. ||..+||+||
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 67778888888888888888888888887665554 4555668889
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHH
Q 041894 47 FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGE 126 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 126 (219)
++|+++|++++|.++|++|+.+ |+++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|++.|+++.|.
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH
Q 041894 127 SVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 127 ~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~ 206 (219)
++|+.|.+.|+.||..+||+||++|++.|++ ++|+++|++|.++| +++||+||.+|++.|+
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~------------------~~A~~vf~~m~~~d-~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRM------------------EDARNVFDRMPRKN-LISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCH------------------HHHHHHHHhCCCCC-eeeHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999 66666666666666 6666666666666652
Q ss_pred ---------hHHHcCCCCCCc
Q 041894 207 ---------RVVSAGHDADLD 218 (219)
Q Consensus 207 ---------~m~~~g~~pd~~ 218 (219)
+|.+.|+.||.+
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHH
Confidence 466666666654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=296.30 Aligned_cols=216 Identities=13% Similarity=0.169 Sum_probs=172.6
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC------CCCChhhHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK------TPAPPVAWK 75 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~ 75 (219)
||..||+++|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .| |.++||
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyn 583 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVG 583 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHH
Confidence 77788888888888888888888888888878888888888888888888888888888887774 46 778888
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g 155 (219)
++|.+|++.|++++|.++|++|.+.|+.|+..+|+++|++|++.|++++|..+|+.|.+.|+.||..+|++||++|++.|
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CchhH--HHHH---------------hhhhccCCcchhhHHHHhhcCC----CCCCeeehhHHHHHHhhhhH--------
Q 041894 156 NMDMH--IYDR---------------FQGFGFNGGREASVHEVLDKIP----ERNGNVELSSGLAGCNKFEK-------- 206 (219)
Q Consensus 156 ~~~~~--~~~~---------------~~~~~~~~g~~~~a~~l~~~m~----~~~~~~~~n~ll~~~~~~~~-------- 206 (219)
+++.+ +|+. +...+|+.|++++|.++|++|. .+| +++||+||.+|++.|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88766 3333 4444578899999999999885 567 8889999999988884
Q ss_pred -hHHHcCCCCCCcC
Q 041894 207 -RVVSAGHDADLDA 219 (219)
Q Consensus 207 -~m~~~g~~pd~~~ 219 (219)
+|.+.|+.||..|
T Consensus 743 ~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 743 SEMKRLGLCPNTIT 756 (1060)
T ss_pred HHHHHcCCCCCHHH
Confidence 6888888888653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=294.50 Aligned_cols=216 Identities=21% Similarity=0.309 Sum_probs=198.1
Q ss_pred CCChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHH
Q 041894 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80 (219)
Q Consensus 1 ~P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~ 80 (219)
.||..||+++|.+|++.|+.+.|.++|..|.+.|+.||..+||+||.+|++.|++++|.++|++|+.| |.++||++|.+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~~s~n~li~~ 363 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISG 363 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CeeeHHHHHHH
Confidence 48888888888888888888888888888888999999999999999999999999999999999999 99999999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|+.|.+.|+.|+..+||+||++|++.|+++.|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred --HHHHhh------------------------------------------------------------------------
Q 041894 161 --IYDRFQ------------------------------------------------------------------------ 166 (219)
Q Consensus 161 --~~~~~~------------------------------------------------------------------------ 166 (219)
+|+.+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 444311
Q ss_pred --------hhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH---------hHHHcCCCCCCcC
Q 041894 167 --------GFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK---------RVVSAGHDADLDA 219 (219)
Q Consensus 167 --------~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~---------~m~~~g~~pd~~~ 219 (219)
..++++|++++|.++|++| .+| +++||+||.+|++.|+ +|.+.|+.||.+|
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d-~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-EKD-VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-CCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 1135688888888899888 788 9999999999999984 7999999999876
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=292.99 Aligned_cols=215 Identities=15% Similarity=0.136 Sum_probs=184.7
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSI 77 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~l 77 (219)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .| |.++||++
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P-dvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA-NVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999997 57 88999999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHH--hCCCccHHHHHHHHHHHHhcC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR--LGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~y~~~g 155 (219)
|++|++.|++++|.++|++|.+.|+.||..||+++|++|++.|+++.|.++|++|.+ .|+.||..+|++||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999876 678899999999999999999
Q ss_pred CchhH--HHHHh---------------hhhccCCcchhhHHHHhhcCCC----CCCeeehhHHHHHHhhhhH--------
Q 041894 156 NMDMH--IYDRF---------------QGFGFNGGREASVHEVLDKIPE----RNGNVELSSGLAGCNKFEK-------- 206 (219)
Q Consensus 156 ~~~~~--~~~~~---------------~~~~~~~g~~~~a~~l~~~m~~----~~~~~~~n~ll~~~~~~~~-------- 206 (219)
++++| +|+.+ ...+|+.|++++|.++|++|.+ +| ..+|+++|.+|++.|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 98877 45443 3335688888888888888884 46 7788888888888873
Q ss_pred -hHHHcCCCCCCc
Q 041894 207 -RVVSAGHDADLD 218 (219)
Q Consensus 207 -~m~~~g~~pd~~ 218 (219)
+|.+.|++||..
T Consensus 673 ~eM~k~G~~pd~~ 685 (1060)
T PLN03218 673 QDARKQGIKLGTV 685 (1060)
T ss_pred HHHHHcCCCCCHH
Confidence 677778888754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=291.09 Aligned_cols=198 Identities=20% Similarity=0.322 Sum_probs=170.6
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~ 81 (219)
||.+||+++|++|++.++++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|+.| |+++||++|.+|
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~li~~~ 263 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGY 263 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHHHHHH
Confidence 5555666666666555555556666666666666666777788999999999999999999999999 999999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|++
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~---- 339 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW---- 339 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH---------hHHHcCCCCCCcC
Q 041894 162 YDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK---------RVVSAGHDADLDA 219 (219)
Q Consensus 162 ~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~---------~m~~~g~~pd~~~ 219 (219)
++|+++|++|.++| +++||+||.+|++.|+ +|.+.|+.||..|
T Consensus 340 --------------~~A~~vf~~m~~~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t 391 (857)
T PLN03077 340 --------------GEAEKVFSRMETKD-AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391 (857)
T ss_pred --------------HHHHHHHhhCCCCC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee
Confidence 77888888887777 7788888888877773 5777777777654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=281.44 Aligned_cols=215 Identities=16% Similarity=0.270 Sum_probs=188.4
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~ 81 (219)
||..||+++|.+|++.++++.+.++|..|.+.|+.||..+||.||.+|++.|+++.|.++|++|+.| |.++||++|.+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~ 199 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGL 199 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH- 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~- 160 (219)
++.|++++|+++|++|.+.|+.||..||++++.+|++.|..+.+.+++..+.+.|+.||..+||+||++|++.|++++|
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999655
Q ss_pred -HH-----------HHhhhhccCCcchhhHHHHhhcCC----CCCCeeehhHHHHHHhhhhH---------hHHHcCCCC
Q 041894 161 -IY-----------DRFQGFGFNGGREASVHEVLDKIP----ERNGNVELSSGLAGCNKFEK---------RVVSAGHDA 215 (219)
Q Consensus 161 -~~-----------~~~~~~~~~~g~~~~a~~l~~~m~----~~~~~~~~n~ll~~~~~~~~---------~m~~~g~~p 215 (219)
+| ..|...++++|+.++|.++|++|. .+| ..||+++|.+|++.|+ .|.+.|+.|
T Consensus 280 ~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 23 233344456666666666666664 345 5666666666666664 355666666
Q ss_pred CCc
Q 041894 216 DLD 218 (219)
Q Consensus 216 d~~ 218 (219)
|..
T Consensus 359 d~~ 361 (697)
T PLN03081 359 DIV 361 (697)
T ss_pred Cee
Confidence 653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-16 Score=93.23 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=44.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
+|+++||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 18899999999999999999999999999999999999999999999875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.6e-15 Score=88.16 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=48.9
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN 51 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~ 51 (219)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999986
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=111.78 Aligned_cols=210 Identities=10% Similarity=0.004 Sum_probs=158.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCC-----hhhHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAP-----PVAWKSI 77 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~-----~~~~~~l 77 (219)
.++..+...+.+.|+++.|..+|+.+.+.. +++..+++.+...|.+.|++++|.+.++.+.. |.+ ...|..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 467788888889999999999999988753 45677888999999999999999999988752 201 1235567
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
...+.+.|++++|..+|+++.+. .|+ ...+..+...+.+.|+++.|.++++.+.+.+......+++.+..+|++.|+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 77788889999999999988764 344 446777778888999999999999988776543345678888899999999
Q ss_pred chhHH--HHH-------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhh---hh---------Hh
Q 041894 157 MDMHI--YDR-------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNK---FE---------KR 207 (219)
Q Consensus 157 ~~~~~--~~~-------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~---~~---------~~ 207 (219)
++.++ ++. +...+.+.|+.++|.++|+++.+ |+ ..+++.++..+.. .| +.
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC-HHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 98772 333 23345678899999999997663 56 6788888888764 22 25
Q ss_pred HHHcCCCCCCc
Q 041894 208 VVSAGHDADLD 218 (219)
Q Consensus 208 m~~~g~~pd~~ 218 (219)
|.+.+++||..
T Consensus 344 ~~~~~~~~~p~ 354 (389)
T PRK11788 344 LVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhCCCC
Confidence 67777777753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=102.81 Aligned_cols=202 Identities=11% Similarity=0.003 Sum_probs=160.4
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS---RFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~l 77 (219)
+..++..+...+.+.|+++.|..+++.+.+.+-.++ ...+..+...|.+.|++++|..+|+++.. |.+..+++.+
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 147 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQL 147 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 346788899999999999999999999988653322 35688899999999999999999999863 2167899999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCc----ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDH----NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
+..+.+.|++++|.+.|+.+.+.+-.++. ..+..+...+.+.|+++.|...++.+.+.. +.+...+..+...|.+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHH
Confidence 99999999999999999999876533222 235567778889999999999999988765 3346678888899999
Q ss_pred cCCchhH--HHHH---------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 154 SQNMDMH--IYDR---------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 154 ~g~~~~~--~~~~---------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|++++| .|+. +...+++.|+.++|.++++++.+ ++ ...++.+...+.+.|+
T Consensus 227 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 227 QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG-ADLLLALAQLLEEQEG 297 (389)
T ss_pred CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHhCC
Confidence 9999887 2333 22334688999999999998764 45 5556778888888774
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.5e-10 Score=103.22 Aligned_cols=199 Identities=8% Similarity=-0.035 Sum_probs=117.5
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+...+.+.|+++.|...|..+.+.. +.+...+..+...|.+.|++++|..+|+.+. .|.+..+|..+...+
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455555555666666666666666655443 2244455555566666666666666665543 221455666666666
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
...|++++|.++++.+.+.. +++...+..+...+.+.|+++.|...+..+.+.+ |+..++..+..+|.+.|+++++.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666665543 3344556666666667777777777777666654 33356666677777777776662
Q ss_pred --HHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 162 --YDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 --~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
++. +...+.+.|+.++|.+.|+++.+ +++...++.+...+.+.|+
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 222 22334567778888888877653 2215566777666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-10 Score=102.73 Aligned_cols=196 Identities=10% Similarity=0.026 Sum_probs=109.5
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
++..+...+.+.|+++.|..+++.+.+.. +++...+..+-..+.+.|++++|...|..+. .| +..++..+...+.+
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-SSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHH
Confidence 34444444444444444444444444433 2234444444455555555555555555442 23 33445555555555
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--H
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--I 161 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~ 161 (219)
.|++++|.+.+..+.+.. +.+...+..+...|...|+.+.|...++.+.+.. +.+..+++.+...|.+.|+ ..+ .
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 566666665555555432 2344455566666666666666666666666554 3455666666666666666 333 1
Q ss_pred HHH--------------hhhhccCCcchhhHHHHhhcCCCC---CCeeehhHHHHHHhhhhHh
Q 041894 162 YDR--------------FQGFGFNGGREASVHEVLDKIPER---NGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 162 ~~~--------------~~~~~~~~g~~~~a~~l~~~m~~~---~~~~~~n~ll~~~~~~~~~ 207 (219)
++. +...+++.|+.++|.++|+++.+. + ..++..+...|.+.|+.
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA-AAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCH
Confidence 221 223345778888888888877743 4 67788888888888754
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=94.08 Aligned_cols=181 Identities=15% Similarity=0.072 Sum_probs=137.5
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH--HhhcCCHH-------------------------H
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI--YNNFNLVH-------------------------D 57 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~--~~~~g~~~-------------------------~ 57 (219)
.+=|++++-- ..|..+++.-+|+.|++.|...+...--.|+.. |..+.++- -
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 3445555443 567888899999999999988777766666553 33332221 1
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCC
Q 041894 58 SLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 58 A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 137 (219)
|.-+|+ ...+ ...+|.++|.++++-...+.|.++|++-.....+.+..+||.+|.+-+-..+ ..++.+|.+..+
T Consensus 196 AdL~~E-~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 196 ADLLFE-TLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred HHHHHh-hcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 222222 2223 5688999999999999999999999999988889999999999988765443 789999999999
Q ss_pred CccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC----CCCeeehhHHHHHHhhhhHh
Q 041894 138 DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE----RNGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 138 ~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~----~~~~~~~n~ll~~~~~~~~~ 207 (219)
.||..|+|+++.+.++.|+++.+. ..|.+++.+|++ |. .-+|.-+|..+++.++.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar--------------~aalqil~EmKeiGVePs-LsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDAR--------------KAALQILGEMKEIGVEPS-LSSYHLIIKNFKRESDP 328 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHH--------------HHHHHHHHHHHHhCCCcc-hhhHHHHHHHhcccCCc
Confidence 999999999999999999996555 666777788884 45 56788899888888753
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-10 Score=63.20 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=32.4
Q ss_pred hCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 135 ~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.|+.||..|||+||++||+.|++ ++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~------------------~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRV------------------DEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCH------------------HHHHHHHHhCc
Confidence 48999999999999999999999 99999999995
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-10 Score=62.44 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=27.2
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 33 TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 33 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
.|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888774
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=89.34 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA---PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 112 (219)
+-+..+|++||.+.|+....+.|.+++++-...+ +..+||.+|.+-.-.-. .++..+|.+..+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 5577899999999999999999999999876321 67889999976554322 6788999999999999999999
Q ss_pred HHHHhcccChhhHH----HHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 113 LKSCTLLVDFRFGE----SVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 113 l~~~~~~g~~~~a~----~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
+++.++.|+++.|+ +++.+|++.|++|...+|.-+|..++|.++..
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 99999999888665 56788999999999999999999999999984
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-07 Score=71.31 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=139.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..+..+-..+...|+++.|...+++..+.. +.+...+..+-..|...|++++|.+.++... .|.+...+..+-..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 456667778888999999999999988764 4456778888889999999999999998764 2325677888889999
Q ss_pred hcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
..|++++|.+.|.+..+....| ....+..+-..+...|+++.|...+....+.. +.+...+..+...+...|++
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~---- 185 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY---- 185 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH----
Confidence 9999999999999987653223 33466667778889999999999999887764 23466788888999999999
Q ss_pred HHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 162 YDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 ~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
++|.+++++... ++....+..+...+...|+
T Consensus 186 --------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 186 --------------KDARAYLERYQQTYNQTAESLWLGIRIARALGD 218 (234)
T ss_pred --------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 999988887653 2214455555566655553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.2e-09 Score=93.20 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=33.6
Q ss_pred CCcchhhHHHHhhcCCCCCC---eeehhHHHHH------HhhhhHhHHHcCCCCCCcC
Q 041894 171 NGGREASVHEVLDKIPERNG---NVELSSGLAG------CNKFEKRVVSAGHDADLDA 219 (219)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~~~---~~~~n~ll~~------~~~~~~~m~~~g~~pd~~~ 219 (219)
-+|+++.|..++.+|+++.. ..-|..+|-| +.-.-+.|.+.||+||..|
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcch
Confidence 35555999999999998742 2235555555 1222257999999999875
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=80.82 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=77.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+..+...+..+.+.++++.+..+++.+.+.. .+++...|..+-..+.+.|+.++|++.+++.- .|.|....+.++..
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445555566666666666666666655432 34455566666666666666666666665543 33245556666666
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+...|+.+++.+++....+.. +.|...+..+-.+|...|+.+.|...++...+.. +.|..+...+-+++...|+.
T Consensus 190 li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~--- 264 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRK--- 264 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------
T ss_pred HHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccc---
Confidence 666666666666665554432 3444555666666666666666666666655543 33555556666666666666
Q ss_pred HHHHhhhhccCCcchhhHHHHhhcC
Q 041894 161 IYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 161 ~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
++|.++..+.
T Consensus 265 ---------------~~A~~~~~~~ 274 (280)
T PF13429_consen 265 ---------------DEALRLRRQA 274 (280)
T ss_dssp -------------------------
T ss_pred ---------------cccccccccc
Confidence 8888887653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-08 Score=88.52 Aligned_cols=151 Identities=12% Similarity=0.005 Sum_probs=120.2
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCC------------------------CCcHHHHHHHHHHHhhcCCHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE------------------------PNSRFLISRLLFIYNNFNLVHD 57 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~------------------------~~~~~~~~~ll~~~~~~g~~~~ 57 (219)
||.+||.++|.-||..|+.+.|. +|..|.-.++ .|...||..|+.+|.+.||+..
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchHH
Confidence 88999999999999999999988 7777763321 3667789999999999887533
Q ss_pred ---HHHHHHhc---------------------------------------------------------------------
Q 041894 58 ---SLCLLDTL--------------------------------------------------------------------- 65 (219)
Q Consensus 58 ---A~~~~~~m--------------------------------------------------------------------- 65 (219)
.++-+..+
T Consensus 102 fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqn 181 (1088)
T KOG4318|consen 102 FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQN 181 (1088)
T ss_pred HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHh
Confidence 22211111
Q ss_pred -----------------C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHH
Q 041894 66 -----------------K-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 66 -----------------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
. .+ ++.+|.+++++-.-+|+.+.|..++.+|.+.|+..+...|..+|-+ .++...++.
T Consensus 182 v~~ntpvekLl~~cksl~e~~-~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~ 257 (1088)
T KOG4318|consen 182 VVDNTPVEKLLNMCKSLVEAP-TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEF 257 (1088)
T ss_pred ccCCchHHHHHHHHHHhhcCC-ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHH
Confidence 0 13 7788888999888899999999999999999999998888888877 788888888
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 128 ~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+...|...|+.|+..|+.--+......|..
T Consensus 258 vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 258 VLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 899999999999999998888777776665
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=56.10 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 106 (219)
++||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999974
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-06 Score=68.43 Aligned_cols=162 Identities=7% Similarity=0.016 Sum_probs=130.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC----CCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT----PAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~li~ 79 (219)
...+..+-..+...|+++.|...+.+..+.. +.+...+..+-..+...|++++|...++.... +.....+..+-.
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 4567777788899999999999999998875 34567788888899999999999999988742 213456777888
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
.+...|++++|...|.+..+.. +.+...+..+...+...|+++.|...++...+. ...+...+..+...+...|+.
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 219 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDV-- 219 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhH--
Confidence 8999999999999999977642 223457778888999999999999999998776 345667777888889999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++|.++.+.+.
T Consensus 220 ----------------~~a~~~~~~~~ 230 (234)
T TIGR02521 220 ----------------AAAQRYGAQLQ 230 (234)
T ss_pred ----------------HHHHHHHHHHH
Confidence 88888877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-08 Score=54.19 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP 104 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 104 (219)
.+||++|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888887
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-06 Score=78.33 Aligned_cols=198 Identities=6% Similarity=-0.062 Sum_probs=121.2
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
+..+..++...|+++.|...++++.+.. +.+...+..+-..+.+.|+.++|...++... .|.+...+..+...+...
T Consensus 79 l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 79 LRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM 157 (656)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3444455666778888888888777654 3345566666777777888888887777654 342566777777778888
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH--H
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI--Y 162 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~--~ 162 (219)
|++++|...++.+... .|+.......+..+...|++++|..++..+.+....++...+..+..++.+.|++++++ |
T Consensus 158 g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 158 DKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred CChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888877766543 23322222222346667788888777777665543344444455566777777776552 2
Q ss_pred HH--------------hhhhccCCcchhh----HHHHhhcCCC--CCCeeehhHHHHHHhhhhHh
Q 041894 163 DR--------------FQGFGFNGGREAS----VHEVLDKIPE--RNGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 163 ~~--------------~~~~~~~~g~~~~----a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~~ 207 (219)
+. +...+.+.|+.++ |...|++... |+....+..+-..+.+.|+.
T Consensus 236 ~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 236 ESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 22 2222345566564 6777777663 33244566666666666643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-06 Score=77.21 Aligned_cols=201 Identities=8% Similarity=-0.018 Sum_probs=149.8
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...+..+-..+.+.|+++.|...++++.+.. +.+...+..+...+...|+.++|...++.+. .|.+...+..+ ..+
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l 187 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSF 187 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHH
Confidence 4556667778889999999999999998763 4456788889999999999999999998763 33134444443 347
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh--
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM-- 159 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~-- 159 (219)
...|++++|...++.+.+..-.++...+..+..++...|++++|...+....+.. ..+...+..+-..|.+.|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhH
Confidence 8889999999999998765423344455556778889999999999999988765 3457778888899999999875
Q ss_pred --H--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhHh
Q 041894 160 --H--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 160 --~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~~ 207 (219)
+ .|+. +...+.+.|+.++|...+++... +++...+..+-..|.+.|+.
T Consensus 267 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 267 LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3 3433 33334578999999999998764 33245566677777777753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=77.15 Aligned_cols=191 Identities=13% Similarity=0.023 Sum_probs=73.2
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
-.-..++++.|...++++.+.+-. +...+..++.. ...+++++|.+++...- .+ +...+..++..+.+.++++++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~ 129 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEA 129 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred cccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHH
Confidence 344466777777777777766533 45556666666 57777777777765432 33 556677777777777777777
Q ss_pred HHHHHHhHhC-CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--H---H--
Q 041894 91 LTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--I---Y-- 162 (219)
Q Consensus 91 ~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~---~-- 162 (219)
.++++..... ..+++...|..+-..+.+.|+.+.|...++...+.. +.|....+.++..+...|+.+.+ + |
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 130 EELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 7777775543 234555666667777777777777777777776664 22455677777777777777543 1 1
Q ss_pred ---------HHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhHh
Q 041894 163 ---------DRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 163 ---------~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~~ 207 (219)
..+...+...|+.++|..+|++... ++++.....+-.++.+.|+.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence 1122222355666888888887553 32266666777777777753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.7e-06 Score=74.50 Aligned_cols=167 Identities=8% Similarity=-0.021 Sum_probs=94.4
Q ss_pred cCChhHHHHHHHHHHHcC-CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTL-EPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g-~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~ 92 (219)
.++++.|...|+...+.+ ..| ....|+.+-..+...|++++|...|+... .|.+..+|..+-..+...|++++|..
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 355666666666666554 223 33445555556666666666666666543 23134455566666666666666666
Q ss_pred HHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH-----
Q 041894 93 CFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR----- 164 (219)
Q Consensus 93 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~----- 164 (219)
.|++..+. .| +...|..+-..+...|++++|...++...+.. +.+...+..+-.++.+.|+++++ .|+.
T Consensus 387 ~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 387 DFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 66665443 23 23455555566666666666666666655543 22344555555666666666655 2222
Q ss_pred ---------hhhhccCCcchhhHHHHhhcCC
Q 041894 165 ---------FQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 165 ---------~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+...+...|++++|.+.|++..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1112235666699999988744
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-05 Score=72.48 Aligned_cols=139 Identities=9% Similarity=-0.090 Sum_probs=106.3
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTC 93 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 93 (219)
..++++.|...+++..+.. +-+...+..+-..+...|++++|...|++.. .|.+..+|..+-..+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4456889999999988775 4467777777778889999999999998864 442567888888999999999999999
Q ss_pred HHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 94 FVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 94 ~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|++..+. .|+.. .+..++..+...|++++|...+....+...+.+...+..+-.+|...|+.
T Consensus 395 ~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 395 INECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 9998764 45532 23334445667899999999988876654222444567777888899999
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-07 Score=50.09 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 102 (219)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4677888888888888888888887777664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-05 Score=73.13 Aligned_cols=165 Identities=8% Similarity=-0.108 Sum_probs=107.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
.|+.+-..+...|+++.|...+++.++.. +.+...|..+-..+...|++++|...|+... .|.+..+|..+-..+..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444445566777777777777776553 2234566666667777777777777776543 22156677777777777
Q ss_pred cCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHH
Q 041894 84 NGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
.|++++|...|++..+. .|+ ...+..+-..+.+.|+++.|...++...+.. +.+...|+.+-.+|...|+++.++
T Consensus 412 ~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~- 487 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAI- 487 (615)
T ss_pred cCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH-
Confidence 77888887777776553 343 3455556666677777777777777766543 234566777777777777776666
Q ss_pred HHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 163 DRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 163 ~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
+.-.+.++.-+..
T Consensus 488 -------------~~~~~Al~l~p~~ 500 (615)
T TIGR00990 488 -------------EKFDTAIELEKET 500 (615)
T ss_pred -------------HHHHHHHhcCCcc
Confidence 6666666655543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-07 Score=51.13 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=31.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCC
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN 37 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~ 37 (219)
..+|+++|.+|++.|+++.|.++|+.|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=75.72 Aligned_cols=193 Identities=8% Similarity=-0.009 Sum_probs=101.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
.|..+-.++.. ++...|...+.+..+. .|+......+...+.+.|++++|...|+.+. .| +...+..+...+.+
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p-~~~a~~~la~all~ 554 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM-SNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CcHHHHHHHHHHHH
Confidence 33333333333 5666666655555433 2444332222333346677777777776543 23 33445555556666
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH-
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI- 161 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~- 161 (219)
.|++++|...|+...+.. |+.. .+..+.....+.|++++|...+....+.. |+...|..+-.++.+.|+.++++
T Consensus 555 ~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred CCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 677777777776665442 3322 22222223334466777766666665543 34556666666666667666552
Q ss_pred -HHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 162 -YDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 -~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
|+. +...+.+.|+.++|.+.|++..+ |++...+..+-.+|.+.|+
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 222 22234456666777777776542 3224556666666666553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-05 Score=74.45 Aligned_cols=180 Identities=9% Similarity=-0.080 Sum_probs=113.6
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIR 79 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~ 79 (219)
|+......+..++.+.|+++.|...|.++... .|+...+..+-..+.+.|+.++|...++.... |.+...+..+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~ 584 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHA 584 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 44333333334445778888888888876544 33344455556677778888888888876653 202222222333
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
.....|++++|...|++..+. .|+...|..+-..+.+.|+.++|...+....+.. +.+...++.+-.++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 344458888888888776643 4666677777777778888888888887776664 2345566666677777888776
Q ss_pred H--HHHH--------------hhhhccCCcchhhHHHHhhcCC
Q 041894 160 H--IYDR--------------FQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 160 ~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+ .|+. +...+.+.|+.++|+..|++..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6 3433 2222346777788888888765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-07 Score=49.82 Aligned_cols=35 Identities=6% Similarity=0.126 Sum_probs=33.1
Q ss_pred ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccH
Q 041894 107 NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141 (219)
Q Consensus 107 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 141 (219)
.+|+++|++|++.|++++|.++|..|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.5e-05 Score=65.56 Aligned_cols=169 Identities=7% Similarity=-0.053 Sum_probs=93.0
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC------------------------
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP------------------------ 68 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------------------------ 68 (219)
.+...|+++.|...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777766655 335566666677777777777777666655421
Q ss_pred --------------------CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHH
Q 041894 69 --------------------APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128 (219)
Q Consensus 69 --------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 128 (219)
.+.....++...+...|+.++|.+++++..+. .||. --.++.+....++.+.+.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHH
Confidence 02333344444445555555555555444431 2222 11122222333444445444
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 129 ~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.+...+.. +-|.....++=..+.+.|++ ++|++.|+...+ |+ ...|-.+-..+.+.|+
T Consensus 317 ~e~~lk~~-P~~~~l~l~lgrl~~~~~~~------------------~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 317 LRQQIKQH-GDTPLLWSTLGQLLMKHGEW------------------QEASLAFRAALKQRPD-AYDYAWLADALDRLHK 376 (398)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCH------------------HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCC
Confidence 44444332 12333344444555555555 999999998774 45 5667777778877775
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00011 Score=71.31 Aligned_cols=172 Identities=12% Similarity=0.053 Sum_probs=107.1
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHH-----------
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWK----------- 75 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~----------- 75 (219)
..-..+...|+++.|...|++..+.. +-+...+..+-..|.+.|++++|...|+... .|.+...+-
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC
Confidence 33444555666666666666665543 2244455555556666666666666665542 221222111
Q ss_pred ---------------------------------HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccCh
Q 041894 76 ---------------------------------SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122 (219)
Q Consensus 76 ---------------------------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 122 (219)
.+.+.+...|+.++|..+++. .+++...+..+-..+.+.|+.
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCH
Confidence 223445555666666666541 233455667777888888999
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHHhh--------------hhccCCcchhhHHHHhhcCC
Q 041894 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQ--------------GFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 123 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~~~--------------~~~~~~g~~~~a~~l~~~m~ 186 (219)
+.|...++...+.. +.+...+..+...|...|+++.| .++.+. ....+.|+.++|.++|++..
T Consensus 620 ~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 620 AAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999988887765 33677888888889999998877 344422 12236888899999999876
Q ss_pred C
Q 041894 187 E 187 (219)
Q Consensus 187 ~ 187 (219)
.
T Consensus 699 ~ 699 (1157)
T PRK11447 699 P 699 (1157)
T ss_pred h
Confidence 4
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.7e-05 Score=69.43 Aligned_cols=174 Identities=7% Similarity=-0.045 Sum_probs=122.7
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhh-HHHH--HHHHHh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA-WKSI--IRCCTQ 83 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~l--i~~~~~ 83 (219)
|...|. .++.|+++.|...|.+..+..-.-....+ .++..+...|+.++|+..++....| +... +..+ ...+..
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 333443 35889999999999999876422112344 8888889999999999999998765 4333 3333 457888
Q ss_pred cCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHH
Q 041894 84 NGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
.|++++|.++|+++.+. .|+ ...+..+...+.+.++.++|.+.++.+.+. .|+...+-.++..+...++.
T Consensus 115 ~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~----- 185 (822)
T PRK14574 115 EKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN----- 185 (822)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH-----
Confidence 89999999999999875 343 456667788889999999999999988765 46666664454444445555
Q ss_pred HHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhh
Q 041894 163 DRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 163 ~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~ 205 (219)
.+|.+.++++.+ |++...+.-++.+..+.|
T Consensus 186 -------------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 186 -------------YDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred -------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 568888887774 332444566666666665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.3e-05 Score=67.44 Aligned_cols=151 Identities=11% Similarity=-0.040 Sum_probs=109.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..++..+-..+...|+++.|...|++..+.. +.+...+..+-..+...|++++|...++... .|.+...+..+...+
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 4556666566778899999999999999876 4456678888889999999999999999865 341333444455557
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
...|++++|...+++..+.. .|+.. .+..+-.++...|+.++|.+.+..+.... ..+....+.|-..|++.|+-
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 491 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNSER 491 (553)
T ss_pred HhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccHHH
Confidence 77899999999999976543 45443 35566677789999999999998865442 22344445555667776643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-05 Score=55.11 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHhccc--------ChhhHHHHHHHHHHhCCCccHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLV--------DFRFGESVHACIIRLGVDLDLYT 143 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~ 143 (219)
|-..-|..+...+++.....+|+.++++|+ .|+..+|+.+|++-++.. ..-....+++.|..++++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777777999999999999999999 899999999999998663 23456778999999999999999
Q ss_pred HHHHHHHHHh
Q 041894 144 NNALMNMYAQ 153 (219)
Q Consensus 144 ~~~ll~~y~~ 153 (219)
|+.+|..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00016 Score=70.26 Aligned_cols=58 Identities=10% Similarity=-0.034 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
+..+-..+...|+.++|...|++.. .|.+...+..+...|.+.|++++|...|++..+
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555566677777777777776653 332445566666777777777777777777654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.4e-06 Score=45.35 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=29.2
Q ss_pred ccHHHHHHHHhcccChhhHHHHHHHHHHhCC
Q 041894 107 NVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 107 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 137 (219)
+||+++|++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999999875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=68.18 Aligned_cols=147 Identities=6% Similarity=-0.086 Sum_probs=110.0
Q ss_pred hCccccCChhHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCC----hhhHHHHHHHHHhc
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAP----PVAWKSIIRCCTQN 84 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~~li~~~~~~ 84 (219)
.++...+++++|...|+.+.+.+-. |+.. -..+-..|...|++++|+..|+.+.. |.+ ...+..+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3456779999999999999988632 3321 22246689999999999999998742 201 23456677788999
Q ss_pred CChhHHHHHHHHhHhCC-----------CCCCc---ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 85 GLLVESLTCFVRMIGSG-----------VYPDH---NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g-----------~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
|++++|..+++.+.+.. -.|+. ..+..+...+...|++++|..+++.+.... +.+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 99999999999987642 12332 134556678889999999999999987765 4467889999999
Q ss_pred HHhcCCchhH
Q 041894 151 YAQSQNMDMH 160 (219)
Q Consensus 151 y~~~g~~~~~ 160 (219)
+...|+++.+
T Consensus 403 ~~~~g~~~~A 412 (765)
T PRK10049 403 LQARGWPRAA 412 (765)
T ss_pred HHhcCCHHHH
Confidence 9999999555
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.15 E-value=8e-05 Score=64.03 Aligned_cols=122 Identities=13% Similarity=0.153 Sum_probs=103.0
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCC----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc
Q 041894 33 TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-TPA----PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN 107 (219)
Q Consensus 33 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 107 (219)
++...+......+++......+++.+..++-.++ +|. -..|..++|+.|.+.|.+++++++++.=..-|+=||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4456688888999999999999999999988876 220 12466799999999999999999999988889999999
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
||+.||+.+.+.|++..|.++...|...+...+..|+.--+.++.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988887777767777777667666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00015 Score=62.31 Aligned_cols=143 Identities=12% Similarity=0.020 Sum_probs=63.5
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLIS--RLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
.+.|+++.+...+.++.+. .|+...+. ..-..+...|+.+.|...++... .|.+......+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555555432 23322221 22334555555555555555543 222344555555555555555555
Q ss_pred HHHHHHhHhCCCCCCc-------ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 91 LTCFVRMIGSGVYPDH-------NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
.+++..+.+.+..++. ..|..++..-....+.+...++++.+.+. .+.+.....++..++.+.|+.+.+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence 5555555554432211 12222222222222333333333333221 123444555555666666666444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00058 Score=58.92 Aligned_cols=116 Identities=6% Similarity=-0.068 Sum_probs=62.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH-HHHHHHh--cccChhhHHHHHHHHHHhC-CCccHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP-SVLKSCT--LLVDFRFGESVHACIIRLG-VDLDLYTNN 145 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~--~~g~~~~a~~~~~~m~~~g-~~~~~~~~~ 145 (219)
+...+-.+...+...|+.++|.+++++..+. .||..... .++..+. ..++.+.+.+.++...+.. -.|+.....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 4455555666666666666666666665543 23332110 1222222 2344445555554443332 111113444
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc--CC--CCCCeeehhHHHHHHhhhhH
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK--IP--ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~--m~--~~~~~~~~n~ll~~~~~~~~ 206 (219)
++=..+.+.|++ ++|++.|+. .. .++ ...+..+-..+.+.|+
T Consensus 340 sLg~l~~~~~~~------------------~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~ 385 (409)
T TIGR00540 340 ALGQLLMKHGEF------------------IEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGD 385 (409)
T ss_pred HHHHHHHHcccH------------------HHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCC
Confidence 555556666666 999999993 42 456 6667788777777775
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00014 Score=62.07 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=102.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 120 (219)
...+|+..+...++++.|..+|+++.+. ++...-.+.+.+...++..+|.+++.+..+.. +-+......-.+.|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4566777778889999999999999977 77777788899999999999999999987541 224445555566688999
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+.+.|..+.+...+.. +.+..+|..|..+|.+.|++ ++|+-.+..++
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~------------------e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDF------------------ENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCH------------------HHHHHHHhcCc
Confidence 9999999999988864 34667999999999999999 88888888777
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00054 Score=63.84 Aligned_cols=156 Identities=10% Similarity=0.011 Sum_probs=124.3
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~ 87 (219)
.+......|+.+.|..++....... +.+...+..+-..+.+.|++++|..+|++.. .|.+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3445567899999999999987633 4456678999999999999999999999843 342677788899999999999
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhh
Q 041894 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQG 167 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~ 167 (219)
++|...+++..+. .|+...+..+-..+...|+.+.|...++...+... .+...+..+..++.+.|..
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~---------- 166 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS---------- 166 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh----------
Confidence 9999999998765 44432287888888999999999999999988763 3455566678888888888
Q ss_pred hccCCcchhhHHHHhhcCCC
Q 041894 168 FGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.+.+++...
T Consensus 167 --------e~Al~~l~~~~~ 178 (765)
T PRK10049 167 --------APALGAIDDANL 178 (765)
T ss_pred --------HHHHHHHHhCCC
Confidence 777777776554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.4e-05 Score=61.84 Aligned_cols=150 Identities=10% Similarity=-0.000 Sum_probs=101.5
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-Chh---hHHHHHHHHHhcCChh
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA-PPV---AWKSIIRCCTQNGLLV 88 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~---~~~~li~~~~~~g~~~ 88 (219)
.+...|+++.|.++... + .+.......+..|.+.++++.|.+.++.|++-. |.+ ...+++........++
T Consensus 111 i~~~~~~~~~AL~~l~~----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHK----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHCCCCHHHHHHCCCTT----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHcCCHHHHHHHHHc----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHH
Confidence 45567888888777653 2 356667778888899999999999999887431 322 2333444444445789
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhh
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~ 168 (219)
+|+.+|+++.+. ..++..+.+.+.-+....|++++|+.++.+..... +-|..+...++.+..-.|+..
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~---------- 252 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPT---------- 252 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TC----------
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCCh----------
Confidence 999999997654 56777888888888889999999999988765443 235556666777777777763
Q ss_pred ccCCcchhhHHHHhhcCCC
Q 041894 169 GFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~ 187 (219)
+.+.+++..++.
T Consensus 253 -------~~~~~~l~qL~~ 264 (290)
T PF04733_consen 253 -------EAAERYLSQLKQ 264 (290)
T ss_dssp -------HHHHHHHHHCHH
T ss_pred -------hHHHHHHHHHHH
Confidence 567778887773
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.2e-05 Score=58.47 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=34.6
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
+-+-|.+++++|..+|+.||..++..|++.|++.+..=
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 55678999999999999999999999999999988773
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00085 Score=53.11 Aligned_cols=164 Identities=10% Similarity=0.051 Sum_probs=115.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCC-CC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChh---hHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPV---AWKS 76 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~---~~~~ 76 (219)
...+-.....+.+.|+++.|...|+.+.+..- .| ....+..+-.+|.+.|++++|...++.+. .|.+.. ++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 34555666678889999999999999876541 11 12466777789999999999999999875 331222 3444
Q ss_pred HHHHHHhc--------CChhHHHHHHHHhHhCCCCCCcc-cHH-----------------HHHHHHhcccChhhHHHHHH
Q 041894 77 IIRCCTQN--------GLLVESLTCFVRMIGSGVYPDHN-VFP-----------------SVLKSCTLLVDFRFGESVHA 130 (219)
Q Consensus 77 li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-t~~-----------------~ll~~~~~~g~~~~a~~~~~ 130 (219)
+-.++... |++++|.+.|+...+. .|+.. .+. .+-..+.+.|+++.|...+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44444443 6789999999998764 34432 111 23455678899999999999
Q ss_pred HHHHhCC--CccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 131 CIIRLGV--DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 131 ~m~~~g~--~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
...+... ......+..+..+|.+.|++ ++|..+++.+..
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~------------------~~A~~~~~~l~~ 231 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLK------------------DLAQDAAAVLGA 231 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHh
Confidence 8876642 12356888999999999999 899888877653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00051 Score=59.29 Aligned_cols=88 Identities=14% Similarity=0.024 Sum_probs=38.4
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..+.|+.+.|.+.+.+..+..-.+....--+....+...|+.+.|...++.+. .|.+..++..+...+...|++++|.
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 33445555555555544332211111122222344444555555555554443 2213344445555555555555555
Q ss_pred HHHHHhHhCC
Q 041894 92 TCFVRMIGSG 101 (219)
Q Consensus 92 ~~~~~m~~~g 101 (219)
+.+..+.+.+
T Consensus 208 ~~l~~l~k~~ 217 (409)
T TIGR00540 208 DIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHcC
Confidence 5555555444
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00068 Score=63.26 Aligned_cols=150 Identities=9% Similarity=-0.032 Sum_probs=120.6
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC--------CChhhHHHHHHHH
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP--------APPVAWKSIIRCC 81 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~li~~~ 81 (219)
.|-++.+.+++.++.+.|+.|...+.+.-.++-..+-++|...+++++|+.++.++-.+ .+......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 34578888999999999999999997655668899999999999999999999987421 0233457899999
Q ss_pred HhcCChhHHHHHHHHhHhCC-----------CCCC--cc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 82 TQNGLLVESLTCFVRMIGSG-----------VYPD--HN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g-----------~~p~--~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
...+++++|..+++.+.+.- -.|| .. .+..+...+...|++++|++.++.+.... +-|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 99999999999999998631 0122 22 23446777889999999999999997765 5688899999
Q ss_pred HHHHHhcCCchhH
Q 041894 148 MNMYAQSQNMDMH 160 (219)
Q Consensus 148 l~~y~~~g~~~~~ 160 (219)
-+.+...|.+++|
T Consensus 457 A~v~~~Rg~p~~A 469 (822)
T PRK14574 457 ASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCHHHH
Confidence 9999999999443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.91 E-value=5e-05 Score=65.30 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=99.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC--CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
+.+....+++.+....+++++..++-..+.+ ....-..|..++++.|.+.|..+.+..++..=...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5678888999999888999999999998876 34444567789999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC---CCeeehhHHHHHHhhh
Q 041894 148 MNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER---NGNVELSSGLAGCNKF 204 (219)
Q Consensus 148 l~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~---~~~~~~n~ll~~~~~~ 204 (219)
|+.+.+.|++ ..|.++...|... ++..|+.-.+.+|.+-
T Consensus 145 md~fl~~~~~------------------~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNY------------------KSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccH------------------HHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999 9999999887743 2156666666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0002 Score=58.98 Aligned_cols=118 Identities=10% Similarity=-0.046 Sum_probs=91.4
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccCh
Q 041894 47 FIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDF 122 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~ 122 (219)
..+...|++++|++++..- . +.......++.|.+.++++.|.+.++.|.+. ..| .+..-+..++.. ...+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~-~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--G-SLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--T-CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHcc--C-cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence 4677789999999988765 4 6677888999999999999999999999864 233 455556665543 2368
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 123 RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 123 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
..|..+|+++... ..++..+.|.+..+....|++ ++|++++.+....+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~------------------~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHY------------------EEAEELLEEALEKD 231 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-H------------------HHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCH------------------HHHHHHHHHHHHhc
Confidence 9999999998654 568889999999999999999 99999999866543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00044 Score=56.92 Aligned_cols=126 Identities=9% Similarity=0.015 Sum_probs=94.2
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHH-HHHHHHHhcC
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWK-SIIRCCTQNG 85 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~-~li~~~~~~g 85 (219)
.+=++|.+.|.+.+|++.++.-.+. .|-+.||-.|-..|.+..++..|+.+|.+-- -| -.+||- -+-+-+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHHH
Confidence 4556788899999999998887766 4556677778889999999999999997643 35 334444 3456666678
Q ss_pred ChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC
Q 041894 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 138 (219)
+.++|.++|+...+.. +.+......+-..|.-.++.+.|...+..+.+.|+.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 8999999998876642 234445555566677778899999999999999875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0045 Score=51.11 Aligned_cols=188 Identities=9% Similarity=-0.028 Sum_probs=122.7
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
|...=..+.+.|+.+.|...|.+..+.. +.+...|+.+=..|...|++++|...|+... .|.+..+|..+-..+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4444445677899999999999888765 4467888888899999999999999998764 342567888888888899
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-HHH
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH-IYD 163 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~-~~~ 163 (219)
|++++|.+.|+...+. .|+..........+...++.++|...++..... ..|+...+ .+... ..|+.... .++
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~~~--~lg~~~~~~~~~ 219 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIVEF--YLGKISEETLME 219 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHHHH--HccCCCHHHHHH
Confidence 9999999999887653 465432222233344567888998888665432 23333222 22222 34444322 111
Q ss_pred H---------------------hhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhh
Q 041894 164 R---------------------FQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKF 204 (219)
Q Consensus 164 ~---------------------~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~ 204 (219)
. +.....+.|+.++|...|++...-+ +. +.+-.-|+..
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~--~~~e~~~~~~ 278 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY--NFVEHRYALL 278 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc--hHHHHHHHHH
Confidence 1 2222357888899999998877655 33 4444444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0022 Score=53.90 Aligned_cols=179 Identities=9% Similarity=-0.084 Sum_probs=110.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhh
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR-------FLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVA 73 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~ 73 (219)
+........+|.+.|++.....+...|.+.|.-.+. .+|..++.-....+..++-...|+..+ .. ++..
T Consensus 187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~-~p~l 265 (400)
T COG3071 187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN-DPEL 265 (400)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhc-ChhH
Confidence 344556666666777777777777777766654443 256666666666666666666666665 22 4455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHH-HHHhCCCccHHHHHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC-IIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-m~~~g~~~~~~~~~~ll~~y~ 152 (219)
-.+++.-+..-|+.++|.++..+-.+.+.-|.. ..+-.+.+-++.+.-.+..+. +.+.+-.| ..+.+|=..|.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~ 339 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLAL 339 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHH
Confidence 566677777777777777777776666555551 112233344454444444443 33333333 45666666666
Q ss_pred hcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhhHhH
Q 041894 153 QSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFEKRV 208 (219)
Q Consensus 153 ~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~~~m 208 (219)
+.+.+ .+|.+.|+.-. .++ ..+|+-+-++|.+.|+..
T Consensus 340 k~~~w------------------~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 340 KNKLW------------------GKASEALEAALKLRPS-ASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhHH------------------HHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChH
Confidence 66666 99999998644 345 788999999998888643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=51.25 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=66.1
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~ 86 (219)
..-|..|...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. . |. ..-.++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~--------------l-D~---------~~ie~k 84 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRE--------------L-DS---------EDIENK 84 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcc--------------c-cc---------hhHHHH
Confidence 4456677777888888888888888888 888888888887665543 1 11 111235
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
.-+.+.+|.+|..++++|+..||+.++.+..+
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 66788899999999999999999999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0026 Score=49.97 Aligned_cols=169 Identities=12% Similarity=0.024 Sum_probs=125.7
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~ 87 (219)
+=-+|-+.|++..|..-+++.++.. +.+..+|..+-..|-+.|+.+.|.+-|+..- .|.+-.+.|..=.=+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3446778899999999999998876 4466788889999999999999999998743 332556666666667888999
Q ss_pred hHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhh
Q 041894 88 VESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~ 166 (219)
++|...|++-...---| -..||..+--+..+.|+++.|+..++.-.+... -...+.-.+-....+.|+.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y--------- 189 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDY--------- 189 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccc---------
Confidence 99999999876553222 235788877777899999999999998777642 2345666777788888888
Q ss_pred hhccCCcchhhHHHHhhcCCCCCCeeehhHHHH
Q 041894 167 GFGFNGGREASVHEVLDKIPERNGNVELSSGLA 199 (219)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~ 199 (219)
-.|+-++++...+. ..+=.+|.-
T Consensus 190 ---------~~Ar~~~~~~~~~~-~~~A~sL~L 212 (250)
T COG3063 190 ---------APARLYLERYQQRG-GAQAESLLL 212 (250)
T ss_pred ---------hHHHHHHHHHHhcc-cccHHHHHH
Confidence 77777777766554 333333333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00026 Score=62.71 Aligned_cols=180 Identities=8% Similarity=-0.014 Sum_probs=102.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHH---HH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII---RC 80 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li---~~ 80 (219)
+.||.++=++|+-.++.+.|.+.|.+.++.. +...++|+.+=.-+.....+|.|..-|+..-.. |+..||++- -.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-DPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-CchhhHHHHhhhhh
Confidence 4566666666666666666666666655443 224455555544555555566666666655555 555555533 34
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
|.+.++++.|+-.|+.-.+ |.| |.+....+...+-+.|+.++|.++++.........-..-|.. ...+-..++.
T Consensus 499 y~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~-~~il~~~~~~-- 573 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR-ASILFSLGRY-- 573 (638)
T ss_pred eeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH-HHHHHhhcch--
Confidence 5555666666655544332 444 334444455555566666666666666554443333333333 2333344555
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
++|...+++.++ |++...|-.+-..|.+.|+
T Consensus 574 ----------------~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 574 ----------------VEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred ----------------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 999999998884 4436677777778877774
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0019 Score=53.14 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=130.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCCh------hhHHHHHHHHHhcCChhH
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-TPAPP------VAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~~~------~~~~~li~~~~~~g~~~~ 89 (219)
+.+.++|.++|-.|.+.. +-+..+.-+|=+.|-+.|.+|.|+++.+.+- +| |. .+.--|-+-|..+|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467899999999999843 2244455666678889999999999998865 55 53 233446677888899999
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH----HHHHHHHHHHhcCCchhHHH--H
Q 041894 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY----TNNALMNMYAQSQNMDMHIY--D 163 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~y~~~g~~~~~~~--~ 163 (219)
|.++|..+.+.+ +.-....--|+..|-...+|+.|..+-..+.+.+-++... -|.-|-..+....+++.+.+ .
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999887754 2223356678899999999999999998888877655422 22223333334455555532 1
Q ss_pred H--------------hhhhccCCcchhhHHHHhhcCCCCCCe----eehhHHHHHHhhhhH
Q 041894 164 R--------------FQGFGFNGGREASVHEVLDKIPERNGN----VELSSGLAGCNKFEK 206 (219)
Q Consensus 164 ~--------------~~~~~~~~g~~~~a~~l~~~m~~~~~~----~~~n~ll~~~~~~~~ 206 (219)
+ +....-..|+.+.|.+-++...+.| . .+-..+..+|.+.|+
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHhCC
Confidence 1 1122346888899999999888765 3 346778888888885
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00098 Score=59.16 Aligned_cols=197 Identities=13% Similarity=0.046 Sum_probs=144.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+-+.+-..|++.+|..++..+++.. +-....|-.+-.++.+.|+.+.|...|.+.- .| +.....+-+..+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP-~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP-DLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc-chhhhhcchhHH
Confidence 3577888888888999999999999998775 3356678888899999999999998887654 45 545444444444
Q ss_pred Hh-cCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhcCCch
Q 041894 82 TQ-NGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 82 ~~-~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~y~~~g~~~ 158 (219)
.+ .|++.+|...|.+-.+. .|.. ..|+.|-..+-..|++-.|.+-|++.++. .|+ ...|-.|=..|-..+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 44 48889998888776654 4553 57788877888889999999999987765 454 345666667777777777
Q ss_pred hH--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 159 MH--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 159 ~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
+| +|.. |.-.+++.|+++.|.+-+++..+ |+....||-|-+|+...|+
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc
Confidence 77 3433 22224689999999999998774 4534568888888877774
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00044 Score=53.84 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=64.5
Q ss_pred hhHHHHHHhCcccc-----CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHH
Q 041894 4 TKTLINLLKNPVSI-----KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSII 78 (219)
Q Consensus 4 ~~~~~~ll~~~~~~-----~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li 78 (219)
..+|..+|..+.+. |..+-...-+..|.+.|++.|..+|+.||+.+=+..-. -..+|+.+ .
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv--p~n~fQ~~------------F 112 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV--PRNFFQAE------------F 112 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc--cccHHHHH------------h
Confidence 34555555554433 45555555566666666666666666666655432211 11122111 1
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccCh
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 122 (219)
..| -.+-+-|.+++++|...|+.||..|+..+++.+++.+..
T Consensus 113 ~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 113 MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 111 125677899999999999999999999999999987754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=54.13 Aligned_cols=73 Identities=7% Similarity=-0.070 Sum_probs=47.8
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHH-HHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPS-VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
..+.+.|..++..-.+. .|+.+--++ +=+.....|+++.|.+.++.+.+....--..+...|..+|...|+.+
T Consensus 193 ~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 193 SSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 44566666666554432 233322222 23445567888888888888888776666778888888888888884
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0046 Score=48.00 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=60.8
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH-HhcCC--hhHHHHHHHHhHhCCCCC-CcccH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC-TQNGL--LVESLTCFVRMIGSGVYP-DHNVF 109 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~p-~~~t~ 109 (219)
+.|...|..+-..|...|++++|...|+... .|.+...+..+-.++ ...|+ .++|.+++++..+. .| +...+
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al 147 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTAL 147 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHH
Confidence 3455566666667777777777777776543 232556666666553 45555 36777777776554 23 33455
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 110 PSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 110 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
..+-..+...|++++|...|+.+.+..
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555666667777777777777766654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0018 Score=47.61 Aligned_cols=107 Identities=5% Similarity=-0.056 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 041894 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 24 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
+.++++..+. .|+. +..+-..+...|++++|...|+... .|.+..+|..+-..+.+.|++++|...|+...+.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3455555543 3443 4456667789999999999998765 3327788999999999999999999999998764
Q ss_pred CCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 102 VYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 102 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.| +...+..+-.++...|+.++|...+....+..
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45 55677788888889999999999999887754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0068 Score=50.01 Aligned_cols=155 Identities=6% Similarity=-0.108 Sum_probs=102.0
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+...|+.+=..+.+.|+++.|...|+...+.. +-+..+|..+-..+...|++++|.+.|+... .| +..........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P-~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP-NDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 35778888889999999999999999998764 3356677888888899999999999998764 34 32212222223
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh---CC--C-ccHHHHHHHHHHHHhc
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL---GV--D-LDLYTNNALMNMYAQS 154 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~--~-~~~~~~~~ll~~y~~~ 154 (219)
....+++++|...|.+.... ..|+...+ .+.. ...|+...+ ..+..+.+. .+ . .....|.-|-..|.+.
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEK-LDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSL 249 (296)
T ss_pred HHccCCHHHHHHHHHHHHhh-CCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 34567899999999775432 23443222 2222 234555544 344444321 11 1 1245788888999999
Q ss_pred CCchhHH--HHH
Q 041894 155 QNMDMHI--YDR 164 (219)
Q Consensus 155 g~~~~~~--~~~ 164 (219)
|+.++|+ |+.
T Consensus 250 g~~~~A~~~~~~ 261 (296)
T PRK11189 250 GDLDEAAALFKL 261 (296)
T ss_pred CCHHHHHHHHHH
Confidence 9999883 544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0024 Score=45.81 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
+......+...+.+.|++++|...|+... .|.+...|..+-..+.+.|++++|..+|+...+.. +.+...+..+-..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 33455666778888899999999988764 23266788888888888899999999998866543 3355667777778
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHH
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYT 143 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 143 (219)
+...|+.+.|...++...+.. |+...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 888899999999998877754 44444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0032 Score=46.26 Aligned_cols=101 Identities=10% Similarity=-0.086 Sum_probs=77.3
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
+...-.++.+.|+++.|...|....+.. +.+...|..+-..+.+.|++++|...|+... .|.+..++..+-.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344556678889999999998887765 4477788888888899999999999988765 333678888888888889
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHH
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFP 110 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~ 110 (219)
|++++|...|+.-.+. .|+...+.
T Consensus 106 g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 106 GEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHH
Confidence 9999999999887653 56654443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0052 Score=52.98 Aligned_cols=158 Identities=10% Similarity=-0.030 Sum_probs=97.9
Q ss_pred HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 124 (219)
.+...|++++|+..++.+. .|+|+.-+....+-+.+.++.++|.+.++.++.. .|+ ....-.+-+++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3445677777777777764 4535555566667777777777777777776654 455 3344455666777777777
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC---CCeee---hhHHH
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER---NGNVE---LSSGL 198 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~---~~~~~---~n~ll 198 (219)
|..++....... +-|...|..|-.+|...|+..++.-. -.+.++..|++++|..++..-++. + ..+ +..-|
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A-~AE~~~~~G~~~~A~~~l~~A~~~~~~~-~~~~aR~dari 469 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA-RAEGYALAGRLEQAIIFLMRASQQVKLG-FPDWARADARI 469 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHhccCC-cHHHHHHHHHH
Confidence 777766655443 45666777777777777777433211 112223456669998888765533 3 222 55667
Q ss_pred HHHhhhhHhHHH
Q 041894 199 AGCNKFEKRVVS 210 (219)
Q Consensus 199 ~~~~~~~~~m~~ 210 (219)
+...+...++++
T Consensus 470 ~~~~~~~~~~k~ 481 (484)
T COG4783 470 DQLRQQNEEFKP 481 (484)
T ss_pred HHHHHHHHHHHh
Confidence 776666666554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0044 Score=55.19 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=103.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
++|..+--.|...|+++.|..-+.+.++.. +.=...|+.|-.++-..|++.+|+..++..- .|--..+-|.|-..|.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344445555666666777766666666443 1123456666666666676666666665532 1102344555566666
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhcCCchhH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD-LYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~y~~~g~~~~~ 160 (219)
..|.+++|..+|..-.+ +.|.. ..++.|-..|-+.|++++|...+++..+ ++|+ ...|+.+=..|-..|+...|
T Consensus 366 E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHH
Confidence 66666666666655433 33432 3455555566666666666666665544 3343 33455555555555555554
Q ss_pred --HHHH-hh-------------hhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHH
Q 041894 161 --IYDR-FQ-------------GFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGC 201 (219)
Q Consensus 161 --~~~~-~~-------------~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~ 201 (219)
+|.. |+ -..-..|.|.+|.+-+++.. +||....|.-+++.+
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 2322 11 11124566699998888755 345233444444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0076 Score=50.55 Aligned_cols=154 Identities=11% Similarity=-0.003 Sum_probs=100.2
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHH---HHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChh
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISR---LLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~---ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~ 88 (219)
+...|+++.|..++++..+.. +.+...+.. +.......+..+.+.+.+..... |........+-..+...|+++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 456688888888888887653 334444442 22222234556666666654321 202233444556778889999
Q ss_pred HHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCC-CccH--HHHHHHHHHHHhcCCchhHHHHH
Q 041894 89 ESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGV-DLDL--YTNNALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~ll~~y~~~g~~~~~~~~~ 164 (219)
+|...+++..+. .|+ ...+..+-..+...|++++|...++...+... .|+. ..|-.+-..+...|++
T Consensus 132 ~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~------- 202 (355)
T cd05804 132 RAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY------- 202 (355)
T ss_pred HHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH-------
Confidence 999999888764 344 45667777788888999999998887665432 2332 3455677788888888
Q ss_pred hhhhccCCcchhhHHHHhhcCCCC
Q 041894 165 FQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
++|.+++++....
T Consensus 203 -----------~~A~~~~~~~~~~ 215 (355)
T cd05804 203 -----------EAALAIYDTHIAP 215 (355)
T ss_pred -----------HHHHHHHHHHhcc
Confidence 9999999886543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0045 Score=54.65 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=122.3
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHc-----C-CCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhcC-------CCCC
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKT-----L-EPNSRF-LISRLLFIYNNFNLVHDSLCLLDTLK-------TPAP 70 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-----g-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~-------~~~~ 70 (219)
.+++.|=..|++.|+++.|+..++...+- | ..|.+. -++.+...++..+.+++|..+++..- .+.+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 46666667899999999999888876542 2 223333 35677778899999999998876532 2213
Q ss_pred ---hhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCCC-cccHHHHHHHHhcccChhhHHHHHHH----HHHhC
Q 041894 71 ---PVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYPD-HNVFPSVLKSCTLLVDFRFGESVHAC----IIRLG 136 (219)
Q Consensus 71 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~----m~~~g 136 (219)
..+++.|=..|.+.|++++|.++|++.... +..+. ...++-+-..|.+.+..+.|.++|.+ |+..|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 357999999999999999999999996432 22333 45677788888999999999988877 44455
Q ss_pred CC--ccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 137 VD--LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 137 ~~--~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.. ....+|..|...|-+.|++ |+|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~------------------e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNY------------------EAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccH------------------HHHHHHHHHHH
Confidence 43 2478899999999999999 88888876543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00071 Score=55.43 Aligned_cols=142 Identities=10% Similarity=0.041 Sum_probs=87.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRC 80 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~ 80 (219)
.+|..+++..-+.+..+.|..+|.+.++.+ ...+.+...++|.. ...++.+.|.++|+..- .. +...|...|+-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 467777777777777888888888877554 34444444444433 33455666888877643 34 66777777777
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCc---ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDH---NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
+.+.|+.+.|..+|+..... +.++. ..|...++.=.+.|+++....+.+.+.+. .|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 77788888888888776644 23222 36777777777777777777777766654 34433444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0028 Score=54.40 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=116.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
|+-.++.+.|...|.+.++.+ +.....|+.+=.-|..-++...|.+-++... +. |-.+|=.|=++|.-.+.+.-|
T Consensus 340 YSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHH
Confidence 344557788888998888765 3355677777778999999999999888654 45 888999999999999999999
Q ss_pred HHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 91 LTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 91 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+-+|++-.. ++| |...|.+|-++|.+.++.++|...+......| ..+...+..|-+.|-+.++...|
T Consensus 418 LyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 418 LYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 999988665 455 67899999999999999999999999887776 56778899999999999998444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0042 Score=44.53 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=84.2
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.....+...+.+.|+++.|...|..+.+.+ +.+...+..+-..|.+.|++++|...++... .|.+...+..+-..+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555667788999999999999998865 5577888889999999999999999998764 2315677777888999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLK 114 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 114 (219)
..|+.++|...|+...+. .|+...+..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred HcCCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 999999999999887764 466655544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0043 Score=54.76 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=119.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHc-----C-CCCcHHHH-HHHHHHHhhcCCHHHHHHHHHhcC-------CCCC
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKT-----L-EPNSRFLI-SRLLFIYNNFNLVHDSLCLLDTLK-------TPAP 70 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-----g-~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~-------~~~~ 70 (219)
.++..+-..|...|+++.|+.++.+..+. | ..|...+. +.+=..|...+.+++|..+|+.+- .+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~-~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE-D 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC-C
Confidence 45556778999999999999999988765 2 23444433 335568888999999998888762 22 2
Q ss_pred ----hhhHHHHHHHHHhcCChhHHHHHHHHhH---hC--CCCCC-c-ccHHHHHHHHhcccChhhHHHHHHHHHHh---C
Q 041894 71 ----PVAWKSIIRCCTQNGLLVESLTCFVRMI---GS--GVYPD-H-NVFPSVLKSCTLLVDFRFGESVHACIIRL---G 136 (219)
Q Consensus 71 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~--g~~p~-~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---g 136 (219)
..+++.|-.+|.+.|++++|..++++-. +. |..+. . .-++.+...|+..+.+++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 3567777788999999999999888743 22 22222 2 35677788888999999999998774322 1
Q ss_pred CCcc----HHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 137 VDLD----LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 137 ~~~~----~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+.++ ..+++.|=..|-..|++ ++|+++|++..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~------------------~ea~~~~k~ai 394 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKY------------------KEAEELYKKAI 394 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcch------------------hHHHHHHHHHH
Confidence 2222 56889999999999999 88888887654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.021 Score=45.63 Aligned_cols=152 Identities=11% Similarity=-0.008 Sum_probs=103.6
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
++...|+-+....+...... ....|............+.|++..|...|.+.. .+ |-.+||.+=-+|-+.|+.++
T Consensus 75 a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHccChhH
Confidence 33444554444444333221 123344556667778888888888888888765 34 77888888888888888888
Q ss_pred HHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhh
Q 041894 90 SLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~ 168 (219)
|..-|.+-.+- .|+ ...++.+--.+.-.|+.+.|+.++..-...+ .-|..+-..|.-+....|++
T Consensus 153 Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~----------- 218 (257)
T COG5010 153 ARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF----------- 218 (257)
T ss_pred HHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh-----------
Confidence 88888776653 333 3456666667777788888888877766554 34666777777778888888
Q ss_pred ccCCcchhhHHHHhhcCCC
Q 041894 169 GFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~ 187 (219)
+.|+++...=..
T Consensus 219 -------~~A~~i~~~e~~ 230 (257)
T COG5010 219 -------REAEDIAVQELL 230 (257)
T ss_pred -------HHHHhhcccccc
Confidence 999998875443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.006 Score=47.36 Aligned_cols=106 Identities=9% Similarity=-0.001 Sum_probs=85.7
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhhcCC--HHHHHHHHHhcC--CCCChhhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFI-YNNFNL--VHDSLCLLDTLK--TPAPPVAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~-~~~~g~--~~~A~~~~~~m~--~~~~~~~~~~l 77 (219)
|...|..+-..+...|+++.|...|++..+.. +.+...+..+-.+ |.+.|+ .++|..++++.. .|.+..++..+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 56778888889999999999999999998876 4467777777765 577777 599999999875 34377889999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 110 (219)
-..+.+.|++++|...|+.+.+. .+|+..-+.
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~ 182 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ 182 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH
Confidence 99999999999999999998865 356654443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0046 Score=53.00 Aligned_cols=123 Identities=13% Similarity=0.027 Sum_probs=98.6
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
+-..++++.+...++++.|..+|+++.+.. |+. ...|...+...++-.+|.+++++.- .|.|....+.-.+-+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344567788888899999999999999875 543 4457777777888889999987754 2325566666667788
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACII 133 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~ 133 (219)
+.++++.|+.+.++..+. .|+. .+|..|..+|.+.|+++.|...+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999998764 6765 599999999999999999998888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0045 Score=53.22 Aligned_cols=137 Identities=12% Similarity=0.038 Sum_probs=81.3
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a~~ 92 (219)
..|+++.|...+.+.++..-.-....||.=+ .+-..|++++|++.|-.+. .. +..+.--+-+-|-...++.+|.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHH
Confidence 4577888888887777655333333333322 4556778888888877664 23 44444455566666667777776
Q ss_pred HHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 93 CFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 93 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
++ |+...+.| |..+.+-|-+-|-+-|+-.+|.+.+=.--+. ++.|..+...|-.-|....-+
T Consensus 580 ~~--~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 580 LL--MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HH--HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHH
Confidence 66 33333444 4566666777777777777777665443222 344566666666666655555
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0024 Score=41.23 Aligned_cols=80 Identities=9% Similarity=-0.001 Sum_probs=36.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g 155 (219)
.+...+...|++++|..+|++..+.. +.+...+..+-..+...++++.|.+.++...+.. ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 33444444555555555555544321 1112334444444445555555555555544433 122234445555555555
Q ss_pred Cc
Q 041894 156 NM 157 (219)
Q Consensus 156 ~~ 157 (219)
+.
T Consensus 83 ~~ 84 (100)
T cd00189 83 KY 84 (100)
T ss_pred hH
Confidence 55
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.013 Score=54.01 Aligned_cols=129 Identities=9% Similarity=-0.005 Sum_probs=90.0
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
++.++-.|-....+.|.+++|+.+++...+. .| +......+...+.+.+++++|....++.- .|.+....+.+-.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4556666666777778888888888877755 34 34455666777778888888888777654 3424456666667
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
++.+.|++++|..+|++.... .|+ ..++..+-.++-..|+.++|...|......
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777788888888888887762 344 567777777777778888888887776544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0023 Score=41.35 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=40.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccCh
Q 041894 45 LLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF 122 (219)
Q Consensus 45 ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 122 (219)
+...+.+.|++++|...|.... .|.+...+..+-..+...|++++|.+.|....+.. +.+..++..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 3344444555555555554432 11022344444555555555555555555544322 11223444444555555555
Q ss_pred hhHHHHHHHHH
Q 041894 123 RFGESVHACII 133 (219)
Q Consensus 123 ~~a~~~~~~m~ 133 (219)
+.|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=43.52 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=57.7
Q ss_pred cCChhHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEP-NSRFLISRLLFIYNNFNLVHDSLCLLDTLK-TPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.|+++.|..+++++.+..-. ++...+-.+-.+|.+.|++++|..+++..+ .+.+....-.+-.+|.+.|++++|.++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 47889999999999887642 345555568889999999999999998743 1203233334468888999999999988
Q ss_pred HH
Q 041894 95 VR 96 (219)
Q Consensus 95 ~~ 96 (219)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0027 Score=52.03 Aligned_cols=126 Identities=7% Similarity=0.040 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLKTPA----PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
.+|-.+|...-|.+.++.|+.+|.+....+ .+....++|.-++ .++.+.|.++|+...+. +.-+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999876430 2233344443333 57788899999997765 55677789999999
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccH---HHHHHHHHHHHhcCCchhH--HHHHhhhh
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDL---YTNNALMNMYAQSQNMDMH--IYDRFQGF 168 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~y~~~g~~~~~--~~~~~~~~ 168 (219)
+.+.++.+.++.+|+..... +.++. ..|...++.=.+.|+++.+ +++.+.++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998665 33333 6999999999999998765 55554443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0093 Score=57.40 Aligned_cols=182 Identities=7% Similarity=0.021 Sum_probs=82.2
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHc-CC---CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-CCC-hhhHHHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LE---PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-PAP-PVAWKSIIR 79 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~-g~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~-~~~~~~li~ 79 (219)
.|-.-+.-.-+.+..+.|++++++.+.. ++ .--..+|.++++.-.--|.-+...++|+...+ . | ...|..|..
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLG 1538 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHH
Confidence 3444444445555555555555555432 11 11223455555555555555555555554431 1 2 234555555
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhcCCch
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-LDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~y~~~g~~~ 158 (219)
-|.+.+..++|-++|+.|.+. +.-...+|......+.+....+.|..++....+.=.+ -......-....--+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 555555555555555555543 1122334444455555544444444444443322111 01122222222233344444
Q ss_pred hH--HHHH-hhhhc-------------cCCcchhhHHHHhhcCCCCC
Q 041894 159 MH--IYDR-FQGFG-------------FNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 159 ~~--~~~~-~~~~~-------------~~~g~~~~a~~l~~~m~~~~ 189 (219)
+. +|+. +.+|. -+.|+.+.++++|++.....
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 32 3322 22221 13444499999999877543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=43.29 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=74.3
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHH-HHH--HHHHHhhcCCHHHHHHHHHhcCC--CCCh----hhHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL-ISR--LLFIYNNFNLVHDSLCLLDTLKT--PAPP----VAWK 75 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~-~~~--ll~~~~~~g~~~~A~~~~~~m~~--~~~~----~~~~ 75 (219)
..|..++.+. ..++...+...++.+.+.. +.+... ... +-..+...|++++|...|+.... | |. ...-
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHH
Confidence 3455666665 3677777777777777653 223222 222 33566777888888888877652 2 22 2344
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHH
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
.|-..+...|++++|+..++......+ ....+...=+.+.+.|+.+.|+..|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456677777888888877765433322 223455566677777888888777654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0086 Score=43.88 Aligned_cols=123 Identities=10% Similarity=0.068 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc--cHHH
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP----VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN--VFPS 111 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ 111 (219)
..|..++..+ ..++...+...++.+. .| +. .+.-.+-..+...|++++|...|+......-.|+.. ..-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4566666666 4888888888888876 23 22 223334478888999999999999998876223222 2333
Q ss_pred HHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
+-..+...|+++.|...++...... .....+..+=+.|.+.|+. ++|+..|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~------------------~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDY------------------DEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCH------------------HHHHHHHHH
Confidence 5677788999999999997754433 3344566677899999999 999998874
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0078 Score=48.00 Aligned_cols=125 Identities=15% Similarity=0.042 Sum_probs=101.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
..+...+...+.|++..|...+.+..+.. ++|...|+.+=-+|-+.|+.++|+.-|.+.. .+.+....|.+--.+.-
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 44456778889999999999999987665 7899999999999999999999999998754 22155777777777777
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHH
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
.|+++.|..++..-...+ .-|..+-..+--.....|+++.|+.+...-
T Consensus 181 ~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 181 RGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred cCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 899999999999887664 235666777788889999999999986543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.013 Score=40.51 Aligned_cols=95 Identities=11% Similarity=0.031 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCcccHHHHHH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPDHNVFPSVLK 114 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~ 114 (219)
+-.+...+.+.|++++|.+.|..+. .|.+ ...+..+-..+.+.|++++|...|+...... -......+..+-.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444555566666666666666553 2201 2344456666666666666666666655431 0111234455555
Q ss_pred HHhcccChhhHHHHHHHHHHhC
Q 041894 115 SCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~g 136 (219)
++.+.|+.+.|...++.+.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 5666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.004 Score=55.40 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CC---Ch-----------------------
Q 041894 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PA---PP----------------------- 71 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~---~~----------------------- 71 (219)
.++|...|+.+. .-+..+.++...+=.+|...++.++|+++|+..+. |- +.
T Consensus 335 ~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 455666666632 22233445556666677777777777777776641 10 33
Q ss_pred --------hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH
Q 041894 72 --------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY 142 (219)
Q Consensus 72 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 142 (219)
.+|-++=++|.-.++.+.|.+.|+.-.+ +.| ..++|+.+=.=+.....+|.|...|..- +..|..
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~r 487 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPR 487 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCch
Confidence 4455555555555555555555544332 233 2334433333333334444444444332 334444
Q ss_pred HHHHH---HHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 143 TNNAL---MNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 143 ~~~~l---l~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
.||+. -..|.|.+++ +.|+-.|++-.+-
T Consensus 488 hYnAwYGlG~vy~Kqek~------------------e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKL------------------EFAEFHFQKAVEI 518 (638)
T ss_pred hhHHHHhhhhheeccchh------------------hHHHHHHHhhhcC
Confidence 44443 2344455555 9999989887754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.032 Score=47.06 Aligned_cols=149 Identities=10% Similarity=-0.019 Sum_probs=83.7
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~ 83 (219)
|-....+--+.|+.+.+-++..+..+.--.++...+-+.-......|+.+.|..-.+++. .. ++.......++|.+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~ 199 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 333344445555555555555555544224444444555555555566555555554432 23 55666667777777
Q ss_pred cCChhHHHHHHHHhHhCCCCCCc-------ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDH-------NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
.|++++...+...|.+.|+--|+ .+|..+++=+...++.+.-..-|+...+. ...+...--+++.-+.++|+
T Consensus 200 ~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 200 LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCC
Confidence 77777777777777666643332 45666666666655555555555555332 34445555666666666666
Q ss_pred c
Q 041894 157 M 157 (219)
Q Consensus 157 ~ 157 (219)
.
T Consensus 279 ~ 279 (400)
T COG3071 279 H 279 (400)
T ss_pred h
Confidence 6
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0052 Score=44.14 Aligned_cols=100 Identities=8% Similarity=0.023 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
|..++.++|.++++.|+++....+++..-.. |+. +-...+. --..+...|+..+..+++.+|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI-~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI-DVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC-CCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 3456777777777777777777777654321 111 0000000 1123345677777777777777
Q ss_pred cccChhhHHHHHHHH-HHhCCCccHHHHHHHHHHHHhc
Q 041894 118 LLVDFRFGESVHACI-IRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m-~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
..|++..|.++.+.. .+.+++.+..+|..|++=--..
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 777777777776663 4556666677777777544433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.033 Score=51.32 Aligned_cols=148 Identities=6% Similarity=-0.035 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc-cHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN-VFPSV 112 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l 112 (219)
..+...+-.|-....+.|..++|+.+++... .|.+.-..-.+...+.+.+++++|+..++..... .|+.. ....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 3456677788888899999999999999875 4535678888999999999999999999998765 57655 44555
Q ss_pred HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH-hhhh-------ccCCcchhhHHHHh
Q 041894 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR-FQGF-------GFNGGREASVHEVL 182 (219)
Q Consensus 113 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~-~~~~-------~~~~g~~~~a~~l~ 182 (219)
-.++.+.|..++|..+|+.+...+ .-+...+..+=.++-+.|+.++| .|+. +..+ ....+++..-..++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAAL 239 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 566678999999999999998843 23477888888999999999666 3433 2222 12334555555555
Q ss_pred hcCC
Q 041894 183 DKIP 186 (219)
Q Consensus 183 ~~m~ 186 (219)
++..
T Consensus 240 ~~~~ 243 (694)
T PRK15179 240 RRLG 243 (694)
T ss_pred HHcC
Confidence 5544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.021 Score=45.86 Aligned_cols=137 Identities=9% Similarity=-0.049 Sum_probs=90.7
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----NGLLV 88 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~ 88 (219)
.|++.++++.|.+.... |-. ......=...+.+..+++-|+..++.|.+-.+-.|.+-|-+++.+ .+..+
T Consensus 117 i~~~~~~~deAl~~~~~----~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHL----GEN--LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HhhcCCChHHHHHHHhc----cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence 56777788887776554 111 222222223345566777888888888754234455544444444 46799
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+|+-+|++|-+. ..|+..+.+-...++...|++++|+.+++........ +..+...+|.+---.|.-
T Consensus 191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 999999999643 6899999999999999999999999999998766533 334444444444444544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0058 Score=49.56 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=85.1
Q ss_pred HHHHHHHHhcC--CCCChhhHHHHHHHHHhc-----CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc--------
Q 041894 56 HDSLCLLDTLK--TPAPPVAWKSIIRCCTQN-----GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV-------- 120 (219)
Q Consensus 56 ~~A~~~~~~m~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-------- 120 (219)
-..++.|...+ +. |--+|-+.+..|... +..+--+..++.|.+-|++-|..+|+.||+.+=+-.
T Consensus 51 v~~e~~F~aa~~~~R-dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKR-DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred cchhhhhhccCcccc-cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 34455666665 45 777888888877654 567777778888999999999999999999887652
Q ss_pred --------ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHH
Q 041894 121 --------DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 121 --------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~ 164 (219)
.-+-+..++++|...|+.||..+-..||++|++.|..-..++++
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm 181 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRM 181 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHH
Confidence 34567899999999999999999999999999999875444433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0069 Score=56.17 Aligned_cols=184 Identities=7% Similarity=0.072 Sum_probs=119.3
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA--PPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
+..+.|.++|.+.++.. +-|.+.-|-+=-.++.+|++..|..||.+.++.. +..+|-.+-++|...|++..|.++|.
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887765 4477777777778889999999999999887320 45788899999999999999999998
Q ss_pred HhH-hCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC---chhHHHHHhhhhccC
Q 041894 96 RMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN---MDMHIYDRFQGFGFN 171 (219)
Q Consensus 96 ~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~---~~~~~~~~~~~~~~~ 171 (219)
.-. +..-.-+..+.+-|-.++-+.|.+.+|....-......+.-....+|..+-..--.-. ..... +.+....
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t---~eev~~a 781 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRT---LEEVLEA 781 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccccc---HHHHHHH
Confidence 844 4444445667777888888889999888887665555544455566655432211000 00001 1111112
Q ss_pred CcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 172 GGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
-++++.|.++|..|..-.+...--..+.-+++.+
T Consensus 782 ~~~le~a~r~F~~ls~~~d~r~~~~~~~~~a~~c 815 (1018)
T KOG2002|consen 782 VKELEEARRLFTELSKNGDKRISKTVIAQEAQLC 815 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 2444889999998874321222233444444444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.008 Score=43.18 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=67.9
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh--cCCCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT--LKTPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~li~~ 80 (219)
|..++.++|-++++.|+++....+.+..= |+.++.. ...+. +.. -..| +..+..+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~-------~~~~spl~P-t~~lL~AIv~s 61 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD-------YPPSSPLYP-TSRLLIAIVHS 61 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc-------cCCCCCCCC-CHHHHHHHHHH
Confidence 56789999999999999999888775442 2222111 00000 110 1146 77888888888
Q ss_pred HHhcCChhHHHHHHHHhHhC-CCCCCcccHHHHHHHHhcccC
Q 041894 81 CTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~ 121 (219)
|+.+|++..|+++.+...+. +++.+..+|..|++=+...-+
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 88888888888888886644 677677788888877765544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.062 Score=46.59 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=98.2
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
....|+++.|+..+..+++.- +-|++.+......+.+.++.++|.+.++.+. .|.....+-.+-+++.+.|++++|.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 346789999999999987653 4577777888889999999999999999876 4512566777889999999999999
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
.+++.-..+ .+-|...|..|-.+|...|+..++.....+...
T Consensus 395 ~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 395 RILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999997765 355778999999999999999998888776543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=43.52 Aligned_cols=157 Identities=11% Similarity=-0.019 Sum_probs=97.3
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcC-CCCcHHH-HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh-
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFL-ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ- 83 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~- 83 (219)
.+-..+...++.+.+..-+....+.. ..++..- ....-..+...|++++|...+++.- .|.|...++. ...+..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~ 89 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGL 89 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHh
Confidence 33344444567777666666654433 2233322 2222335677899999999988754 3425555553 223333
Q ss_pred ---cCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 84 ---NGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 84 ---~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
.+..+.+.+.+.. .....|+.. ....+-..+...|+++.|...++...+.. +.+...+..+-.+|...|++
T Consensus 90 ~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~-- 164 (355)
T cd05804 90 GDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF-- 164 (355)
T ss_pred cccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH--
Confidence 3445555544433 122233332 23344457788999999999999988875 34566788888999999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.+++++...
T Consensus 165 ----------------~eA~~~l~~~l~ 176 (355)
T cd05804 165 ----------------KEGIAFMESWRD 176 (355)
T ss_pred ----------------HHHHHHHHhhhh
Confidence 999999997664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.017 Score=40.00 Aligned_cols=95 Identities=12% Similarity=-0.042 Sum_probs=75.3
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC----hhhHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE--PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP----PVAWKSI 77 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~~l 77 (219)
++-.....+.+.|+++.|...|..+.+..- ......+..+-..+.+.|+++.|...|+.+. .| + ...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-KSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-CCCcccHHHHHH
Confidence 455666677889999999999999987541 1123466778889999999999999999875 34 3 3467778
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
-.++.+.|++++|...+++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888999999999999999988763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.015 Score=43.93 Aligned_cols=127 Identities=7% Similarity=-0.044 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
...|..+-..+...|++++|...|++..+..-.|. ...+..+-..+.+.|+++.|...+....+.. +.+...+..+-
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34455566666666777777777776654322221 2355666666667777777777776665543 12344555555
Q ss_pred HHHHhcCCchhHH--HHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 149 NMYAQSQNMDMHI--YDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 149 ~~y~~~g~~~~~~--~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
.+|...|+...+. ++.-.... ++|.+++++....+ +.-|..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~------~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALF------DKAAEYWKQAIRLA-PNNYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHH------HHHHHHHHHHHhhC-chhHHHHHHHHHhcC
Confidence 6666666532110 11111111 67777777766655 555666666665555
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.091 Score=49.12 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC--C---hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH--
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA--P---PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP-- 110 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-- 110 (219)
|+...+.|-+.|...|+++.+..+...+...- + ...|=-+=.+|...|++++|..+|-+-. +..||..+++
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCcccccc
Confidence 33444455555555555555554444332110 0 1123333445555555555555553322 2334432222
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC-
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN- 189 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~- 189 (219)
-+-..+.+.|+++.+...|+.+.+.. +.+..+...|=..|+..+.- .-..++|..++.+..++.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~--------------~~~~d~a~~~l~K~~~~~~ 411 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK--------------QEKRDKASNVLGKVLEQTP 411 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh--------------hHHHHHHHHHHHHHHhccc
Confidence 24445555555555555555544432 23344444444444444311 112366666665544321
Q ss_pred -C-------------eeehhHHHHHHhhhhHhHHHcCCC
Q 041894 190 -G-------------NVELSSGLAGCNKFEKRVVSAGHD 214 (219)
Q Consensus 190 -~-------------~~~~n~ll~~~~~~~~~m~~~g~~ 214 (219)
+ .-+|-+ +.+|.++.+.+..+|-+
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ 449 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC
Confidence 0 246777 89999998888777643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.057 Score=43.48 Aligned_cols=139 Identities=7% Similarity=-0.055 Sum_probs=101.2
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC
Q 041894 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD 105 (219)
Q Consensus 26 l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 105 (219)
+.+.+.......+......-...|++.+++++|.+........ .....=++.+.+..+.+-|.+-++.|++-. +
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l---E~~Al~VqI~lk~~r~d~A~~~lk~mq~id---e 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL---EAAALNVQILLKMHRFDLAEKELKKMQQID---E 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHccc---h
Confidence 4445554445555454555556789999999999999874333 333333455666777899999999998642 4
Q ss_pred cccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHH
Q 041894 106 HNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181 (219)
Q Consensus 106 ~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l 181 (219)
..|.+-|-+++.+ .+...+|..+|++|-.. ..|+.-+.|-...+....|++ ++|+.+
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~------------------eeAe~l 229 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY------------------EEAESL 229 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH------------------HHHHHH
Confidence 5566656666653 35688999999999553 568888999999999999999 999999
Q ss_pred hhcCCCCC
Q 041894 182 LDKIPERN 189 (219)
Q Consensus 182 ~~~m~~~~ 189 (219)
+++...++
T Consensus 230 L~eaL~kd 237 (299)
T KOG3081|consen 230 LEEALDKD 237 (299)
T ss_pred HHHHHhcc
Confidence 99887664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.037 Score=48.02 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=120.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.+++..|..+|+..+... ..+...|-..+.+=.+++++.+|..+|+... -|.=-..|-..+..=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 356778888999888776 5577788889999999999999999998754 2201133555555555678999999999
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH--------
Q 041894 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR-------- 164 (219)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~-------- 164 (219)
..-.+ .+|+...|.+.|+-=.+-+.++.|+.+++.-+-.+ |+...|--....=-++|.+..+ +|..
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 88655 58999999999999999999999999998865543 8888887777777777777544 3332
Q ss_pred ---------hhhhccCCcchhhHHHHhhcCC
Q 041894 165 ---------FQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 165 ---------~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+..|-.++...+.|.-+|.--.
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666665433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.061 Score=48.30 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=128.6
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~ 84 (219)
.|-.-+.-..+.++...-.+.|+..++. .+.....+|...|...-+.+-++-+..+++..-+- ++..-+-.|..+.+.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-APEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-CHHHHHHHHHHHHhc
Confidence 3444445556777888888888877654 34445567888888888888888999999887655 556678888999999
Q ss_pred CChhHHHHHHHHhHhC------CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCC--Ccc--HHHHHHHHHHHHhc
Q 041894 85 GLLVESLTCFVRMIGS------GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV--DLD--LYTNNALMNMYAQS 154 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~--~~~~~~ll~~y~~~ 154 (219)
+++++|-+.+...+.. .-+-+...|.-+.+-.++.-+.-....+ +.+.+-|+ -+| ...|++|-+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 9999999998887533 2344556777776666665444333333 22334443 244 57899999999999
Q ss_pred CCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC--CCeeehhHHHHHHhhhhHhHHHc
Q 041894 155 QNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER--NGNVELSSGLAGCNKFEKRVVSA 211 (219)
Q Consensus 155 g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~n~ll~~~~~~~~~m~~~ 211 (219)
|++ ++|+++|++-... . +.-|+.+-++|++-...+.++
T Consensus 262 g~~------------------ekarDvyeeai~~v~t-vrDFt~ifd~Ya~FEE~~~~~ 301 (835)
T KOG2047|consen 262 GLF------------------EKARDVYEEAIQTVMT-VRDFTQIFDAYAQFEESCVAA 301 (835)
T ss_pred hhh------------------HHHHHHHHHHHHhhee-hhhHHHHHHHHHHHHHHHHHH
Confidence 999 9999999874432 3 344778888888777544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.048 Score=42.98 Aligned_cols=131 Identities=10% Similarity=0.042 Sum_probs=92.4
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCC-CcH-HHHHHHHHHHhhc--------CCHHHHHHHHHhcC--CCCChhh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-NSR-FLISRLLFIYNNF--------NLVHDSLCLLDTLK--TPAPPVA 73 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-~~~-~~~~~ll~~~~~~--------g~~~~A~~~~~~m~--~~~~~~~ 73 (219)
++..+-.++.+.|+++.|...++.+.+..-. |.. ..+..+-.++.+. |+.++|.+.|+.+. .|.+...
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 5566667888999999999999999876421 221 1333333344433 77899999998875 3412222
Q ss_pred HH-----------------HHHHHHHhcCChhHHHHHHHHhHhCC-CCC-CcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 74 WK-----------------SIIRCCTQNGLLVESLTCFVRMIGSG-VYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 74 ~~-----------------~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
+. .+-..+.+.|++++|...|.+..+.. -.| ....+..+..++...|+.++|...++.+..
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 152 PDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 23456778899999999999987652 112 345788999999999999999999988876
Q ss_pred hC
Q 041894 135 LG 136 (219)
Q Consensus 135 ~g 136 (219)
+.
T Consensus 232 ~~ 233 (235)
T TIGR03302 232 NY 233 (235)
T ss_pred hC
Confidence 54
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.022 Score=48.34 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=81.3
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
.+...|+++.|..+|.+.++.. +.+...|..+-.+|.+.|++++|...++... .|.+...|..+-.+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3456789999999999998875 4467778888889999999999999998765 332667888888999999999999
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 91 LTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
...|++..+ +.|+.......+.-|
T Consensus 90 ~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 90 KAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999998876 457776666666555
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.075 Score=51.55 Aligned_cols=175 Identities=10% Similarity=0.054 Sum_probs=134.8
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC------C--CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK------T--PAPPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 25 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~------~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
.=|+++.++. +.+...|=..|......+++++|++++++.- + . -.-.|.++++--...|.-+...++|++
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeE-KLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEE-KLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHH-HHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3466666664 5677889999999999999999999997652 1 1 235688888888888888888899988
Q ss_pred hHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH----------
Q 041894 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR---------- 164 (219)
Q Consensus 97 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~---------- 164 (219)
..+-. --...|..|...|.+....++|.++++.|.+. +.-...+|....+.+.+..+-+++ +..+
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 76542 12347889999999999999999999999765 335678999999999998886544 2111
Q ss_pred ---hhhh---ccCCcchhhHHHHhhcCCCC---CCeeehhHHHHHHhhhh
Q 041894 165 ---FQGF---GFNGGREASVHEVLDKIPER---NGNVELSSGLAGCNKFE 205 (219)
Q Consensus 165 ---~~~~---~~~~g~~~~a~~l~~~m~~~---~~~~~~n~ll~~~~~~~ 205 (219)
|.-| -+++||=++++.+|+..... . .-.|+..|+.=.++|
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHG 1648 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccC
Confidence 3333 47899999999999987632 3 567999999888866
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.051 Score=47.80 Aligned_cols=134 Identities=5% Similarity=0.013 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 20 KSQAKQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA----PPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.+.....++.++..- ..| ..+|..+|+.--|..-++.|+.+|.+.++.+ .+..++++|.-||. ++..-|+++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 344444555554433 333 3457777887778777899999998886311 67788889988885 6888899999
Q ss_pred HH-hHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCCc
Q 041894 95 VR-MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD--LYTNNALMNMYAQSQNM 157 (219)
Q Consensus 95 ~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~y~~~g~~ 157 (219)
+- |++-|=. ..--...++.++..++-..++.+|+.....++.+| ...|..+|+-=..-|++
T Consensus 425 eLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 425 ELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 76 4443322 22334567778888888999999999888876665 56788888877777777
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0065 Score=38.05 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=28.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
+.|+++.|..+|+.+.+.. +-+...+-.+..+|.+.|++++|..+++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666666665543 2245555556666666666666666666554
|
... |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.2 Score=46.55 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=100.3
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
|+++.|++++.+.++.. +.+...|.+|=..|-..|+.+++...|-.. .+. |...|..+-.-..+.|++++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHH
Confidence 89999999998888776 557778888888999999999988776433 344 7788888888888889999999888
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH----HHHHHhcCCc
Q 041894 95 VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL----MNMYAQSQNM 157 (219)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l----l~~y~~~g~~ 157 (219)
.+-.+.. +++...+--=..-|-+.|+...|..-+.++.+.-.+.|..-...+ ++.|...++.
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 8877653 445545555566777888888888888888776543333333333 4445556666
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0059 Score=38.27 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=23.7
Q ss_pred hcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 51 NFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 51 ~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
+.|++++|.+.|+..- .|.+...+-.+..+|.+.|++++|..+++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555442 222444444555555555555555555555443
|
... |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.083 Score=47.04 Aligned_cols=154 Identities=10% Similarity=0.049 Sum_probs=110.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-RFLISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCT 82 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~ 82 (219)
++.-+-..|-..|+++.|....+..++.. |+ +..|..--..|-+.|++++|.+.++..+.. +|-..=+.....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 34444556778999999999999888774 54 557777788899999999999999887743 16677788889999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccH--------HHHHHHHhcccChhhHHHHHHHHHHh--CC---CccHHHHHH---
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVF--------PSVLKSCTLLVDFRFGESVHACIIRL--GV---DLDLYTNNA--- 146 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~g~~~~a~~~~~~m~~~--g~---~~~~~~~~~--- 146 (219)
++|+.++|.+++..+.+.+..|-...+ .-.-.+|.+.|++..|...+..+.+. .+ +-|.++|..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 999999999999988887765554433 34567788889988888777766543 11 234444421
Q ss_pred HHHHHHhcCCchhHH
Q 041894 147 LMNMYAQSQNMDMHI 161 (219)
Q Consensus 147 ll~~y~~~g~~~~~~ 161 (219)
.+++|...=++++.+
T Consensus 354 t~r~Y~~~L~~ed~l 368 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKL 368 (517)
T ss_pred cHHHHHHHHHHHHHh
Confidence 245565555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.19 Score=43.56 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
.+|+.+=+-|....+...|.+-|+.-++ |.| |...|-.|=++|.-.+...-|.-.++...... +.|...|.+|=++
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~C 441 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGEC 441 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 3444444444444444444444444332 222 44556666666666666767777777665543 4588999999999
Q ss_pred HHhcCCchhH
Q 041894 151 YAQSQNMDMH 160 (219)
Q Consensus 151 y~~~g~~~~~ 160 (219)
|.+.++.++|
T Consensus 442 Y~kl~~~~eA 451 (559)
T KOG1155|consen 442 YEKLNRLEEA 451 (559)
T ss_pred HHHhccHHHH
Confidence 9999999555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.28 Score=42.57 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=99.6
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH-HhcC-CCCChhhHHHHHHHHHhcCChh
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLL-DTLK-TPAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~-~~m~-~~~~~~~~~~li~~~~~~g~~~ 88 (219)
-+.|-...+..+|.+++.+.. +-++.|+.+.+.|-..|-+.|+..+|...+ +..+ -|.|..|.-=|-..|...--++
T Consensus 565 aniye~led~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence 334444455666666655542 124557778888888888888888887764 4444 1215544444444555555568
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHh-cccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCT-LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
+|..+|+.- .=+.|+..-|..++.+|. +.|++..|..++..+.+. ++-|.....-|++.....|..+
T Consensus 644 kai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 644 KAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 888888763 237899999999988875 679999999999988654 6778888888898888888764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.06 Score=40.32 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHH-HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC----hhhHHHHHHHHHhcCChhHHHH
Q 041894 20 KSQAKQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP----PVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 20 ~~~a~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~~li~~~~~~g~~~~a~~ 92 (219)
+..+...+..+. ..+-.-....|..+...+...|++++|...|+... .+ + ..+|..+-..+...|++++|..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555553 33433345667777778888899999999988763 22 2 2478888888889999999999
Q ss_pred HHHHhHhCCCCCC-cccHHHHHHHHh-------cccChhhHHHHHHH
Q 041894 93 CFVRMIGSGVYPD-HNVFPSVLKSCT-------LLVDFRFGESVHAC 131 (219)
Q Consensus 93 ~~~~m~~~g~~p~-~~t~~~ll~~~~-------~~g~~~~a~~~~~~ 131 (219)
.++...+. .|+ ..++..+...+. ..|+++.|...+..
T Consensus 94 ~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 94 YYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99887653 333 334555555666 67787766555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.17 Score=45.19 Aligned_cols=155 Identities=15% Similarity=0.066 Sum_probs=106.9
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHc----C----------CCCcHHHH--HHHHHHHhhcCCHHHHHHHHHhcC--
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKT----L----------EPNSRFLI--SRLLFIYNNFNLVHDSLCLLDTLK-- 66 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~----g----------~~~~~~~~--~~ll~~~~~~g~~~~A~~~~~~m~-- 66 (219)
.+|+.|-.-|.......-...++...... + -.|+...| .-+-..|-+.|+.++|...++...
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45666666665555555555666655433 1 13555444 555567889999999999999765
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH---
Q 041894 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT--- 143 (219)
Q Consensus 67 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--- 143 (219)
.|-.+..|..--.-+-+.|++.+|.+.+++-++-. .-|.+.=+-....+.++|+.+.|..++..--+.+..|-...
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 34124567888888999999999999999887654 34677777888999999999999999988766664332211
Q ss_pred ---H--HHHHHHHHhcCCchhH
Q 041894 144 ---N--NALMNMYAQSQNMDMH 160 (219)
Q Consensus 144 ---~--~~ll~~y~~~g~~~~~ 160 (219)
| ...-.+|.|.|++..|
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 1 2223677788888555
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.05 Score=45.45 Aligned_cols=126 Identities=12% Similarity=0.103 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 120 (219)
+.+..|.-+...|+.+.|.++-.+++-| |..-|-.-|.+++..+++++-.++-. +.- ++.-|-.++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~-dkrfw~lki~aLa~~~~w~eL~~fa~----skK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVP-DKRFWWLKIKALAENKDWDELEKFAK----SKK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCCHHHHHHHHh----CCC--CCCChHHHHHHHHHCC
Confidence 4555566777789999999999999999 99999999999999999998765433 222 3478889999999999
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
...+|..+...+ .+.--+..|.+.|++..|+ +.+.+.+|++.=..+.+.+...
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~-----~~A~~~kd~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAA-----QEAFKEKDIDLLKQILKRCPGN 304 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHH-----HHHHHcCCHHHHHHHHHHCCCC
Confidence 999888886662 2255688899999987663 3334556666666666666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=43.30 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=40.0
Q ss_pred cccCChhHHHHHHHHHHHc--C-CCCcHH------------------HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh
Q 041894 15 VSIKTKSQAKQLHAQIFKT--L-EPNSRF------------------LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP 71 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~--g-~~~~~~------------------~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~ 71 (219)
...++.+.+...+.++... | +-|+.. +...++..+...|+++.|..+...+. .|-|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E 96 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE 96 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH
Confidence 4456777777777776653 2 322211 12333333444555555555555443 22144
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHh
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m 97 (219)
..|-.+|.+|...|+..+|.++|+.+
T Consensus 97 ~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 97 EAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 55555555555555555555555554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0031 Score=41.64 Aligned_cols=72 Identities=6% Similarity=0.068 Sum_probs=38.5
Q ss_pred cCChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 84 NGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.|+++.|..+|+.+.+..- .|+...+-.+-.+|.+.|+++.|..+++. .+.+.. +....-.+-.+|.+.|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCH
Confidence 4667777777777665421 12333344456677777777777777766 222211 222222335667777777
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.34 Score=38.31 Aligned_cols=150 Identities=8% Similarity=0.013 Sum_probs=122.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCC---ChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-TPA---PPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~---~~~~~~~li~ 79 (219)
..+|..+-..|.+.|..+.|.+-|.+..+.. +-+..+.|..=..+|..|.+++|...|+..- .|. -..+|..+--
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 4678888889999999999999999988664 3355667777778899999999999998753 330 2467888888
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|..+.|+.+.|...|..-++. -|+ ..+.-.+-+-..+.|+.-.|+..++.....+. ++..+.--.|+.--+.|+-
T Consensus 148 Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccH
Confidence 999999999999999987654 233 34677778888899999999999998877765 8888888888888889988
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.11 Score=45.31 Aligned_cols=121 Identities=8% Similarity=-0.056 Sum_probs=64.4
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a 90 (219)
.|.+..+.+...+.|+...+.. +-++.+|..-=-.+.-.+++++|..=|+.-.+. -+...|--+--+.-+.++++++
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666655544 113333333333344445566666666655432 0233343333344445566777
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
...|++-.+. ++-....|+..-..+.+.++++.|...++.-++.
T Consensus 448 m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 448 MKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 7777665443 3334456666666677777777777666664443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.089 Score=45.78 Aligned_cols=153 Identities=11% Similarity=0.153 Sum_probs=119.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----hcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN----NFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~----~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
...+.+.+.++|...++ =++-..+|+..+=.+|+ +..++..|.+++.... -| ...+|...|.-=.+.++++.
T Consensus 378 e~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP-K~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP-KDKLFKGYIELELQLREFDR 455 (677)
T ss_pred HhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC-chhHHHHHHHHHHHHhhHHH
Confidence 35688899999999887 34556789988888886 4688999999998765 45 67889999999999999999
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC-CCccHHHHHHHHHHHHhcCCchhHHHHHhhhh
Q 041894 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGF 168 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~ 168 (219)
+..+|+..++-+ +-|..+|.-.-.-=...|+.+.|+.+|...++.. +..-...|.+-|+.=...|.+
T Consensus 456 cRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~----------- 523 (677)
T KOG1915|consen 456 CRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF----------- 523 (677)
T ss_pred HHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH-----------
Confidence 999999998754 3355677665555567799999999999865543 334456777777777788888
Q ss_pred ccCCcchhhHHHHhhcCCCCC
Q 041894 169 GFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~~ 189 (219)
++|+.++++..+++
T Consensus 524 -------ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 524 -------EKARALYERLLDRT 537 (677)
T ss_pred -------HHHHHHHHHHHHhc
Confidence 99999998877654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.15 Score=38.32 Aligned_cols=112 Identities=11% Similarity=0.003 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPS 111 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ 111 (219)
...+..+-..|.+.|++++|...|++.. .| + ...|..+-..+.+.|++++|...+.+..+. .|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEE-DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 3456666667777888888888887653 12 2 246777778888888888888888776653 343 334445
Q ss_pred HHHHHhcccC--------------hhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 112 VLKSCTLLVD--------------FRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 112 ll~~~~~~g~--------------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+-..+...|+ ++.|.+++....+.+ |+. |..++.-+...|+.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~~~ 167 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcCcc
Confidence 5555555555 577888888776644 443 66666666666654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.11 Score=45.78 Aligned_cols=152 Identities=9% Similarity=0.038 Sum_probs=118.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHh-cCCCCCh-hhHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLLDT-LKTPAPP-VAWKSIIRCC 81 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~-m~~~~~~-~~~~~li~~~ 81 (219)
.+|...++.--+...++.|..+|.++.+.+..+ ++++++++|.-||. ++.+-|.++|.. |+.-+|. .--+..++-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 346666777777888999999999999999888 78889999988885 568899999974 5522244 4456788888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCc--ccHHHHHHHHhcccChhhHHHHHHHHHHh-C--CCccHHHHHHHHHHHHhcCC
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDH--NVFPSVLKSCTLLVDFRFGESVHACIIRL-G--VDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--~~~~~~~~~~ll~~y~~~g~ 156 (219)
...++-..+..+|+....+++.|+. .+|..+|+.=+..|++..+.++-+.+... . ..+....-..+++.|.-.++
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 8889999999999999988888775 58999999999999999999987775433 1 23344455666777776665
Q ss_pred c
Q 041894 157 M 157 (219)
Q Consensus 157 ~ 157 (219)
.
T Consensus 526 ~ 526 (656)
T KOG1914|consen 526 Y 526 (656)
T ss_pred c
Confidence 5
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.15 Score=38.19 Aligned_cols=81 Identities=7% Similarity=-0.052 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
...|..+...+...|++++|...|+......-.|. ..++..+-..+...|+.++|...+....+.. +....++..+-
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 46678888888899999999999999765432221 2467778888899999999999998877653 33455666777
Q ss_pred HHHH
Q 041894 149 NMYA 152 (219)
Q Consensus 149 ~~y~ 152 (219)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 7777
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.03 Score=50.73 Aligned_cols=133 Identities=10% Similarity=0.051 Sum_probs=70.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-cC-CCCChhhHHHHHHHHHhcCChhHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT-LK-TPAPPVAWKSIIRCCTQNGLLVESLTC 93 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-m~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 93 (219)
+.|-.+.|..+|+++ +.|.-.|.+|+..|+.++|..+..+ ++ .| |...|..+-+......-+++|+++
T Consensus 410 slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~-d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 410 SLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDP-DPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC-cchhHHHhhhhccChHHHHHHHHH
Confidence 336666666666653 3455566666666666666666543 33 23 555555554444444444444444
Q ss_pred HHHh-HhC--C-----------------------CCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHH
Q 041894 94 FVRM-IGS--G-----------------------VYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNN 145 (219)
Q Consensus 94 ~~~m-~~~--g-----------------------~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~ 145 (219)
++.- .+. - ++|- ..+|=.+=.+..+.++.+.|...|..-+.. .| +...||
T Consensus 480 sn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWn 557 (777)
T KOG1128|consen 480 SNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWN 557 (777)
T ss_pred hhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhh
Confidence 4442 110 0 1111 123322222333556666666666554443 34 577888
Q ss_pred HHHHHHHhcCCchhH
Q 041894 146 ALMNMYAQSQNMDMH 160 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~ 160 (219)
.|-.+|.+.|+-.++
T Consensus 558 Nls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 558 NLSTAYIRLKKKKRA 572 (777)
T ss_pred hhhHHHHHHhhhHHH
Confidence 888888888888333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.15 Score=42.66 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
.+.+..|.-+...|+...|.++-.++ -.|+..-|..-|.+++..++|++-+.+-.. .-...-|...++++
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 35566677778888888887766555 258888899999999999999866664321 22347788888888
Q ss_pred HhcCCchhHH-------HHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 152 AQSQNMDMHI-------YDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 152 ~~~g~~~~~~-------~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
.+.|..+.|. ++.-..++.++|++.+|.+.--+.++
T Consensus 248 ~~~~~~~eA~~yI~k~~~~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPDEERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred HHCCCHHHHHHHHHhCChHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 8888887662 22233344578888888776555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.47 Score=43.07 Aligned_cols=175 Identities=10% Similarity=0.029 Sum_probs=129.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.||+..-..|.+.+.++-+..+|...++-- +.+...|......=-.-|..++...+|+... -|...+.|-.....+.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 577788888999999999999999887654 5567788888777777888888888888764 2325678888888899
Q ss_pred hcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
.+|+...|..++....+. .| +...|-+.++--..+..++.|+.+|..-.. ..|+..+|.--+..---.+..++++
T Consensus 596 ~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred hcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 999999999999886654 34 557888888888999999999999987655 4577777766666666666775551
Q ss_pred ----------------HHHhhhhccCCcchhhHHHHhhc
Q 041894 162 ----------------YDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 162 ----------------~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
|=++.....+-++++.|++-|..
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 11122333455666677766654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.31 Score=43.50 Aligned_cols=130 Identities=13% Similarity=0.076 Sum_probs=67.8
Q ss_pred ChhHHHHHHhCccccC-----ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc--------CCHHHHHHHHHhcC---
Q 041894 3 STKTLINLLKNPVSIK-----TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF--------NLVHDSLCLLDTLK--- 66 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~-----~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~--------g~~~~A~~~~~~m~--- 66 (219)
|..+|...+++..... +...|..+|++.++.. +-....|..+-.+|... .++..+.+......
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 4456666666543322 2556677777766553 11233333332222111 11223333333211
Q ss_pred --CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 67 --TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 67 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.. +...|-++--.....|++++|...|++..... |+...|..+-+.|...|+.++|...++.-.+..
T Consensus 415 ~~~~-~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 415 ELNV-LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cCcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 12 33555555444445577777777777766543 566667777777777777777777776655543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.12 Score=45.68 Aligned_cols=137 Identities=9% Similarity=0.071 Sum_probs=93.6
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC-----hhhHHHHHHHHHhc
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP-----PVAWKSIIRCCTQN 84 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~-----~~~~~~li~~~~~~ 84 (219)
|.+.++++.|.++|.+....- +.|+...+=+=-.....+.+.+|..+|+.-. .-.+ ..+++.|=++|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 456778888888888766332 3355555555445556777888888886542 1001 23577777888888
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
+..++|...|+.-+.. .+-|..+++++--.|...|+++.|...|.. ...+.||-.+...++..+...
T Consensus 469 ~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhK--aL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHK--ALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHH--HHhcCCccHHHHHHHHHHHHh
Confidence 8889998888886543 244677888888888888899888888764 345678887777777766554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.31 Score=44.40 Aligned_cols=162 Identities=9% Similarity=0.053 Sum_probs=112.2
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
|--..-..+-..+.+.|-.++|..+|+ -...|.-+|-+|...|+..+|..+..+-.+ -.||..-|..+.+..
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~E------rlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFE------RLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHH------hHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333344566678899999999999999 347788899999999999999999888776 478999999999988
Q ss_pred hcccChhhHHHHHHHHHHh---CCC---ccHHHHHHHHHHHHhcCCc---hhHHHHHhhhhccCCcchhhHHHHhhcCC-
Q 041894 117 TLLVDFRFGESVHACIIRL---GVD---LDLYTNNALMNMYAQSQNM---DMHIYDRFQGFGFNGGREASVHEVLDKIP- 186 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~---g~~---~~~~~~~~ll~~y~~~g~~---~~~~~~~~~~~~~~~g~~~~a~~l~~~m~- 186 (219)
.+-.-++.|-++.+..... .+- .+...|....+.+-++=.. ...+|-...-.+.++++++.|.+-|....
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 8888888888887764222 110 1112233332222211111 11122223333448889999999998765
Q ss_pred -CCCCeeehhHHHHHHhhhhH
Q 041894 187 -ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 187 -~~~~~~~~n~ll~~~~~~~~ 206 (219)
+||+...||.+=.+|.+.++
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKK 568 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhh
Confidence 56657889999999999885
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.047 Score=45.33 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=91.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhc-C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH-HHHHHHhcc
Q 041894 43 SRLLFIYNNFNLVHDSLCLLDTL-K-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP-SVLKSCTLL 119 (219)
Q Consensus 43 ~~ll~~~~~~g~~~~A~~~~~~m-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~ 119 (219)
+.|=.+|.+.|.+.+|++.|++- + .| -+.||-.|-..|.+..++..|+.+|.+-++. -|-.+||- -.-..+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 77888999999999999999764 3 44 6689999999999999999999999887654 46666653 345556667
Q ss_pred cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 120 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+..++|.+++....+.. ..++....++-..|--.|+++.+
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH
Confidence 88999999999887765 46777888888888899999544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.092 Score=44.56 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=64.1
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChh
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFR 123 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 123 (219)
......|++++|+..|++.. .|.+...|..+-.+|.+.|++++|...++..++. .| +...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 34566788888888887764 3325677777778888888888888888887653 34 3446666777778888888
Q ss_pred hHHHHHHHHHHhC
Q 041894 124 FGESVHACIIRLG 136 (219)
Q Consensus 124 ~a~~~~~~m~~~g 136 (219)
.|...++...+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888777654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.4 Score=45.42 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=73.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh--------
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP-------- 71 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~-------- 71 (219)
+...+-.|+..+-..++++.|.++.+...+.. -.+....+..+ .+.+.++.+++..+ .-.. .. +.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv-~~l~~~~~-~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL-NLIDSFSQ-NLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh-hhhhhccc-ccchhHHHHH
Confidence 34567778888878888888888877554432 11222222332 56666666665555 2211 11 11
Q ss_pred -----------hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 72 -----------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 72 -----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.++-.+-.+|-+.|+.++|..+|++.++-. .=|....|-+-..|+.. +++.|+++....+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 344445566666677777777777766554 22445566666666666 777777666655443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.056 Score=39.38 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHH-----HhCCCccHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-----RLGVDLDLYTNN 145 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~~~ 145 (219)
.+...++..+...|++++|.++........ +.|...|..+|.++...|+...|.++++.+. ..|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345567777888999999999999987653 4578899999999999999999999988854 469988865543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.49 Score=44.07 Aligned_cols=146 Identities=13% Similarity=0.081 Sum_probs=112.9
Q ss_pred hCccccCChhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC-C--ChhhHHHHHHHHHhcCC
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEPN--SRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-A--PPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~--~~~~~~~li~~~~~~g~ 86 (219)
-++.+....+..+.+.....+..+.| +...|.-+-.+|...|++++|..+|..+... + +...|--+-.+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 35666777777787888777777444 5567899999999999999999999998621 1 56789999999999999
Q ss_pred hhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHH--------HHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 87 LVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACI--------IRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m--------~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.++|.+.|...+.. .|+ ...=.+|-.-+-+.|+.++|.++++.+ ...+..|+...-.-....|.+.|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 99999999987764 454 344455666677899999999999884 3445666777777777788888887
Q ss_pred hh
Q 041894 158 DM 159 (219)
Q Consensus 158 ~~ 159 (219)
+.
T Consensus 543 E~ 544 (895)
T KOG2076|consen 543 EE 544 (895)
T ss_pred HH
Confidence 43
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.4 Score=45.58 Aligned_cols=145 Identities=11% Similarity=0.115 Sum_probs=102.3
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----------------
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---------------- 66 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---------------- 66 (219)
|+..|..++..+.+.|.+++-.+.+...++..-+|... +.||-+|++.+++.+-++++..=.
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhh
Confidence 57889999999999999999998887777776666554 789999999999888777654211
Q ss_pred -------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc
Q 041894 67 -------TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139 (219)
Q Consensus 67 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 139 (219)
-. ++.-|..|-..+...|+++.|..-- ++. -+..||.-+-.+|...+.++.|. |-...+..
T Consensus 1210 y~aAkl~y~-~vSN~a~La~TLV~LgeyQ~AVD~a---RKA---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iiv 1277 (1666)
T KOG0985|consen 1210 YEAAKLLYS-NVSNFAKLASTLVYLGEYQGAVDAA---RKA---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIV 1277 (1666)
T ss_pred hHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHh---hhc---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEE
Confidence 01 4455666777777777777776433 222 35678888888888777776443 33334445
Q ss_pred cHHHHHHHHHHHHhcCCchhHH
Q 041894 140 DLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 140 ~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
...-..-|++.|-..|-+++.|
T Consensus 1278 hadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1278 HADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred ehHhHHHHHHHHHhcCcHHHHH
Confidence 5566777888888888886554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.61 Score=33.63 Aligned_cols=127 Identities=8% Similarity=0.063 Sum_probs=90.0
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~ 86 (219)
...++..+.+.+.......+++.+.+.+ ..+...++.++..|++.. .+.....+.. .. +......+++-|.+.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~-~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KS-NHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--cc-ccCCHHHHHHHHHHcCc
Confidence 4567777877889999999999998887 467888999999999864 4455555552 34 55666778888988888
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc-cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL-VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
++++..++..+. -|.-.++.+... ++.+.|.+....- .+...|..++..+..
T Consensus 85 ~~~~~~l~~k~~---------~~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 85 YEEAVELYKKDG---------NFKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHhhc---------CHHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 888888887752 133344444444 7788777776641 255577777776654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.058 Score=33.35 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=19.9
Q ss_pred HhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 041894 49 YNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 97 (219)
+.+.|++++|...|++.. .|.+...|..+-.++...|++++|..+|++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444432 1212333444444444444444444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.25 Score=43.73 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=93.0
Q ss_pred HhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCCCcccHHHHHHHHhccc
Q 041894 49 YNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g 120 (219)
|.+.++.+.|.++|.+.- .|.|+...+=+=--....+.+.+|..+|+.-+.. ......-+++.|=.+|.+.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 355667777777776643 2325555555444444457788888888875521 11123446777778888999
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHH
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGL 198 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll 198 (219)
..++|...++.-.... +-|..++.++=-.|...|.+ +.|.+.|.+-. .|+ ..+-..+|
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnl------------------d~Aid~fhKaL~l~p~-n~~~~~lL 529 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNL------------------DKAIDHFHKALALKPD-NIFISELL 529 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcCh------------------HHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 9999999998876654 45777888888888999999 99999998755 556 45566666
Q ss_pred HHHhhh
Q 041894 199 AGCNKF 204 (219)
Q Consensus 199 ~~~~~~ 204 (219)
.-+...
T Consensus 530 ~~aie~ 535 (611)
T KOG1173|consen 530 KLAIED 535 (611)
T ss_pred HHHHHh
Confidence 655444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.44 Score=45.32 Aligned_cols=150 Identities=10% Similarity=0.149 Sum_probs=104.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
..+-+++|..+|..- ..+....+.||. ..+.++.|.++-+...+| ..|+.+-.+-.+.|...+|.+-|-
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p---~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP---AVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh---HHHHHHHHHHHhcCchHHHHHHHH
Confidence 334455565555543 233444444443 456778887777777777 789999999999999999987763
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-HH---------HHh
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH-IY---------DRF 165 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~-~~---------~~~ 165 (219)
. . -|...|.-+++.+.+.|.+++-...+.+..+..-+|. +-+.||-+|++.+++.+. -| +.+
T Consensus 1129 k---a---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1129 K---A---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQV 1200 (1666)
T ss_pred h---c---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHH
Confidence 3 1 3677899999999999999999998887766654554 567899999999998433 11 112
Q ss_pred hhhccCCcchhhHHHHhhc
Q 041894 166 QGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 166 ~~~~~~~g~~~~a~~l~~~ 184 (219)
..-++.+|+.+.|.=+|..
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHH
Confidence 2334567777777666654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.22 Score=35.39 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=22.8
Q ss_pred hcCChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHhcccChhhHHHHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLLVDFRFGESVHACII 133 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 133 (219)
..|+.++|..+|++-...|.... ...+--+-+.+...|+.++|..+++...
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555444443322 1233333444444455555555554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.51 Score=39.06 Aligned_cols=149 Identities=11% Similarity=0.140 Sum_probs=96.5
Q ss_pred hHHHHHHhCccc--cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cC----CHHHHHHHHHhcC-------CCC
Q 041894 5 KTLINLLKNPVS--IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN--FN----LVHDSLCLLDTLK-------TPA 69 (219)
Q Consensus 5 ~~~~~ll~~~~~--~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~m~-------~~~ 69 (219)
.++.++|..-.. -..++....+++.|++.|+..+.++|-+....... .. ....|..+++.|+ .+
T Consensus 61 ~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~- 139 (297)
T PF13170_consen 61 FILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP- 139 (297)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc-
Confidence 344455544333 11356677899999999999998888664444433 22 3577899999997 23
Q ss_pred ChhhHHHHHHHHHhcCC----hhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcc-cC--hhhHHHHHHHHHHhCCCccH
Q 041894 70 PPVAWKSIIRCCTQNGL----LVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLL-VD--FRFGESVHACIIRLGVDLDL 141 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~-g~--~~~a~~~~~~m~~~g~~~~~ 141 (219)
+-+++.+++.. ...+ .+.+..+|+.+.+.|+..+.. -+.+-+-+++.. .. ...+..+++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 55667777655 2223 367788898888888887654 333333333322 22 44677889999999999887
Q ss_pred HHHHHHHHHHHhcCCc
Q 041894 142 YTNNALMNMYAQSQNM 157 (219)
Q Consensus 142 ~~~~~ll~~y~~~g~~ 157 (219)
..|.. +..++-.++.
T Consensus 218 ~~yp~-lGlLall~~~ 232 (297)
T PF13170_consen 218 MHYPT-LGLLALLEDP 232 (297)
T ss_pred ccccH-HHHHHhcCCc
Confidence 77665 5555555555
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.5 Score=36.68 Aligned_cols=146 Identities=10% Similarity=0.026 Sum_probs=98.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
++..+-..+...+..++|..+.+++++.. +-+..+|+..=..+.+.| ++++++..++.+. .|.+..+|+---..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 34444455566788999999999998764 223345554444455556 6799999998765 2326667776555555
Q ss_pred hcCCh--hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 83 QNGLL--VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 83 ~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
+.|.. ++++.+++.+.+.. +=|...|+---..+...|+++++.+.++.+.+..+ .|...|+-.--.+.+.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRS 189 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhc
Confidence 56653 67788888887542 22566788878888888999999999999988874 4455666655444444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.19 Score=46.12 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
|.-+-+.|...|+++.|.++|.+- .-|+-.|..|.+.|.+++|.++-. .-.|.+....+|-+--.-+-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~--e~~~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAE--ECHGPEATISLYIAKAEDLDE 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHH--HhcCchhHHHHHHHhHHhHHh
Confidence 444445555555555555555331 123344555555555555544422 122333334444444444444
Q ss_pred cCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 154 SQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 154 ~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
.|++ .+|++++-.+.+|+
T Consensus 837 hgkf------------------~eaeqlyiti~~p~ 854 (1636)
T KOG3616|consen 837 HGKF------------------AEAEQLYITIGEPD 854 (1636)
T ss_pred hcch------------------hhhhheeEEccCch
Confidence 4444 88888888877776
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.96 Score=40.47 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=106.0
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHH--HHHHH--hc
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSI--IRCCT--QN 84 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~l--i~~~~--~~ 84 (219)
+=|+-+.+.+++++|.+.-++++..+ +-+...+..=+-+..+.+.+++|+.+.+.-... .+++.. =.+|| +.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHc
Confidence 34566778889999999999998877 545666777777888999999999776644321 334444 34444 46
Q ss_pred CChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhcCC-chhH-
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQN-MDMH- 160 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y~~~g~-~~~~- 160 (219)
+.+++|+..++ |..++.. +...=-..|-+.|++++|..+++.+.+++... +...=..++.+-..+.- +...
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 78888888776 4555443 55555567788899999999999998877532 22222222222221111 1111
Q ss_pred ------HHHHhhhhcc---CCcchhhHHHHhhcC
Q 041894 161 ------IYDRFQGFGF---NGGREASVHEVLDKI 185 (219)
Q Consensus 161 ------~~~~~~~~~~---~~g~~~~a~~l~~~m 185 (219)
.|+-+=..+| .+|++.+|++++++-
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1222222223 578889999999876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.3 Score=40.46 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=21.7
Q ss_pred CcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhh
Q 041894 172 GGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~ 205 (219)
-|.+-+|+.+|++-+ .|.+...|=..|..=.+.|
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAG 767 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence 334488888888655 3332566777777666666
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.39 Score=39.00 Aligned_cols=95 Identities=11% Similarity=-0.000 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----ccc
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP----VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD----HNV 108 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t 108 (219)
...|...+..+.+.|++++|...|+.+. .| +. .++--+-..|...|++++|...|..+.+.- |+ ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHH
Confidence 3457777777777899999999998876 45 43 355566688888999999999999987542 32 223
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 109 FPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 109 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+--+...+...|+.+.|..+++.+.+.-
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3334556678899999999999887765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.48 Score=33.64 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=50.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hh-hHHHHHHHHHhcC
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSR--FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PV-AWKSIIRCCTQNG 85 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~-~~~~li~~~~~~g 85 (219)
+-..|+.++|..+|.+....|+.... ..+-.+=+.|-..|++++|..+|++.. .| + .. ..-.+--++...|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHHCC
Confidence 44557788888888888877765432 234445556677778888887776653 23 3 11 1111223556667
Q ss_pred ChhHHHHHHHHhH
Q 041894 86 LLVESLTCFVRMI 98 (219)
Q Consensus 86 ~~~~a~~~~~~m~ 98 (219)
++++|.+.+-.-.
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 7777777765543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.68 Score=38.27 Aligned_cols=141 Identities=9% Similarity=-0.052 Sum_probs=95.2
Q ss_pred ccccCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC----------------Ch-----
Q 041894 14 PVSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA----------------PP----- 71 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----------------~~----- 71 (219)
..+.|+++.|.+-|+...+. |++| ...||..+- ..+.|+.+.|++...++.++| |+
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 46889999999999988875 4765 556776664 456788999998887663110 21
Q ss_pred ---hhHHHHHHHH-------HhcCChhHHHHHHHHhH-hCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc
Q 041894 72 ---VAWKSIIRCC-------TQNGLLVESLTCFVRMI-GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140 (219)
Q Consensus 72 ---~~~~~li~~~-------~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 140 (219)
..-+.++.++ .+.|+.+.|.+-+.+|. +..-..|.+|...+--.- -.+++..+.+-++.+..... --
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 1234455544 45689999999999986 444567888877642222 22445566666666665543 34
Q ss_pred HHHHHHHHHHHHhcCCch
Q 041894 141 LYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 141 ~~~~~~ll~~y~~~g~~~ 158 (219)
..|+..++-.||+..-++
T Consensus 310 ~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFD 327 (459)
T ss_pred hHHHHHHHHHHhhhHHHh
Confidence 668999999999998884
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.42 Score=35.11 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=47.5
Q ss_pred HHcCCCCcHH--HHHHHHHHHhhcCCHHHHHHHHHhcC---------CCCChhhHHHHHHHHHhcCC-hhHHHHHHHHhH
Q 041894 31 FKTLEPNSRF--LISRLLFIYNNFNLVHDSLCLLDTLK---------TPAPPVAWKSIIRCCTQNGL-LVESLTCFVRMI 98 (219)
Q Consensus 31 ~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~---------~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 98 (219)
.+.+..++.. ..|.+|......+++.....+++.+. .. +...|++++.+..+..- ---++.+|.-|.
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~-~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWL-DNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhc-ccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3334444432 34666666666666666666665553 12 34556666666654443 234455555555
Q ss_pred hCCCCCCcccHHHHHHHHhcc
Q 041894 99 GSGVYPDHNVFPSVLKSCTLL 119 (219)
Q Consensus 99 ~~g~~p~~~t~~~ll~~~~~~ 119 (219)
+.+.+++..-|..+|++|.+-
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 555566666666666665553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.28 Score=41.37 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=55.6
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCC--ChhhHHHHH-HHHHhcCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhcccCh
Q 041894 47 FIYNNFNLVHDSLCLLDTLKTPA--PPVAWKSII-RCCTQNGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCTLLVDF 122 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~ 122 (219)
.+++..|...+|+++|-.+..|. |..+|.+++ ++|.+.+.++.|+++|-.+-- +.+.. ....+-+-|-+.+.+
T Consensus 401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777666431 456666655 677777888887766544421 11222 233445667777777
Q ss_pred hhHHHHHHHHHHhCCCc
Q 041894 123 RFGESVHACIIRLGVDL 139 (219)
Q Consensus 123 ~~a~~~~~~m~~~g~~~ 139 (219)
=.|-..|+++......|
T Consensus 478 yyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 478 YYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhhhHHHccCCCc
Confidence 77777787777765444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.9 Score=36.11 Aligned_cols=173 Identities=9% Similarity=0.019 Sum_probs=107.1
Q ss_pred CccccC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC--HHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCC
Q 041894 13 NPVSIK-TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 13 ~~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~--~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~ 86 (219)
.+.+.+ +++.+...++.+.+.. +-+..+|+..--.+.+.|. .+++..+++.+- .. |..+|+-.-..+.+.|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhh
Confidence 334445 5789999999998776 3355567655444555554 256777776654 44 78899998899999999
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc---cCh----hhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL---VDF----RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~----~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
++++++.++++.+.... |...|+-......+. |.. +.........++.. +-|...|+-+-..|...++.
T Consensus 158 ~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~-- 233 (320)
T PLN02789 158 WEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEA-- 233 (320)
T ss_pred HHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcc--
Confidence 99999999999876532 344555544444433 222 33445554555543 35678888888888773321
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHhh
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCNK 203 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~~ 203 (219)
.+.-.+|.+++.+....+ .+.....+++.|+.
T Consensus 234 ------------l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 234 ------------LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ------------cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 011155666666543322 03345556666654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.1 Score=33.31 Aligned_cols=93 Identities=10% Similarity=0.100 Sum_probs=70.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 119 (219)
.-.+=..+...|++++|.++|+.+. .|-+..-|-.|=-++-..|++++|...|.....-. +=|...+-.+=.++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 3344455678999999999999876 33155667777778888899999999998876544 22455666677888899
Q ss_pred cChhhHHHHHHHHHHh
Q 041894 120 VDFRFGESVHACIIRL 135 (219)
Q Consensus 120 g~~~~a~~~~~~m~~~ 135 (219)
|+.+.|++.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999876544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.25 Score=42.75 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=95.9
Q ss_pred cccCChhHHHHHHHHHHHcCC----CCc-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHH--hcCCh
Q 041894 15 VSIKTKSQAKQLHAQIFKTLE----PNS-RFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT--QNGLL 87 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~----~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~--~~g~~ 87 (219)
-+.+++.+++++|.++.+..- .-. ...-+.+|++|...+ ++.-...+..+++......|-.+..+.. +.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 467899999999999876541 112 234578899998766 4444444444442102345666655543 34778
Q ss_pred hHHHHHHHHhHhC--CCCCC------------cccHHHHHHHHhcccChhhHHHHHHHHHHhCCC----ccHHHHHHHHH
Q 041894 88 VESLTCFVRMIGS--GVYPD------------HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD----LDLYTNNALMN 149 (219)
Q Consensus 88 ~~a~~~~~~m~~~--g~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~ 149 (219)
++|.+.+..-... +-.|. ..-=+....+....|.+.+|+.+++.|...=++ ++..+||.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888888776544 32222 122244667788999999999999988765444 89999999998
Q ss_pred HHHhcCCchh
Q 041894 150 MYAQSQNMDM 159 (219)
Q Consensus 150 ~y~~~g~~~~ 159 (219)
+++|+=-++.
T Consensus 176 mlsrSYfLEl 185 (549)
T PF07079_consen 176 MLSRSYFLEL 185 (549)
T ss_pred HHhHHHHHHH
Confidence 8988766644
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.4 Score=37.20 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=105.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHH---HHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHH---HHHHhcCChh
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRL---LFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSII---RCCTQNGLLV 88 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~l---l~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li---~~~~~~g~~~ 88 (219)
.|++..|+.-|...++. |+..|-++ -..|...|+.+.|+.=|...- .| |. +.+-| .-+.+.|.++
T Consensus 51 ~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp-DF--~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP-DF--MAARIQRGVVLLKQGELE 123 (504)
T ss_pred hhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc-cH--HHHHHHhchhhhhcccHH
Confidence 45555665555555433 33333333 335555565555554443322 23 32 22222 2356789999
Q ss_pred HHHHHHHHhHhCCCCCCcc----------------cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 89 ESLTCFVRMIGSGVYPDHN----------------VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~----------------t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
+|..=|+..++.. |+.. .....+..+.-.|+...+......+.+-. .+|...|-.=-++|.
T Consensus 124 ~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 124 QAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 9999998887652 3221 12234556667789988888888887754 467777777789999
Q ss_pred hcCCchhHHHHH----------------hhhhccCCcchhhHHHHhhcCCCCC
Q 041894 153 QSQNMDMHIYDR----------------FQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 153 ~~g~~~~~~~~~----------------~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
..|+++.||.++ |...++.-||.+.++..++++.+-|
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 999999997655 6677889999999999998877543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.43 Score=35.50 Aligned_cols=84 Identities=11% Similarity=-0.029 Sum_probs=68.6
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
+.+.|+++.|+.+|..+..... -+..-|-.|=.++-..|++++|...+...- .|.|..++=.+=.++...|+.+.|.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 4677999999999999987763 355556677778888999999999998653 3327788888889999999999999
Q ss_pred HHHHHhH
Q 041894 92 TCFVRMI 98 (219)
Q Consensus 92 ~~~~~m~ 98 (219)
+-|+.-.
T Consensus 124 ~aF~~Ai 130 (157)
T PRK15363 124 KALKAVV 130 (157)
T ss_pred HHHHHHH
Confidence 9998754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.29 Score=45.04 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=109.8
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~ 92 (219)
+-.....++.|.-+++.+..... -..-|.-+-..|+..|+++.|+++|-+ .-.++-.|..|.++|++.+|++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e------~~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE------ADLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh------cchhHHHHHHHhccccHHHHHH
Confidence 34455567777777776654432 233477888899999999999999973 3457888999999999999998
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH-----------
Q 041894 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI----------- 161 (219)
Q Consensus 93 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~----------- 161 (219)
+-.+. .|-+.....|-+=-.-.-..|.+.+|++++-.+ | .|+. -|.+|-+.|..++++
T Consensus 813 la~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 87654 233344555666556666778888888886554 2 4553 377888888886553
Q ss_pred HHH---hhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 162 YDR---FQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 162 ~~~---~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
.++ +.--+...|++..|++-|-+- .-|.+.++-|-.++
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea------~d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEA------GDFKAAVNMYKASE 922 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhh------hhHHHHHHHhhhhh
Confidence 111 222234567777777665442 23445555554444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=2.1 Score=40.70 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=113.9
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCC
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~ 86 (219)
.++.......++...+.+.+.|...+ -+...+-.+-.+|-+.|+.++|..+|+++- .|.|..+.|.+-..|... +
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h
Confidence 56666666667767777777776643 345678888999999999999999999875 233789999999999999 9
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR 164 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~ 164 (219)
+++|.+++..-... +.....+..+..+|..+..+.. .|...+--+++....+-.+... .+.-
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 99999998886544 5555677777777777766542 2222222222222222112111 2333
Q ss_pred hhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHh
Q 041894 165 FQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCN 202 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~ 202 (219)
+-+++-.+.+++++.++|+.+.+.+ +.....-++..|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344445566699999998877542 1444444555554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.5 Score=41.08 Aligned_cols=114 Identities=10% Similarity=0.058 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChhHHHHHHHH-hHhCCCCCCccc-HHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAPPVAWKSIIRCCTQNGLLVESLTCFVR-MIGSGVYPDHNV-FPS 111 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~t-~~~ 111 (219)
..+|..+|+..-+..-++.|+.+|.+.+ .+ ++..++++|.-++. |++.-|.++|+- |+.- ||.-. -.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h-~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGH-HVYIYCAFIEYYAT-GDRATAYNIFELGLLKF---PDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCc-ceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC---CCchHHHHH
Confidence 4567788888888888999999998876 45 78889999988875 788889988866 4332 44433 345
Q ss_pred HHHHHhcccChhhHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCCch
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRLGVDLD--LYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~y~~~g~~~ 158 (219)
.+..+.+.++-+.|+.+|+.-+.+ +.-+ ...|..+|+-=.+-|++-
T Consensus 472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchH
Confidence 677778889999999998854332 2222 567888887777777773
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.17 Score=31.16 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=47.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
-..+...|++++|.+.|++.++.. | +...+..+-.++...|++++|...++...+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356788999999999999998875 5 45677788888899999999999999987654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.7 Score=38.84 Aligned_cols=134 Identities=9% Similarity=-0.021 Sum_probs=88.4
Q ss_pred cCCCCcHHHHHHHHHHHhhcC-----CHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcC--------ChhHHHHHHHHh
Q 041894 33 TLEPNSRFLISRLLFIYNNFN-----LVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNG--------LLVESLTCFVRM 97 (219)
Q Consensus 33 ~g~~~~~~~~~~ll~~~~~~g-----~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m 97 (219)
.+.+.+...|...+.+..... +.+.|..+|++.. .|.....|..+-.++.... +...+.+.....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345678889999999865432 3778999998875 4523455555444333221 122333333322
Q ss_pred HhC-CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchh
Q 041894 98 IGS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREA 176 (219)
Q Consensus 98 ~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~ 176 (219)
... ....+...|.++--.....|++++|...++...... |+...|..+-..+...|+. +
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~------------------~ 470 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDN------------------R 470 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCH------------------H
Confidence 221 122334566665444455799999999999988876 6788999999999999999 9
Q ss_pred hHHHHhhcCC
Q 041894 177 SVHEVLDKIP 186 (219)
Q Consensus 177 ~a~~l~~~m~ 186 (219)
+|.+.+++-.
T Consensus 471 eA~~~~~~A~ 480 (517)
T PRK10153 471 LAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHH
Confidence 9999998754
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.7 Score=34.82 Aligned_cols=106 Identities=12% Similarity=0.159 Sum_probs=65.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHH-HHHHHHhCCCccHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV-HACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~ll 148 (219)
+...|..+|+.+.+.|++.. +..+.+.++-||.......+-.... ....+.++ ++++.+.+. .+..++
T Consensus 28 ~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~-----~~~~ii 96 (167)
T PF07035_consen 28 QHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT-----AYEEII 96 (167)
T ss_pred CHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh-----hHHHHH
Confidence 55677777777777776543 4466666777776666655544432 33444555 444444442 345566
Q ss_pred HHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 149 ~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
+.+...|++ -+|.++.+.....+ .+....++.+-.+.+
T Consensus 97 evLL~~g~v------------------l~ALr~ar~~~~~~-~~~~~~fLeAA~~~~ 134 (167)
T PF07035_consen 97 EVLLSKGQV------------------LEALRYARQYHKVD-SVPARKFLEAAANSN 134 (167)
T ss_pred HHHHhCCCH------------------HHHHHHHHHcCCcc-cCCHHHHHHHHHHcC
Confidence 677777777 99999998865554 455566666655554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.3 Score=39.96 Aligned_cols=87 Identities=8% Similarity=-0.033 Sum_probs=52.9
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChhHHHHHHHH
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQN-GLLVESLTCFVR 96 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~ 96 (219)
+..+-...-+..|.+.|++.|..+|+.||+.+=+-.-.- -|.+-.-|... .+-+=+..++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP-----------------~nvfQ~~F~HYP~QQ~C~I~vLeq 148 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP-----------------QNVFQKVFLHYPQQQNCAIKVLEQ 148 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc-----------------HHHHHHHHhhCchhhhHHHHHHHH
Confidence 445555556667777777777777777776554432211 11111111111 123445678888
Q ss_pred hHhCCCCCCcccHHHHHHHHhcccC
Q 041894 97 MIGSGVYPDHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 97 m~~~g~~p~~~t~~~ll~~~~~~g~ 121 (219)
|...|+.||..+=..|++++++.+-
T Consensus 149 ME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 149 MEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHcCCCCchHHHHHHHHHhccccc
Confidence 8888888888888888888887654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.19 Score=31.29 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcC-ChhHHHHHHHHh
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNG-LLVESLTCFVRM 97 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m 97 (219)
.+|..+=..+.+.|++++|+..|.+.. .|.+...|..+=.+|...| ++++|.+.|+.-
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344455555555666666666655432 2213455555555555555 466666555543
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.2 Score=34.91 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
+..+...+.+.|++++|.++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.54 Score=40.91 Aligned_cols=84 Identities=7% Similarity=0.028 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH-HHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT-NNALM 148 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~ll 148 (219)
+.+|-+.|++-.+..-++.|..+|.+.++.| +.++.++++++|..++. |+...|..+|+.=.+. + ||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f-~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-F-PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-C-CCchHHHHHHH
Confidence 4678889999999888999999999999998 67999999999999985 7788888888752222 2 33222 23445
Q ss_pred HHHHhcCCc
Q 041894 149 NMYAQSQNM 157 (219)
Q Consensus 149 ~~y~~~g~~ 157 (219)
..+.+.++-
T Consensus 474 ~fLi~inde 482 (660)
T COG5107 474 LFLIRINDE 482 (660)
T ss_pred HHHHHhCcH
Confidence 556666665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.29 Score=30.43 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhccc-ChhhHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLV-DFRFGESVHACII 133 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~m~ 133 (219)
.+|..+=..+...|++++|...|.+..+. .|+ ...|..+-.+|...| ++++|.+.++...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 44445555555555555555555554432 232 234444444444555 4555555554443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.2 Score=36.29 Aligned_cols=100 Identities=11% Similarity=0.042 Sum_probs=72.2
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hhhHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PVAWKSI 77 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~~~~~l 77 (219)
..|...+.-..+.|+++.|...|+..++..-... ...+--+-..|...|++++|...|..+. .|.+ ..++-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555544566999999999999987642211 2456677778899999999999999885 3412 2344445
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCc
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 106 (219)
...+...|+.++|..+|++..+. -|+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 66777899999999999998765 3554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.18 Score=32.29 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
.+++.+-..|...|++++|.++|++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444555555555555555443
|
... |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.45 E-value=2.6 Score=37.14 Aligned_cols=148 Identities=10% Similarity=-0.011 Sum_probs=106.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.|+.-.+...|+..++..-.++. .|=.+-..|....+.++-...|+.... |-|+.+|--==+-+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 47788889999998887644333 144455568888888888888887652 215556655445555556788888777
Q ss_pred HHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCc
Q 041894 95 VRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGG 173 (219)
Q Consensus 95 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g 173 (219)
++-.+ +.|. ...|.-+-.+.-+.+.++.++..|++.++. ++....+||-.-..+...+++
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF---------------- 478 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF---------------- 478 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH----------------
Confidence 76544 3453 344544444445888999999999998665 677788999999999999999
Q ss_pred chhhHHHHhhcCC
Q 041894 174 REASVHEVLDKIP 186 (219)
Q Consensus 174 ~~~~a~~l~~~m~ 186 (219)
++|.+.|+...
T Consensus 479 --d~A~k~YD~ai 489 (606)
T KOG0547|consen 479 --DKAVKQYDKAI 489 (606)
T ss_pred --HHHHHHHHHHH
Confidence 99999998755
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.77 Score=37.93 Aligned_cols=123 Identities=14% Similarity=0.015 Sum_probs=84.9
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCC-------------CcHH--------HHHHHHHH-------HhhcCCHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-------------NSRF--------LISRLLFI-------YNNFNLVH 56 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-------------~~~~--------~~~~ll~~-------~~~~g~~~ 56 (219)
.+||..|- ..+.++..+|.++.++++++|+. ||+. .-+.++.+ +.+.|+.+
T Consensus 180 lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 180 LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 46777664 45789999999999999999864 2221 12334433 46789999
Q ss_pred HHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHH
Q 041894 57 DSLCLLDTLKTPA----PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 57 ~A~~~~~~m~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
.|.+.+-.|+.+. |++|...+--.= -.+++.+.++-+.-+++- .| -..||..++--||+..-++.|-.++.+
T Consensus 259 AA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 259 AAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 9999999998431 666654432211 235666666666555443 44 346999999999999999999888765
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.055 Score=39.31 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=63.8
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~ 88 (219)
.+++.+.+.+.++....+++.+.+.+-..+....+.++..|++.+..+...++++. . +..-...+++.|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~---~-~~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT---S-NNYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS---S-SSS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc---c-cccCHHHHHHHHHhcchHH
Confidence 35677777888888888888888777667788889999999999887888887773 2 3344566777777888888
Q ss_pred HHHHHHHHhH
Q 041894 89 ESLTCFVRMI 98 (219)
Q Consensus 89 ~a~~~~~~m~ 98 (219)
+|.-+|..+.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8877776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=2.1 Score=36.35 Aligned_cols=145 Identities=11% Similarity=0.139 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhHHHHH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFL-ISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVESLTC 93 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~a~~~ 93 (219)
.++.|++.|+..-.++..-|+.. -.++-+.+.-..++++++..++.++ .. |..-|| +-++++.-|++.+|.++
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd-D~Fn~N-~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND-DDFNLN-LAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhhH-HHHHHHHhcChHHHHHH
Confidence 35566666666655554433322 2334444445556666666666665 22 344343 55677777778888777
Q ss_pred HHHhHhCCCCCCcccHHHHH-HHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH-HHHHhcCCchhHHHHHhhhhccC
Q 041894 94 FVRMIGSGVYPDHNVFPSVL-KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM-NMYAQSQNMDMHIYDRFQGFGFN 171 (219)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~y~~~g~~~~~~~~~~~~~~~~ 171 (219)
|-......+ -|..+|.+++ ++|.+.+..+.| |+.|.+..-..+..+.--|| .-+-+.+.+
T Consensus 416 f~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lA---W~~~lk~~t~~e~fsLLqlIAn~CYk~~eF-------------- 477 (557)
T KOG3785|consen 416 FIRISGPEI-KNKILYKSMLARCYIRNKKPQLA---WDMMLKTNTPSERFSLLQLIANDCYKANEF-------------- 477 (557)
T ss_pred HhhhcChhh-hhhHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchhHHHHHHHHHHHHHHHHHH--------------
Confidence 755433332 3445555544 455677777644 44455544444444444444 233345555
Q ss_pred CcchhhHHHHhhcCCC
Q 041894 172 GGREASVHEVLDKIPE 187 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~~ 187 (219)
--|-+-|+.++.
T Consensus 478 ----yyaaKAFd~lE~ 489 (557)
T KOG3785|consen 478 ----YYAAKAFDELEI 489 (557)
T ss_pred ----HHHHHhhhHHHc
Confidence 667777776663
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.2 Score=41.60 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=65.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH--hhcCCHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIY--NNFNLVHDSLCLLDTLKTPA--PPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..++++.|....+++.+. .|+.. |...+.++ .|.|..++|..+++....++ |..|..++-.+|...|++++|.
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 445666666666655443 23322 33334433 45666677776666554221 5666677777777777777777
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
.+|++..+ .-|+..-...+..+|.+.+.+..-.++-=+|-+
T Consensus 98 ~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 98 HLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766543 346666666666777766666555554333433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.2 Score=37.13 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=76.5
Q ss_pred HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc
Q 041894 32 KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-----VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 32 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 106 (219)
..|...+..+...++.--....+++.++..+-.++...+. .+--++++-+.+ -+++++..++..=..-|+=||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3455556666777777777788899999988888732121 222334555554 5799999999888888999999
Q ss_pred ccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 107 NVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 107 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.+++.+|+.+.+.+++.+|-++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999885555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.59 Score=29.30 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=31.2
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+.|.+.+++++|.++++.+.+.. +-+...+...-..+.+.|+++.|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34555666666666666655432 1133344444555556666666666666655544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=2.6 Score=40.12 Aligned_cols=144 Identities=8% Similarity=-0.018 Sum_probs=90.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHhcC----CCC--C--hhhHHHHHHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSR----FLISRLLFIYNNFNLVHDSLCLLDTLK----TPA--P--PVAWKSIIRCC 81 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~--~--~~~~~~li~~~ 81 (219)
+...|+++.|...++...+.--..+. ...+.+-..+...|++++|...+.+.. ..+ . ..+++.+-..+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 45688999999999987763211122 234555556778999999998887653 110 1 23445556677
Q ss_pred HhcCChhHHHHHHHHhHh----CCCC--C-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCccHHHHHHHHHH
Q 041894 82 TQNGLLVESLTCFVRMIG----SGVY--P-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDLDLYTNNALMNM 150 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~ 150 (219)
...|++++|...+++... .+.. | ....+..+-..+...|+++.|...+...... +.......+..+-..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999999888643 2221 1 1222334444556679999999888775432 211123344445567
Q ss_pred HHhcCCc
Q 041894 151 YAQSQNM 157 (219)
Q Consensus 151 y~~~g~~ 157 (219)
+...|+.
T Consensus 622 ~~~~G~~ 628 (903)
T PRK04841 622 SLARGDL 628 (903)
T ss_pred HHHcCCH
Confidence 7788888
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.13 E-value=2.3 Score=30.50 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=79.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc
Q 041894 43 SRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 43 ~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 120 (219)
..++..+...+..+.+..+++.+... .+....|.+|..|++. +.++..+.+.. .++.+....+++.|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45667777777788888887776422 1456788888888876 35555555542 245566667888888888
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc-CCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHH
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS-QNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLA 199 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~-g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~ 199 (219)
.++.+..++..+ |. |.-.+..+... +++ +.|.+++.+- .+ ...|..++.
T Consensus 84 l~~~~~~l~~k~---~~------~~~Al~~~l~~~~d~------------------~~a~~~~~~~--~~-~~lw~~~~~ 133 (140)
T smart00299 84 LYEEAVELYKKD---GN------FKDAIVTLIEHLGNY------------------EKAIEYFVKQ--NN-PELWAEVLK 133 (140)
T ss_pred cHHHHHHHHHhh---cC------HHHHHHHHHHcccCH------------------HHHHHHHHhC--CC-HHHHHHHHH
Confidence 887777776654 21 11223333333 667 9999988873 24 567777777
Q ss_pred HHhh
Q 041894 200 GCNK 203 (219)
Q Consensus 200 ~~~~ 203 (219)
.+..
T Consensus 134 ~~l~ 137 (140)
T smart00299 134 ALLD 137 (140)
T ss_pred HHHc
Confidence 6653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.6 Score=39.61 Aligned_cols=110 Identities=10% Similarity=0.121 Sum_probs=66.7
Q ss_pred HHHHHhCc--cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 7 LINLLKNP--VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 7 ~~~ll~~~--~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
|..+++++ .+.|..+.|..+++.....+.. |..|...+-.+|-..+++++|..+++... .| +......+.-+|.
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P-~eell~~lFmayv 121 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP-SEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC-cHHHHHHHHHHHH
Confidence 44445543 4667777777777766555534 77777777777777888888877777765 34 4455555666666
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcc
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLL 119 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 119 (219)
+.+++.+-.+.=-+|.+. ++-+.+.|-++++-..+.
T Consensus 122 R~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHh
Confidence 666655444333333332 233456677777666543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.3 Score=36.45 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=76.8
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..+.+++..|...|.+.++.. +-|.+-|..--.+|++.|..+.|.+--..-..- .-..+|..|=.+|...|++.+|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 346678889999999888765 447777888888999999888887766554432 02467888888899899999999
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 92 TCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
+.|+.-++ +.|+..+|-.=|+...+
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHHHHHH
Confidence 88876554 67888888776666553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.45 Score=29.89 Aligned_cols=53 Identities=26% Similarity=0.358 Sum_probs=31.3
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
..|.+.++++.|.++++.+. .|.+...|...=..+.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556666666666666554 232445555555666666666666666666554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=2.3 Score=37.09 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc----cHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN----VFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
+...|+.+-.+|.+.|++++|...|+.-++ +.|+.. +|..+-.+|...|+.++|...++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666666777777777777777766444 245532 3666666667777777777666665543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.22 Score=31.90 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=47.8
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcC--CC---Cc-HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTL--EP---NS-RFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g--~~---~~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
.+|+.+=..+...|++++|...|++..+.. +. |+ ..+++.+=..|...|++++|++.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567888889999999999999999887652 22 22 45678888899999999999999875
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.99 Score=36.94 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh-----CCCCCCcccHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-----SGVYPDHNVFPSVL 113 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ll 113 (219)
++..++..+...|+.+.+.+.++++. .|-|...|-.+|.+|.++|+...|.+.|+.+.+ -|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 34555556666666666666666554 222555666666666666666666666666543 25555555444444
Q ss_pred HH
Q 041894 114 KS 115 (219)
Q Consensus 114 ~~ 115 (219)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=6.5 Score=35.20 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=100.3
Q ss_pred CChhHHHHHHHHH-HHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 18 KTKSQAKQLHAQI-FKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 18 ~~~~~a~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
..+....++|-.+ .+.+-.+|..++..|=-.|--.|.+++|..-|+..- .|-|-.+||-|=-.++...+..+|...|
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3445555555555 455656788888888888999999999999998753 4437899999999999888999999999
Q ss_pred HHhHhCCCCCCcc-cHHHHHHHHhcccChhhHHHHHHH---HHHhC------CCccHHHHHHHHHHHHhcCCc
Q 041894 95 VRMIGSGVYPDHN-VFPSVLKSCTLLVDFRFGESVHAC---IIRLG------VDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 95 ~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~---m~~~g------~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.+-++ +.|+.+ ....|-=+|...|.+++|...|=. |.+.+ ..++...|.+|=.++.-.++.
T Consensus 488 ~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 488 NRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 98776 578753 444445578899999998877554 33321 112345788877777777777
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.2 Score=36.41 Aligned_cols=149 Identities=6% Similarity=-0.022 Sum_probs=77.4
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCC--CC---cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCC--C--hhh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLE--PN---SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPA--P--PVA 73 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~--~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~--~--~~~ 73 (219)
|...-+.|-..+++++|-..|.+..+... .. -...|.....+|-+. ++++|...+.+.. ..+ + ..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44444455556666666666665533221 11 112344444444333 6666666555432 111 1 234
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHhH----hCCCCCC--cccHHHHHHHHhcccChhhHHHHHHHHHHhCCC-----ccH
Q 041894 74 WKSIIRCCTQN-GLLVESLTCFVRMI----GSGVYPD--HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-----LDL 141 (219)
Q Consensus 74 ~~~li~~~~~~-g~~~~a~~~~~~m~----~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~ 141 (219)
+..+-..|-.. |++++|.+.|.+-. ..+ .|. ...+.-+...+.+.|++++|..+++.+...-+. .+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 55566666666 78888888887743 233 221 235566777788889999999999988765432 222
Q ss_pred H-HHHHHHHHHHhcCCc
Q 041894 142 Y-TNNALMNMYAQSQNM 157 (219)
Q Consensus 142 ~-~~~~ll~~y~~~g~~ 157 (219)
. .+-..+-++.-.|+.
T Consensus 196 ~~~~l~a~l~~L~~~D~ 212 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDY 212 (282)
T ss_dssp HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 2 222223355556777
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=7.2 Score=37.14 Aligned_cols=181 Identities=10% Similarity=-0.006 Sum_probs=107.3
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHc----CCC--C-cHHHHHHHHHHHhhcCCHHHHHHHHHhcCC------CC-Chh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKT----LEP--N-SRFLISRLLFIYNNFNLVHDSLCLLDTLKT------PA-PPV 72 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~------~~-~~~ 72 (219)
+..+-..+...|+++.|...+++..+. +.. + ....+..+-..+...|++++|...+.+... +. ...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 344445667889999999988876553 221 1 223344444556777999999988876521 10 123
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCcccHH-----HHHHHHhcccChhhHHHHHHHHHHhCCCcc---HHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFP-----SVLKSCTLLVDFRFGESVHACIIRLGVDLD---LYT 143 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~-----~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~ 143 (219)
.+..+-..+...|++++|.+.+.+...-.- ......+. ..+..+...|+.+.+.+.+........... ...
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 344455677788999999999888743210 01111111 122444557888888888666433211111 111
Q ss_pred HHHHHHHHHhcCCchhH--HHHHhh--------------------hhccCCcchhhHHHHhhcCCC
Q 041894 144 NNALMNMYAQSQNMDMH--IYDRFQ--------------------GFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 144 ~~~ll~~y~~~g~~~~~--~~~~~~--------------------~~~~~~g~~~~a~~l~~~m~~ 187 (219)
+..+-.++...|+.+++ .++... ..+.+.|+.++|.+.+.+..+
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566778888988776 232211 113478888999999999873
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=2.2 Score=32.00 Aligned_cols=85 Identities=6% Similarity=-0.072 Sum_probs=63.6
Q ss_pred HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPDHNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~ 124 (219)
-+...|++++|+.+|.-+. .|.|..-|..|=.++-..+++++|...|.....-.. .|-+.- -.=.++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f--~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF--FTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc--hHHHHHHHhCCHHH
Confidence 3456899999999999876 332666677888888888999999999987443321 233323 33478888999999
Q ss_pred HHHHHHHHHH
Q 041894 125 GESVHACIIR 134 (219)
Q Consensus 125 a~~~~~~m~~ 134 (219)
|+..|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998766
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=7.8 Score=33.93 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP---VAWKSIIRCCTQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 100 (219)
.+...++.+=.+|.+.|++++|...|+.-- .|.+. .+|..+-.+|.+.|+.++|...|++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355678889999999999999999998743 45123 45999999999999999999999998764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.77 E-value=11 Score=33.29 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=88.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcH-----HHHHHHHHHHhh----cCCHHHHHHHHHhcC--CCCChhh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSR-----FLISRLLFIYNN----FNLVHDSLCLLDTLK--TPAPPVA 73 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~-----~~~~~ll~~~~~----~g~~~~A~~~~~~m~--~~~~~~~ 73 (219)
.+..+|...+=.||-+.+.+++.+..+.+ +.... ..|...+..++- ....+.|.++++.+. .| +...
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP-~s~l 268 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP-NSAL 268 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC-CcHH
Confidence 45667777888899999999888776644 32111 235555554443 467889999999987 48 8877
Q ss_pred HHHHHHH-HHhcCChhHHHHHHHHhHhCC--C-CCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 74 WKSIIRC-CTQNGLLVESLTCFVRMIGSG--V-YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 74 ~~~li~~-~~~~g~~~~a~~~~~~m~~~g--~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
|.-.-.. +...|++++|.+.|++..... . +.....+--+.-.+....++++|...+..+.+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 7766643 444699999999999755322 1 1222333345556677899999999999987653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.52 E-value=4.2 Score=33.40 Aligned_cols=114 Identities=13% Similarity=0.071 Sum_probs=85.2
Q ss_pred cCCHHHHHHHHHhcCC-----CCChhhHHHHHHHHHh-cC-ChhHHHHHHHHhHhC-CCCCCcccHHHHHHHHhcccChh
Q 041894 52 FNLVHDSLCLLDTLKT-----PAPPVAWKSIIRCCTQ-NG-LLVESLTCFVRMIGS-GVYPDHNVFPSVLKSCTLLVDFR 123 (219)
Q Consensus 52 ~g~~~~A~~~~~~m~~-----~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~ 123 (219)
+..+-+|+++|+.... . |..+-..+++.... .+ .+..-+++.+-+... |-.|+..+..++|..++..+++.
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~-d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIF-DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHhhccCcccceee-ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3446777777774322 2 55666667777766 22 344445555555533 56788899999999999999999
Q ss_pred hHHHHHHHHHHh-CCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc
Q 041894 124 FGESVHACIIRL-GVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 124 ~a~~~~~~m~~~-g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
.-.+++..-... +...|...|..+|+.....|+. +-.+.+.++
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~------------------~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ------------------EVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH------------------HHHHHHhhC
Confidence 999998886655 6778999999999999999999 877777775
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.50 E-value=12 Score=33.75 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=101.6
Q ss_pred hHHHHHHhCccccCC--hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH--------hcCC--CCChh
Q 041894 5 KTLINLLKNPVSIKT--KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLD--------TLKT--PAPPV 72 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~--~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~--------~m~~--~~~~~ 72 (219)
+.+.+++..+.+... ...+..++...-+..-.-...+.-+++-.....|+++.|.+++. .+.. . .+-
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~-~P~ 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH-LPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc-Chh
Confidence 345555555544432 44455555554433322234455666677888999999999988 3331 1 234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCcccHHHHHH----HHhcccChhhHHHHHHHHHHhCCCccHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPDHNVFPSVLK----SCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 146 (219)
+-.++..-+.+.++-+.|-.++++-.+.. -.+......+++. .=-+.|..++|..+++++.+.. .+|..+...
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~ 497 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQ 497 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHH
Confidence 55666777777777777777877755321 1222222222222 2236699999999999998854 588999999
Q ss_pred HHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 147 LMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 147 ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++.+|++. ++ ++|..+=..+.
T Consensus 498 lV~a~~~~-d~------------------eka~~l~k~L~ 518 (652)
T KOG2376|consen 498 LVTAYARL-DP------------------EKAESLSKKLP 518 (652)
T ss_pred HHHHHHhc-CH------------------HHHHHHhhcCC
Confidence 99999985 45 77777766554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.38 E-value=11 Score=35.71 Aligned_cols=149 Identities=12% Similarity=0.077 Sum_probs=73.8
Q ss_pred hHHHHHHh--CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC------------CCC
Q 041894 5 KTLINLLK--NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT------------PAP 70 (219)
Q Consensus 5 ~~~~~ll~--~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~------------~~~ 70 (219)
+|=..+|+ -|...|+++.|.+-...+. +..+|..|-++|.+..+++-|.--+..|+. .++
T Consensus 727 ~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 727 STRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred HHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 33344443 4556677777665544433 455677777777777777777666666641 101
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHH------
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN------ 144 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~------ 144 (219)
.+=.-+----...|.+++|..+|++=.+ |..|=+-|-..|.+++|.++-+.=-+-.+..+-+-|
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 1111111122345667777776665332 223333444556666666664433332332222222
Q ss_pred ----HHHHHHHHhcCCchhHHHHHhhhhc
Q 041894 145 ----NALMNMYAQSQNMDMHIYDRFQGFG 169 (219)
Q Consensus 145 ----~~ll~~y~~~g~~~~~~~~~~~~~~ 169 (219)
..-|.-|-+.|...--+|+++.++.
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 2333444444444333555555554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.26 E-value=7.3 Score=32.03 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=62.9
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcC---ChhHHHHHHHHhHhCCCCCC-ccc
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNG---LLVESLTCFVRMIGSGVYPD-HNV 108 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~-~~t 108 (219)
+-|...|-.|=..|.+.|+...|...|..-. .+ |...+..+-.++.... .-.++..+|++..+. .|+ ..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 4466777777777888888887777776543 33 5555555555554442 346677777777654 233 334
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 109 FPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 109 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
-.-+--.+...|++.+|...|+.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 4445556667778888888888777764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=90.05 E-value=3.2 Score=36.25 Aligned_cols=133 Identities=10% Similarity=0.074 Sum_probs=92.0
Q ss_pred hhcCCHHHHHHHHHhcC---CC--C---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH--hcc
Q 041894 50 NNFNLVHDSLCLLDTLK---TP--A---PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--TLL 119 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~---~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~ 119 (219)
-+.++.++|+++|-.+- +. . ..+.-+-+|++|... +++.....+.+..+. .| ...|-.+..+. -+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 45788999999998764 11 0 135677899999975 677777777776653 34 44555666554 367
Q ss_pred cChhhHHHHHHHHHHh--C------------CCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 120 VDFRFGESVHACIIRL--G------------VDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 120 g~~~~a~~~~~~m~~~--g------------~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
+.++.|.+.++.-... + +-+|...-+...+++...|++ .+++.++++|
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f------------------~EgR~iLn~i 154 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRF------------------SEGRAILNRI 154 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCc------------------chHHHHHHHH
Confidence 8888888887776544 2 123444456677889999999 9999998887
Q ss_pred CC--------CCCeeehhHHHHHHhhhh
Q 041894 186 PE--------RNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 186 ~~--------~~~~~~~n~ll~~~~~~~ 205 (219)
.. -+ +-+||-++--+.|+-
T Consensus 155 ~~~llkrE~~w~-~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 155 IERLLKRECEWN-SDMYDRAVLMLSRSY 181 (549)
T ss_pred HHHHhhhhhccc-HHHHHHHHHHHhHHH
Confidence 62 25 778888777776664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.96 E-value=2.2 Score=29.06 Aligned_cols=59 Identities=17% Similarity=0.328 Sum_probs=40.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHH-HhCCCccHHHHHHHHH
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-RLGVDLDLYTNNALMN 149 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~ll~ 149 (219)
+..+-+..+..-.+.|+..+..+.|++|-+.+++..|.++++-++ +.|- +...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 334444455555678888888888888888888888888888765 4332 4446666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.92 E-value=12 Score=32.47 Aligned_cols=79 Identities=9% Similarity=0.062 Sum_probs=47.9
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHH--HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF--IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
...++++.|.-+-++.++.. +.+.. ..++. ++...+++++|.-.|+..+ .|-+...|--|+++|...|.+.+|
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~-~r~~~--alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSE-PRNHE--ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhHHHHHHHHHHHhccC-cccch--HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 34566777777766666543 11111 22222 4456777888877777654 332677788888888888877777
Q ss_pred HHHHHH
Q 041894 91 LTCFVR 96 (219)
Q Consensus 91 ~~~~~~ 96 (219)
...=++
T Consensus 388 ~~~An~ 393 (564)
T KOG1174|consen 388 NALANW 393 (564)
T ss_pred HHHHHH
Confidence 654433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.76 E-value=4.8 Score=29.46 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=40.0
Q ss_pred hhcCCHHHHHHHHHhcC--CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhc
Q 041894 50 NNFNLVHDSLCLLDTLK--TPA---PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~--~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~ 118 (219)
.+.|++++|.+.|+.+. .|. ...+--.|+.+|.+.+++++|...++++++.. -.|+ .-|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 35566777777777665 121 23455567777777777777777777765532 2232 355555565553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.67 E-value=3.9 Score=33.66 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=72.4
Q ss_pred HhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
.+.+++++|+..|.+-.+ +.| |.+-|..=-.+|++.|..+.|.+-.+.-.+.. ..-...|..|=.+|.-.|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~--- 165 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY--- 165 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH---
Confidence 556889999999988765 355 56777777888999999988887776655543 23477888888888888888
Q ss_pred HHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHH
Q 041894 161 IYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGC 201 (219)
Q Consensus 161 ~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~ 201 (219)
++|.+.|.+-. +|+ ..+|..=|..-
T Consensus 166 ---------------~~A~~aykKaLeldP~-Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 ---------------EEAIEAYKKALELDPD-NESYKSNLKIA 192 (304)
T ss_pred ---------------HHHHHHHHhhhccCCC-cHHHHHHHHHH
Confidence 88888888766 355 44565555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=9.3 Score=30.58 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=96.4
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHH---HHHHHHHhhcCCHHHHHHHHHhcC--CCC-ChhhHHHHHH
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLI---SRLLFIYNNFNLVHDSLCLLDTLK--TPA-PPVAWKSIIR 79 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~---~~ll~~~~~~g~~~~A~~~~~~m~--~~~-~~~~~~~li~ 79 (219)
.|..... +.+.|+++.|...|+.+.+.--.+ .... --+..+|.+.++.++|...|+++. .|. ....|--.+.
T Consensus 35 ~Y~~A~~-~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQ-KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 3343443 457899999999999998864332 3333 334567899999999999998874 221 2234444444
Q ss_pred HHHh-----------------cCC---hhHHHHHHHHhHhC----CCCCCcccHH------------HHHHHHhcccChh
Q 041894 80 CCTQ-----------------NGL---LVESLTCFVRMIGS----GVYPDHNVFP------------SVLKSCTLLVDFR 123 (219)
Q Consensus 80 ~~~~-----------------~g~---~~~a~~~~~~m~~~----g~~p~~~t~~------------~ll~~~~~~g~~~ 123 (219)
+.+. ..+ ..+|+..|+++++. ...|+....- .+-+-|-+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 4431 112 24566677776654 1222222111 2445688999999
Q ss_pred hHHHHHHHHHHhC--CCccHHHHHHHHHHHHhcCCchhH
Q 041894 124 FGESVHACIIRLG--VDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 124 ~a~~~~~~m~~~g--~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
-|..-++.+.+.= -.......-.++.+|...|..+.+
T Consensus 193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 9999999988762 223455556778999999988766
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.62 E-value=6.3 Score=28.71 Aligned_cols=48 Identities=8% Similarity=-0.063 Sum_probs=26.7
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 109 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+...+++....|.-++-..+...+.+++ +++....-.+-.+|.+.|..
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~ 136 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNT 136 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcch
Confidence 3445666666677777777766665543 55566666667777777777
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=89.42 E-value=8.1 Score=35.20 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=83.9
Q ss_pred CCcHHHHH--HHHHHHhhcCCHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH
Q 041894 36 PNSRFLIS--RLLFIYNNFNLVHDSLCLLDTLKTPAPPV---AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP 110 (219)
Q Consensus 36 ~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 110 (219)
+|+...|+ -+...|-+.|+++.|...++..... .+. .|..=-+-+.++|++++|...+++-++-. .||...=+
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INs 443 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINS 443 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHH
Confidence 45665554 4566788899999999999887643 222 24333477788999999999999987654 56665554
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH----------HHHHhcCCchhH
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM----------NMYAQSQNMDMH 160 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll----------~~y~~~g~~~~~ 160 (219)
--.+...++...++|..+...--+.|. +...+-+.+ .+|.|.|++..|
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~A 501 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLA 501 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHH
Confidence 566677788999999999888777774 332222222 566777777555
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.39 E-value=2.6 Score=32.06 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc--ccHHHHHHHHhcccChhhHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH--NVFPSVLKSCTLLVDFRFGESVHACII 133 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~ 133 (219)
..+..+-.-|.+.|+.++|++.|.++++....|.. ..+-.+|..+...+++..+........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45667777788888888888888887766555543 456667777777777777776655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.43 Score=34.45 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=28.3
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
...+.|.-.+|+.+|..|+++|-+|| .|+.|+..+.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~ 139 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEAK 139 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhc
Confidence 34456777889999999999998888 6888887653
|
The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.23 E-value=4.8 Score=35.99 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=81.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC-h-hhHHHHHHHHHhcCChhH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP-P-VAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~-~-~~~~~li~~~~~~g~~~~ 89 (219)
|.-.|.+++|.+-|...++.. +-|..+||.|=..++...+.++|+..+++.. +| + + +-||.-|+ |...|.+++
T Consensus 440 y~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS-~mNlG~ykE 516 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGIS-CMNLGAYKE 516 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-Ceeeeehhhhhh-hhhhhhHHH
Confidence 455789999999999998765 4477899999999999999999999998765 56 4 3 33665554 566799999
Q ss_pred HHHHHHH---hHhCCC------CCCcccHHHHHHHHhcccChhhHHH
Q 041894 90 SLTCFVR---MIGSGV------YPDHNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 90 a~~~~~~---m~~~g~------~p~~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
|.+.|-+ |.+.+- .++...|.+|=.+.+-.+..|.+.+
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999877 443322 2344577777766666666654443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.20 E-value=11 Score=30.96 Aligned_cols=118 Identities=15% Similarity=0.011 Sum_probs=85.4
Q ss_pred CCCcHHHHHHHHHHHhhc-C-CHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCc
Q 041894 35 EPNSRFLISRLLFIYNNF-N-LVHDSLCLLDTLK-----TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDH 106 (219)
Q Consensus 35 ~~~~~~~~~~ll~~~~~~-g-~~~~A~~~~~~m~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~ 106 (219)
+--|..+...++...... + .+..-.++.+-+. .+ +..+--++|..++..+++.+-+++++.-... +-.-|.
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l-~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~ 238 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSL-TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDP 238 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCC-ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCC
Confidence 445677777777777662 2 2233333333332 45 7788899999999999999999999875544 445678
Q ss_pred ccHHHHHHHHhcccChhhHHHHHHH-----HHHhCCCccHHHHHHHHHHHHh
Q 041894 107 NVFPSVLKSCTLLVDFRFGESVHAC-----IIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 107 ~t~~~ll~~~~~~g~~~~a~~~~~~-----m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
..|..+|+.-...|+....+.+... +++.++..+...-.+|-+.+-+
T Consensus 239 rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 239 RPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred chHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 8999999999999999888887766 5677777777777776666544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.94 E-value=12 Score=30.73 Aligned_cols=135 Identities=9% Similarity=0.029 Sum_probs=89.3
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHH-----H
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSII-----R 79 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li-----~ 79 (219)
.++..+--.+.+.-...++...++..-+.++...+.|.+.-.+.|+.+.|...|+..+ .. |..+.+.++ .
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-DGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hccchhHHHHhhhhh
Confidence 3344444446666667777777776666678888888888899999999999999654 22 444455444 2
Q ss_pred HHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 80 CCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
-|.-++++-.|...|++..... -.|-.+.=.+++.-|. |+..+|.+..+.|+.. .|...+-++++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl--g~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL--GKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH--HHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3444578888888898876542 2233333334444444 7889999999888775 46555666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.84 E-value=4.8 Score=33.00 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHH-----hCCCccHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIR-----LGVDLDLYTNNA 146 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 146 (219)
.++..++..+..-|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|...+..+.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 567778888888899999999999987653 45788999999999999999999999888765 699999888888
Q ss_pred HHHHH
Q 041894 147 LMNMY 151 (219)
Q Consensus 147 ll~~y 151 (219)
..+..
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 77773
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.62 E-value=7.6 Score=28.29 Aligned_cols=119 Identities=4% Similarity=-0.062 Sum_probs=70.3
Q ss_pred cCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHH-----------------hhcCCHHHHHHHHHhcCCCCChhhHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLE--PNSRFLISRLLFIY-----------------NNFNLVHDSLCLLDTLKTPAPPVAWKSI 77 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~--~~~~~~~~~ll~~~-----------------~~~g~~~~A~~~~~~m~~~~~~~~~~~l 77 (219)
.|..++..++......++- +.+=+..|.+=.+- ..+++++....-+..+. . +..-.+..
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n-~-~se~vD~A 92 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN-K-LSEYVDLA 92 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-----HHHHHH
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-c-hHHHHHHH
Confidence 4667777888777766541 11112222221111 22344444444444332 2 45567888
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 138 (219)
++.....|+-++-.+++.++.+++ +|+......+-++|.+.|+.+++..++.+.=+.|++
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 899999999999999999987644 677778888899999999999999999888888863
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.56 E-value=4.9 Score=32.55 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCC----CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc--HHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSG----VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD--LYTNNA 146 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ 146 (219)
.|+.-+..+. .|++.+|...|.+.++.. ..||..-| |-.++...|+++.|..+|..+.+.-.+.. ....--
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 5999998876 578999999999998763 55665555 67889999999999999999887643321 234555
Q ss_pred HHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 147 LMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 147 ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
|-....+.|+. ++|+..|++..++
T Consensus 221 lg~~~~~l~~~------------------d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNT------------------DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCH------------------HHHHHHHHHHHHH
Confidence 56677788888 9999988887754
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.48 E-value=6.5 Score=31.88 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHH---HHHHHHhcCChhHHHHHHHHhHhC-CCCCCc-ccHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKS---IIRCCTQNGLLVESLTCFVRMIGS-GVYPDH-NVFPSVL 113 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-~t~~~ll 113 (219)
.|+.-+..| +.|++..|...|.... .|.+..+=|+ |-+++...|++++|-.+|..+.++ +-.|.. ..+--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666554 3445777777777654 2313333333 556777777777777777777654 222222 3444555
Q ss_pred HHHhcccChhhHHHHHHHHHHh
Q 041894 114 KSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.+..+.|+.+.|..+++++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5666777788888888777665
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.25 E-value=6.5 Score=27.07 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
..++|..+-+.+...+-. ...+--+-++.+.+.|++++|..+.+.+..| |...|-+|-. .+.|..+++..-+..|-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~p-dlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYP-DLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCc-hHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345666666666554422 2222233344566777777777777777777 7777766643 34555565555555665
Q ss_pred hCCCCCCcccH
Q 041894 99 GSGVYPDHNVF 109 (219)
Q Consensus 99 ~~g~~p~~~t~ 109 (219)
.+| .|-...|
T Consensus 96 ~sg-~p~lq~F 105 (115)
T TIGR02508 96 ASG-DPRLQTF 105 (115)
T ss_pred hCC-CHHHHHH
Confidence 555 3433333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.25 E-value=13 Score=32.94 Aligned_cols=124 Identities=9% Similarity=0.045 Sum_probs=78.1
Q ss_pred HHHHHHhCccc----cCChhHHHHHHHHHHHcCCCCcHHHHHHHHH-HHhhcCCHHHHHHHHHhcCCCC------ChhhH
Q 041894 6 TLINLLKNPVS----IKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTPA------PPVAW 74 (219)
Q Consensus 6 ~~~~ll~~~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~~------~~~~~ 74 (219)
+|..++..++. ....+.++++++.+.++ -|+...|.-.-. .+...|++++|.+.|+.....+ ....+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 45555554443 45788899999998876 567666655444 5566899999999999643210 12223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh--cccCh-------hhHHHHHHHHH
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT--LLVDF-------RFGESVHACII 133 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~-------~~a~~~~~~m~ 133 (219)
==+..++.-..++++|...|..+.+.. ..+..+|. .+.++| ..|+. ++|..++....
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~-Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYA-YLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHH-HHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 334455666789999999999988642 22333333 333333 44656 77777777643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.21 E-value=15 Score=32.24 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcCCHHHHHHH-----------------------HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 42 ISRLLFIYNNFNLVHDSLCL-----------------------LDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~-----------------------~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
.+.++.-+-+.|.++.|+.+ -.+. + +...|..|=+...+.|+++-|.+.|....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~--~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKEL--D-DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCC--S-THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhc--C-cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 56666666666666666555 3222 2 45788888888888888888888886632
Q ss_pred hCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 99 GSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 99 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
-|..|+--|.-.|+.+.-.++-+.-...| -+|.-..++.-.|+.
T Consensus 375 ---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 375 ---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDV 418 (443)
T ss_dssp ----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-H
T ss_pred ---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCH
Confidence 45666666777777776666666555555 345555566666777
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=4.4 Score=30.42 Aligned_cols=84 Identities=7% Similarity=-0.141 Sum_probs=65.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCChhHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL---KTPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
+.+.|+++.|+.+|..+-..++. +..-|..|=.++-..+++++|...|... ... |...+=-.=.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 45789999999999999877643 4444677777778889999999998753 233 555555666888999999999
Q ss_pred HHHHHHhHh
Q 041894 91 LTCFVRMIG 99 (219)
Q Consensus 91 ~~~~~~m~~ 99 (219)
...|..-..
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999977655
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.71 E-value=17 Score=33.47 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=65.1
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC---------CCChhhHHHH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT---------PAPPVAWKSI 77 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~~l 77 (219)
|...|.-....+-++.+.+++.+-++ .++..-+-.|..+++.++.++|-+.+..... +.+...|.-+
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 33344444444555555555555442 3344456677788888888888888776531 1133445544
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCC--CCCc--ccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGV--YPDH--NVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~--~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
-+-..++-+.-..+.+ ++..+.|+ -||. ..|++|-+.|.++|.++.|+.++++-.+
T Consensus 217 cdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444443222222211 12222222 2443 3566777777777777777777666443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.53 E-value=14 Score=30.20 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=96.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCC-C--------ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTP-A--------PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV 112 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~-~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 112 (219)
+++|+..+.-...+++-...++.=..| . -..+-++++..+.-.|.+.-....+.+.++..-+-+..-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455665555544444444444321111 0 2245567888888888899899999888875444566667777
Q ss_pred HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH-----HHHhcCCchhH-H-HHHhhhh------------cc--C
Q 041894 113 LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN-----MYAQSQNMDMH-I-YDRFQGF------------GF--N 171 (219)
Q Consensus 113 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-----~y~~~g~~~~~-~-~~~~~~~------------~~--~ 171 (219)
.+.-.+.||.+.|...|+...+..-..|-.+.+.++. .|.-.+++..+ + |++|..- +| =
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 7777888999999999998876654556555655553 22333344333 2 3332211 12 2
Q ss_pred CcchhhHHHHhhcCCCCCC-eeehhHHHHHH
Q 041894 172 GGREASVHEVLDKIPERNG-NVELSSGLAGC 201 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~~~~~-~~~~n~ll~~~ 201 (219)
.|+..+|.+.++.|....- ..+-++++-.+
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 6888999999999986540 34445544443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.50 E-value=10 Score=31.15 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=84.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHh-CCCCCCcccHHHHHHHH---hcccChhhHHHHHHHHHHhCCCccHHH
Q 041894 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSC---TLLVDFRFGESVHACIIRLGVDLDLYT 143 (219)
Q Consensus 68 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~ 143 (219)
|+|...|--|=..|...|+.+.|..-|.+-.+ .|=+|+ .+..+-.++ ....+..++..++++..+.. ..|...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 44889999999999999999999999998654 444444 443333333 33445778889999988765 346666
Q ss_pred HHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC--CCeeehhHHHHHHhh
Q 041894 144 NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER--NGNVELSSGLAGCNK 203 (219)
Q Consensus 144 ~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~n~ll~~~~~ 203 (219)
-.-|=..+-..|++ .+|...++.|.+. . ..+|..+|..-..
T Consensus 230 l~lLA~~afe~g~~------------------~~A~~~Wq~lL~~lp~-~~~rr~~ie~~ia 272 (287)
T COG4235 230 LSLLAFAAFEQGDY------------------AEAAAAWQMLLDLLPA-DDPRRSLIERSIA 272 (287)
T ss_pred HHHHHHHHHHcccH------------------HHHHHHHHHHHhcCCC-CCchHHHHHHHHH
Confidence 66666788889999 9999999998853 3 4788888876543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.46 E-value=18 Score=33.64 Aligned_cols=124 Identities=14% Similarity=0.056 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHh
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKSCT 117 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~ 117 (219)
.|...-..+.+.++.++|..-+.+...- -....|.-.=..+...|+..+|.+.|..-.. +.|+.+ +.+++-..+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 3555666777778888887666655432 0223344443455566888899888877554 567754 7888888889
Q ss_pred cccChhhHHH--HHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 118 LLVDFRFGES--VHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 118 ~~g~~~~a~~--~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
+.|+...+.. ++..+.+.+ +.+...|-.|=..+-+.|+. ++|-+-|+..
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~------------------~~Aaecf~aa 780 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDS------------------KQAAECFQAA 780 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccch------------------HHHHHHHHHH
Confidence 9998887777 888888887 56788899999999999999 8888888753
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.37 E-value=14 Score=29.94 Aligned_cols=169 Identities=8% Similarity=0.060 Sum_probs=110.3
Q ss_pred ccCChhHHHHHHHHHHH---cC-CCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC--h-hhHHHHHHHHHhcC
Q 041894 16 SIKTKSQAKQLHAQIFK---TL-EPNSRF-LISRLLFIYNNFNLVHDSLCLLDTLK--TPAP--P-VAWKSIIRCCTQNG 85 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~---~g-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~--~-~~~~~li~~~~~~g 85 (219)
...+.++..+++.+++. .| ..++.+ .|-.++-+-.-.|+.+-|...++++. -|++ + .....++.+ .|
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa---~~ 100 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA---TG 100 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHH---hh
Confidence 44567888888888864 34 566766 45677777778889999999988865 2311 1 223333333 47
Q ss_pred ChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH--HH
Q 041894 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI--YD 163 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~--~~ 163 (219)
+.++|.++|+..++.. +-|.+++.-=+-..-..|.--.|.+-+....+. +..|...|--|-+.|...|+++.|+ ++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 8999999999998776 445666654333333334444454444433222 6789999999999999999999884 34
Q ss_pred H--------------hhhhcc---CCcchhhHHHHhhcCCCCC
Q 041894 164 R--------------FQGFGF---NGGREASVHEVLDKIPERN 189 (219)
Q Consensus 164 ~--------------~~~~~~---~~g~~~~a~~l~~~m~~~~ 189 (219)
. +.+..+ -..+++-|+++|.+-.+-+
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 3 222222 2345677888888766555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=87.32 E-value=13 Score=29.64 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhH---HHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAW---KSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLK 114 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~ 114 (219)
.|.. -..+.+.|++++|.+.|+++. .|.+..+- -.+..++.+.+++++|...|++..+.- -.|+ .-|...+.
T Consensus 35 ~Y~~-A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~ 112 (243)
T PRK10866 35 IYAT-AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMR 112 (243)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHH
Confidence 3443 344566899999999999986 34122322 345688899999999999999987652 2233 24445555
Q ss_pred HHhc-----------------ccC---hhhHHHHHHHHHHhCCC----ccHHHHH------------HHHHHHHhcCCch
Q 041894 115 SCTL-----------------LVD---FRFGESVHACIIRLGVD----LDLYTNN------------ALMNMYAQSQNMD 158 (219)
Q Consensus 115 ~~~~-----------------~g~---~~~a~~~~~~m~~~g~~----~~~~~~~------------~ll~~y~~~g~~~ 158 (219)
+.+. ..+ ...|...++.+++.=.. ++....- .+-+.|-+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 5431 012 34555667776655321 2221111 1225689999997
Q ss_pred hHH
Q 041894 159 MHI 161 (219)
Q Consensus 159 ~~~ 161 (219)
.|+
T Consensus 193 AA~ 195 (243)
T PRK10866 193 AVV 195 (243)
T ss_pred HHH
Confidence 663
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.27 E-value=4.4 Score=37.44 Aligned_cols=142 Identities=10% Similarity=0.001 Sum_probs=92.3
Q ss_pred HHHHHHHH-HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 041894 24 KQLHAQIF-KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102 (219)
Q Consensus 24 ~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 102 (219)
.+++..+. +.|..-..-+.+--+.-+...|+-++|.++=.+++-| |-..|=-=+.+++..+++++-+++=+.++
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fkip-dKr~~wLk~~aLa~~~kweeLekfAkskk---- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIP-DKRLWWLKLTALADIKKWEELEKFAKSKK---- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCc-chhhHHHHHHHHHhhhhHHHHHHHHhccC----
Confidence 34444442 2333333334455556667788899999999999888 88888888899999888888665544432
Q ss_pred CCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHh
Q 041894 103 YPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVL 182 (219)
Q Consensus 103 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~ 182 (219)
+ ..=|-....+|.+.|+.++|...+...... + -.+.+|.+.|++.+|. ..+++..|...-.+++
T Consensus 743 -s-PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---~------ekv~ay~~~~~~~eAa-----d~A~~~rd~~~L~ev~ 806 (829)
T KOG2280|consen 743 -S-PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---Q------EKVKAYLRVGDVKEAA-----DLAAEHRDGAELSEVL 806 (829)
T ss_pred -C-CCCchhHHHHHHhcccHHHHhhhhhccCCh---H------HHHHHHHHhccHHHHH-----HHHHHhcChHHHHHHH
Confidence 1 445667788999999999998887654111 1 4578888888886653 2223334445555555
Q ss_pred hcCC
Q 041894 183 DKIP 186 (219)
Q Consensus 183 ~~m~ 186 (219)
....
T Consensus 807 ~~~~ 810 (829)
T KOG2280|consen 807 SKCT 810 (829)
T ss_pred HhcC
Confidence 5544
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=87.05 E-value=8.4 Score=28.30 Aligned_cols=85 Identities=7% Similarity=0.047 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCC---C--CCCcccHHHHHHHHhcccC-hhhHHHHHHHHHHhCCCccHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSG---V--YPDHNVFPSVLKSCTLLVD-FRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~--~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
.-.|+++......+++...+++++.+..-. + ..+..+|.+++++.++... --.+..+|..|.+.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 457888888888889999998888874221 1 3567799999999988877 556778899999988999999999
Q ss_pred HHHHHHHhcCC
Q 041894 146 ALMNMYAQSQN 156 (219)
Q Consensus 146 ~ll~~y~~~g~ 156 (219)
.||.+..+-..
T Consensus 120 ~li~~~l~g~~ 130 (145)
T PF13762_consen 120 CLIKAALRGYF 130 (145)
T ss_pred HHHHHHHcCCC
Confidence 99999887533
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.02 E-value=6 Score=37.33 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=99.9
Q ss_pred CcHHHHHHHHH--HHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-C--------CCCC
Q 041894 37 NSRFLISRLLF--IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-G--------VYPD 105 (219)
Q Consensus 37 ~~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~ 105 (219)
-|..|--++|+ .|...|+.+.|.+-.+.+++. ..|..+-+.|.+-.+++-|.-.+..|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~---~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD---SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh---HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 46677777776 678899999999998888766 78999999999999999888888888532 2 2443
Q ss_pred cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH--------------HHHhhhhccC
Q 041894 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI--------------YDRFQGFGFN 171 (219)
Q Consensus 106 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~--------------~~~~~~~~~~ 171 (219)
...- -+----...|.+++|+.++.+=++.. .|=+.|-..|++++|+ |-.-..++..
T Consensus 801 e~ea-kvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEA-KVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred chhh-HHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 2221 11122356789999999988766543 3445677778887772 3334456677
Q ss_pred CcchhhHHHHhhcCCCC
Q 041894 172 GGREASVHEVLDKIPER 188 (219)
Q Consensus 172 ~g~~~~a~~l~~~m~~~ 188 (219)
.+|++.|.++|++-..+
T Consensus 871 r~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVH 887 (1416)
T ss_pred hccHHHHHHHHHhcCCh
Confidence 89999999999986644
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.99 E-value=5.6 Score=27.42 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=32.3
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 92 TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
+-+..+..-.+.|...+..+.|++|.+.+++..|.++++-++.. ..+....|..+|+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33444445567777777888888888888888777777766432 2232336666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.63 E-value=21 Score=31.15 Aligned_cols=170 Identities=11% Similarity=0.011 Sum_probs=98.9
Q ss_pred cccCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhh------HHHHHHHHHhcCCh
Q 041894 15 VSIKTKSQAKQLHAQIFKT-LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVA------WKSIIRCCTQNGLL 87 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~li~~~~~~g~~ 87 (219)
+..++...+-..+-.+... -++.|.+....+-+++...|+.++|+..|.+...- |+.+ |..|+ .+.|++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-dpy~i~~MD~Ya~LL---~~eg~~ 282 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-NPDNVEAMDLYAVLL---GQEGGC 282 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-ChhhhhhHHHHHHHH---HhccCH
Confidence 3344555555555544443 36778899999999999999999999999887633 3222 22222 233444
Q ss_pred hHHHHHHHHhHh------------------------------CCCCCCcccHHH-HH--HHHhcccChhhHHHHHHHHHH
Q 041894 88 VESLTCFVRMIG------------------------------SGVYPDHNVFPS-VL--KSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 88 ~~a~~~~~~m~~------------------------------~g~~p~~~t~~~-ll--~~~~~~g~~~~a~~~~~~m~~ 134 (219)
++...+-..+.. ..|..|...-.. +| +.+...++.++|.=.|.....
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 443333333221 112222222221 12 223345667766666666555
Q ss_pred hCCCccHHHHHHHHHHHHhcCCchhHH------HHHhhhh------------ccCCcchhhHHHHhhcCCCCC
Q 041894 135 LGVDLDLYTNNALMNMYAQSQNMDMHI------YDRFQGF------------GFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 135 ~g~~~~~~~~~~ll~~y~~~g~~~~~~------~~~~~~~------------~~~~g~~~~a~~l~~~m~~~~ 189 (219)
.. +.+..+|.-|++.|.-.|++++|. ++.+.+- ...--.=|+|..++++-.+.+
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 43 357899999999999999999883 3332211 112223388888888766443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.35 E-value=1.8 Score=23.32 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
|+.|=+.|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=84.75 E-value=20 Score=32.83 Aligned_cols=49 Identities=10% Similarity=-0.007 Sum_probs=33.1
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
...|+.++|......-.+..+ .+.+.|..+=-.+-..+++++|.+.+..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred hcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 456888888877666655443 3556666666666667788888887764
|
|
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=84.03 E-value=10 Score=25.28 Aligned_cols=66 Identities=6% Similarity=-0.060 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
+.++++.+.+.|+- +......+..+-.+.|+.+.|.++++.++ . ..-.|..+++++..-|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-g~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q-KEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-CCcHHHHHHHHHHHcCchhhhh
Confidence 45677888888833 44445555555556788888888888888 6 7788888888888877665543
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.99 E-value=0.42 Score=34.58 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=18.0
Q ss_pred cchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 173 GREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 173 g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
++++.|.+++.+.. + ...|..++..|...+
T Consensus 110 ~~~~~a~e~~~~~~--~-~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 110 KDYEEAIEYAKKVD--D-PELWEQLLKYCLDSK 139 (143)
T ss_dssp HCSCCCTTTGGGCS--S-SHHHHHHHHHHCTST
T ss_pred ccHHHHHHHHHhcC--c-HHHHHHHHHHHHhcC
Confidence 33366665554443 3 567888888876654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.50 E-value=3.8 Score=34.17 Aligned_cols=89 Identities=10% Similarity=0.080 Sum_probs=67.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC---CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGS---GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 146 (219)
.+++-..++..-....+++++..++-.++.+ ...|++..+ +++.-|- .-+.+.+..+...=++.|+-||.++.+.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 4566677777667678899999998888765 245555433 3344433 3467788888888889999999999999
Q ss_pred HHHHHHhcCCchhH
Q 041894 147 LMNMYAQSQNMDMH 160 (219)
Q Consensus 147 ll~~y~~~g~~~~~ 160 (219)
||+.+.+.++..++
T Consensus 141 l~D~flk~~n~~~a 154 (418)
T KOG4570|consen 141 LMDSFLKKENYKDA 154 (418)
T ss_pred HHHHHHhcccHHHH
Confidence 99999999999765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.81 E-value=24 Score=28.66 Aligned_cols=147 Identities=8% Similarity=0.070 Sum_probs=94.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHH-HHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCC
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLF-IYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~ 86 (219)
++-+....|+...|...++++.++- |...-...|=. .+-..|+.++|.++++.+-+. -|.++|.-=|-..-..|+
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 3444455677788888888876553 32222222222 234568889999999887632 145666654444555566
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
.-+|.+-+.+..+. +.-|...|.-+-.-|...|+++.|--.++++.-.. +.+.--+-.+-+.+--.|..++.
T Consensus 136 ~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred cHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 66777777776654 56788889999999999999999988888887654 23444455555555555555444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.76 E-value=18 Score=27.24 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=25.6
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 26 l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
....+.+.+++|....+..++..+.+.|+......++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 344455667777777777777777777776666655543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.57 E-value=21 Score=27.78 Aligned_cols=137 Identities=10% Similarity=-0.014 Sum_probs=99.8
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC---CCCC
Q 041894 33 TLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG---VYPD 105 (219)
Q Consensus 33 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~ 105 (219)
...-|+..---.|-.+..+.|+..+|+..|++-- .. |.-..-.+-++....+++-+|...++.+.+.. -.||
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 3456777777788889999999999999998754 34 77888888899999999999999999976543 3344
Q ss_pred cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 106 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
+.-.+-..+.-.|...+|+..|+.....-.-|....|-+ ..+++.|+.+++- .+..+++++.
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~--e~La~qgr~~ea~--------------aq~~~v~d~~ 223 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYA--EMLAKQGRLREAN--------------AQYVAVVDTA 223 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH--HHHHHhcchhHHH--------------HHHHHHHHHH
Confidence 555667888889999999999999888755555444433 3455666553221 4556667666
Q ss_pred CCC
Q 041894 186 PER 188 (219)
Q Consensus 186 ~~~ 188 (219)
++.
T Consensus 224 ~r~ 226 (251)
T COG4700 224 KRS 226 (251)
T ss_pred Hhc
Confidence 543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.53 E-value=12 Score=33.20 Aligned_cols=116 Identities=10% Similarity=0.079 Sum_probs=82.1
Q ss_pred ccCChhHH-HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 16 SIKTKSQA-KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 16 ~~~~~~~a-~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..|++..| .++|+.+++..-.|+....-+.| +...|+++++...+.... .. ...+--++++...+.|++++|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s-~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGT-TDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcC-CchHHHHHHHhhhchhhHHHHH
Confidence 45666665 66888888776677766554444 456788999888876554 34 5678899999999999999999
Q ss_pred HHHHHhHhCCCC-CCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 92 TCFVRMIGSGVY-PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 92 ~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
..-..|+.+.|+ |...+..+ -+.-..|.++++...|.++....
T Consensus 378 s~a~~~l~~eie~~ei~~iaa--~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAA--GSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCChhheeeec--ccHHHHhHHHHHHHHHHHHhccC
Confidence 999888888776 33333322 22334567888888888876543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.35 E-value=6.8 Score=34.78 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=72.3
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC-hhhHHHHHHHHHhcCChhH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP-PVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~-~~~~~~li~~~~~~g~~~~ 89 (219)
+.+..|+++.|..+|-..+... ++|.+.|+.-..+|.+.|++++|.+==.+-. .| + ...|+-.=.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhcccHHH
Confidence 4567899999999999988777 5588899999999999999988876544433 23 2 3567777777777889999
Q ss_pred HHHHHHHhHhCCCCC-CcccHHHHHHHH
Q 041894 90 SLTCFVRMIGSGVYP-DHNVFPSVLKSC 116 (219)
Q Consensus 90 a~~~~~~m~~~g~~p-~~~t~~~ll~~~ 116 (219)
|..-|.+=++. .| |...++-+.+++
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99888775543 23 334455555555
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.35 E-value=4 Score=22.92 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=12.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
+..+-..|.+.|++++|+++|+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555555555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.04 E-value=3.7 Score=23.08 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 100 (219)
+|..+-..|...|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777776654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.87 E-value=15 Score=26.84 Aligned_cols=85 Identities=8% Similarity=-0.069 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD---HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
...|+.-..++- .|++++|.+.|+.+... .+.+ ...---++.+|.+.++++.|...++.-++.....-..-|.-.
T Consensus 11 ~~ly~~a~~~l~-~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEALQ-KGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 345666655554 68999999999887755 2333 234556889999999999999999999888876666778888
Q ss_pred HHHHHhcCCc
Q 041894 148 MNMYAQSQNM 157 (219)
Q Consensus 148 l~~y~~~g~~ 157 (219)
+.+++...+.
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 8887765554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=80.43 E-value=3.7 Score=21.99 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
+|+.|=..|.+.|++++|..++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467777888999999999988876
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.41 E-value=8.5 Score=26.53 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=12.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
++....+.+.+|.+.+++.-|.++|+.
T Consensus 44 ~P~ii~aALrAcRRvND~a~AVR~lE~ 70 (108)
T PF02284_consen 44 EPKIIEAALRACRRVNDFALAVRILEG 70 (108)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334445555555555555555555533
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.17 E-value=18 Score=29.76 Aligned_cols=82 Identities=9% Similarity=0.034 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhC--CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGS--GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
+-.=|++++..+++++++...-+--+. .++|. +....|--|++.+....+.++-+.-.+..-.-+...|.++.+.|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 344589999999999988766554433 34444 55556667889999998888887776654445566688877666
Q ss_pred H-----hcCCc
Q 041894 152 A-----QSQNM 157 (219)
Q Consensus 152 ~-----~~g~~ 157 (219)
. -.|++
T Consensus 164 Ll~VLlPLG~~ 174 (309)
T PF07163_consen 164 LLHVLLPLGHF 174 (309)
T ss_pred HHHHHhccccH
Confidence 5 47888
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.11 E-value=11 Score=25.67 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 22 ~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
..++-++.+....+.|++.+..+.|.+|-|.+++..|.++|+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.09 E-value=21 Score=26.12 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=63.0
Q ss_pred HHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCc---ccHHHHHHHHhccc
Q 041894 48 IYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDH---NVFPSVLKSCTLLV 120 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~t~~~ll~~~~~~g 120 (219)
+.+..|+++.|++.|.+-- .. ...+||.--+++.-.|+.++|++=+.+-++- |-+ +. ..|.-=-.-|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 5678999999999998753 34 7789999999999999999999888886543 311 21 12222223344567
Q ss_pred ChhhHHHHHHHHHHhC
Q 041894 121 DFRFGESVHACIIRLG 136 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g 136 (219)
+.+.|+.=|+.-.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888777766
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.01 E-value=12 Score=29.99 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=49.3
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch---h------HHHHHhhhhccCCcchhhHH
Q 041894 109 FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD---M------HIYDRFQGFGFNGGREASVH 179 (219)
Q Consensus 109 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~---~------~~~~~~~~~~~~~g~~~~a~ 179 (219)
....|..|++.|++..|-..+..+.+. ++.+..-+..-|..|-..+++= . .++=....|...+|+.++|.
T Consensus 96 L~~aieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai 174 (288)
T KOG1586|consen 96 LEKAIEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAI 174 (288)
T ss_pred HHHHHHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888877777666555443 3556666667777777666551 0 02333555666777779999
Q ss_pred HHhhcCC
Q 041894 180 EVLDKIP 186 (219)
Q Consensus 180 ~l~~~m~ 186 (219)
++|++.-
T Consensus 175 ~iyeqva 181 (288)
T KOG1586|consen 175 DIYEQVA 181 (288)
T ss_pred HHHHHHH
Confidence 9998765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 219 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.89 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.87 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.72 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.39 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.39 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.38 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.36 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.32 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.3 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.29 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.28 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.28 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.25 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.24 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.2 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.19 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.18 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.18 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.14 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.12 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.12 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.12 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.11 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.11 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.1 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.07 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.05 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.05 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.03 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.02 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.02 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.0 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.87 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.82 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.82 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.8 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.78 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.78 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.77 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.76 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.73 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.72 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.71 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.64 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.56 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.51 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.48 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.48 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.46 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.45 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.39 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.39 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.38 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.37 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.37 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.37 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.36 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.35 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.34 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.25 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.23 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.21 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.16 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.15 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.11 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.07 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.07 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.07 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.06 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.05 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.04 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.04 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.04 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.03 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.0 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.98 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.98 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.96 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.96 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.96 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.95 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.95 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.95 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.94 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.91 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.91 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.9 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.89 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.89 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.88 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.86 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.86 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.85 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.85 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.83 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.8 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.77 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.74 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.73 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.71 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.69 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.67 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.62 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.6 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.6 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.55 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.54 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.47 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.43 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.42 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.33 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.3 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.25 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.2 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.2 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.19 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.16 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 97.1 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.02 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.98 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 96.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.96 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.93 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.9 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.82 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.8 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.7 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.69 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.68 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.53 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.48 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.48 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.24 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.21 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 96.17 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.09 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 96.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 95.97 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.76 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 95.66 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 95.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.63 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 95.61 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 95.46 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.07 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.04 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.69 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.63 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.24 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 94.09 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 93.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 93.68 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 93.55 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 93.31 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 93.01 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 92.81 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 91.59 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 91.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.09 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 90.99 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.88 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.41 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 90.24 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.13 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.82 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.68 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 89.31 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.86 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 88.39 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 88.36 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 88.36 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 88.28 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 88.27 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 87.49 | |
| 2nsz_A | 129 | Programmed cell death protein 4; PDCD4, tumor supp | 87.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.99 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.94 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 84.39 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.25 | |
| 2ion_A | 152 | PDCD4, programmed cell death 4, PDCD4; alpha-helic | 83.88 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.55 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 82.35 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 80.99 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=262.94 Aligned_cols=182 Identities=12% Similarity=0.055 Sum_probs=173.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC---------HHHHHHHHHhcC----CCCC
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL---------VHDSLCLLDTLK----TPAP 70 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~---------~~~A~~~~~~m~----~~~~ 70 (219)
...++.+|++|++.|+++.|.++|++|.+.|+.||.+|||+||.+|++.+. ++.|.++|++|. .| |
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-N 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-C
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-C
Confidence 356899999999999999999999999999999999999999999998664 788999999996 68 9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
.+|||+||++|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.++|++|.+.|+.||..||++||++
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC----CCCCeeehhHHHHHHhhhh
Q 041894 151 YAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP----ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 151 y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~----~~~~~~~~n~ll~~~~~~~ 205 (219)
|++.|++ ++|.++|++|+ .++ ..||++++..|+..+
T Consensus 185 ~~~~g~~------------------d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 185 SMDTKNA------------------DKVYKTLQRLRDLVRQVS-KSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCH------------------HHHHHHHHHHHHHTSSBC-HHHHHHHHHHHHSHH
T ss_pred HhhCCCH------------------HHHHHHHHHHHHhCCCcC-HHHHHHHHHHHhcCc
Confidence 9999999 99999999998 467 899999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=241.32 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCC---------
Q 041894 21 SQAKQLHAQIFKTLEPNSR-FLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGL--------- 86 (219)
Q Consensus 21 ~~a~~l~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~--------- 86 (219)
+.++.+...+.+.+..+.+ .+++.+|++|++.|++++|.++|++|+ .| |.+|||+||++|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4556777888888876554 468999999999999999999999997 68 99999999999998765
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhh
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~ 166 (219)
+++|.++|++|.+.|+.||..||+++|++|++.|+++.|.+++++|.+.|+.||..|||+||.+|++.|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~--------- 156 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA--------- 156 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH---------
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH---------
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcchhhHHHHhhcCC----CCCCeeehhHHHHHHhhhhH---------hHHHcCCCCCCcC
Q 041894 167 GFGFNGGREASVHEVLDKIP----ERNGNVELSSGLAGCNKFEK---------RVVSAGHDADLDA 219 (219)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~----~~~~~~~~n~ll~~~~~~~~---------~m~~~g~~pd~~~ 219 (219)
++|.++|++|. .|| ..|||+||.+|++.|+ +|++.|+.|+..|
T Consensus 157 ---------~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 157 ---------DKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp ---------HHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred ---------HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999998 457 8999999999999994 7999999998654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-24 Score=193.17 Aligned_cols=121 Identities=10% Similarity=0.046 Sum_probs=113.1
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCccc
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-------TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV 108 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 108 (219)
..-..|||+||++||+.|++++|.++|++|. .| |++|||+||++|++.|++++|.++|++|.+.|+.||.+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3345689999999999999999999998764 68 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCh-hhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 109 FPSVLKSCTLLVDF-RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 109 ~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|+++|+++|+.|.. +.|.+++++|.+.|+.||..+|++++.+..+.+-+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL 252 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH
Confidence 99999999999985 78999999999999999999999999999987666
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-23 Score=190.08 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=128.3
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHH---HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIF---KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKS 76 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~---~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~ 76 (219)
..|||++|++||+.|++++|..+|+.|. +.|+.||..|||+||++||+.|++++|.++|++|. .| |++|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 3689999999999999999999998876 45899999999999999999999999999999997 68 9999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc------HHHHHHHHH
Q 041894 77 IIRCCTQNGLL-VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD------LYTNNALMN 149 (219)
Q Consensus 77 li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~ 149 (219)
||+++++.|+. ++|.++|++|.+.|+.||..||+++|+++.+.+-++..+.+ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999999888876555444333 3355554 677778888
Q ss_pred HHHhcCC
Q 041894 150 MYAQSQN 156 (219)
Q Consensus 150 ~y~~~g~ 156 (219)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 8987763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=139.47 Aligned_cols=201 Identities=9% Similarity=-0.037 Sum_probs=166.7
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+..+|+.++.++.+.|+++.|..+|+.+.+.. +.+..+|+.+...|.+.|++++|.++|+++. .|.+..+|+.++.+
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46788899999999999999999999998654 5578889999999999999999999998874 33267899999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
|.+.|++++|.++|++|.+.+ +.+..+|..+..+|.+.|++++|.++++.+.+.. +.+..+|+.+..+|.+.|+++++
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999988653 4477889999999999999999999999988775 34778899999999999999887
Q ss_pred --HHHHh---------------------hhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 161 --IYDRF---------------------QGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 --~~~~~---------------------~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+.+ ...+++.|+.++|.++|+++.+ +++..+|..+...|.+.|+
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 34332 1223588999999999998763 4327889999999999985
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=138.50 Aligned_cols=198 Identities=9% Similarity=-0.084 Sum_probs=155.5
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|+.++..|.+.|+++.|.++|+++.+. +++..+|+.+..+|.+.|++++|..+|+++. .|.+..+|+.++.++
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence 456777788888888888888888888765 5788888888888888888888888888775 232678888888888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH- 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~- 160 (219)
.+.|++++|..+|+++.+.. +.+..+|..+...|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|+++++
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887432 3456788888888888888888888888887754 34577888888888888888877
Q ss_pred -HHHH--------------hhhhccCCcchhhHHHHhhcCCC---CCCeeehhHHHHHHhhhhH
Q 041894 161 -IYDR--------------FQGFGFNGGREASVHEVLDKIPE---RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 -~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~---~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+. +...+++.|++++|.++|+++.+ .+ ..+|+.+...|.+.|+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCC
Confidence 3443 22234578888999999998863 35 7889999999999984
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-11 Score=99.47 Aligned_cols=180 Identities=8% Similarity=-0.065 Sum_probs=145.0
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-RFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~ 80 (219)
|+..++..+...+...++.+.|...++.+.+.+..|+ ...+..+-..|.+.|++++|.+.++. .. +..++..+...
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~-~~~~~~~l~~~ 139 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GD-SLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CC-SHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CC-CHHHHHHHHHH
Confidence 4567788888889999999999999999998886564 45555566789999999999999998 44 78899999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHH----HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV----LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
+.+.|++++|.+.|+++.+. .|+.. ...+ +..+...|++++|..+++.+.+.. +.+...++.+-.+|.+.|+
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~--~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQ--DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHHHHHhh--CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999875 47653 2223 344445589999999999998874 5688899999999999999
Q ss_pred chhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhhH
Q 041894 157 MDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 157 ~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~~ 206 (219)
+ ++|++.|++.. .|++..+|+.+...+...|+
T Consensus 216 ~------------------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 216 W------------------EAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp H------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred H------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9 88888888755 34326677777777777764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-11 Score=100.48 Aligned_cols=198 Identities=12% Similarity=0.031 Sum_probs=127.1
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.++..+-..+.+.|+++.|...|.++.+.. +.+..+|..+-..|.+.|++++|...|+++. .|.+...|..+-..+.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 345555566677788888888888877654 3356677777778888888888888777654 2314556666666666
Q ss_pred hcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH- 160 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~- 160 (219)
..|++++|...|.+..+. .|+ ..++..+...+.+.|+++.|...++.+.+.. +.+..+|..+..+|.+.|+++.+
T Consensus 215 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp TTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 667777777666665542 343 4566666666666677777777666666543 22345666666666666766655
Q ss_pred -HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 161 -IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 -~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+. +....++.|+.++|.++|+++.+ ++...+|..+...|.+.|+
T Consensus 292 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 2322 22233466666888888887664 3224567777788777774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-11 Score=100.72 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=66.5
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.+|..+-..+.+.|+++.|...|+++.+.. +.+..+|..+...+.+.|++++|...|+++. .|.+..++..+-..+.
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344455555555555555555555554432 2223344445555555555555555544432 2212233344444444
Q ss_pred hcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
..|++++|.++|+++.+. .|+ ..+|..+...+.+.|+++.|...++.+.+.. +.+...|..+-..+...|+++.
T Consensus 147 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp TTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred HccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 444455555544444432 222 2344444444445555555555544444432 1123333344444444444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-11 Score=101.92 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=144.5
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+..++..+...+.+.|+++.|..+|+.+.+.. +.+..+|..+..+|.+.|++++|...|+.+. .|.+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45678888899999999999999999998764 5578899999999999999999999999875 34267899999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCc----ccHHHHHH------------HHhcccChhhHHHHHHHHHHhCCCccHHHH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDH----NVFPSVLK------------SCTLLVDFRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~------------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
|.+.|++++|..+|+++.+. .|+. ..+..+.. .+.+.|+++.|...++.+.+.. +.+...+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 99999999999999999874 4543 45555544 3888999999999999998775 4578889
Q ss_pred HHHHHHHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCC
Q 041894 145 NALMNMYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
..+..+|.+.|+++.+ +|+. +...+.+.|+.++|.+.|+++.
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999666 2322 2222346677777777777655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-11 Score=99.57 Aligned_cols=156 Identities=7% Similarity=-0.029 Sum_probs=133.3
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh---hhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP---VAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~---~~~~~l 77 (219)
+..+|..+..++.+.|+++.|...|+++.+.+ +.+..++..+...|.+.|++++|...|+.+. .|.+. .+|..+
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 137 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 137 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 56788899999999999999999999999876 4468889999999999999999999999875 34134 667766
Q ss_pred HHH------------HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 78 IRC------------CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 78 i~~------------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
+.. +...|++++|...|+++.+.. +.+...+..+...|.+.|+++.|..+++.+.+.. +.+..++.
T Consensus 138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 554 889999999999999988642 3356788999999999999999999999988775 45688999
Q ss_pred HHHHHHHhcCCchhHH
Q 041894 146 ALMNMYAQSQNMDMHI 161 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~ 161 (219)
.+..+|.+.|+++.++
T Consensus 216 ~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 216 KISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHH
Confidence 9999999999998874
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-10 Score=86.63 Aligned_cols=181 Identities=10% Similarity=0.001 Sum_probs=146.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+-..+.+.|+++.|...+..+.+.. +.+...+..+...|...|++++|...++... .|.+..+|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 5677788888999999999999999998865 4467889999999999999999999998764 332678899999999
Q ss_pred Hhc-CChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 82 TQN-GLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 82 ~~~-g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
... |++++|...|++..+.+..|+ ...+..+...+...|+++.|...+....+.. +.+...+..+..+|.+.|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~-- 163 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL-- 163 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH--
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH--
Confidence 999 999999999999888433444 4678888899999999999999999988775 34577889999999999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCC----CCCeeehhHHHHHHhhhh
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPE----RNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~----~~~~~~~n~ll~~~~~~~ 205 (219)
++|.++|++..+ .+ ...|..+...+.+.|
T Consensus 164 ----------------~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 164 ----------------GDADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALG 196 (225)
T ss_dssp ----------------HHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTT
T ss_pred ----------------HHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcC
Confidence 888888876552 23 455555555555554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-10 Score=89.53 Aligned_cols=182 Identities=11% Similarity=0.041 Sum_probs=145.7
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...|..+-..+...|+++.|...|+++.+.. +.+...+..+-..|.+.|++++|...|++.. .|.+..+|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4567777788899999999999999998875 4467888999999999999999999998764 232778899999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
...|++++|.++|++..+.+..|+ ...+..+...+...|++++|...+....+.. +.+...+..+...|.+.|++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~--- 191 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY--- 191 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH---
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH---
Confidence 999999999999999887545563 5677888889999999999999999988775 34577889999999999999
Q ss_pred HHHHhhhhccCCcchhhHHHHhhcCCCC--CCeeehhHHHHHHhhhh
Q 041894 161 IYDRFQGFGFNGGREASVHEVLDKIPER--NGNVELSSGLAGCNKFE 205 (219)
Q Consensus 161 ~~~~~~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~n~ll~~~~~~~ 205 (219)
++|.++|++..+. +....|..+...|.+.|
T Consensus 192 ---------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 192 ---------------VPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223 (252)
T ss_dssp ---------------HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc
Confidence 7777777765432 11344555555555555
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=6e-12 Score=107.18 Aligned_cols=182 Identities=7% Similarity=0.062 Sum_probs=87.1
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~ 81 (219)
||..+|..++.++.+.|++++|...++..++. .+++.+.+.|+.+|.+.|+++++.++++ .| +..+|+.+-.+|
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~p-n~~a~~~IGd~~ 132 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GP-NNAHIQQVGDRC 132 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT---CC-------------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CC-cHHHHHHHHHHH
Confidence 57788999999999999999999977777664 5567889999999999999999888876 57 778999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
...|++++|..+|..+ ..|.-+.+++.+.|+++.|.+.+... .+..+|..++.++...|+++.|+
T Consensus 133 ~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp ----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 9999999999999876 48889999999999999999888877 36789999999999999888772
Q ss_pred ------------HHHhhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHhhh
Q 041894 162 ------------YDRFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCNKF 204 (219)
Q Consensus 162 ------------~~~~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~~~ 204 (219)
...+..++.+.|.+++|..+++.....+ -...|+-+--.|++-
T Consensus 198 ~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 198 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 1224455668888899988888654322 033455554455443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-13 Score=113.02 Aligned_cols=170 Identities=9% Similarity=0.030 Sum_probs=46.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
+.|++++|.++++++ +++.+|+.|..++.+.|++++|++.|.. .+ |..+|..+++++...|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~-D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--AD-DPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 447788888888877 2334788888888888888888888864 34 66788888888888888888888666
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH------hhh
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR------FQG 167 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~------~~~ 167 (219)
..++. .++..+.+.++.+|.+.|++++++++++ .|+..+|+.+-..|...|++++| .|.. +..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~ 156 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAS 156 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTTCHHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHH
Confidence 55553 4556778888888888888887777764 36667888888888888888877 3444 444
Q ss_pred hccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH
Q 041894 168 FGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~ 206 (219)
.+++.|+++.|.+.+.+. .+ +.+|..++.+|+..|+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~-~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NS-TRTWKEVCFACVDGKE 192 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TC-HHHHHHHHHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHHc--CC-chhHHHHHHHHHHcCc
Confidence 456888889999999998 36 8899999999999883
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=96.34 Aligned_cols=200 Identities=10% Similarity=-0.031 Sum_probs=150.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...|..+-..+.+.|+++.|..+|+++.+.. +.+..+|..+-..|.+.|++++|...|++.. .|.+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777788899999999999999998875 4578899999999999999999999998865 342688999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCC-----------cccHHHHHHHHhcccChhhHHHHHHHHHHhCCC-ccHHHHHHHHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPD-----------HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-LDLYTNNALMN 149 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~ 149 (219)
...|++++|...|+++.+.. |+ ...+..+...+.+.|+++.|...++.+.+.... ++..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999987632 22 223334577888889999999999888777533 26778888889
Q ss_pred HHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 150 MYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 150 ~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|.+.|+++.+ .|+. +...+.+.|+.++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 99999998877 2333 33334578888999999987653 3326678888888888774
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-10 Score=88.27 Aligned_cols=183 Identities=15% Similarity=0.025 Sum_probs=149.1
Q ss_pred CC-ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHH
Q 041894 1 MT-STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSI 77 (219)
Q Consensus 1 ~P-~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~l 77 (219)
|| +...+..+-..+.+.|+++.|...|++..+.. +.+...+..+-..+.+.|++++|...|+... .|.+..+|..+
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 44 56777778888999999999999999998765 4577888899999999999999999998764 44367889999
Q ss_pred HHHHHhc-----------CChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 78 IRCCTQN-----------GLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 78 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
-..+... |++++|...|++..+. .|+ ...+..+-..+...|++++|...++...+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 9999999 9999999999998764 465 4577788888999999999999999998887 7788899
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhhH
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~~ 206 (219)
.+-.+|...|++ ++|.+.|++.. .|++...+..+-..+.+.|+
T Consensus 156 ~la~~~~~~g~~------------------~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 156 ALAELYLSMGRL------------------DEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHTCH------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHcCCH------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 999999999999 88888888765 33325667777777777764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.7e-10 Score=90.84 Aligned_cols=200 Identities=12% Similarity=0.001 Sum_probs=152.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...+..+-..+.+.|+++.|...|.++.+.. +.+..++..+-..|.+.|++++|...|+... .|.+..+|..+...+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677778889999999999999999875 4577889999999999999999999998764 332788999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcc-cHHH---------------HHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHN-VFPS---------------VLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTN 144 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~---------------ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~ 144 (219)
...|++++|...|+++.+.. |+.. .+.. .+..+...|+++.|...++.+.+..... +..++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999988653 3321 2211 2344447888999999988887765332 57788
Q ss_pred HHHHHHHHhcCCchhHH--HHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 145 NALMNMYAQSQNMDMHI--YDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~~--~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
..+...|.+.|+++.++ |+. +...+.+.|+.++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 88888999999988772 333 22334578888999999987652 3326678888888877774
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-10 Score=87.61 Aligned_cols=152 Identities=10% Similarity=0.067 Sum_probs=94.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+-..+.+.|+++.|..+|+++.+.. +.+...+..+-..|.+.|++++|...|+... .|.+..+|..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455566667777788888888888777643 3356677777777888888888888877653 221567777777888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
...|++++|.++|++..+.. +.+...+..+...+.+.|+++.|...++...+.. +.+...+..+...|.+.|+++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 88888888888887776542 2345567777777778888888888877776654 335667777777788888883
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-09 Score=84.38 Aligned_cols=164 Identities=5% Similarity=-0.089 Sum_probs=139.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC----CCChhhHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT----PAPPVAWKSII 78 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~li 78 (219)
+..++..+-..+.+.|+++.|...+.++.+.. +.+...+..+...|.+.|++++|.+.|+.... |.+...|..+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 45677888889999999999999999998875 44678899999999999999999999998754 31457788899
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
..+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. ..+...+..+...|.+.|+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~- 225 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR- 225 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH-
Confidence 99999999999999999987643 2346688889999999999999999999987764 35677888899999999999
Q ss_pred hHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 159 MHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.++++++.+
T Consensus 226 -----------------~~A~~~~~~~~~ 237 (252)
T 2ho1_A 226 -----------------DTAASYGLQLKR 237 (252)
T ss_dssp -----------------HHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHH
Confidence 999999988763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-09 Score=82.93 Aligned_cols=163 Identities=10% Similarity=-0.053 Sum_probs=140.1
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIR 79 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~ 79 (219)
+..++..+-..+.+.|+++.|...+.++.+.. +.+..++..+...|...|++++|...++... .. +..+|..+..
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 133 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGT 133 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45677788888999999999999999998875 4477888999999999999999999998764 34 7788999999
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
.+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. ..+..++..+..+|.+.|++
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~-- 209 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENR-- 209 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCT--
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCH--
Confidence 9999999999999999987642 2356688888999999999999999999988775 34677899999999999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.+.|++..+
T Consensus 210 ----------------~~A~~~~~~~~~ 221 (243)
T 2q7f_A 210 ----------------EKALEMLDKAID 221 (243)
T ss_dssp ----------------THHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHc
Confidence 999999988763
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-09 Score=80.71 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=138.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-CCHHHHHHHHHhcCC----CCChhhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLDTLKT----PAPPVAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~----~~~~~~~~~l 77 (219)
+..+|..+...+...|+++.|...++.+.+.. +.+..++..+...|... |++++|...++.... |.+..+|..+
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 35678888889999999999999999998875 44678899999999999 999999999988643 2135788999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
...+...|++++|...|++..+.. +.+...+..+...+.+.|+++.|...++...+.....+...+..+...+...|+.
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 999999999999999999987642 2246678888999999999999999999988776425677788888899999999
Q ss_pred hhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 158 DMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 158 ~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+.|..+++.+.
T Consensus 199 ------------------~~a~~~~~~~~ 209 (225)
T 2vq2_A 199 ------------------QAAYEYEAQLQ 209 (225)
T ss_dssp ------------------HHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHH
Confidence 99999888765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.5e-09 Score=82.58 Aligned_cols=197 Identities=10% Similarity=-0.007 Sum_probs=136.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+-..+...|+++.|...|.++.+.. +.+..+|..+-..|.+.|++++|...|+... .|.+..+|..+-..|
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 4567777778888888888888888887765 3467788888888888888888888887764 232677888888888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
.+.|++++|...|++..+. .|+.......+..+...|+++.|...+....... .++...+. +...+...++.+.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHH
Confidence 8888888888888887763 4666555556666677788888888887766553 23333333 555555555554331
Q ss_pred --H------------------HHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH
Q 041894 162 --Y------------------DRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 --~------------------~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~ 206 (219)
+ ..+.....+.|+.++|.+.|++....+ +..|.....++.+.|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~l~~ 261 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNFVEHRYALLELSL 261 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHH
Confidence 1 113333457788899999999877665 5445555555555554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-09 Score=79.63 Aligned_cols=161 Identities=13% Similarity=-0.024 Sum_probs=135.5
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..|..+-..+.+.|+++.|...++.+.+.. +.+..++..+...|...|++++|...++... .|.+..+|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667778889999999999999887654 3467888999999999999999999998764 3326788999999999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
..|++++|.+.|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...|.+.|++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~----- 160 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRH----- 160 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH-----
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCH-----
Confidence 9999999999999987652 3456778888899999999999999999988775 34678899999999999999
Q ss_pred HHhhhhccCCcchhhHHHHhhcCC
Q 041894 163 DRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 163 ~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++|.+.+++..
T Consensus 161 -------------~~A~~~~~~~~ 171 (186)
T 3as5_A 161 -------------EEALPHFKKAN 171 (186)
T ss_dssp -------------HHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHH
Confidence 99999888755
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-09 Score=85.57 Aligned_cols=197 Identities=7% Similarity=-0.145 Sum_probs=138.4
Q ss_pred ChhHHHHHHhCccccC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 3 STKTLINLLKNPVSIK-TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
+..+|..+-..+...| +++.|...|+...+.. +.+...|..+-..|...|++++|...|+... .|.+..++..+-.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3556677777777888 8888888888887654 3356677888888888888888888887764 2314567777888
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC--------CCccHHHHHHHHHHH
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG--------VDLDLYTNNALMNMY 151 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g--------~~~~~~~~~~ll~~y 151 (219)
.+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. ...+..++..+-.+|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 8888888888888888876542 2345677777888888888888888888766542 133456778888888
Q ss_pred HhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCCC--CCeeehhHHHHHH
Q 041894 152 AQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPER--NGNVELSSGLAGC 201 (219)
Q Consensus 152 ~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~n~ll~~~ 201 (219)
.+.|+++.+ .|+. +...+.+.|+.++|.+.|++..+. ++...+..+...+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 888888766 2332 223334677779999999987743 2144555555555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.6e-09 Score=77.32 Aligned_cols=166 Identities=10% Similarity=0.023 Sum_probs=139.7
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
++..|..+=..+.+.|+++.|...|++..+.. +-+..++..+-..|.+.|++++|...+.... .|.+...+..+-..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46778888889999999999999999998875 4477889999999999999999999998764 33267788888899
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+...++++.|...+.+..+.. +-+...+..+-..+.+.|++++|...++...+.. +.+...|..+-.+|.+.|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~--- 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR--- 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH---
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH---
Confidence 999999999999999876542 2245678888889999999999999999988875 34677899999999999999
Q ss_pred HHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 161 IYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 161 ~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
++|.+.|++..+.+
T Consensus 158 ---------------~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 ---------------DEAVKYFKKALEKE 171 (184)
T ss_dssp ---------------HHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHhCC
Confidence 99999998765443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-09 Score=84.72 Aligned_cols=200 Identities=8% Similarity=-0.043 Sum_probs=161.8
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
..++..+...+.+.|+++.|..++.++.+.. +.+...|..+-..|...| ++++|...|+... .|.+..+|..+...
T Consensus 56 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 134 (330)
T 3hym_B 56 ASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS 134 (330)
T ss_dssp TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3456667778889999999999999998865 446778889999999999 9999999998864 33267889999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+...|++++|...|++..+.. +.+...+..+-..|...|+++.|...++...+.. +.+...+..+...|.+.|+++.+
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 999999999999999987653 2345677788899999999999999999988765 45678899999999999999988
Q ss_pred --HHHH-----------------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 161 --IYDR-----------------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 --~~~~-----------------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+. +.....+.|+.++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 3333 11223478999999999998652 3326778888888888875
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-09 Score=82.91 Aligned_cols=162 Identities=8% Similarity=-0.039 Sum_probs=127.0
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-----------CCHHHHHHHHHhcC--CCC
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-----------NLVHDSLCLLDTLK--TPA 69 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~m~--~~~ 69 (219)
+...|..+-..+.+.|+++.|...+++..+.. +.+...+..+-..|.+. |++++|...|+... .|.
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 116 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc
Confidence 35667777788899999999999999999876 44677888888899999 99999999998764 443
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
+..+|..+=..+...|++++|...|++..+.. .+...+..+-..+...|++++|...++...+.. +.+...+..+-.
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~ 193 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYAS 193 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 67889999999999999999999999988766 677888899999999999999999999988875 346778888999
Q ss_pred HHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 150 MYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 150 ~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+|.+.|++ ++|.+.|++..
T Consensus 194 ~~~~~g~~------------------~~A~~~~~~~~ 212 (217)
T 2pl2_A 194 ALLLKGKA------------------EEAARAAALEH 212 (217)
T ss_dssp HHTC---------------------------------
T ss_pred HHHHccCH------------------HHHHHHHHHHh
Confidence 99999999 99998887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-09 Score=83.71 Aligned_cols=182 Identities=8% Similarity=-0.047 Sum_probs=136.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CC---C----hhhH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PA---P----PVAW 74 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~---~----~~~~ 74 (219)
..+|..+-..+.+.|+++.|...|....+.. .+...+..+-..|.+.|++++|...|..... |. + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777788889999999999999999888 7888999999999999999999999987641 10 1 5789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCC------------------------CCC-CcccHHHHHHHHhcccChhhHHHHH
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGSG------------------------VYP-DHNVFPSVLKSCTLLVDFRFGESVH 129 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~g------------------------~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 129 (219)
..+-..+...|++++|...|++..+.. ..| +...+..+-..+...|+++.|...+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999987632 223 2345666666777777788887777
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 130 ~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
+...+.. +.+...+..+-.+|.+.|++ ++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 163 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~------------------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 163 TEMIKRA-PEDARGYSNRAAALAKLMSF------------------PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHhCCH------------------HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 7776654 33566777777777777777 777777776542 2214556666666666553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-09 Score=84.86 Aligned_cols=198 Identities=10% Similarity=0.043 Sum_probs=149.9
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..+...-..+.+.|+++.|..+|+++.+.. +.+...+..+-..|.+.|++++|...|+... .|.+..+|..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345556667788999999999999998865 4477888889999999999999999998764 3326788999999999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcc-cHHHH--------------HH-HHhcccChhhHHHHHHHHHHhCCCccHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHN-VFPSV--------------LK-SCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l--------------l~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 146 (219)
..|++++|.+.|++..+. .|+.. .+..+ -. .+...|+++.|...++...+.. +.+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 999999999999998765 33332 33222 12 3778899999999999988775 346788888
Q ss_pred HHHHHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 147 LMNMYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 147 ll~~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
+...|.+.|+++.+ .|+. +.....+.|+.++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999877 2333 22334578899999999987652 3225677778888877774
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-09 Score=85.69 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=144.5
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHH----
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKS---- 76 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~---- 76 (219)
+..+|..+-..+.+.|+++.|...|..+.+.. +.+..++..+...|.+.|++++|...|+.+. .|.+...+..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 45678888889999999999999999998876 4578889999999999999999999998764 2212222221
Q ss_pred -----------HHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHH
Q 041894 77 -----------IIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 77 -----------li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
.+..+...|++++|...|+++.+.. -.++..++..+...+.+.|+++.|...++...+.. +.+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 2334447778888888888776542 11135677777778888888888888888776664 3356677
Q ss_pred HHHHHHHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCC-----------eeehh
Q 041894 145 NALMNMYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNG-----------NVELS 195 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~-----------~~~~n 195 (219)
..+...|.+.|+++.+ .|+. +...+.+.|+.++|.+.|++..+ ++. ...|.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 7788888888888776 2333 22233467888999999987652 221 35688
Q ss_pred HHHHHHhhhhH
Q 041894 196 SGLAGCNKFEK 206 (219)
Q Consensus 196 ~ll~~~~~~~~ 206 (219)
.+..+|.+.|+
T Consensus 335 ~l~~~~~~~g~ 345 (368)
T 1fch_A 335 TLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 88888888875
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.8e-09 Score=85.43 Aligned_cols=201 Identities=11% Similarity=0.008 Sum_probs=142.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCCh---------
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPP--------- 71 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~--------- 71 (219)
+..+|..+-..+.+.|+++.|...|+++.+.. +.+..++..+-..|.+.|++++|...|+.... |.+.
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 176 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc
Confidence 46778888899999999999999999998875 44678899999999999999999999987641 2011
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 72 -VAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 72 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
..+..+...+.+.|++++|..+|+++.+.. -.++..++..+...+.+.|+++.|...++...+.. +.+..+|..+..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 255 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGA 255 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 223345677788888888888888876542 11245677788888888888888888888877764 345678888888
Q ss_pred HHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCCC---------------CCeeehhHHH
Q 041894 150 MYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPER---------------NGNVELSSGL 198 (219)
Q Consensus 150 ~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~~---------------~~~~~~n~ll 198 (219)
+|.+.|+++.+ .|+. +...+.+.|+.++|.+.|++..+. + ...|..+-
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~l~ 334 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS-GNIWAALR 334 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-------------CHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhH-HHHHHHHH
Confidence 88888888777 2333 333345778889999999876521 2 34577777
Q ss_pred HHHhhhhH
Q 041894 199 AGCNKFEK 206 (219)
Q Consensus 199 ~~~~~~~~ 206 (219)
.++...|+
T Consensus 335 ~~~~~~g~ 342 (365)
T 4eqf_A 335 IALSLMDQ 342 (365)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCc
Confidence 77777774
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.4e-09 Score=88.48 Aligned_cols=199 Identities=8% Similarity=-0.116 Sum_probs=158.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..++..+-..+.+.|+++.|...|..+.+..-. ...+..+...|.+.|++++|...++... .|.+..+|..+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 456777778899999999999999999887633 8888999999999999999999998764 232678899999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH- 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~- 160 (219)
...|++++|...|++..+.. +.+...+..+...+...|+++.|...+....+.. +.+...+..+...|.+.|+++.+
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999987653 2356688888999999999999999999988765 34567888999999999999877
Q ss_pred -HHHH--------------------hhhhccC---CcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 161 -IYDR--------------------FQGFGFN---GGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 -~~~~--------------------~~~~~~~---~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+. +.....+ .|+.++|.+.|++... ++....|..+-..|.+.|+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 2333 1112246 8999999999987652 3325677777788877774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.9e-09 Score=83.95 Aligned_cols=158 Identities=9% Similarity=-0.013 Sum_probs=126.0
Q ss_pred CChh-HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhH---H
Q 041894 2 TSTK-TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAW---K 75 (219)
Q Consensus 2 P~~~-~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~---~ 75 (219)
|+.. .+..+-..+.+.|+++.|...+++ +.+...+..+...|.+.|++++|...|+.+. .| +.... .
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~l~~ 170 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE-DATLTQLAT 170 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-CcHHHHHHH
Confidence 5433 344444788899999999999987 5678899999999999999999999999886 45 43211 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g 155 (219)
+++..+...|++++|..+|+++.+. .+.+...++.+-.++.+.|++++|...++...+.. +.+..++..+...+...|
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 2334444568999999999999876 34567788999999999999999999999988775 346778999999999999
Q ss_pred CchhHHHHHhhhhccCCcchhh-HHHHhhcCC
Q 041894 156 NMDMHIYDRFQGFGFNGGREAS-VHEVLDKIP 186 (219)
Q Consensus 156 ~~~~~~~~~~~~~~~~~g~~~~-a~~l~~~m~ 186 (219)
+. ++ +.+++++..
T Consensus 249 ~~------------------~eaa~~~~~~~~ 262 (291)
T 3mkr_A 249 KP------------------PEVTNRYLSQLK 262 (291)
T ss_dssp CC------------------HHHHHHHHHHHH
T ss_pred CC------------------HHHHHHHHHHHH
Confidence 99 65 567887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-09 Score=83.48 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=131.8
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
.+...|+++.|...+..+.+.. +.+..++..+-..|.+.|++++|...++... .|.+..+|..+...+...|++++|
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 4788899999999999998876 4478889999999999999999999998764 332678899999999999999999
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-----------cHHHHHHHHHHHHhcCCchh
Q 041894 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-----------DLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-----------~~~~~~~ll~~y~~~g~~~~ 159 (219)
...|++..+.. +.+...+..+...+.+.|+++.|...++...+..... +...|..+..+|.+.|+.
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 302 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP-- 302 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH--
Confidence 99999987642 2346788899999999999999999999987765442 578999999999999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++|.+++++..
T Consensus 303 ----------------~~A~~~~~~~l 313 (327)
T 3cv0_A 303 ----------------DLVELTYAQNV 313 (327)
T ss_dssp ----------------HHHHHHTTCCS
T ss_pred ----------------HHHHHHHHHHH
Confidence 99999988654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-08 Score=82.48 Aligned_cols=154 Identities=11% Similarity=0.025 Sum_probs=124.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
|...+..+-..+.+.|+++.|...|+.+.+.. +.+..++..+-..|.+.|++++|...|+... .|.+..+|..+-..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45567777778889999999999999998865 4467888999999999999999999998764 33267889999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCC---C-cccHHHH------------HHHHhcccChhhHHHHHHHHHHhCCCccHHHH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYP---D-HNVFPSV------------LKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p---~-~~t~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
+...|++++|...|++..+. .| + ...+..+ ...+...|+++.|...++...+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 99999999999999998764 45 2 3334333 477888999999999999988775 3567788
Q ss_pred HHHHHHHHhcCCchhH
Q 041894 145 NALMNMYAQSQNMDMH 160 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~ 160 (219)
..+-..|.+.|+++.+
T Consensus 158 ~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKA 173 (359)
T ss_dssp HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCHHHH
Confidence 8899999999999433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-08 Score=85.90 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=35.2
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
|+..+|..+..++.+.|+++.|...++.+.+.. +.+..+|..+..+|.+.|++++|...|+.+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555555666666666666666555543 234445555555566666666655555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-08 Score=78.73 Aligned_cols=164 Identities=10% Similarity=-0.034 Sum_probs=134.5
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcC--CCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhcCC---------
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTL--EPNS----RFLISRLLFIYNNFNLVHDSLCLLDTLKT--------- 67 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g--~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--------- 67 (219)
+..+|..+-..+.+.|+++.|...+....+.. ..++ ..++..+-..|.+.|++++|...|+....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 116 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence 45677888888999999999999999988754 2222 57888899999999999999999887542
Q ss_pred -----------------C--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHH
Q 041894 68 -----------------P--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128 (219)
Q Consensus 68 -----------------~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 128 (219)
. .+...|..+-..+...|++++|...|++..+.. +.+..+|..+-..+.+.|+++.|...
T Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 1 134678888999999999999999999987643 33567888899999999999999999
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 129 ~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++...+.. +.+...|..+-.+|.+.|++ ++|.+.|++..
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~------------------~~A~~~~~~a~ 234 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEY------------------ASALETLDAAR 234 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhH------------------HHHHHHHHHHH
Confidence 99988875 34578899999999999999 88888887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-08 Score=69.10 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=105.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
+|..+...+.+.|+++.|..++..+.+.. +.+...+..+...+...|++++|...|+.+. .|.+...|..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56677778888999999999999988765 3467788888889999999999999998764 23267788889999999
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.|++++|.++|+++.+.. +.+...+..+...+.+.|+++.|...+..+.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999999999999987643 2345678888889999999999999998887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-08 Score=68.62 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
.|..+...|.+.|++++|..+|+.+. .|.+..+|..+...+...|++++|..+|+++.+.. +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56778888999999999999998864 23267889999999999999999999999987653 3345678888899999
Q ss_pred ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.|+++.|...++.+.+.. +.+...+..+...|.+.|++ ++|.+.|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~------------------~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDY------------------DEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH------------------HHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccH------------------HHHHHHHHHHH
Confidence 999999999999988875 34577888899999999999 99999988764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9.8e-08 Score=82.10 Aligned_cols=197 Identities=8% Similarity=-0.100 Sum_probs=148.1
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
+|..+-..+...|+++.|...|....+.. |+...+..+-..|.+.|++++|...|+... .|.+..+|..+...+..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 45555567778889999999999888764 557778888888899999999999988764 23267888888899999
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--H
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--I 161 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~ 161 (219)
.|++++|...|++..+.. +-+...+..+...+...|+++.|...++...+.. +.+...+..+-..|.+.|+++.+ .
T Consensus 323 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999998877642 2245678888888889999999999998887765 34566888888889999999877 3
Q ss_pred HHHhh--------------------hhccCC----------cchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhhH
Q 041894 162 YDRFQ--------------------GFGFNG----------GREASVHEVLDKIP--ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 ~~~~~--------------------~~~~~~----------g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~~ 206 (219)
|+... ....+. |+.++|.+.|++.. .++....|..+-..|.+.|+
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 44311 111223 88899999998766 23325677777788877774
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=74.31 Aligned_cols=191 Identities=9% Similarity=-0.054 Sum_probs=145.1
Q ss_pred CccccCChhHHHHHHHHHHHcCCC---CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEP---NSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~ 87 (219)
.....++++.|...|+++.+.... .+..++..+-..|...|++++|...|+... .|.+..+|..+-..+...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 456678999999999999987421 246688899999999999999999998864 332688999999999999999
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH-
Q 041894 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR- 164 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~- 164 (219)
++|...|++..+.. +.+...+..+-..+.+.|+++.|...++...+.. |+......++..+.+.|+++.+ .|+.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999987642 2356788899999999999999999999998865 4444555555666777888776 2322
Q ss_pred ------------hhhhccCCcchhhHHHHhhcCCCCCC------eeehhHHHHHHhhhhH
Q 041894 165 ------------FQGFGFNGGREASVHEVLDKIPERNG------NVELSSGLAGCNKFEK 206 (219)
Q Consensus 165 ------------~~~~~~~~g~~~~a~~l~~~m~~~~~------~~~~n~ll~~~~~~~~ 206 (219)
+.......++.++|.+.+++....+. ...|..+-..|.+.|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 22333466677888888887775530 2456666677766664
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.2e-08 Score=78.51 Aligned_cols=163 Identities=6% Similarity=-0.105 Sum_probs=135.1
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--C---CChhhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--P---APPVAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~---~~~~~~~~l 77 (219)
+..++..+-..+.+.|+++.|...++.+.+.. +.+...+..+-..|.+.|++++|...|+.... | .+...+..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 35678888889999999999999999998875 34678899999999999999999999998753 2 144455544
Q ss_pred ------------HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 78 ------------IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 78 ------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
...+...|++++|..+|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+.
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 192 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 578899999999999999987652 3356788889999999999999999999988765 45678899
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+...|.+.|++ ++|.+.|++..
T Consensus 193 ~la~~~~~~~~~------------------~~A~~~~~~a~ 215 (359)
T 3ieg_A 193 KISTLYYQLGDH------------------ELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCCH------------------HHHHHHHHHHH
Confidence 999999999999 88888887655
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-07 Score=85.35 Aligned_cols=150 Identities=12% Similarity=0.063 Sum_probs=130.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|+.+=..+.+.|++++|...|++.++.. +-+...|+.|=..|.+.|++++|+..|++.. .|.+..+|+.+=..|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5678888889999999999999999998875 3367889999999999999999999998754 442688999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
...|++++|.+.|++..+. .|+ ...|..+-..|.+.|++++|...++...+.. .-+...+..|..+|...|++
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 9999999999999997763 565 4688899999999999999999999988875 23577899999999999999
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-07 Score=76.64 Aligned_cols=170 Identities=8% Similarity=-0.026 Sum_probs=122.5
Q ss_pred ccCCh-------hHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChh-hHHHHHHHHHhcC
Q 041894 16 SIKTK-------SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPV-AWKSIIRCCTQNG 85 (219)
Q Consensus 16 ~~~~~-------~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~-~~~~li~~~~~~g 85 (219)
+.|++ +.|..+|++..+.--+-+...|..+...+.+.|++++|..+|+... .|.+.. +|..+...+.+.|
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 148 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 148 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence 35775 8999999998873223456689999999999999999999998764 341344 8999999999999
Q ss_pred ChhHHHHHHHHhHhCCCCCCcccHHHHHHHH-hcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHH
Q 041894 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSC-TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~ 164 (219)
++++|..+|+...+.. +++...|....... ...|+.+.|..+++...+.. +.+...|..++..+.+.|++
T Consensus 149 ~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~------- 219 (308)
T 2ond_A 149 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNED------- 219 (308)
T ss_dssp CHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCH-------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCH-------
Confidence 9999999999987653 22333443332222 23689999999999877664 34677888999999999999
Q ss_pred hhhhccCCcchhhHHHHhhcCCCC---C---CeeehhHHHHHHhhhh
Q 041894 165 FQGFGFNGGREASVHEVLDKIPER---N---GNVELSSGLAGCNKFE 205 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~~---~---~~~~~n~ll~~~~~~~ 205 (219)
++|+.+|++.... + ....|..++..+.+.|
T Consensus 220 -----------~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 220 -----------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp -----------HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred -----------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 7777777765431 1 1335666666655555
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=81.72 Aligned_cols=181 Identities=9% Similarity=-0.076 Sum_probs=135.7
Q ss_pred ChhHHHHHHhCccccCCh-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTK-SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~-~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
+...+..+=..+...|++ +.|...|.+..+.. +.+...|..+-..|.+.|++++|...|+... .| +..+|..+-.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CHHHHHHHHH
Confidence 345566666778888888 99999998888765 3357788888888899999999999888754 56 6777888888
Q ss_pred HHHhc---------CChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcc--------cChhhHHHHHHHHHHhCCC--c
Q 041894 80 CCTQN---------GLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLL--------VDFRFGESVHACIIRLGVD--L 139 (219)
Q Consensus 80 ~~~~~---------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~--~ 139 (219)
.+... |++++|...|++..+. .| +...|..+-.+|... |++++|...++...+.... .
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 8899999999887654 34 356777788888877 8899999988888776421 3
Q ss_pred cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhh
Q 041894 140 DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 140 ~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~ 205 (219)
+...|..+-.+|.+.|++ ++|.+.|++.. .++....|..+-..+...|
T Consensus 257 ~~~~~~~lg~~~~~~g~~------------------~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESY------------------GEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp CHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 677888888888888988 88888887654 2331445555555555555
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-07 Score=79.40 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=118.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
++..+-..+...|++++|...|+... .| +..+|..+-..+...|++++|...|++..+.. +.+..+|..+-..+..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 46666678899999999999998875 67 77888999999999999999999999987643 2346788889999999
Q ss_pred ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHh
Q 041894 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVL 182 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~ 182 (219)
.|+++.|...++...+.. +.+...+..+-.+|.+.|+++.+ .|+. +...+.+.|+.++|.+.|
T Consensus 323 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999988875 33567889999999999999988 3433 333346899999999999
Q ss_pred hcCC
Q 041894 183 DKIP 186 (219)
Q Consensus 183 ~~m~ 186 (219)
++..
T Consensus 402 ~~a~ 405 (537)
T 3fp2_A 402 DIAK 405 (537)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=8e-08 Score=76.48 Aligned_cols=165 Identities=17% Similarity=0.143 Sum_probs=130.5
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHc-------CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-------C-
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKT-------LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-------P- 68 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-------~- 68 (219)
..++..+-..+...|+++.|..++.++.+. .......++..+-..|...|++++|...+++... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467888888999999999999999999874 2334566788889999999999999999887531 1
Q ss_pred --CChhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----
Q 041894 69 --APPVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL---- 135 (219)
Q Consensus 69 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 135 (219)
....+|..+-..|...|++++|...|++..+. +-.| ....+..+-..+...|+++.|...++...+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 03467888999999999999999999997653 2223 3456788888999999999999999997765
Q ss_pred --CCCc-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 136 --GVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 136 --g~~~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+-.| ...++..+-.+|.+.|++ ++|.++|++..
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~------------------~~A~~~~~~al 222 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKF------------------KQAETLYKEIL 222 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHH
Confidence 2233 456788899999999999 77777766544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-07 Score=66.94 Aligned_cols=148 Identities=5% Similarity=-0.041 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
...+..+-..+...|++++|...|+.... |.+..+|..+...+...|++++|..+|++..+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567778889999999999999998762 3267889999999999999999999999987652 33566788888999
Q ss_pred hcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeeh
Q 041894 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVEL 194 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~ 194 (219)
...|+++.|...++...+.. +.+...+..+...|.+.|++ ++|.++|++..+ ++....|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~------------------~~A~~~~~~~~~~~~~~~~~~ 147 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRF------------------DEAIDSFKIALGLRPNEGKVH 147 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcH------------------HHHHHHHHHHHhcCccchHHH
Confidence 99999999999999988775 45677888899999999999 999999987653 3215677
Q ss_pred hHHHHHHhhhhH
Q 041894 195 SSGLAGCNKFEK 206 (219)
Q Consensus 195 n~ll~~~~~~~~ 206 (219)
..+...|.+.|+
T Consensus 148 ~~la~~~~~~~~ 159 (186)
T 3as5_A 148 RAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 778888877774
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-07 Score=74.58 Aligned_cols=161 Identities=5% Similarity=-0.038 Sum_probs=128.5
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc-HH-HHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-RF-LISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~ 79 (219)
...|..+...+.+.|+++.|..+|++..+. .|+ .. +|..+...+.+.|++++|..+|+.... |.+...|.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 176 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 457888888889999999999999999974 453 33 899999999999999999999998653 314444544433
Q ss_pred HHH-hcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC-CCc--cHHHHHHHHHHHHhc
Q 041894 80 CCT-QNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDL--DLYTNNALMNMYAQS 154 (219)
Q Consensus 80 ~~~-~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~--~~~~~~~ll~~y~~~ 154 (219)
... ..|++++|..+|+...+. .| +...|..+...+.+.|+.+.|+.+++...+.. +.| ....|..++..+.+.
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 322 369999999999997754 34 45688888899999999999999999988863 455 467899999999999
Q ss_pred CCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 155 QNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 155 g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
|+. +.|..++++..
T Consensus 255 g~~------------------~~a~~~~~~a~ 268 (308)
T 2ond_A 255 GDL------------------ASILKVEKRRF 268 (308)
T ss_dssp SCH------------------HHHHHHHHHHH
T ss_pred CCH------------------HHHHHHHHHHH
Confidence 999 88888888765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=8e-07 Score=70.15 Aligned_cols=177 Identities=12% Similarity=0.001 Sum_probs=131.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~ 79 (219)
..++..+=..+.+.|+++.|...|.+..+.+ +...+..+-..|.+ .+++++|...|+.....++..++..+-.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 82 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556666667778889999999999888733 45667777778888 8999999999987653326788888888
Q ss_pred HHHh----cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 80 CCTQ----NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 80 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
.|.. .+++++|...|+...+.+ +...+..+-..|.. .++++.|...++...+.+ +...+..+-..|
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888 899999999998887765 55677777777777 889999999998887766 455666777777
Q ss_pred Hh----cCCchhH--HHHH------------hhhhccC----CcchhhHHHHhhcCCCCC
Q 041894 152 AQ----SQNMDMH--IYDR------------FQGFGFN----GGREASVHEVLDKIPERN 189 (219)
Q Consensus 152 ~~----~g~~~~~--~~~~------------~~~~~~~----~g~~~~a~~l~~~m~~~~ 189 (219)
.+ .++++.+ .|+. +.....+ .|+.++|.+.|++..+.+
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 77 7888666 2333 1112224 677788888888766544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=74.22 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=105.7
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC-------C--
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKT------LEPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK-------T-- 67 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~------g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-------~-- 67 (219)
..++..+-..+...|+++.|...+.+..+. +-.| ...++..+-..|...|++++|...|.+.. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456778888899999999999999998865 3223 45678889999999999999999988753 1
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 68 -PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 68 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
|....+|..+-..|...|++++|..+|++..+. +-.| ...++..+-..|...|+++.|...++...+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 213567888999999999999999999997654 1133 2457888889999999999999999987654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.4e-08 Score=76.67 Aligned_cols=132 Identities=12% Similarity=0.078 Sum_probs=104.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-------C-
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKT------LE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-------P- 68 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~------g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-------~- 68 (219)
..++..+-..+...|+++.|...+.+..+. +- .....++..+-..|...|++++|...|++... +
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 356777788899999999999999998775 22 23456788899999999999999999987531 1
Q ss_pred --CChhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 69 --APPVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 69 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
....++..+-..+...|++++|..+|++..+. +-.|+ ..++..+-..|...|+++.|...++...+.
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 02466888899999999999999999997653 22332 346788889999999999999999987753
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-07 Score=71.94 Aligned_cols=146 Identities=9% Similarity=0.017 Sum_probs=95.4
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-CCChh----hHHHHHHHHH
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-PAPPV----AWKSIIRCCT 82 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~~----~~~~li~~~~ 82 (219)
...-..+.+.|+++.|...|....+.. +.+...+..+-..|.+.|++++|...|+.... +.+.. +|..+-..+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334455667788888888888877654 22444667777788888888888888776532 10222 3777777788
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH-HHHHhcCCc
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM-NMYAQSQNM 157 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~y~~~g~~ 157 (219)
..|++++|...|+...+.. +-+...|..+-..|...|+++.|...++...+.. +.+...+..+- ..|.. +++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~~~ 158 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-KEY 158 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-TCH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-HHH
Confidence 8888888888887766532 2234577777777788888888888877765553 23445555555 44443 467
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-06 Score=65.16 Aligned_cols=149 Identities=7% Similarity=-0.062 Sum_probs=121.6
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
+..+|..+=..|.+.|++++|...|++.. .|.+..+|..+-..|.+.|++++|...+....... +-+...+..+-..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56788889899999999999999998764 34378899999999999999999999999876542 2234566667778
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeee
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVE 193 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~ 193 (219)
+...++++.+...+....+.. +.+...+..+-.+|.+.|++ ++|.+.|++.. .|++...
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~------------------~~A~~~~~~~l~~~p~~~~~ 143 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEH------------------DKAIEAYEKTISIKPGFIRA 143 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCc------------------hhHHHHHHHHHHhcchhhhH
Confidence 888999999999999987765 34677888899999999999 99999999766 3332667
Q ss_pred hhHHHHHHhhhhH
Q 041894 194 LSSGLAGCNKFEK 206 (219)
Q Consensus 194 ~n~ll~~~~~~~~ 206 (219)
|..+-..|.+.|+
T Consensus 144 ~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 144 YQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 8888888887775
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.2e-07 Score=70.23 Aligned_cols=150 Identities=7% Similarity=-0.076 Sum_probs=118.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
..++..+-..+.+.|+++.|...++...+.+-.|+ ...|..+-..|.+.|++++|...|+... .|.+..+|..+-.
T Consensus 37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 116 (272)
T 3u4t_A 37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116 (272)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 34777788899999999999999999998442222 3348888899999999999999998764 3326789999999
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
.|...|++++|...|++..+. .|+. ..|..+-..+-..++++.|...++...+.. +.+...+..+-.++...|+
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCc
Confidence 999999999999999988765 4544 455555524445569999999999988875 3346777778888888887
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=8.9e-07 Score=74.44 Aligned_cols=152 Identities=5% Similarity=-0.049 Sum_probs=127.8
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC-HHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL-VHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..|+.+-..+.+.|+++.|...+++.++.. +-+...|+.+-..+.+.|+ +++|+..|+... .|.+..+|+.+-..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777888999999999999999875 4467888999999999997 999999999865 343788999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh-cCCchh
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ-SQNMDM 159 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~-~g~~~~ 159 (219)
...|++++|...|+..++. .| +...|..+-.++.+.|++++|...++...+.. ..+...|+.+-.+|.+ .|..+.
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999998864 45 45688888889999999999999999998876 3467888888888998 677644
Q ss_pred H
Q 041894 160 H 160 (219)
Q Consensus 160 ~ 160 (219)
+
T Consensus 254 A 254 (382)
T 2h6f_A 254 A 254 (382)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-06 Score=68.36 Aligned_cols=175 Identities=13% Similarity=-0.004 Sum_probs=134.3
Q ss_pred hHHHHHHhCccc----cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHH
Q 041894 5 KTLINLLKNPVS----IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKS 76 (219)
Q Consensus 5 ~~~~~ll~~~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 76 (219)
.++..+-..+.. .++++.|...|.+..+.+ +...+..+-..|.+ .+++++|...|+.....++..++..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 115 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHH
Confidence 445555556666 899999999999998886 67778888888888 9999999999987654337788888
Q ss_pred HHHHHHh----cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 77 IIRCCTQ----NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 77 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
+-..|.. .+++++|...|+...+.+ +...+..+-..|.. .++.++|...++...+.+ +...+..+-
T Consensus 116 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 189 (273)
T 1ouv_A 116 LGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAG 189 (273)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 8899998 899999999999988765 44566666677776 889999999999887765 356677778
Q ss_pred HHHHh----cCCchhH--HHHH------------hhhhccC----CcchhhHHHHhhcCCCC
Q 041894 149 NMYAQ----SQNMDMH--IYDR------------FQGFGFN----GGREASVHEVLDKIPER 188 (219)
Q Consensus 149 ~~y~~----~g~~~~~--~~~~------------~~~~~~~----~g~~~~a~~l~~~m~~~ 188 (219)
..|.. .++++.+ .|+. +.....+ .|+.++|.+.|++..+.
T Consensus 190 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 190 NMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 88888 8888877 3443 2222234 77888888888876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-07 Score=78.23 Aligned_cols=160 Identities=8% Similarity=-0.020 Sum_probs=136.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc---------CCHHHHHHHHHhcC--CCCChh
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF---------NLVHDSLCLLDTLK--TPAPPV 72 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~---------g~~~~A~~~~~~m~--~~~~~~ 72 (219)
..+|..+-..+.+.|+++.|...|++..+.. |+...+..+-..|... |++++|...|++.. .|.+..
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 5678888889999999999999999998764 7778889999999999 99999999998764 342788
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHhHhCCCCC----CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc
Q 041894 73 AWKSIIRCCTQN--------GLLVESLTCFVRMIGSGVYP----DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140 (219)
Q Consensus 73 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 140 (219)
.|..+-.+|... |++++|...|++..+. .| +...|..+-..|...|++++|...++...+.. +.+
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~ 291 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAW 291 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 999999999998 9999999999998764 45 56788899999999999999999999988875 335
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 141 ~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
...+..+-.++...|++ ++|.+.+.+++
T Consensus 292 ~~a~~~l~~~~~~lg~~------------------~eAi~~~~~~~ 319 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRL------------------TSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHHH------------------HHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHhcccc
Confidence 66788888999999999 77777666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-06 Score=71.63 Aligned_cols=180 Identities=8% Similarity=-0.032 Sum_probs=143.2
Q ss_pred hhHHHHHHhCccccCC-hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKT-KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~-~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
..+|+.+-..+.+.|+ ++.|...|++.++.. +-+...|+.+=..+.+.|++++|+..|+... .|.+..+|..+-.+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~ 209 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence 5677778888889996 999999999999876 4477889999999999999999999998865 34378999999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhc-ccChhhH-----HHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTL-LVDFRFG-----ESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
+.+.|++++|+..|++.++. .| +...|+.+-..+.+ .|..+.| ...+....+.. .-+...|+.+-.+|.+
T Consensus 210 ~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHc
Confidence 99999999999999998874 45 45678888888888 5655777 46677776665 3357788888888988
Q ss_pred cC--CchhHHHHHhhhhccCCcchhhHHHHhhcCC-CCCCeeehhHHHHHHhhhh
Q 041894 154 SQ--NMDMHIYDRFQGFGFNGGREASVHEVLDKIP-ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 154 ~g--~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~-~~~~~~~~n~ll~~~~~~~ 205 (219)
.| ++ ++|.+++.++. .++....+..+...|.+.|
T Consensus 287 ~g~~~~------------------~~a~~~~~~~~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 287 RGLSKY------------------PNLLNQLLDLQPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TCGGGC------------------HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred cCccch------------------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHh
Confidence 88 57 88888888772 1221456777888887764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-06 Score=65.11 Aligned_cols=151 Identities=9% Similarity=-0.043 Sum_probs=122.0
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
|+..|...=..+.+.|+++.|...|++..+..-+++...+..+-.+|.+.|++++|...|+... .|.+..+|..+-..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4566777777888999999999999999988754777888778889999999999999998764 34256789999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCc--------ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc---HHHHHHHHH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDH--------NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD---LYTNNALMN 149 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~ 149 (219)
|...|++++|...|++..+. .|+. ..|..+-..+...|+++.|...++...+.. |+ ...+..+-.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 99999999999999997764 3543 346666677788899999999999987753 44 567777777
Q ss_pred HHHhcCCc
Q 041894 150 MYAQSQNM 157 (219)
Q Consensus 150 ~y~~~g~~ 157 (219)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.1e-06 Score=66.20 Aligned_cols=147 Identities=9% Similarity=-0.051 Sum_probs=114.9
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHH-HHHHHHh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKS-IIRCCTQ 83 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~-li~~~~~ 83 (219)
+..+-..+.+.|+++.|...|.+..+.. +-+...+..+-..|.+.|++++|...++... .| +...... ..-.+..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHHHHHHh
Confidence 3444456678899999999999998775 4467788888899999999999999999886 35 4433222 2234666
Q ss_pred cCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhcCCc
Q 041894 84 NGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y~~~g~~ 157 (219)
.++.++|...|++..+. .| +...+..+-..+...|++++|...+..+.+..... +...+..|...|...|+.
T Consensus 198 ~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred hcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 77888899888887664 35 45678888899999999999999999988876432 367899999999999999
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-06 Score=72.83 Aligned_cols=168 Identities=8% Similarity=-0.024 Sum_probs=124.3
Q ss_pred cCChh-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh-hhHHHHHHHHHhcCC
Q 041894 17 IKTKS-------QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP-VAWKSIIRCCTQNGL 86 (219)
Q Consensus 17 ~~~~~-------~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~-~~~~~li~~~~~~g~ 86 (219)
.|+++ .|..+|++..+.-.+.+...|..+...+.+.|++++|..+|+... .|.+. ..|..+...+.+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 68877 889999988763334468899999999999999999999998764 34133 589999999999999
Q ss_pred hhHHHHHHHHhHhCCCCCC-cccHHHHHHH-HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHH
Q 041894 87 LVESLTCFVRMIGSGVYPD-HNVFPSVLKS-CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~ 164 (219)
+++|..+|+.-.+. .|+ ...|...... +...|+.+.|..+++...+.. +.+...|..++..+.+.|+.
T Consensus 372 ~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~------- 441 (530)
T 2ooe_A 372 IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNED------- 441 (530)
T ss_dssp HHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCH-------
T ss_pred HHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCH-------
Confidence 99999999998764 343 2222221111 235799999999999877764 34578899999999999999
Q ss_pred hhhhccCCcchhhHHHHhhcCCCCC--Cee----ehhHHHHHHhhhh
Q 041894 165 FQGFGFNGGREASVHEVLDKIPERN--GNV----ELSSGLAGCNKFE 205 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~~~--~~~----~~n~ll~~~~~~~ 205 (219)
++|+.+|++....+ .+. .|...+.-..+.|
T Consensus 442 -----------~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 442 -----------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp -----------HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred -----------hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999998765321 022 4655555555445
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3e-06 Score=74.28 Aligned_cols=148 Identities=8% Similarity=-0.054 Sum_probs=103.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.|++++|...+++..+.. +.+...|..+-..|.+.|++++|...|++.. .|.+..+|..+-..|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888988888887653 3356788888889999999999999998754 3326778888999999999999999999
Q ss_pred HHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc---CCchhHHHHHhhhhcc
Q 041894 95 VRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS---QNMDMHIYDRFQGFGF 170 (219)
Q Consensus 95 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~---g~~~~~~~~~~~~~~~ 170 (219)
++..+. .|+ ...+..+-..+.+.|++++|.+.++...+.. ..+...+..+..+|... |+.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~------------- 144 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRAL------------- 144 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTH-------------
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccH-------------
Confidence 987764 344 5678888888999999999999999987775 34567888888889888 777
Q ss_pred CCcchhhHHHHhhcCC
Q 041894 171 NGGREASVHEVLDKIP 186 (219)
Q Consensus 171 ~~g~~~~a~~l~~~m~ 186 (219)
++|.+.+++..
T Consensus 145 -----~~A~~~~~~al 155 (568)
T 2vsy_A 145 -----DVLSAQVRAAV 155 (568)
T ss_dssp -----HHHHHHHHHHH
T ss_pred -----HHHHHHHHHHH
Confidence 77777776654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6.2e-07 Score=70.04 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=110.3
Q ss_pred cccCChhHHHHHHHHHHHc-------CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----------CCCChhhHHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKT-------LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----------TPAPPVAWKSI 77 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~-------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----------~~~~~~~~~~l 77 (219)
...|+++.|..+|++..+. ..+....++..+-..|...|++++|...+++.. .|....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877653 112345678889999999999999999988753 11034678899
Q ss_pred HHHHHhcCChhHHHHHHHHhHhC------CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh------CCCc-cHHH
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGS------GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL------GVDL-DLYT 143 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~ 143 (219)
-..|...|++++|...|.+..+. .-.| ...++..+-..|...|+++.|...++...+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999997643 1123 3467888889999999999999999997765 2123 4678
Q ss_pred HHHHHHHHHhcCCc
Q 041894 144 NNALMNMYAQSQNM 157 (219)
Q Consensus 144 ~~~ll~~y~~~g~~ 157 (219)
+..+-.+|.+.|++
T Consensus 172 ~~~la~~~~~~g~~ 185 (283)
T 3edt_B 172 KNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCCH
Confidence 88899999999999
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.1e-06 Score=61.92 Aligned_cols=155 Identities=9% Similarity=0.001 Sum_probs=116.0
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH-HHhc
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC-CTQN 84 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~-~~~~ 84 (219)
...-..+.+.|+++.|...|++..+.. +.+...+..+-..|.+.|++++|...|+... .| +...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 344456778899999999999887654 4467788889999999999999999999876 34 44333322111 1222
Q ss_pred CChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhcCCchhHHH
Q 041894 85 GLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
+...+|...|++..+. .|+ ...+..+-..+...|++++|...+....+....+ +...+..+..+|...|+.
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~----- 160 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG----- 160 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS-----
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC-----
Confidence 3344578888887653 464 5678888889999999999999999988876543 466889999999999999
Q ss_pred HHhhhhccCCcchhhHHHHhhc
Q 041894 163 DRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 163 ~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
++|...|++
T Consensus 161 -------------~~A~~~y~~ 169 (176)
T 2r5s_A 161 -------------NAIASKYRR 169 (176)
T ss_dssp -------------CHHHHHHHH
T ss_pred -------------CcHHHHHHH
Confidence 777777764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-05 Score=54.93 Aligned_cols=111 Identities=10% Similarity=0.032 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
...+..+-..+.+.|++++|...|.+.. .|.+..+|..+...+...|++++|..+|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4556666667777777777777776653 22155667777777777777777777777766532 22445666677777
Q ss_pred hcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
...|+++.|...++...+... .+...+..+-.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 777777777777777666542 2333444443333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-05 Score=60.47 Aligned_cols=114 Identities=11% Similarity=-0.060 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 121 (219)
+..+-..+.+.|++++|...|.+...+ +..+|..+-..|...|++++|...|++..+.. +.+...|..+-..+...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344555677788888888888887777 78888888888888888888888888866542 2244567777788888888
Q ss_pred hhhHHHHHHHHHHhCCC--------------c-cHHHHHHHHHHHHhcCCc
Q 041894 122 FRFGESVHACIIRLGVD--------------L-DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 122 ~~~a~~~~~~m~~~g~~--------------~-~~~~~~~ll~~y~~~g~~ 157 (219)
++.|...++...+.... | ....+..+-.+|.+.|++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 88888888887764321 1 236788888999999999
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3e-05 Score=59.59 Aligned_cols=162 Identities=14% Similarity=0.047 Sum_probs=118.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCC-CC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChh---hHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPV---AWKSI 77 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~---~~~~l 77 (219)
..+-..-..+.+.|+++.|...|+.+.+..- .| ....+..+-.+|.+.|++++|...|+.+. .|.+.. ++-.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444555667889999999999999987642 22 23567778889999999999999999864 341222 33333
Q ss_pred HHHHHh------------------cCChhHHHHHHHHhHhCCCCCCcc-cH-----------------HHHHHHHhcccC
Q 041894 78 IRCCTQ------------------NGLLVESLTCFVRMIGSGVYPDHN-VF-----------------PSVLKSCTLLVD 121 (219)
Q Consensus 78 i~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~~-t~-----------------~~ll~~~~~~g~ 121 (219)
-.++.. .|++++|...|++..+. -|+.. .+ -.+-..+.+.|+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 333332 57899999999998865 36543 22 133456778899
Q ss_pred hhhHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 122 FRFGESVHACIIRLGVDLD--LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 122 ~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++.|...++.+.+.-.... ...+..+..+|.+.|+. ++|.+.++.+.
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~------------------~~A~~~~~~l~ 211 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN------------------AQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc------------------HHHHHHHHHHH
Confidence 9999999999887753321 35688889999999999 99999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=62.94 Aligned_cols=173 Identities=10% Similarity=-0.006 Sum_probs=123.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCC---ChhhHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS---RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPA---PPVAWK 75 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~---~~~~~~ 75 (219)
...+-..-..+.+.|+++.|...|..+.+.. +.+ ...+..+-.+|.+.|++++|...|+... .|. ...++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444455556778999999999999998764 223 5677888889999999999999998864 231 134566
Q ss_pred HHHHHHHh--------cCChhHHHHHHHHhHhCCCCCCc-ccH-----------------HHHHHHHhcccChhhHHHHH
Q 041894 76 SIIRCCTQ--------NGLLVESLTCFVRMIGSGVYPDH-NVF-----------------PSVLKSCTLLVDFRFGESVH 129 (219)
Q Consensus 76 ~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~-~t~-----------------~~ll~~~~~~g~~~~a~~~~ 129 (219)
.+-.++.. .|++++|...|++..+. .|+. ... -.+-..|.+.|+++.|...+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77788888 99999999999998764 3543 333 34467788899999999999
Q ss_pred HHHHHhCCCc--cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 130 ACIIRLGVDL--DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 130 ~~m~~~g~~~--~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
+...+..... ....+..+-.+|.+.|+.+. ...+.|+.++|.+.|++..+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~--------~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSV--------RARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC--------GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccch--------hhcccchHHHHHHHHHHHHH
Confidence 9988775332 34567777788887622200 00011222999999988763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-06 Score=62.36 Aligned_cols=155 Identities=10% Similarity=-0.016 Sum_probs=109.8
Q ss_pred hCccccCChhHHHHHHHHHHHcCCCCcHHHHHH----------------HHHHHhhcCCHHHHHHHHHhcC--CCCChhh
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISR----------------LLFIYNNFNLVHDSLCLLDTLK--TPAPPVA 73 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~----------------ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~ 73 (219)
..+.+.|+++.|...|.+..+.. +-+...|.. +-..|.+.|++++|...|+... .|.+..+
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 90 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 35568899999999999998764 223445555 7788999999999999998764 3437889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChh--hHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFR--FGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
|..+-..+...|++++|...|++..+. .|+ ...|..+-..|...|..+ .+...+.... ...|....+..+-.+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHHHHHHHHH
Confidence 999999999999999999999998764 465 456666666666555433 3333344332 223333333334455
Q ss_pred HHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 151 YAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 151 y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
+...|++ ++|.+.|++..+.+
T Consensus 167 ~~~~~~~------------------~~A~~~~~~al~l~ 187 (208)
T 3urz_A 167 KLFTTRY------------------EKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHTH------------------HHHHHHHHHHTTTS
T ss_pred HHHccCH------------------HHHHHHHHHHHHhC
Confidence 6667888 99999999877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=6.1e-06 Score=74.85 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=121.3
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~ 114 (219)
+...|+.|=..|.+.|++++|+..|++.. .|.+..+|+.+=..|.+.|++++|...|++..+. .|+ ...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45688999999999999999999998754 4436889999999999999999999999997763 565 468888999
Q ss_pred HHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCee
Q 041894 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNV 192 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~ 192 (219)
.+.+.|++++|.+.++...+.. .-+...|+.|-.+|.+.|++ ++|.+.|++.. .++...
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~------------------~eAi~~~~~Al~l~P~~~~ 146 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNI------------------PEAIASYRTALKLKPDFPD 146 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHHhCCCChH
Confidence 9999999999999999988875 34577899999999999999 88888888655 333255
Q ss_pred ehhHHHHHHhhhh
Q 041894 193 ELSSGLAGCNKFE 205 (219)
Q Consensus 193 ~~n~ll~~~~~~~ 205 (219)
.|..+...|.+.|
T Consensus 147 a~~~L~~~l~~~g 159 (723)
T 4gyw_A 147 AYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHhhhhhHHHhcc
Confidence 6776777766665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.37 E-value=5.8e-06 Score=67.37 Aligned_cols=152 Identities=7% Similarity=-0.030 Sum_probs=95.7
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC-CC-----hhhHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-AP-----PVAWK 75 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~-----~~~~~ 75 (219)
+..++..+-.++...|+++.|.+++.+.+..+- .-+...+..++..+.+.|+++.|.+.++.|..- +| -.+..
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence 344445566677778888888888877765553 235667777888888888888888888777622 02 23344
Q ss_pred HHHHH--HHh--cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC---------CCccHH
Q 041894 76 SIIRC--CTQ--NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG---------VDLDLY 142 (219)
Q Consensus 76 ~li~~--~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g---------~~~~~~ 142 (219)
-|..+ ... .+++++|+.+|+++.+. .|+..+-..+++++.+.|++++|+..++.+.+.- -+.|..
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 44444 222 23788888888887654 3554455566667778888888888887665431 023455
Q ss_pred HHHHHHHHHHhcCC
Q 041894 143 TNNALMNMYAQSQN 156 (219)
Q Consensus 143 ~~~~ll~~y~~~g~ 156 (219)
+...+|..+.-.|+
T Consensus 257 ~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 257 FLANQITLALMQGL 270 (310)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCh
Confidence 55444444444454
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.5e-05 Score=58.84 Aligned_cols=129 Identities=9% Similarity=-0.087 Sum_probs=104.8
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
+..+-..+.+.|+++.|...|.+. +.|+...|..+-..|.+.|++++|...|+... .|.+..+|..+-..|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 344455677889999999999876 46788999999999999999999999998764 332678899999999999
Q ss_pred CChhHHHHHHHHhHhCC--------------CCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc
Q 041894 85 GLLVESLTCFVRMIGSG--------------VYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g--------------~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 139 (219)
|++++|...|+...+.. ..|+ ...+..+-.++...|+++.|...++...+.....
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999987642 1111 1567788888999999999999999988765433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=5.1e-06 Score=66.69 Aligned_cols=164 Identities=5% Similarity=-0.116 Sum_probs=124.5
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC----hh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT----LEPNS-RFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP----PV 72 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~----~~ 72 (219)
.|......+...|+++.|...|.+..+. |-.++ ..+|+.+-..|.+.|++++|...++... ..++ ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666777788899999999999888664 32222 4688899999999999999999887653 1112 35
Q ss_pred hHHHHHHHHHhc-CChhHHHHHHHHhHhC----CCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccH-----
Q 041894 73 AWKSIIRCCTQN-GLLVESLTCFVRMIGS----GVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL----- 141 (219)
Q Consensus 73 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----- 141 (219)
+|+.+-..|... |++++|...|++-.+- +-.+. ..++..+-..+.+.|++++|...++...+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788888999996 9999999999986542 11111 246778888999999999999999998876544322
Q ss_pred -HHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 142 -YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 142 -~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
..|..+..+|...|++ ++|.+.|++..+
T Consensus 199 ~~~~~~lg~~~~~~g~~------------------~~A~~~~~~al~ 227 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDA------------------VAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCH------------------HHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHh
Confidence 1567778889999999 888888887664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-05 Score=71.25 Aligned_cols=166 Identities=10% Similarity=-0.053 Sum_probs=133.6
Q ss_pred cccCChhHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 15 VSIKTKSQAKQLHAQIF--------KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
...|++++|...+++.. +. -+.+...+..+-..|.+.|++++|...|++.. .|.+..+|..+=.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999988 22 24456778888889999999999999998865 342778899999999999
Q ss_pred CChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHH
Q 041894 85 GLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYD 163 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~ 163 (219)
|++++|...|++..+. .| +...|..+-.++.+.|++++ ...++...+.. ..+...|..+-.+|.+.|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~------ 550 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR------ 550 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH------
Confidence 9999999999997764 45 45678888889999999999 99999988876 34567888999999999999
Q ss_pred HhhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHhh
Q 041894 164 RFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCNK 203 (219)
Q Consensus 164 ~~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~~ 203 (219)
++|.+.|++..+.+ ....|..+-.+|..
T Consensus 551 ------------~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 551 ------------VGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp ------------HHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred ------------HHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 99999999987543 13445555555544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=70.00 Aligned_cols=150 Identities=3% Similarity=-0.034 Sum_probs=116.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhcCC-CC-ChhhHHHHH-
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--RFLISRLLFIYNNFNLVHDSLCLLDTLKT-PA-PPVAWKSII- 78 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~-~~~~~~~li- 78 (219)
...|..+...+.+.|+++.|..+|+.+.+. .|+ ...|..+...+.+.|++++|+.+|+.... ++ +...|....
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 567777888888899999999999999985 443 35899999999999999999999987642 20 222222221
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC-CCcc--HHHHHHHHHHHHhc
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLD--LYTNNALMNMYAQS 154 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~ll~~y~~~ 154 (219)
-.+...|++++|..+|+...+. .| +...|..++....+.|+.+.|+.+++...... ..|+ ...|...+....+.
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 1234689999999999987654 35 45788899999999999999999999987764 2333 55888888888888
Q ss_pred CCc
Q 041894 155 QNM 157 (219)
Q Consensus 155 g~~ 157 (219)
|+.
T Consensus 477 G~~ 479 (530)
T 2ooe_A 477 GDL 479 (530)
T ss_dssp SCH
T ss_pred CCH
Confidence 998
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-05 Score=54.85 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=83.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+...+.+.|+++.|..++.++.+.. +.+..++..+...+.+.|++++|...|+.+. .|.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4677888888999999999999999998775 4467788999999999999999999998764 332778899999999
Q ss_pred HhcCChhHHHHHHHHhHhC
Q 041894 82 TQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~ 100 (219)
...|++++|...|++..+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.2e-05 Score=58.42 Aligned_cols=149 Identities=9% Similarity=-0.143 Sum_probs=115.5
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---C-CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLK---T-PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPS 111 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ 111 (219)
.|+..+..+=..+.+.|++++|...|+... . + +...+..+-.++...|++++|...|+...+. .|+ ...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHH
Confidence 355677777888999999999999998754 3 5 7788878999999999999999999998764 454 467888
Q ss_pred HHHHHhcccChhhHHHHHHHHHHhCCCccH-------HHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDL-------YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
+-..+...|+++.|...++...+... .+. ..|..+=..+.+.|++ ++|.+.|++
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~------------------~~A~~~~~~ 142 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNI------------------EKAEENYKH 142 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCH------------------HHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccH------------------HHHHHHHHH
Confidence 88999999999999999999887653 233 3455556666777777 999999998
Q ss_pred CCCCC----CeeehhHHHHHHhhhhHh
Q 041894 185 IPERN----GNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 185 m~~~~----~~~~~n~ll~~~~~~~~~ 207 (219)
..+.+ ....|..+-..|...|+.
T Consensus 143 al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 143 ATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 77544 134566666666666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-05 Score=62.79 Aligned_cols=166 Identities=10% Similarity=-0.007 Sum_probs=119.8
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhhc-CCHHHHHHHHHhcCC--C--CC---
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-NS----RFLISRLLFIYNNF-NLVHDSLCLLDTLKT--P--AP--- 70 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-~~----~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~--~--~~--- 70 (219)
..+|+.+-..+.+.|+++.|...+++..+.... .+ ..+++.+-..|.+. |++++|...|++... | ++
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 357888888999999999999999988764311 11 35788888899996 999999999987531 1 02
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc------cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccH--
Q 041894 71 -PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN------VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL-- 141 (219)
Q Consensus 71 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-- 141 (219)
..+|+.+-..+.+.|++++|...|++..+..-..... .|..+..++...|+.+.|...++...+. .|+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCC
Confidence 3568889999999999999999999987653222221 4566677788899999999999886543 3332
Q ss_pred ----HHHHHHHHHHH--hcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 142 ----YTNNALMNMYA--QSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 142 ----~~~~~ll~~y~--~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
..+..|+.+|. ..+++ ++|.+.|+++...+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~------------------~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQL------------------SEHCKEFDNFMRLD 270 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTH------------------HHHHHHHTTSSCCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHhccCCccH
Confidence 23444556554 33445 99999999887666
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-05 Score=65.53 Aligned_cols=142 Identities=13% Similarity=0.010 Sum_probs=108.3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP----APPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
+...|+++.+.+ .++..++..+-..+...|++++|++++.+-..+ .+...+..+++.+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566665555 556666667778999999999999999876221 256788899999999999999999999997
Q ss_pred hCCCCC-----CcccHHHHHHHHhc--cc--ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhc
Q 041894 99 GSGVYP-----DHNVFPSVLKSCTL--LV--DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFG 169 (219)
Q Consensus 99 ~~g~~p-----~~~t~~~ll~~~~~--~g--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~ 169 (219)
+. .| +..+..-+..++.. .| +...|..+|+++.... |+..+-..|+.++.+.|++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~------------ 227 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNI------------ 227 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCH------------
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCH------------
Confidence 64 57 35666667767433 34 8999999999986654 5544555666689999999
Q ss_pred cCCcchhhHHHHhhcCCC
Q 041894 170 FNGGREASVHEVLDKIPE 187 (219)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~ 187 (219)
++|++.++.+.+
T Consensus 228 ------~eAe~~L~~l~~ 239 (310)
T 3mv2_B 228 ------AEAQGIVELLLS 239 (310)
T ss_dssp ------HHHHHHHHHHHS
T ss_pred ------HHHHHHHHHHHH
Confidence 999999986543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-05 Score=58.39 Aligned_cols=139 Identities=6% Similarity=-0.123 Sum_probs=102.9
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
+.+.|++++|...+....... +-+...+-.+=..|.+.|++++|.+.|+... .|.+..+|..+-..|.+.|++++|.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 445677888888777765432 1133455667778999999999999998764 3437889999999999999999999
Q ss_pred HHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHH-HHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 92 TCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESV-HACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 92 ~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
..|+...+. .|+ ...|..+-..|.+.|+.+++... ++...+.. +-+..+|...-..+.+.|+
T Consensus 86 ~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999998763 565 46788888889999998876655 57766654 2356667766666666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.8e-05 Score=51.88 Aligned_cols=117 Identities=9% Similarity=-0.064 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 114 (219)
+...+..+-..+...|++++|...|+... .|.+...|..+-..+...|++++|...|....+. .| +...+..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 44566777778888888888888887653 2326677888888888888888888888887654 34 3556777777
Q ss_pred HHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.+...|+++.|...++...+.. +.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888877765 23566777777777777765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=3.6e-05 Score=73.57 Aligned_cols=161 Identities=7% Similarity=0.083 Sum_probs=88.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~ 83 (219)
...|..+..+|.+.|++++|.+.+...++.. ++....+-+..+|++.+++++...+. ..+ +...|..+=..|..
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~-n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGP-NNAHIQQVGDRCYD 1207 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCC-CHHHHHHHHHHHHh
Confidence 4455666666667777777776666655543 23333334666666666666444332 244 44555556666666
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH--
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI-- 161 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~-- 161 (219)
.|++++|..+|... ..|..+..++.+.|+++.|.+.+..- .+..+|.-+-.++...|+++.|+
T Consensus 1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 66666666666552 36666666666666666666665543 22344444444444444444331
Q ss_pred ----------HHHhhhhccCCcchhhHHHHhhcC
Q 041894 162 ----------YDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 162 ----------~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
++.+..|+.+.|.+++|.++++.-
T Consensus 1273 gl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1273 GLHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122333445566666666666544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.20 E-value=4.1e-05 Score=54.90 Aligned_cols=125 Identities=9% Similarity=-0.027 Sum_probs=79.1
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..|..+-..+...|+++.|...|....+.. +.+..++..+-..+.+.|++++|...|.... .|.+..+|..+-..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345555556667777777777777776654 3356667777777777777777777776543 2315666777777777
Q ss_pred hcCChhHHHHHHHHhHhCCCCCC-cccH--HHHHHHHhcccChhhHHHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPD-HNVF--PSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~--~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
..|++++|...|++..+. .|+ ...+ -.....+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777776543 232 2233 22333355667777777666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-05 Score=54.39 Aligned_cols=117 Identities=9% Similarity=-0.026 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
...+..+-..+...|++++|...|.... .|.+..+|..+-..+...|++++|...|.+..+.. +.+...|..+-..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3456777778899999999999998754 33277889999999999999999999999977642 23456788888899
Q ss_pred hcccChhhHHHHHHHHHHhCCCccHHHH--HHHHHHHHhcCCc
Q 041894 117 TLLVDFRFGESVHACIIRLGVDLDLYTN--NALMNMYAQSQNM 157 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~ll~~y~~~g~~ 157 (219)
...|+++.|...++...+.... +...+ -.+...+.+.|++
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877532 33344 4444557778888
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-05 Score=53.39 Aligned_cols=116 Identities=9% Similarity=0.065 Sum_probs=92.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...+..+-..+...|+++.|...+.+..+.. +.+...+..+-..|...|++++|...+.... .|.+...|..+-..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567777788889999999999999998765 4467888899999999999999999998754 332678899999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccCh
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDF 122 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 122 (219)
...|++++|...|++..+. .| +...+..+...+.+.|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999997764 34 345565666666655543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.8e-05 Score=52.82 Aligned_cols=118 Identities=8% Similarity=-0.047 Sum_probs=80.2
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 113 (219)
+.+...+..+-..+.+.|++++|...|++.. .|.+..+|..+-..+...|++++|...|++..+.. +.+...+..+-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 3455567777777888888888888887643 22256777777788888888888888888766532 22345677777
Q ss_pred HHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 041894 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g 155 (219)
..+.+.|+++.|...++...+.. +.+...+..+-.++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77788888888888888776654 223455555555655544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00016 Score=57.70 Aligned_cols=152 Identities=10% Similarity=-0.103 Sum_probs=109.2
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCc-H----HHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC----h
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-R----FLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP----P 71 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~-~----~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~----~ 71 (219)
.+...+..+...|+++.|...+....+..-... . ..+..+-..+...|++++|...+.+.- .. + .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-DVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS-CTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-chHHHH
Confidence 344566778889999999999988776542211 1 223345556778889999999987642 11 2 3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCC-----cccHHHHHHHHhcccChhhHHHHHHHHHHhC----CCc-c
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPD-----HNVFPSVLKSCTLLVDFRFGESVHACIIRLG----VDL-D 140 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~~-~ 140 (219)
.+|+.+-..|...|++++|...|++..+. ...|+ ..+|..+-..|...|++++|...++...+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888999999999999999999987621 11222 1578888889999999999999988865432 111 2
Q ss_pred HHHHHHHHHHHHhcCCch
Q 041894 141 LYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 141 ~~~~~~ll~~y~~~g~~~ 158 (219)
..+|..+-.+|.+.|+.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~ 253 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcH
Confidence 667888889999999993
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.07 E-value=6.1e-05 Score=60.16 Aligned_cols=149 Identities=9% Similarity=-0.163 Sum_probs=108.5
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcC-CCCcHH----HHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCCh----hh
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRF----LISRLLFIYNNFNLVHDSLCLLDTLK-----TPAPP----VA 73 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~----~~ 73 (219)
...+..+...|+++.|..+++...+.. ..|+.. .+..+-..|...+++++|...|.+.- .+ +. .+
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-~~~~~~~~ 157 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-DVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS-CTTHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc-cHHHHHHH
Confidence 334667788999999999999988743 233322 33456667778889999999988753 22 32 36
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHh----C-CCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCc-cHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIG----S-GVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDL-DLY 142 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~ 142 (219)
|+.+-..|...|++++|..+|++..+ . +..|. ..+|..+-..|.+.|++++|...++...+. +..+ -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 89999999999999999999999773 1 22222 237788888999999999999998875533 2222 256
Q ss_pred HHHHHHHHHHhcCC-c
Q 041894 143 TNNALMNMYAQSQN-M 157 (219)
Q Consensus 143 ~~~~ll~~y~~~g~-~ 157 (219)
.|..+=.+|.+.|+ +
T Consensus 238 ~~~~lg~~~~~~g~~~ 253 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCCcH
Confidence 78888888889994 5
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.1e-05 Score=55.62 Aligned_cols=121 Identities=8% Similarity=-0.005 Sum_probs=95.6
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH-HHhcCCh--
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC-CTQNGLL-- 87 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~-~~~~g~~-- 87 (219)
.+...|+++.|...+....+.. +.+...|..+-..|...|++++|...|+... .|.+...|..+-.. +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567789999999999888765 4567888999999999999999999998764 23267788888888 7788998
Q ss_pred hHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 88 VESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
++|...|++..+. .|+ ...+..+-..+...|+++.|...+....+..
T Consensus 98 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998764 354 4577778888999999999999999987765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-05 Score=58.57 Aligned_cols=142 Identities=11% Similarity=0.053 Sum_probs=100.2
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC----CC----ChhhHHHHHHHHHhcCC
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT----PA----PPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~----~~~~~~~li~~~~~~g~ 86 (219)
...|+++.|.++++.+.. .......++..+-..|...|++++|...+++... .+ ...+++.+-..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999996655533 2224567888888899999999999999887531 10 24678888889999999
Q ss_pred hhHHHHHHHHhHhC-CCCC-C----cccHHHHHHHHhcccChhhHHHHHHHHHHhC---CCcc--HHHHHHHHHHHHhcC
Q 041894 87 LVESLTCFVRMIGS-GVYP-D----HNVFPSVLKSCTLLVDFRFGESVHACIIRLG---VDLD--LYTNNALMNMYAQSQ 155 (219)
Q Consensus 87 ~~~a~~~~~~m~~~-g~~p-~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~--~~~~~~ll~~y~~~g 155 (219)
+++|...|.+..+. .-.+ + ...+..+-..+...|+++.|...++...+.. -.+. ..++..+-..|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999986532 1112 2 2456777788889999999999988865331 1222 344677788899999
Q ss_pred Cc
Q 041894 156 NM 157 (219)
Q Consensus 156 ~~ 157 (219)
++
T Consensus 162 ~~ 163 (203)
T 3gw4_A 162 NL 163 (203)
T ss_dssp CH
T ss_pred CH
Confidence 99
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=9.2e-05 Score=59.23 Aligned_cols=150 Identities=9% Similarity=-0.146 Sum_probs=115.5
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 113 (219)
+.+...+..+-..+.+.|++++|...|++.- .|.+..++..+-..+...|++++|...|+..... .|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 5556667777788899999999999999864 4437788999999999999999999999987654 46543222222
Q ss_pred -HHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCC
Q 041894 114 -KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNG 190 (219)
Q Consensus 114 -~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~ 190 (219)
..+...+..+.|...++...... +.+...+..|-.+|...|++ ++|.+.|++... |+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~------------------~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRN------------------EEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTG
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccH------------------HHHHHHHHHHHhccccc
Confidence 22556778888888888887775 35677889999999999999 999999998763 331
Q ss_pred --eeehhHHHHHHhhhhH
Q 041894 191 --NVELSSGLAGCNKFEK 206 (219)
Q Consensus 191 --~~~~n~ll~~~~~~~~ 206 (219)
...+..+...|...|+
T Consensus 253 ~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGT 270 (287)
T ss_dssp GGGHHHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHcCC
Confidence 3467888888877774
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=5e-05 Score=52.23 Aligned_cols=112 Identities=9% Similarity=-0.020 Sum_probs=88.5
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+...|..+-..+.+.|+++.|...|++..+.. +.+...+..+-..|...|++++|...|+... .|.+..+|..+-..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677788888999999999999999998764 3467888999999999999999999998764 33267889999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHh
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCT 117 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~ 117 (219)
+.+.|++++|.+.|++..+. .|+ ...+..+-..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence 99999999999999997653 343 234444444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=8.7e-05 Score=64.91 Aligned_cols=131 Identities=11% Similarity=0.071 Sum_probs=111.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...|..+-..+.+.|++++|...+++..+.. +.+...+..+-..|.+.|++++|...|++.. .|.+...|..+-..|
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5677777888899999999999999998765 4467788999999999999999999998764 342678999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcc---cChhhHHHHHHHHHHhCC
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLL---VDFRFGESVHACIIRLGV 137 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~ 137 (219)
.+.|++++|.+.|++..+. .| +...+..+...+... |+.++|.+.++...+.+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9999999999999997764 34 456788888889899 999999999999887763
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-05 Score=57.71 Aligned_cols=107 Identities=4% Similarity=-0.124 Sum_probs=87.6
Q ss_pred HHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 124 (219)
.+.+.|++++|...+...... .+...+-.+-..|.+.|++++|.+.|++..+. .|+ ...|..+-..|.+.|+++.
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 345678899999999876532 13466777889999999999999999998764 464 5688889999999999999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|...++...+.. +-+...|..+-..|.+.|+.
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCh
Confidence 999999988875 23577888999999999999
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00012 Score=48.91 Aligned_cols=96 Identities=11% Similarity=-0.015 Sum_probs=52.9
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+...+..+-..+...|+++.|...|+...+.. +.+...+..+-..|.+.|++++|...++... .|.+...|..+-..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34455555555556666666666666655543 2244555555555666666666666655432 22144555555556
Q ss_pred HHhcCChhHHHHHHHHhHh
Q 041894 81 CTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~ 99 (219)
+...|++++|.+.|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666655543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.04 E-value=8.5e-05 Score=61.40 Aligned_cols=148 Identities=5% Similarity=-0.104 Sum_probs=112.1
Q ss_pred CccccCChhHHHHHHHHHHHcC--CC--C-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC-----hhhHHHHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTL--EP--N-SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP-----PVAWKSII 78 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g--~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~-----~~~~~~li 78 (219)
.+...|+++.|...|.+..+.- .. + ...++..+-..|...|+++.|...+.+.. ..++ ..+++.+-
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4567899999999999998642 11 1 33578888889999999999998887653 1102 35788888
Q ss_pred HHHHhcCChhHHHHHHHHhHhC----CCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh----CC-CccHHHHHHHH
Q 041894 79 RCCTQNGLLVESLTCFVRMIGS----GVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL----GV-DLDLYTNNALM 148 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll 148 (219)
..|...|++++|...|.+..+. +-.|. ..++..+-..|...|+++.|...+....+. +. .....++..+-
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 9999999999999999986532 11111 247788888999999999999999887652 33 34577888899
Q ss_pred HHHHhcCCchhH
Q 041894 149 NMYAQSQNMDMH 160 (219)
Q Consensus 149 ~~y~~~g~~~~~ 160 (219)
..|.+.|+++.|
T Consensus 272 ~~~~~~g~~~~A 283 (383)
T 3ulq_A 272 QIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHCCCHHHH
Confidence 999999999433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-05 Score=62.06 Aligned_cols=179 Identities=10% Similarity=-0.059 Sum_probs=129.5
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CC---CChhhHH
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNS----RFLISRLLFIYNNFNLVHDSLCLLDTLK-----TP---APPVAWK 75 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~---~~~~~~~ 75 (219)
...=..+.+.|+++.|...|+++.+..-. + ...+..+-..|...|++++|...+++.. .+ ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33344677889999999999999887422 3 3678888889999999999999987653 11 0246788
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCC-CCCC----cccHHHHHHHHhcccC--------------------hhhHHHHHH
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSG-VYPD----HNVFPSVLKSCTLLVD--------------------FRFGESVHA 130 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~~~ 130 (219)
.+-..+...|++++|...|.+..+.. -.++ ..++..+-..+...|+ ++.|...+.
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999999999999865421 0122 3377778888888899 899988887
Q ss_pred HHHHh----CCCc-cHHHHHHHHHHHHhcCCchhHH--HHH--------------------hhhhccCCcchhhHHHHhh
Q 041894 131 CIIRL----GVDL-DLYTNNALMNMYAQSQNMDMHI--YDR--------------------FQGFGFNGGREASVHEVLD 183 (219)
Q Consensus 131 ~m~~~----g~~~-~~~~~~~ll~~y~~~g~~~~~~--~~~--------------------~~~~~~~~g~~~~a~~l~~ 183 (219)
...+. +-.+ ...++..+-..|...|+++.++ |+. +.....+.|+.++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 75432 2122 3457888888999999998772 222 1122346788888988888
Q ss_pred cCCC
Q 041894 184 KIPE 187 (219)
Q Consensus 184 ~m~~ 187 (219)
+..+
T Consensus 248 ~al~ 251 (338)
T 3ro2_A 248 KTLL 251 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8873
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.8e-05 Score=62.90 Aligned_cols=151 Identities=11% Similarity=0.088 Sum_probs=113.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCC-CC-----cHHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC---
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PN-----SRFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP--- 70 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~--- 70 (219)
.+|..+=..+...|+++.|...+.+..+.-- .+ ...+++.+=..|...|++++|...|++.. .+ +
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~ 222 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-QPQL 222 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-ChHH
Confidence 5677777788899999999999998876421 11 23467778889999999999999987653 12 2
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCcc
Q 041894 71 -PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDLD 140 (219)
Q Consensus 71 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~ 140 (219)
..+|+.+-..|...|++++|...|++..+- +-.| ...++..+-..+.+.|+++.|...++...+. +-...
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 247888999999999999999999997651 2223 3457888889999999999999998886543 22222
Q ss_pred HHHHHHHHHHHHhcCC
Q 041894 141 LYTNNALMNMYAQSQN 156 (219)
Q Consensus 141 ~~~~~~ll~~y~~~g~ 156 (219)
...+..+-..|...|+
T Consensus 303 ~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 3345667778888887
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.5e-05 Score=68.60 Aligned_cols=148 Identities=4% Similarity=-0.136 Sum_probs=117.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...+..+-.++.+.|+++.|...|++..+.. +.+...|..+=..|.+.|++++|...|++.. .|.+...|..+-.++
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATA 511 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3566667778889999999999999998875 4467788888889999999999999998864 343678899999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
.+.|++++ .+.|++..+. .|+ ...|..+-.++.+.|++++|.+.++...+.. ..+...+..+-.+|...|+
T Consensus 512 ~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999 9999997764 454 4678888899999999999999999876654 2235667777777766554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=65.79 Aligned_cols=152 Identities=12% Similarity=-0.012 Sum_probs=113.5
Q ss_pred hHHHHHHhCccccCC--------------------hhHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhhcCCHHHHH
Q 041894 5 KTLINLLKNPVSIKT--------------------KSQAKQLHAQIFKT----LEPN-SRFLISRLLFIYNNFNLVHDSL 59 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~--------------------~~~a~~l~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~A~ 59 (219)
.++..+-..+...|+ ++.|...+.+..+. +-.| ...++..+-..|...|++++|.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 366667777788888 99999988877553 1111 2346788888999999999999
Q ss_pred HHHHhcC-----CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCC-cccHHHHHHHHhcccChhhH
Q 041894 60 CLLDTLK-----TPAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPD-HNVFPSVLKSCTLLVDFRFG 125 (219)
Q Consensus 60 ~~~~~m~-----~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a 125 (219)
..+++.. .+ + ..+|..+-..|...|++++|...|++..+. +-.+. ..++..+-..|...|+++.|
T Consensus 208 ~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 208 IAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 9998754 22 2 247888999999999999999999986532 21111 45777888899999999999
Q ss_pred HHHHHHHHHhCC----Cc-cHHHHHHHHHHHHhcCCc
Q 041894 126 ESVHACIIRLGV----DL-DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 126 ~~~~~~m~~~g~----~~-~~~~~~~ll~~y~~~g~~ 157 (219)
...+....+... .+ ...++..+-..|.+.|++
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 999888654321 11 256778888999999999
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-05 Score=65.86 Aligned_cols=198 Identities=9% Similarity=-0.067 Sum_probs=140.9
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHhcC-----C---CCChhhH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR----FLISRLLFIYNNFNLVHDSLCLLDTLK-----T---PAPPVAW 74 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~---~~~~~~~ 74 (219)
+..+-..+...|+++.|...|+++.+..-. +. .++..+-..|...|++++|...|++.. . +....+|
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445678899999999999999887422 33 478888889999999999999987653 1 1034678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccC-----------------hhhHHHHHHHH
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVD-----------------FRFGESVHACI 132 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~~~~~~m 132 (219)
..+-..|...|++++|...|++..+. +-.| ...++..+-..|...|+ ++.|...+...
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999999999999986543 1112 23477778888889999 99999888775
Q ss_pred HHh----CCC-ccHHHHHHHHHHHHhcCCchhHH--HHH--------------------hhhhccCCcchhhHHHHhhcC
Q 041894 133 IRL----GVD-LDLYTNNALMNMYAQSQNMDMHI--YDR--------------------FQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 133 ~~~----g~~-~~~~~~~~ll~~y~~~g~~~~~~--~~~--------------------~~~~~~~~g~~~~a~~l~~~m 185 (219)
.+. +-. .....+..+-..|...|+++.++ |+. +...+.+.|+.++|.+.|++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 221 23457888889999999998772 322 222235789999999999998
Q ss_pred CCCCC--------eeehhHHHHHHhhhh
Q 041894 186 PERNG--------NVELSSGLAGCNKFE 205 (219)
Q Consensus 186 ~~~~~--------~~~~n~ll~~~~~~~ 205 (219)
..... ...|..+-..|.+.|
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLH 317 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 84210 134555555555555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.9e-05 Score=62.69 Aligned_cols=162 Identities=6% Similarity=-0.058 Sum_probs=112.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCC--C-C--cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC----hh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE--P-N--SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP----PV 72 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~--~-~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~----~~ 72 (219)
.|......+...|+++.|...|.+..+... . + -..+|+.+-..|.+.|++++|...|++.. ..++ ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666777888899999888887765431 1 1 13477888888899999988888887532 2112 35
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCcc-HH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDLD-LY 142 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~ 142 (219)
+|+.+-..|.. |++++|...|++-.+- +-.+ -..++..+-..+.+.|+++.|...++...+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 67777788887 9999999999886532 2111 1356777788888999999999998886653 22222 23
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 143 ~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+..+..++...|++ ++|.+.|++..
T Consensus 197 ~~~~~g~~~~~~g~~------------------~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADY------------------VAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCH------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCH------------------HHHHHHHHHHh
Confidence 666677777888999 77777776644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00021 Score=68.42 Aligned_cols=169 Identities=9% Similarity=0.025 Sum_probs=129.7
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
+.+++++|.++.++. -+..+|..+=.++.+.|++++|...|..- . |...|.-++.++.+.|++++|.++|.
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--d-D~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--D-DPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--C-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 568899998888755 35778899999999999999999999654 4 77889999999999999999999997
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH------hhh
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR------FQG 167 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~------~~~ 167 (219)
.-++.. ++....+.+..+|++.++++...... . .++...|..+=..|-..|+++.| .|+. +..
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI-----~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~ 1229 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI-----N--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAS 1229 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-----h--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHH
Confidence 655543 44444556889999998887544442 1 34556677788888899999888 3444 555
Q ss_pred hccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 168 FGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
.+++.|++++|.+.+++- .+ ..+|.-+-.+|...|
T Consensus 1230 tLvkLge~q~AIEaarKA--~n-~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA--NS-TRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh--CC-HHHHHHHHHHHhhhh
Confidence 567889999999999876 44 567777767766555
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-05 Score=64.30 Aligned_cols=163 Identities=12% Similarity=-0.029 Sum_probs=120.8
Q ss_pred hHHHHHHhCccccCC--------------------hhHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhhcCCHHHHH
Q 041894 5 KTLINLLKNPVSIKT--------------------KSQAKQLHAQIFKT----LEPN-SRFLISRLLFIYNNFNLVHDSL 59 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~--------------------~~~a~~l~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~A~ 59 (219)
.++..+-..+...|+ ++.|...+.+..+. +-.+ ...++..+-..|...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 366667777778888 89999888876543 2111 2346788888999999999999
Q ss_pred HHHHhcC-----CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCC-cccHHHHHHHHhcccChhhH
Q 041894 60 CLLDTLK-----TPAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPD-HNVFPSVLKSCTLLVDFRFG 125 (219)
Q Consensus 60 ~~~~~m~-----~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a 125 (219)
..+++.. .+ + ..++..+...+...|++++|...|++..+. +-.+. ..++..+-..+...|+++.|
T Consensus 204 ~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 204 IAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 9998753 11 2 247888999999999999999999986532 11111 45677788889999999999
Q ss_pred HHHHHHHHHh----CCC-ccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 126 ESVHACIIRL----GVD-LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 126 ~~~~~~m~~~----g~~-~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
...++...+. +-. ....++..+-..|.+.|++ ++|.+.|++..
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------~~A~~~~~~a~ 330 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH------------------DQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh------------------HHHHHHHHHHH
Confidence 9998886543 211 1245777888999999999 88888887644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=66.50 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCC----cccHHHHHHHHhcccChhhHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPD----HNVFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
+|..+-..|...|++++|...|++..+..- .++ ...+..+-..|...|++++|...++..
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 444444455555555555555544332100 001 113444444455555555555554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00018 Score=57.31 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=81.9
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+...+..+-..+.+.|+++.|...|.+..+.. +.+...|..+-..|.+.|++++|...++... .|.+...|..+-.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667777778889999999999999998874 3377888999999999999999999998865 34267889999999
Q ss_pred HHhcCChhHHHHHHHHhHh
Q 041894 81 CTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~ 99 (219)
|...|++++|...|....+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.95 E-value=9e-05 Score=53.83 Aligned_cols=119 Identities=8% Similarity=-0.084 Sum_probs=91.9
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
...+.+.+...+.++++.. +.| +...+..+=..+.+.|++++|...|+... .|.+...|..+=.+|..
T Consensus 12 ~~~l~~~~~~~~~l~~al~---------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINA---------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCC---------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3455555555555555432 344 34466777778899999999999998865 44378889999999999
Q ss_pred cCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 84 NGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.|++++|...|+...+- .| +...|..+-.+|.+.|++++|...++...+..
T Consensus 83 ~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp TTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998764 35 45678888899999999999999999988875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.5e-05 Score=62.15 Aligned_cols=182 Identities=10% Similarity=-0.056 Sum_probs=132.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CC---CChh
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS----RFLISRLLFIYNNFNLVHDSLCLLDTLK-----TP---APPV 72 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~---~~~~ 72 (219)
..+...=..+.+.|+++.|...|++..+..- .+ ..++..+-..|...|++++|...|++.. .. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3444555677889999999999999988742 23 3567888889999999999999987642 11 0246
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCC----cccHHHHHHHHhcccC--------------------hhhHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPD----HNVFPSVLKSCTLLVD--------------------FRFGES 127 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~ 127 (219)
+|..+-..|...|++++|...|.+..+.. -.++ ..++..+-..|...|+ ++.|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 78888899999999999999998865421 0112 3477788888889999 999998
Q ss_pred HHHHHHHh----CCCc-cHHHHHHHHHHHHhcCCchhHH--HHH--------------------hhhhccCCcchhhHHH
Q 041894 128 VHACIIRL----GVDL-DLYTNNALMNMYAQSQNMDMHI--YDR--------------------FQGFGFNGGREASVHE 180 (219)
Q Consensus 128 ~~~~m~~~----g~~~-~~~~~~~ll~~y~~~g~~~~~~--~~~--------------------~~~~~~~~g~~~~a~~ 180 (219)
.+....+. +-.+ ...++..+-..|...|+++.++ |+. +.....+.|+.++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88775432 2112 3457888889999999998772 322 1222347888999999
Q ss_pred HhhcCCC
Q 041894 181 VLDKIPE 187 (219)
Q Consensus 181 l~~~m~~ 187 (219)
.+++..+
T Consensus 249 ~~~~al~ 255 (406)
T 3sf4_A 249 YYKKTLL 255 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998873
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00043 Score=52.62 Aligned_cols=160 Identities=10% Similarity=-0.093 Sum_probs=115.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC----CHHHHHHHHHhcCCCCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN----LVHDSLCLLDTLKTPAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~li~ 79 (219)
+.++..+=..+...++++.|...|.+..+.| +...+..|=..|.. + +.++|...|.....+++..++..|=.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445555556667899999999999998876 45666666666777 6 89999999988765547788888888
Q ss_pred HHHh----cCChhHHHHHHHHhHhCCCC-CCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 80 CCTQ----NGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 80 ~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
.|.. .+++++|...|+.-.+.|-. -+...+..|-..|.. .++.+.|...++...+.+ .+...+..|=.+
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMM 171 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 8876 78999999999988776521 014566666666766 778999999999887762 233356666666
Q ss_pred HHhc-C-----CchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 151 YAQS-Q-----NMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 151 y~~~-g-----~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
|... | +. ++|.++|++-.+
T Consensus 172 y~~g~gg~~~~d~------------------~~A~~~~~~A~~ 196 (212)
T 3rjv_A 172 FQQGEKGFIEPNK------------------QKALHWLNVSCL 196 (212)
T ss_dssp HHHCBTTTBCCCH------------------HHHHHHHHHHHH
T ss_pred HHcCCCCCCCCCH------------------HHHHHHHHHHHH
Confidence 6553 2 56 888888776443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00027 Score=58.37 Aligned_cols=145 Identities=10% Similarity=-0.089 Sum_probs=69.6
Q ss_pred cccCChhHHHHHHHHHHHc----C-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC-----hhhHHHHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKT----L-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP-----PVAWKSIIR 79 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~----g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~-----~~~~~~li~ 79 (219)
...|+++.|...|.+..+. + -.....++..+-..|...|+++.|...+.+.. .+ + ..+++.+=.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TCHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHH
Confidence 3455566666555555432 1 11235555555555555665555555544321 11 1 234455555
Q ss_pred HHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCccHHHHHHHHHH
Q 041894 80 CCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDLDLYTNNALMNM 150 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~ 150 (219)
.|...|++++|.+.|.+..+. +-.+ ...++..+-..|...|+++.|...+....+. +-+....++..+-..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 555556666665555553321 1111 1234444555555556666555555554331 112224455555555
Q ss_pred HHhcCCchhH
Q 041894 151 YAQSQNMDMH 160 (219)
Q Consensus 151 y~~~g~~~~~ 160 (219)
|.+.|+++.|
T Consensus 271 ~~~~g~~~~A 280 (378)
T 3q15_A 271 LCKAGQTQKA 280 (378)
T ss_dssp HHHTTCHHHH
T ss_pred HHHCCCHHHH
Confidence 5555655555
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.7e-05 Score=55.37 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=97.1
Q ss_pred hhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH-HhcccCh--hh
Q 041894 50 NNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS-CTLLVDF--RF 124 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~--~~ 124 (219)
...|++++|...+.... .|.+...|..+-..|...|++++|...|++..+.. +.+...+..+-.. +...|++ +.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678888888887643 33277899999999999999999999999977542 2244566666677 6788998 99
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHh
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCN 202 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~ 202 (219)
|...++...+.. +.+...+..+-..|.+.|++ ++|.+.|++..+ ++ ......++....
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~------------------~~A~~~~~~al~~~p~-~~~~~~~~~~i~ 159 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANY------------------AQAIELWQKVMDLNSP-RINRTQLVESIN 159 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHTCCT-TSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccH------------------HHHHHHHHHHHhhCCC-CccHHHHHHHHH
Confidence 999999988875 34567888888999999999 999999987663 33 233344555544
Q ss_pred hhh
Q 041894 203 KFE 205 (219)
Q Consensus 203 ~~~ 205 (219)
+..
T Consensus 160 ~~~ 162 (177)
T 2e2e_A 160 MAK 162 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=9.5e-05 Score=53.17 Aligned_cols=97 Identities=9% Similarity=-0.079 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 114 (219)
+...+..+-..+.+.|++++|...|+... .|.+...|..+-.+|...|++++|...|+...+. .| +...+..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHH
Confidence 44566677778889999999999998764 3327788888888999999999999999987654 34 4567777888
Q ss_pred HHhcccChhhHHHHHHHHHHhC
Q 041894 115 SCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~g 136 (219)
++...|++++|...++...+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8889999999999998876654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00039 Score=46.28 Aligned_cols=98 Identities=7% Similarity=-0.062 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
+...+..+-..+...|++++|...|+... .|.+...|..+-..+...|++++|...+++..+.. +.+...+..+-.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34567778888999999999999998764 33277888999999999999999999999977642 2245678888889
Q ss_pred HhcccChhhHHHHHHHHHHhC
Q 041894 116 CTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g 136 (219)
+...|+++.|...++...+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 999999999999999887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00018 Score=58.92 Aligned_cols=120 Identities=6% Similarity=0.012 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---------------PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
...+..+=..|.+.|++++|...|+... .|.+ ..+|..+-.+|.+.|++++|...|+..++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455555566666666666666665542 2202 3566666666777777777777776655431
Q ss_pred CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 102 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+-+...|..+-.+|...|+++.|...++...+.. +.+...+..+-.++.+.|+.+.+
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 1234456666666666677777777766666554 23455666666666666666644
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=8.9e-05 Score=50.58 Aligned_cols=91 Identities=10% Similarity=0.011 Sum_probs=40.0
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--C---CC----hhhHHHH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--P---AP----PVAWKSI 77 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~---~~----~~~~~~l 77 (219)
|..+-..+...|+++.|...|....+.. +.+...+..+-..|.+.|++++|...+..... | .+ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444555555555555544433 22334444444444455555555544443320 0 01 3334444
Q ss_pred HHHHHhcCChhHHHHHHHHhH
Q 041894 78 IRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~ 98 (219)
-..+...|++++|.+.|+...
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 444444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00015 Score=48.04 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC---CcccHHHHHHHH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP---DHNVFPSVLKSC 116 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~ll~~~ 116 (219)
+..+-..+.+.|++++|...|+... .|.+..+|..+-..+...|++++|...|++..+. .| +...+..+-..+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHHHH
Confidence 3444444555555555555554432 1214455555555555555666666555555443 12 234455555555
Q ss_pred hcc-cChhhHHHHHHHHHHh
Q 041894 117 TLL-VDFRFGESVHACIIRL 135 (219)
Q Consensus 117 ~~~-g~~~~a~~~~~~m~~~ 135 (219)
... |++++|.+.+....+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 555 6666666655555444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00031 Score=48.99 Aligned_cols=93 Identities=6% Similarity=-0.033 Sum_probs=56.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTL 118 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 118 (219)
+...=..|.+.|++++|...|++.. .|.+..+|..+-.+|.+.|++++|...|+...+. .|+ ...|..+-.++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHH
Confidence 3334445666677777777666532 2225666666666777777777777777665542 232 3456666666666
Q ss_pred ccChhhHHHHHHHHHHhC
Q 041894 119 LVDFRFGESVHACIIRLG 136 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~~g 136 (219)
.|++++|...++...+..
T Consensus 94 ~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD 111 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 777777777776665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00026 Score=49.16 Aligned_cols=95 Identities=6% Similarity=-0.140 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 114 (219)
+...+..+-..+.+.|++++|...|.... .|.+...|..+-.++...|++++|...|+...+. .| +...+..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHHH
Confidence 34455555555666666666666665432 2214455566666666666666666666655442 23 2345555555
Q ss_pred HHhcccChhhHHHHHHHHHH
Q 041894 115 SCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~ 134 (219)
++...|+++.|...+....+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55666666666666555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00018 Score=59.02 Aligned_cols=128 Identities=9% Similarity=-0.072 Sum_probs=101.8
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc--------------HHHHHHHHHHHhhcCCHHHHHHHHHhcC--C
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--------------RFLISRLLFIYNNFNLVHDSLCLLDTLK--T 67 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~ 67 (219)
...|..+=..+.+.|+++.|...|.+..+..-... ...|..+-.+|.+.|++++|...++... .
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566677788899999999999999987752221 5788999999999999999999998764 3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHH-HHHHHHH
Q 041894 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGE-SVHACII 133 (219)
Q Consensus 68 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~-~~~~~m~ 133 (219)
|.+..+|..+-.+|...|++++|...|++..+. .|+ ...+..+-..+.+.|+.+.+. .++..|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 327889999999999999999999999997764 454 457777778888888888874 4566654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00012 Score=60.55 Aligned_cols=128 Identities=8% Similarity=-0.065 Sum_probs=53.2
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCC-----CC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC----h
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLE-----PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP----P 71 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-----~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~----~ 71 (219)
+..+=..+...|+++.|...+.+..+..- .+ ...+++.+=..|...|++++|...|.+.. .+ + .
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~ 222 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ-NDRFIA 222 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 33333444445555555555444433210 00 12233444444455555555554444321 01 1 1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.+++.+=..|...|++++|...|.+..+- +-+....++..+-..+.+.|+.+.|...++...+.
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23444444444455555555555443320 11111233444444444555555555555544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00022 Score=51.75 Aligned_cols=86 Identities=10% Similarity=-0.084 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
..+..+=..+.+.|++++|...|+...+. .| +...|..+-.+|...|++++|...++...+... .+...|..+-.+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 34444444445555555555555554432 23 233444444445555555555555555444431 233344444455
Q ss_pred HHhcCCchhH
Q 041894 151 YAQSQNMDMH 160 (219)
Q Consensus 151 y~~~g~~~~~ 160 (219)
|.+.|++++|
T Consensus 114 ~~~lg~~~eA 123 (151)
T 3gyz_A 114 QLRLKAPLKA 123 (151)
T ss_dssp HHHTTCHHHH
T ss_pred HHHcCCHHHH
Confidence 5555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00021 Score=50.57 Aligned_cols=96 Identities=14% Similarity=-0.008 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
..+..+-..+.+.|++++|...|+... .|.+...|..+-.++.+.|++++|...|+...+.. +-+...+..+-.++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344455566777888888888887653 33266777777778888888888888888766532 223456666777777
Q ss_pred cccChhhHHHHHHHHHHhC
Q 041894 118 LLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m~~~g 136 (219)
..|+++.|...++...+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888887766543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0002 Score=51.40 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=80.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..+..+-..+.+.|+++.|...|....+.. +.+...|..+=.+|.+.|++++|...|+... .|.+..+|..+-.+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455566667889999999999999998775 4477888888889999999999999998764 3427788999999999
Q ss_pred hcCChhHHHHHHHHhHh
Q 041894 83 QNGLLVESLTCFVRMIG 99 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~ 99 (219)
..|++++|...|+...+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00015 Score=47.98 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc--cHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL--DLYTNNAL 147 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~l 147 (219)
+...|..+-..+...|++++|...|+...+.. +.+...+..+-..+...|+++.|...++...+.. .. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 56778888899999999999999999977642 2345678888888999999999999999988765 23 57888999
Q ss_pred HHHHHhc-CCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 148 MNMYAQS-QNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 148 l~~y~~~-g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
-.+|.+. |++ ++|.+.|++...
T Consensus 83 ~~~~~~~~~~~------------------~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKE------------------VEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCS------------------HHHHHHHHHHGG
T ss_pred HHHHHHHhCCH------------------HHHHHHHHHHhh
Confidence 9999999 999 999999987664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0013 Score=56.21 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=117.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----NGLLV 88 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~ 88 (219)
.++++.|...|.+..+.| +...+..|=..|.. .++.++|...|.....+++...+..|=..|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 788999999999888775 45566666677777 88999999999876644367777777777877 77899
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh----cCCchhH
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ----SQNMDMH 160 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~----~g~~~~~ 160 (219)
+|...|+.-.+.| +...+..+-..|.. .++.+.|...++...+.| +...+..|-..|.. .++.+.+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 9999998877765 34455556666655 678889999888887765 45667777777776 6777665
Q ss_pred --HHHH------------hhhhcc----CCcchhhHHHHhhcCCCCC
Q 041894 161 --IYDR------------FQGFGF----NGGREASVHEVLDKIPERN 189 (219)
Q Consensus 161 --~~~~------------~~~~~~----~~g~~~~a~~l~~~m~~~~ 189 (219)
+|+. +..... ..++.++|.++|++..+.+
T Consensus 207 ~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 207 AQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3333 111111 2678889999998766554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0013 Score=56.18 Aligned_cols=176 Identities=10% Similarity=-0.083 Sum_probs=123.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----NGLLV 88 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~ 88 (219)
.++++.|...|.+..+.| +...+..|=..|.. .++.++|...|+....+++..++..|-..|.. .++++
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 788999999999888876 45556666667776 78899999999876644367778888788877 77899
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh----cCCchhH
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ----SQNMDMH 160 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~----~g~~~~~ 160 (219)
+|.+.|+...+.| +...+..+-..|.+ .++.+.|...+....+.| +...+..|-..|.. .++++.+
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999998887765 45566666666666 788889998888877765 34456666666665 5666665
Q ss_pred --HHHHh------------hhhccC----CcchhhHHHHhhcCCCCCCeeehhHHHHHH
Q 041894 161 --IYDRF------------QGFGFN----GGREASVHEVLDKIPERNGNVELSSGLAGC 201 (219)
Q Consensus 161 --~~~~~------------~~~~~~----~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~ 201 (219)
+|+.. .....+ .++.++|.++|++..+.+....+..+-..|
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34331 111112 688899999999877654244444333333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00034 Score=51.34 Aligned_cols=143 Identities=10% Similarity=-0.019 Sum_probs=102.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH--h
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--T 117 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~ 117 (219)
+..+-..+.+.|++++|...|+... .|.+...|..+-..+...|++++|...|+...+. .|+.. +..+.... .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHH
Confidence 3445567888999999999999876 3426788999999999999999999999887543 34332 32222211 2
Q ss_pred cccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC----Ceee
Q 041894 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN----GNVE 193 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~----~~~~ 193 (219)
..+....+...++...+.. +.+...+..+-.+|...|++ ++|.+.|++..+.+ +...
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~------------------~~A~~~~~~~l~~~p~~~~~~a 146 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRD------------------EEALELLWNILKVNLGAQDGEV 146 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHTTCTTTTTTHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccH------------------HHHHHHHHHHHHhCcccChHHH
Confidence 2233345677788877765 23578888899999999999 99999999876432 0235
Q ss_pred hhHHHHHHhhhhH
Q 041894 194 LSSGLAGCNKFEK 206 (219)
Q Consensus 194 ~n~ll~~~~~~~~ 206 (219)
+..+...|...|+
T Consensus 147 ~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 147 KKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCC
Confidence 7777777777664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00031 Score=48.31 Aligned_cols=91 Identities=5% Similarity=-0.045 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTL 118 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 118 (219)
+..+=..+.+.|++++|...|.+.. .|.+...|..+-.++.+.|++++|...|+...+. .|+ ...|..+-.++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 3333444455555555555554432 2214455555555555555555555555554432 222 3344445555555
Q ss_pred ccChhhHHHHHHHHHH
Q 041894 119 LVDFRFGESVHACIIR 134 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~ 134 (219)
.|+++.|...++...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00034 Score=48.81 Aligned_cols=99 Identities=12% Similarity=0.006 Sum_probs=81.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
.+...=..+.+.|+++.|...|.+.++.. +.+...|..+-.+|.+.|++++|...|+... .|.+..+|..+-.++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44444557889999999999999998875 4578889999999999999999999998754 33278899999999999
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcc
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHN 107 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~ 107 (219)
.|++++|.+.|+...+ +.|+..
T Consensus 94 ~~~~~~A~~~~~~al~--l~P~~~ 115 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ--VDPSNE 115 (126)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCHHHHHHHHHHHHH--HCcCCH
Confidence 9999999999999776 356643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0003 Score=50.88 Aligned_cols=94 Identities=9% Similarity=-0.057 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHH
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSC 116 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~ 116 (219)
..+..+-..|.+.|++++|...|+... .|.+...|..+-.+|.+.|++++|...|+...+. .|+ ...|..+-.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 344444445555555555555555432 1214455555555555555555555555554432 222 33445555555
Q ss_pred hcccChhhHHHHHHHHHHh
Q 041894 117 TLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~ 135 (219)
...|+++.|...++...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555554443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00052 Score=56.17 Aligned_cols=154 Identities=9% Similarity=-0.039 Sum_probs=104.6
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcC----CC--C-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC---hh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTL----EP--N-SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP---PV 72 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g----~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~---~~ 72 (219)
+..+-..+...|+++.|...+.+..+.. .. | ....+..+-..|...|++++|...+++.. ..++ ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4555567788899999999998876542 22 3 23456667778899999999999987642 1101 24
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc-ccHHH-----HHHHHhcccChhhHHHHHHHHHHhCCCc---cHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH-NVFPS-----VLKSCTLLVDFRFGESVHACIIRLGVDL---DLYT 143 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~-----ll~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~ 143 (219)
+|..+-..+...|++++|...+++.....-.++. ..+.. ....+...|+.+.|...+.........+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5777888889999999999999987643212221 12222 2234678899999999988765433211 1235
Q ss_pred HHHHHHHHHhcCCchhH
Q 041894 144 NNALMNMYAQSQNMDMH 160 (219)
Q Consensus 144 ~~~ll~~y~~~g~~~~~ 160 (219)
+..+...+...|+++.+
T Consensus 256 ~~~la~~~~~~g~~~~A 272 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPA 272 (373)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHH
Confidence 66778889999999544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.001 Score=46.36 Aligned_cols=96 Identities=9% Similarity=-0.108 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFP 110 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~ 110 (219)
+...+..+-..+.+.|++++|...|+... .| + ...|..+-.+|...|++++|...|+...+. .| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence 55667777778888888888888887754 34 4 567777788888888888888888876653 34 345666
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.+-.++...|+++.|...++...+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777888888888888888877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0012 Score=52.54 Aligned_cols=125 Identities=6% Similarity=-0.066 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCCC--CCh------hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCc----ccHH
Q 041894 44 RLLFIYNNFNLVHDSLCLLDTLKTP--APP------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY-PDH----NVFP 110 (219)
Q Consensus 44 ~ll~~~~~~g~~~~A~~~~~~m~~~--~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~----~t~~ 110 (219)
..+..+.+.|++++|...+++.... .+. ..+..+...+...|++++|...|.+..+.... ++. .+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999886421 011 12334666677778999999999998763222 332 2588
Q ss_pred HHHHHHhcccChhhHHHHHHHHHH----h-CCCc-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIR----L-GVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~----~-g~~~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
.+-..|...|+++.|...++...+ . +..+ ...+|..+-..|.+.|++ ++|.+++++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y------------------~~A~~~~~~ 221 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY------------------EESLYQVNK 221 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH------------------HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH------------------HHHHHHHHH
Confidence 888899999999999999998763 1 2222 234788888999999999 777777765
Q ss_pred CC
Q 041894 185 IP 186 (219)
Q Consensus 185 m~ 186 (219)
..
T Consensus 222 al 223 (293)
T 3u3w_A 222 AI 223 (293)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00085 Score=52.21 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=104.7
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCC-cccH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPD-HNVF 109 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~-~~t~ 109 (219)
.+...+-.+-..+.+.|++++|...|+.+. .|.+ ..++..+-.+|.+.|++++|...|+...+.. -.|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345666677778889999999999999875 3413 5678888899999999999999999987642 1122 2345
Q ss_pred HHHHHHHhc--------ccChhhHHHHHHHHHHhCCCccHHHH-----------------HHHHHHHHhcCCchhHHHHH
Q 041894 110 PSVLKSCTL--------LVDFRFGESVHACIIRLGVDLDLYTN-----------------NALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 110 ~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~ll~~y~~~g~~~~~~~~~ 164 (219)
..+-.++.. .|+++.|...++...+.... +.... ..+-..|.+.|++
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~------- 164 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELY------- 164 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH-------
Confidence 555666667 89999999999998877532 22333 3335667777777
Q ss_pred hhhhccCCcchhhHHHHhhcCCC--CCC---eeehhHHHHHHhhh
Q 041894 165 FQGFGFNGGREASVHEVLDKIPE--RNG---NVELSSGLAGCNKF 204 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~--~~~---~~~~n~ll~~~~~~ 204 (219)
++|.+.|++..+ |+. ...+..+-.+|.+.
T Consensus 165 -----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 165 -----------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp -----------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 999999988653 220 12455555566554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00059 Score=51.63 Aligned_cols=126 Identities=8% Similarity=0.009 Sum_probs=94.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHH----------------HHHHHHhcCChhHHHHHHHHhHhCCCCC-C
Q 041894 45 LLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKS----------------IIRCCTQNGLLVESLTCFVRMIGSGVYP-D 105 (219)
Q Consensus 45 ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~p-~ 105 (219)
.-..+.+.|++++|...|++.. .|.+...|.. +-..|.+.|++++|...|++..+. .| +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 3345678999999999998865 3313456666 888999999999999999998764 45 4
Q ss_pred cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 106 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
...+..+-..+...|+++.|...++...+.. +.+...+..+-.+|...|+.+. +.+...++..
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~----------------~~~~~~~~~~ 150 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK----------------KKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH----------------HHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH----------------HHHHHHHHHH
Confidence 5688888899999999999999999998876 3456778777777766654311 6677778777
Q ss_pred CCCC
Q 041894 186 PERN 189 (219)
Q Consensus 186 ~~~~ 189 (219)
..++
T Consensus 151 ~~~~ 154 (208)
T 3urz_A 151 SSPT 154 (208)
T ss_dssp -CCC
T ss_pred hCCC
Confidence 6665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0003 Score=47.82 Aligned_cols=113 Identities=9% Similarity=-0.100 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCC----cccHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPD----HNVFP 110 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~~ 110 (219)
...+..+-..+...|++++|...|.... .|.+...|..+-..+...|++++|...|.+..+.. ..++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3567777888999999999999998764 33267889999999999999999999999976542 1222 56777
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
.+-..+...|+++.|...++...+.. |+......+-.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 88888999999999999999988865 455555555444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0014 Score=53.66 Aligned_cols=155 Identities=11% Similarity=0.026 Sum_probs=112.3
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHH----HHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCCh----hhHHHHHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRF----LISRLLFIYNNFNLVHDSLCLLDTLK-----TPAPP----VAWKSIIR 79 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~----~~~~~li~ 79 (219)
.+...|+++.|...+.+..+..-..+.. +++.+-..|...|++++|...+.+.. .. +. .+++.+-.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-VWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Confidence 4557899999999999987754222222 45566677888999999999998753 12 32 33566778
Q ss_pred HHHhcCChhHHHHHHHHhHhC----CCC--CC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCC--c--cHHHHHHHH
Q 041894 80 CCTQNGLLVESLTCFVRMIGS----GVY--PD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD--L--DLYTNNALM 148 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~--~~~~~~~ll 148 (219)
.+...|++++|...+++..+. +-. |. ...+..+-..+...|+++.|...+......... + ....+..+-
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 888999999999999987542 222 32 234556677888999999999999987654322 1 245677788
Q ss_pred HHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 149 ~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
..+...|++ ++|.+.+++..
T Consensus 182 ~~~~~~g~~------------------~~A~~~l~~a~ 201 (373)
T 1hz4_A 182 QCSLARGDL------------------DNARSQLNRLE 201 (373)
T ss_dssp HHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHHHHcCCH------------------HHHHHHHHHHH
Confidence 889999999 88888877643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00087 Score=60.31 Aligned_cols=140 Identities=14% Similarity=-0.001 Sum_probs=86.6
Q ss_pred ccccCChhHHH-HHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-------------CCC---------
Q 041894 14 PVSIKTKSQAK-QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-------------PAP--------- 70 (219)
Q Consensus 14 ~~~~~~~~~a~-~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-------------~~~--------- 70 (219)
+-+.|+.+.|. .+|+..... ++.+...|-..+...-+.|+++.|..+|+.+.. | +
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p-~~~~~~~~~~ 430 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP-TNESAINQLK 430 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC-cchhhhhhhc
Confidence 33456666775 777777642 344556667777777778888888888776531 2 2
Q ss_pred ---hhhHHHHHHHHHhcCChhHHHHHHHHhHhC-C-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 71 ---PVAWKSIIRCCTQNGLLVESLTCFVRMIGS-G-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 71 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
..+|...+....+.|+.+.|..+|...++. + ..+...+..+.|.-.+ .++.+.|+.+|+...+. ...+...+.
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~ 508 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHH
Confidence 235777777777777888888888877665 2 1222222233333222 24577888888776655 334555666
Q ss_pred HHHHHHHhcCCc
Q 041894 146 ALMNMYAQSQNM 157 (219)
Q Consensus 146 ~ll~~y~~~g~~ 157 (219)
..++.....|+.
T Consensus 509 ~y~~fe~~~~~~ 520 (679)
T 4e6h_A 509 KYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHHHTCH
T ss_pred HHHHHHHhCCCH
Confidence 777777777777
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00054 Score=52.09 Aligned_cols=141 Identities=8% Similarity=-0.067 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----ChhHHHHHHHHh
Q 041894 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG----LLVESLTCFVRM 97 (219)
Q Consensus 22 ~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m 97 (219)
+|.+.|.+..+.| +...+..|=..|...+++++|...|.....+++..++..|=..|.. + ++++|.+.|+.-
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4667788777775 6677777888888899999999999987655477888888777877 6 899999999998
Q ss_pred HhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCC-ccHHHHHHHHHHHHh----cCCchhHHHHHhhhh
Q 041894 98 IGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVD-LDLYTNNALMNMYAQ----SQNMDMHIYDRFQGF 168 (219)
Q Consensus 98 ~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~y~~----~g~~~~~~~~~~~~~ 168 (219)
.+.| +...+..+-..|.. .++.+.|...+....+.|.. .+...+..|=..|.. .+++
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~----------- 145 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD----------- 145 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH-----------
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH-----------
Confidence 7765 44566666666766 78999999999998877642 135677777777777 6667
Q ss_pred ccCCcchhhHHHHhhcCCC
Q 041894 169 GFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.++|++..+
T Consensus 146 -------~~A~~~~~~A~~ 157 (212)
T 3rjv_A 146 -------VKASEYFKGSSS 157 (212)
T ss_dssp -------HHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHH
Confidence 999999987653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00071 Score=46.82 Aligned_cols=97 Identities=8% Similarity=-0.059 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
+...|..+-..+...|++++|...|....+.. +.+...|..+-.++...|+++.|...++...+.. +.+...+..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 67788899999999999999999999976642 2245678888888999999999999999988876 346778889999
Q ss_pred HHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 150 MYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 150 ~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+|...|++ ++|.+.|++..
T Consensus 86 ~~~~~~~~------------------~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESY------------------DEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHhhH------------------HHHHHHHHHHH
Confidence 99999999 89988888755
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00056 Score=55.02 Aligned_cols=150 Identities=9% Similarity=-0.029 Sum_probs=105.7
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC----h
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLE---PN--SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP----P 71 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~---~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~----~ 71 (219)
.+|+.+-..|.+.|+++.|...|.+..+.-. .+ -..+++.+-..|.+ |++++|...|++.. ..++ .
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 4677788888899999999999998765421 11 13567777788888 99999999987653 1101 3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCC-cc---HH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-LD---LY 142 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~---~~ 142 (219)
.+++.+-..|.+.|++++|...|++..+. +..++. ..+..+...+...|+++.|...++... .... ++ ..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 67888999999999999999999997642 222222 255666667777899999999999876 3211 11 22
Q ss_pred HHHHHHHHHHhcCCc
Q 041894 143 TNNALMNMYAQSQNM 157 (219)
Q Consensus 143 ~~~~ll~~y~~~g~~ 157 (219)
....++.+| ..|+.
T Consensus 235 ~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDE 248 (307)
T ss_dssp HHHHHHHHH-HTTCH
T ss_pred HHHHHHHHH-HhcCH
Confidence 345555655 56666
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.61 E-value=7.5e-05 Score=51.11 Aligned_cols=84 Identities=8% Similarity=-0.012 Sum_probs=58.1
Q ss_pred ccCChhHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTL--EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..|+++.|...|.+.++.+ -+.+...+..+-..|.+.|++++|...|++.. .|.+..++..+-.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3577888888888887764 12345567777778888888888888887754 3325677777888888888888888
Q ss_pred HHHHHhHh
Q 041894 92 TCFVRMIG 99 (219)
Q Consensus 92 ~~~~~m~~ 99 (219)
..|++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.001 Score=47.95 Aligned_cols=96 Identities=6% Similarity=-0.083 Sum_probs=82.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
+...|..+-..+.+.|++++|...|++..+. .| +...|..+-.+|.+.|+++.|...++...+.. ..+...|..+-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3567888889999999999999999997764 34 56678888899999999999999999988876 34678889999
Q ss_pred HHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 149 ~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+|.+.|++ ++|.+.|++..
T Consensus 87 ~~~~~~g~~------------------~~A~~~~~~al 106 (164)
T 3sz7_A 87 LARFDMADY------------------KGAKEAYEKGI 106 (164)
T ss_dssp HHHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHccCH------------------HHHHHHHHHHH
Confidence 999999999 99999998766
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0025 Score=53.56 Aligned_cols=178 Identities=11% Similarity=-0.090 Sum_probs=117.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcC------CCC-cHHHHHHHHHHHhh--cCCHHHHHHHHHhcC--CCCChh
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTL------EPN-SRFLISRLLFIYNN--FNLVHDSLCLLDTLK--TPAPPV 72 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g------~~~-~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~--~~~~~~ 72 (219)
..+|+.+-..|...|+++.|...+++..+.. ..+ ...+++.+-.++.+ .+++++|...|++.. .|.+..
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 4678888889999999999999999886531 112 23455544434443 457999999998754 442555
Q ss_pred hHHHHHHH---HHhcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHh----cccChhhHHHHHHHHHHhCCCccHHHH
Q 041894 73 AWKSIIRC---CTQNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCT----LLVDFRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 73 ~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
.+..+... +...++.++|++.|+...+. .|+. ..+..+-..+. ..++.+.|.++++...... +.+..++
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 55554444 45567888999998886653 4543 34444444443 3467889999999887765 4567788
Q ss_pred HHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHh
Q 041894 145 NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCN 202 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~ 202 (219)
..+-..|.+.|++ ++|.+.|++..+ |+....|..+-..|.
T Consensus 251 ~~lg~~~~~~~~~------------------~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 251 RSAAKFYRRKDEP------------------DKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHHTTCH------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCch------------------HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 8899999999999 999999887653 331445555544443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00058 Score=48.24 Aligned_cols=96 Identities=7% Similarity=-0.153 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
+...+..+-..+.+.|++++|...|+...+. .| +...|..+-.++.+.|+++.|...++...+.. +.+...+..+-
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 3455666778888999999999999998764 45 45677788888999999999999999988876 34566788888
Q ss_pred HHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 149 ~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+|...|++ ++|.+.|++..
T Consensus 94 ~~~~~~g~~------------------~~A~~~~~~al 113 (142)
T 2xcb_A 94 ECHLQLGDL------------------DGAESGFYSAR 113 (142)
T ss_dssp HHHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHcCCH------------------HHHHHHHHHHH
Confidence 999999999 99999998765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00042 Score=59.65 Aligned_cols=147 Identities=10% Similarity=0.038 Sum_probs=105.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~ 87 (219)
+-..+.+.|++++|...|++..+.. +.+..+|..+-.+|.+.|++++|...+++.. .|.+..+|..+-.+|.+.|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778999999999999998874 4467889999999999999999999998764 332678899999999999999
Q ss_pred hHHHHHHHHhHhCCCCCC-cccHHHHHHH--HhcccChhhHHHHHH-----------HHHHh-----CC-----CccHHH
Q 041894 88 VESLTCFVRMIGSGVYPD-HNVFPSVLKS--CTLLVDFRFGESVHA-----------CIIRL-----GV-----DLDLYT 143 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~--~~~~g~~~~a~~~~~-----------~m~~~-----g~-----~~~~~~ 143 (219)
++|.+.|++..+. .|+ ...+..+-.+ +.+.|++++|.+.++ ..... +. ..+...
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~ 168 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISF 168 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHH
Confidence 9999999997764 343 3344444444 778899999999887 21110 10 123456
Q ss_pred HHHHHHHHHhcCCchh
Q 041894 144 NNALMNMYAQSQNMDM 159 (219)
Q Consensus 144 ~~~ll~~y~~~g~~~~ 159 (219)
...++..+-+.+.+..
T Consensus 169 l~~lie~l~~~~~l~e 184 (477)
T 1wao_1 169 MKELMQWYKDQKKLHR 184 (477)
T ss_dssp HHHHHHHHHTCCCCCH
T ss_pred HHHHHHHHHcCCCCCH
Confidence 6677777777666643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0012 Score=49.27 Aligned_cols=142 Identities=7% Similarity=-0.048 Sum_probs=95.8
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh----------------hhH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP----------------VAW 74 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~----------------~~~ 74 (219)
.....++++.+...|+.-.+.. ......+..+-..+.+.|++++|...|++.. .|.+. .+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344455555555554322211 1123456666677888999999999998753 12133 678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
..+-.+|.+.|++++|...|+...+.. +.+...+..+-.+|...|+++.|...++...+.. +.+...+..+-.++.+.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence 888889999999999999999877642 2345677788888899999999999999887765 33566777888888887
Q ss_pred CCc
Q 041894 155 QNM 157 (219)
Q Consensus 155 g~~ 157 (219)
++.
T Consensus 170 ~~~ 172 (198)
T 2fbn_A 170 KEA 172 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 777
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00091 Score=49.86 Aligned_cols=129 Identities=10% Similarity=-0.033 Sum_probs=90.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCC-CC---c-----------HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CC
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PN---S-----------RFLISRLLFIYNNFNLVHDSLCLLDTLK--TP 68 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~---~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~ 68 (219)
.+..+=..+.+.|+++.|...|.+..+..- .| . ..+|..+-.+|.+.|++++|...++... .|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 455555677889999999999999987531 12 1 2678888889999999999999998764 33
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHH-HHHHHHHHhC
Q 041894 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGE-SVHACIIRLG 136 (219)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~-~~~~~m~~~g 136 (219)
.+..+|..+-.+|...|++++|...|++..+. .|+ ...+..+-..+...++.+++. ..+..|...+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 27788999999999999999999999997654 454 456666666667777777666 4455554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0012 Score=55.69 Aligned_cols=121 Identities=10% Similarity=0.052 Sum_probs=60.9
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc-------
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN------- 84 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~------- 84 (219)
....++++.|.+.+++..+.. +.+..++..+-..|.+.|++++|...|.... .|.+..+|..+-.+|...
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp C------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 334556677777777766554 3355666777777777777777777776543 231334444433333211
Q ss_pred ------------CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 85 ------------GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 85 ------------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+..++|...|....+.. +.+..++..+-..+...|++++|...++...+..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 12344444454443321 1233455555555556666666666655555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00091 Score=45.87 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
...|..+-..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|+++.|...++...+.. +.+...|..+-.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456777788899999999999999977642 2345788888899999999999999999988875 3457788888999
Q ss_pred HHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 151 YAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 151 y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
|...|++ ++|.+.|++..
T Consensus 82 ~~~~~~~------------------~~A~~~~~~al 99 (126)
T 3upv_A 82 QIAVKEY------------------ASALETLDAAR 99 (126)
T ss_dssp HHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHhCH------------------HHHHHHHHHHH
Confidence 9999999 88888888654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0014 Score=45.64 Aligned_cols=96 Identities=9% Similarity=-0.024 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD----HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
+...+..+-..+...|++++|...|++..+. .|+ ...|..+-..|...|++++|...++...+.. ..+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5678888999999999999999999998764 566 5778888888999999999999999988765 33577888
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+-.+|...|++ ++|.+.|++..
T Consensus 104 ~~a~~~~~~~~~------------------~~A~~~~~~al 126 (148)
T 2dba_A 104 RRSQALEKLGRL------------------DQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCCH------------------HHHHHHHHHHH
Confidence 888999999999 99999998765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00076 Score=46.53 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=46.7
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChh
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFR 123 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~ 123 (219)
..+.+.|++++|...|+... .|.+...|..+=.++...|++++|...|++..+. .|+ ...+..+-.++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 34555666666666665543 2224555555555666666666666666554432 232 334555555556666666
Q ss_pred hHHHHHHHHHH
Q 041894 124 FGESVHACIIR 134 (219)
Q Consensus 124 ~a~~~~~~m~~ 134 (219)
+|...++...+
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 66666655543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0013 Score=52.80 Aligned_cols=133 Identities=7% Similarity=-0.123 Sum_probs=91.6
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCC
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP----VAWKSIIRCCTQNGL 86 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~li~~~~~~g~ 86 (219)
...+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|.......+. ..+..+=.++...|+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 344566789999999988877644 54435555555888899999999999765432022 245566678888899
Q ss_pred hhHHHHHHHHhHhCCCCCCcc--cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 87 LVESLTCFVRMIGSGVYPDHN--VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
+++|+..|++-......|... .....-.++.+.|+.++|..+|+.+..... +...+.+|
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~~~~~~aL 247 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--EPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--CHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cHHHHHHH
Confidence 999999998876544336532 334445566788999999999999888763 34444444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00043 Score=51.18 Aligned_cols=110 Identities=9% Similarity=-0.100 Sum_probs=79.1
Q ss_pred hhcCCHHHHHH---HHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh----CCCCC-CcccHHHHHHHHhcccC
Q 041894 50 NNFNLVHDSLC---LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG----SGVYP-DHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 50 ~~~g~~~~A~~---~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~ 121 (219)
...|++++|.+ .+..-+.. ...+++.+-..+...|++++|...|++..+ .+..| ....+..+-..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPAT-ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999 55443333 567889999999999999999999998764 22222 23567777788889999
Q ss_pred hhhHHHHHHHHHHh----CCCc--cHHHHHHHHHHHHhcCCchhH
Q 041894 122 FRFGESVHACIIRL----GVDL--DLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 122 ~~~a~~~~~~m~~~----g~~~--~~~~~~~ll~~y~~~g~~~~~ 160 (219)
++.|...+....+. +-.+ ....+..+-..|...|+++.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 126 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGA 126 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999998885543 2122 355678888899999999444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0017 Score=58.51 Aligned_cols=151 Identities=6% Similarity=-0.065 Sum_probs=106.6
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCC---------CC------------cHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE---------PN------------SRFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~---------~~------------~~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
.|-..+...-+.|+++.|..+|+.+.+... .| ...+|-..+...-+.|.++.|+.+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555666678999999999999987520 13 234788888888899999999999987
Q ss_pred cC-C-CC-ChhhHHHHHHHHHh-cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC--
Q 041894 65 LK-T-PA-PPVAWKSIIRCCTQ-NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-- 138 (219)
Q Consensus 65 m~-~-~~-~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-- 138 (219)
.. . |. ....|-....--.+ .++++.|..+|+..++. ..-+...|...++-....|+.+.|+.+|+........
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 64 2 20 22333322222223 35699999999997765 2234455667788778889999999999998776532
Q ss_pred ccHHHHHHHHHHHHhcCCc
Q 041894 139 LDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 139 ~~~~~~~~ll~~y~~~g~~ 157 (219)
-....|...++.-.+.|+.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 2456788888888888888
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00079 Score=47.24 Aligned_cols=129 Identities=11% Similarity=-0.046 Sum_probs=86.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC----
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-NS----RFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP---- 70 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~---- 70 (219)
.++..+-..+...|+++.|...+.+..+..-. ++ ..++..+-..|...|++++|...+++.. .+ +
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CcHHH
Confidence 35566666777888888888888877654211 11 1366777778888888888888887643 11 2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
..++..+-..+...|++++|...+++..+. +-.+ ....+..+-..+...|+++.|...++...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345677777888888888888888775432 2111 124566666777778888888887776543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00053 Score=59.04 Aligned_cols=115 Identities=9% Similarity=-0.010 Sum_probs=87.6
Q ss_pred HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 124 (219)
.+.+.|++++|...|++.. .|.+..+|..+-.+|.+.|++++|.+.|++..+. .|+ ...|..+-.+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 4567899999999998754 3426889999999999999999999999998765 454 5678888889999999999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHH--HHhcCCchhHHHHHhhhhccCCcchhhHHHHhh
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNM--YAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~--y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 183 (219)
|...++...+.... +...+..+-.+ +.+.|++ ++|.++++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~------------------~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAF------------------ERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHH------------------CCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH------------------HHHhcccc
Confidence 99999998876532 33344444444 8888999 77777776
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0032 Score=47.94 Aligned_cols=131 Identities=12% Similarity=0.111 Sum_probs=95.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCC-CcH-HHHHHHHHHHh------------------hcCCHHHHHHHHHh
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-NSR-FLISRLLFIYN------------------NFNLVHDSLCLLDT 64 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-~~~-~~~~~ll~~~~------------------~~g~~~~A~~~~~~ 64 (219)
..+..+-.++.+.|+++.|...|++..+..-. +.. ..+..+-.++. ..|+.++|...|+.
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 45666778899999999999999999876422 221 13333333333 36789999999988
Q ss_pred cC--CCCChhhHH-----------------HHHHHHHhcCChhHHHHHHHHhHhCCCCCCc----ccHHHHHHHHhcccC
Q 041894 65 LK--TPAPPVAWK-----------------SIIRCCTQNGLLVESLTCFVRMIGSGVYPDH----NVFPSVLKSCTLLVD 121 (219)
Q Consensus 65 m~--~~~~~~~~~-----------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~ 121 (219)
+. .|.+..++. .+-..|.+.|++++|...|+++.+. .|+. ..+..+..++.+.|+
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCC
Confidence 75 341333332 3445678899999999999998865 3543 457788899999999
Q ss_pred hhhHHHHHHHHHHhCC
Q 041894 122 FRFGESVHACIIRLGV 137 (219)
Q Consensus 122 ~~~a~~~~~~m~~~g~ 137 (219)
.+.|.+.++.+...+.
T Consensus 200 ~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 200 NAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHHhhCC
Confidence 9999999998887764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00075 Score=47.38 Aligned_cols=126 Identities=12% Similarity=-0.008 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcCC-----CCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCC-
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLKT-----PAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPD- 105 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~- 105 (219)
.++..+-..|...|++++|...+.+... + + ..++..+-..+...|++++|...|++..+. +-.+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4567777788999999999999987541 2 2 247888889999999999999999986542 11111
Q ss_pred cccHHHHHHHHhcccChhhHHHHHHHHHHh----CCC-ccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHH
Q 041894 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVD-LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180 (219)
Q Consensus 106 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~ 180 (219)
...+..+-..+...|+++.|...++...+. +.. .....+..+-..|...|++ ++|.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------~~A~~ 150 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH------------------DQAMH 150 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH------------------HHHHH
Confidence 346677778888999999999998886543 211 1245677788889999999 88877
Q ss_pred Hhhc
Q 041894 181 VLDK 184 (219)
Q Consensus 181 l~~~ 184 (219)
.+++
T Consensus 151 ~~~~ 154 (164)
T 3ro3_A 151 FAEK 154 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0031 Score=42.93 Aligned_cols=85 Identities=12% Similarity=-0.011 Sum_probs=41.2
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hhhHHHHHHHHHhcC
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSR---FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PVAWKSIIRCCTQNG 85 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~~~~~li~~~~~~g 85 (219)
+.+.|+++.|...|....+..- .+. ..+..+-..|.+.|++++|...|+... .|.+ ..++..+-.++...|
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 3445555555555555554321 111 244444445555555555555555432 2212 233444455555555
Q ss_pred ChhHHHHHHHHhHh
Q 041894 86 LLVESLTCFVRMIG 99 (219)
Q Consensus 86 ~~~~a~~~~~~m~~ 99 (219)
++++|...|++..+
T Consensus 91 ~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 91 KNTEAQQTLQQVAT 104 (129)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0015 Score=45.36 Aligned_cols=88 Identities=7% Similarity=0.009 Sum_probs=41.8
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCC----cccHHHHHHHHhc
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPD----HNVFPSVLKSCTL 118 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~~~ll~~~~~ 118 (219)
..+.+.|++++|+..|++.. .|.+..+|+.+=.+|.+.|++++|.+.|+...+-. ..++ ..+|..+-.++..
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH
Confidence 34455555555555554432 22144555555555555555555555555543210 1111 1134444455555
Q ss_pred ccChhhHHHHHHHHHH
Q 041894 119 LVDFRFGESVHACIIR 134 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~ 134 (219)
.|+++.|...++...+
T Consensus 96 ~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 96 QNDLSLAVQWFHRSLS 111 (127)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5566666655555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0041 Score=42.31 Aligned_cols=89 Identities=10% Similarity=-0.100 Sum_probs=50.7
Q ss_pred HHHHhhcCCHHHHHHHHHhcC--CCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----cccHHHHHHHH
Q 041894 46 LFIYNNFNLVHDSLCLLDTLK--TPAPP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD----HNVFPSVLKSC 116 (219)
Q Consensus 46 l~~~~~~g~~~~A~~~~~~m~--~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~ 116 (219)
-..+.+.|++++|...|+... .|.+. .++..+-.++.+.|++++|...|+...+. .|+ ...+..+-.++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHH
Confidence 345556666777766666543 23122 35555566666666777776666665543 233 23344455556
Q ss_pred hcccChhhHHHHHHHHHHhC
Q 041894 117 TLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g 136 (219)
...|+++.|...++...+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666665543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0016 Score=44.93 Aligned_cols=95 Identities=12% Similarity=-0.074 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
.+-.+-..+.+.|++++|...|+...+. .| +...|..+-.++...|+++.|...++...+... .+...+..+-.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3555667788899999999999998764 45 456777788888999999999999999888763 3567888899999
Q ss_pred HhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 152 AQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 152 ~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
.+.|++ ++|.+.|++..+.
T Consensus 96 ~~~g~~------------------~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNA------------------NAALASLRAWLLS 114 (121)
T ss_dssp HHHHHH------------------HHHHHHHHHHHC-
T ss_pred HHcCCH------------------HHHHHHHHHHHHh
Confidence 999999 9999999876543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0031 Score=53.85 Aligned_cols=117 Identities=9% Similarity=-0.101 Sum_probs=51.7
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCc--------------HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--------------RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP 70 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~ 70 (219)
|...=..+.+.|+++.|...|.+.++..-... ...|..+-.+|.+.|++++|...++... .|.+
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 350 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 350 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 33333444555555555555555544321110 2444444445555555555555554432 1214
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFG 125 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 125 (219)
..+|..+-.+|...|++++|...|+...+. .|+ ...+..+-..+.+.++.+.+
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554432 232 23344444444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0025 Score=44.20 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=77.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCCh-------hhHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPP-------VAWK 75 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~-------~~~~ 75 (219)
.++..+=..+.+.|+++.|...|.+.++.. +-+...|+.+=.+|.+.|++++|+..|+...+ |.+. .+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345555567889999999999999998875 44677888899999999999999999987541 1011 3566
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccH
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVF 109 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 109 (219)
.+=.++...|++++|.+.|+.-++. .||..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 6667788889999999999886653 4665433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00027 Score=47.05 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=44.1
Q ss_pred CCChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 1 ~P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
+++...|..+-..+.+.|+++.|...|++..+.. +.+...+..+-.+|.+.|++++|...|+...
T Consensus 1 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp CTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3555666666667777777777777777776654 3355666666677777777777777776643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0037 Score=53.32 Aligned_cols=116 Identities=6% Similarity=0.061 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---------------PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
...|..+=..|.+.|++++|...|+... .|.+ ..+|..+-.+|.+.|++++|...|++.++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 4467777788999999999999998754 2213 578999999999999999999999998764
Q ss_pred CCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 102 VYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 102 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.| +...|..+-.+|...|+++.|...++...+.. +.+...+..+-.++.+.|+.
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 34 45678888889999999999999999987764 23567888888899999988
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.023 Score=44.88 Aligned_cols=128 Identities=4% Similarity=-0.112 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh------hhHHHHHHHHHhcCChhHHHHHHHHhHhCCC---CCC--cc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV---YPD--HN 107 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~ 107 (219)
.+...+..+...|++++|.+.+.+.. .+... ..+..+-..+...|++++|...|.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44566778899999999999987543 12011 2234455667778899999999998764321 121 34
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHHH---Hh-CCCc--cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHH
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACII---RL-GVDL--DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m~---~~-g~~~--~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l 181 (219)
+|+.+-..|...|+++.|...++... +. +-.+ ...+++.+-..|.+.|++ ++|.++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y------------------~~Al~~ 218 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY------------------EESLYQ 218 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH------------------HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH------------------HHHHHH
Confidence 77888889999999999999998865 22 1122 225888889999999999 888888
Q ss_pred hhcCC
Q 041894 182 LDKIP 186 (219)
Q Consensus 182 ~~~m~ 186 (219)
|++..
T Consensus 219 ~~kal 223 (293)
T 2qfc_A 219 VNKAI 223 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0046 Score=49.57 Aligned_cols=128 Identities=6% Similarity=-0.189 Sum_probs=93.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHh
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCT 117 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 117 (219)
+-.+...+...|++++|.++|+.+. .| +....-.+-..+.+.+++++|...|+...+.. .|. ...+..+=.++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p-~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGS-EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 3445667888999999999999986 44 33354455557888999999999997543321 111 235666778889
Q ss_pred cccChhhHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 118 LLVDFRFGESVHACIIRLGVDLD--LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
+.|++++|...++........|. .......-.++.+.|+. ++|..+|+++...+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~------------------deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE------------------SAAVALLEWLQTTH 238 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH------------------HHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHhcC
Confidence 99999999999998875433253 33556667788899999 89999988877544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.014 Score=49.67 Aligned_cols=138 Identities=9% Similarity=0.058 Sum_probs=84.4
Q ss_pred HHHHHHhCccccC---ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc----CCHHHHHHHHHhcCCCCChhhHHHHH
Q 041894 6 TLINLLKNPVSIK---TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF----NLVHDSLCLLDTLKTPAPPVAWKSII 78 (219)
Q Consensus 6 ~~~~ll~~~~~~~---~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~li 78 (219)
++..+=..+.+.| +.+.|...|.+..+.| .++...+..|-..|... ++.++|...|.... |++..++..+=
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg 255 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLA 255 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 3444444555566 7778888888887777 33444444444455443 67888888887766 54666666665
Q ss_pred HH-H--HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc-----ChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 79 RC-C--TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV-----DFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 79 ~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
.. + ...+++++|...|+.-.+.| +...+..+-..|. .| +.+.|...+.... .-+...+..|=..
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 55 3 35678888888888877666 3344444444444 44 7777777776654 2334445555555
Q ss_pred HHh
Q 041894 151 YAQ 153 (219)
Q Consensus 151 y~~ 153 (219)
|..
T Consensus 328 y~~ 330 (452)
T 3e4b_A 328 YRR 330 (452)
T ss_dssp HHT
T ss_pred HHC
Confidence 554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0098 Score=49.32 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=102.9
Q ss_pred hCccccCChhHHHHHHHHHHHcCCCC-c---------------HHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCCh
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEPN-S---------------RFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPP 71 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~~-~---------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~ 71 (219)
+.+.+.|++++|.+.|..+++..-.. + ...+..|...|.+.|++++|.+.+.... .-++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34567899999999999998754221 1 1246788899999999999999998764 11021
Q ss_pred h---hHHHHH-HHHHhcCChhHHHHHHHHhHh----CCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh--CC--C
Q 041894 72 V---AWKSII-RCCTQNGLLVESLTCFVRMIG----SGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL--GV--D 138 (219)
Q Consensus 72 ~---~~~~li-~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~--~ 138 (219)
. .....+ ..+...|++++|..++.+... .+..+. ..++..+...+...|+++.|..++...... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 122233 333345889999999988643 333443 346778889999999999999998886543 11 1
Q ss_pred c-cHHHHHHHHHHHHhcCCc
Q 041894 139 L-DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 139 ~-~~~~~~~ll~~y~~~g~~ 157 (219)
+ ...++..+...|...|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~ 191 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNL 191 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHHhCcH
Confidence 2 356888889999999999
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.006 Score=50.64 Aligned_cols=114 Identities=6% Similarity=-0.023 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCC------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKT------------------PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 102 (219)
.+..+=..+.+.|++++|...|++... |.+..+|+.+-.+|.+.|++++|...+++.++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 355666677888888888887765432 114577888889999999999999999988764
Q ss_pred CC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 103 YP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 103 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.| +...|..+-.+|...|++++|...++...+.. +.+...+..+-.++.+.++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 45 45677778888899999999999999887765 23566777777777777777
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00066 Score=46.23 Aligned_cols=100 Identities=10% Similarity=0.056 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhh
Q 041894 51 NFNLVHDSLCLLDTLKT-----PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 51 ~~g~~~~A~~~~~~m~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 124 (219)
..|++++|+..|++... |.+..+|..+-..|...|++++|...|++..+. .|+ ...+..+-.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 34666777777765432 213456667777777777777777777776553 233 4456666666777777777
Q ss_pred HHHHHHHHHHhCC-CccHHHHHHHHHHHH
Q 041894 125 GESVHACIIRLGV-DLDLYTNNALMNMYA 152 (219)
Q Consensus 125 a~~~~~~m~~~g~-~~~~~~~~~ll~~y~ 152 (219)
|...+....+... .|+...|...|..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 7777776554432 233434444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0014 Score=43.41 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc-------HHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD-------LYT 143 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~ 143 (219)
..|..+-..+...|++++|...|++..+. .| +...|..+-.++.+.|+++.|...++...+.. |+ ...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 34555555556666666666666655432 22 33445555555566666666666666555432 22 334
Q ss_pred HHHHHHHHHhcCCc
Q 041894 144 NNALMNMYAQSQNM 157 (219)
Q Consensus 144 ~~~ll~~y~~~g~~ 157 (219)
+..+-.++...|+.
T Consensus 81 ~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 81 QYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhH
Confidence 44444555555555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.011 Score=46.90 Aligned_cols=96 Identities=7% Similarity=-0.123 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~ 114 (219)
+...+..+-..+.+.|++++|...|.... .|.+...|..+-.+|.+.|++++|...|+...+. .|+ ...+..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45567777788999999999999998764 3427788999999999999999999999987754 454 467788888
Q ss_pred HHhcccChhhHHHHHHHHHHh
Q 041894 115 SCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~ 135 (219)
++...|++++|...+....+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999886654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0051 Score=51.09 Aligned_cols=120 Identities=9% Similarity=-0.053 Sum_probs=91.0
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHc--------------CC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CC
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT--------------LE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TP 68 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~--------------g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~ 68 (219)
.|..+=..+.+.|+++.|...|.+.++. .. +.+..+|..+-.+|.+.|++++|...++... .|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4556666788999999999999998862 02 2245678888889999999999999998764 33
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHH
Q 041894 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
.+..+|..+-.+|...|++++|...|++..+. .|+ ...+..+-..+...++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 26788999999999999999999999997754 454 4455555555566666655543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0071 Score=52.28 Aligned_cols=120 Identities=10% Similarity=-0.039 Sum_probs=70.6
Q ss_pred ccccCChhHHHHHHHHHHHcC---C---CC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----------CCCC-hhhHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTL---E---PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK----------TPAP-PVAWK 75 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g---~---~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----------~~~~-~~~~~ 75 (219)
+...|++++|+.++.+.++.. + +| ...+++.|...|...|++++|+.++.+.- .| + ..+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-QLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHH
Confidence 446677777777777665432 2 22 22356777777777777777777665532 12 2 25577
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHh---CCCCCCc----ccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIG---SGVYPDH----NVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
.|-..|...|++++|..+|++-++ .-.-||. .+.+.+-.++...+.+++|+.++..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766432 1122332 2333444455556667777777666643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0067 Score=43.43 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
..+|..+-.+|.+.|++++|...++..++. .| +...|..+-.+|...|+++.|...+....+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 355666666666667777776666665543 23 33455666666666677777776666665543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.008 Score=49.07 Aligned_cols=127 Identities=8% Similarity=-0.046 Sum_probs=72.3
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHH------------------HHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRF------------------LISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~------------------~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
..+...=..+.+.|+++.|...|.+..+.. |+.. .|..+-.+|.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556667888999999999999887653 3332 67778888888999999998887653
Q ss_pred --CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHH-HhcccChhhHHHHHHHHHHh
Q 041894 67 --TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKS-CTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 67 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~-~~~~g~~~~a~~~~~~m~~~ 135 (219)
.|.+..+|..+-.+|...|++++|...|+...+. .|+.. .+..+-.. ....+..+.+..++..|...
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 2326788888888999999999999998887543 45432 33333222 12335566666777766544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0082 Score=40.26 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
+...|....+.. +.+...+..+-..|.+.|++++|...|+... .|.+..+|..+-.+|...|++++|...|+...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444432 2244555555556666666666666665432 22144555555556666666666666655543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.022 Score=40.08 Aligned_cols=117 Identities=10% Similarity=-0.044 Sum_probs=90.5
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----NGLLV 88 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~ 88 (219)
+..-.++++.|..+|.+..+.| .|... |=..|...+.+++|.+.|......++..++..|=..|.. .++++
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CcCCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHH
Confidence 3344467899999999999988 33333 555667777889999999876544378888888888888 78999
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCC
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~ 137 (219)
+|.+.|+.-.+.| +...+..|-..|.. .++.+.|...++.-.+.|.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999988776 44556666666666 7899999999998888774
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0088 Score=42.80 Aligned_cols=97 Identities=6% Similarity=-0.014 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC-------CC---------CC-CcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS-------GV---------YP-DHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
..+...=..+.+.|++++|...|....+. .- .| +...|..+-.+|.+.|+++.|...+....+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555556677778888888888775542 00 12 235777788889999999999999999888
Q ss_pred hCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 135 ~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
.. +.+...|..+-.+|...|++ ++|.+.|++..+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~------------------~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKL------------------DEAEEDLKLLLR 125 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcH------------------HHHHHHHHHHHh
Confidence 76 44677888899999999999 999998887663
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.029 Score=46.45 Aligned_cols=155 Identities=8% Similarity=-0.019 Sum_probs=108.3
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcHH----HHHHHHHHHhhcCCHHHHHHHHHhcC--------CCCChh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRF----LISRLLFIYNNFNLVHDSLCLLDTLK--------TPAPPV 72 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~--------~~~~~~ 72 (219)
++..+...|.+.|+++.|...+..+.+.- -.++.. +.+.+=..+...|+.+.|..++.... .+.-..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46778889999999999999999876532 222222 22233334456788999998887653 110135
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhC--CC--CCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh--CC-Cc---cH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGS--GV--YPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL--GV-DL---DL 141 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~-~~---~~ 141 (219)
++..+...|...|++++|..++.+.... +. .|. ..++..+...|...|+++.|..++...... .+ .| -.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999987543 21 121 247888899999999999999998875432 22 22 14
Q ss_pred HHHHHHHHHHHhcCCchhH
Q 041894 142 YTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 142 ~~~~~ll~~y~~~g~~~~~ 160 (219)
..+..+...+...|+++.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 5667777778888888544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0039 Score=50.95 Aligned_cols=126 Identities=7% Similarity=-0.100 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh------------------hhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP------------------VAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
..+..+=..+.+.|++++|...|.... .| +. .+|+.+-.+|.+.|++++|...|+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666678889999999999998743 33 32 2788888999999999999999998775
Q ss_pred CCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHHHHHHHH-HhcCCchhHHHHHhhhhccCCcchh
Q 041894 100 SGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNNALMNMY-AQSQNMDMHIYDRFQGFGFNGGREA 176 (219)
Q Consensus 100 ~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y-~~~g~~~~~~~~~~~~~~~~~g~~~ 176 (219)
. .| +...|..+-.+|...|+++.|...++...+.. | +...+..|-... ...+.. +
T Consensus 259 ~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~------------------~ 316 (338)
T 2if4_A 259 E--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALY------------------Q 316 (338)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH------------------H
Confidence 4 35 45678888889999999999999998875543 3 334444444432 233444 7
Q ss_pred hHHHHhhcCCCC
Q 041894 177 SVHEVLDKIPER 188 (219)
Q Consensus 177 ~a~~l~~~m~~~ 188 (219)
++.++|.+|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 788888877643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0059 Score=52.81 Aligned_cols=122 Identities=9% Similarity=-0.096 Sum_probs=91.1
Q ss_pred HHhhcCCHHHHHHHHHhcC-------CCC--C-hhhHHHHHHHHHhcCChhHHHHHHHHhHh---CCCCCC----cccHH
Q 041894 48 IYNNFNLVHDSLCLLDTLK-------TPA--P-PVAWKSIIRCCTQNGLLVESLTCFVRMIG---SGVYPD----HNVFP 110 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~-------~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~----~~t~~ 110 (219)
.+-..|++++|+.++.+.- .+. + ..+++.|...|...|++++|..++++.++ .-..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999998886542 220 2 36799999999999999999999998653 223333 35788
Q ss_pred HHHHHHhcccChhhHHHHHHHHH-----HhCCC-c-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhh
Q 041894 111 SVLKSCTLLVDFRFGESVHACII-----RLGVD-L-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~-~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 183 (219)
.|-..|...|++++|+.+++... ..|.. | ...+.+.|-.++...|++ ++|+.++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~------------------~~ae~~~~ 459 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF------------------RQNEFMYH 459 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
Confidence 89999999999999999988743 23533 2 244556666888888888 88998888
Q ss_pred cCCC
Q 041894 184 KIPE 187 (219)
Q Consensus 184 ~m~~ 187 (219)
++++
T Consensus 460 ~~~~ 463 (490)
T 3n71_A 460 KMRE 463 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.025 Score=35.57 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.|..+-..+...|++++|...|++..+.. +.+...+..+-..+.+.|+++.|...++...+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444444555555555554443321 112233444444445555555555555544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.021 Score=35.94 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
...+..+-..+.+.|++++|...|+... .|.+..+|..+-..+.+.|++++|...|++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455555566667777777777776543 221556666677777777777777777776554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.022 Score=37.38 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
..+|..+-..|...|++++|...|++..+. .| +...|..+-.+|...|++++|...++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444555555555555555544432 12 2234444444445555555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.024 Score=37.83 Aligned_cols=63 Identities=6% Similarity=-0.081 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
+...|..+-..|...|++++|...|++..+. .|+ ...|..+-.++...|+++.|...++...+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666676666666665543 232 34555555666666666666666666544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.083 Score=44.73 Aligned_cols=105 Identities=10% Similarity=-0.023 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcC---CHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhc----CChhHHHHHHHHhHhCCCCCCcccHHH
Q 041894 41 LISRLLFIYNNFN---LVHDSLCLLDTLKTPA--PPVAWKSIIRCCTQN----GLLVESLTCFVRMIGSGVYPDHNVFPS 111 (219)
Q Consensus 41 ~~~~ll~~~~~~g---~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~ 111 (219)
.+..|=..|.+.| +.++|...|......+ +...+..|-..|... +++++|...|+... .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 5666666666677 7777777776553221 333334444555433 57777777777755 22 2223333
Q ss_pred HHHH-H--hcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 112 VLKS-C--TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 112 ll~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
+-.. + ...++.+.|...+....+.| +...+..|=..|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 3333 2 34677777777777776666 3334444444554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.058 Score=48.47 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=55.5
Q ss_pred HHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHH
Q 041894 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
.....|+++.|.++-+.+. +...|..+-..+.+.|+++.|.+.|..+.. |..+...+...|+.+....
T Consensus 661 ~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3455667777777666553 337788888888888888888888876532 4445555555666665555
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 128 ~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+-+.....| -++.-..+|.+.|++
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~ 752 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDI 752 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCH
Confidence 544444443 123334455556666
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.43 Score=38.44 Aligned_cols=148 Identities=9% Similarity=-0.043 Sum_probs=78.9
Q ss_pred HHHHHhCccccC--ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH----hhc---CCHHHHHHHHHhcC--CCCChhhHH
Q 041894 7 LINLLKNPVSIK--TKSQAKQLHAQIFKTLEPNSRFLISRLLFIY----NNF---NLVHDSLCLLDTLK--TPAPPVAWK 75 (219)
Q Consensus 7 ~~~ll~~~~~~~--~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~----~~~---g~~~~A~~~~~~m~--~~~~~~~~~ 75 (219)
|+.-=..+...+ +++++..+++.+.+.. +-+..+|+.--..+ .+. ++++++..+++.+- .|.|..+|+
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 333333344445 6777777777666554 22333343332222 333 56666666666653 222556666
Q ss_pred HHHHHHHhcCChh--HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC------hhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 76 SIIRCCTQNGLLV--ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD------FRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 76 ~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
---..+.+.|.++ +++++++.+.+.. .-|...|+---......+. ++++.+.+....... .-|...|+-+
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~ 226 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHH
Confidence 6655666666666 7777777766542 1133344443333334443 556666666665554 3456666666
Q ss_pred HHHHHhcCCc
Q 041894 148 MNMYAQSQNM 157 (219)
Q Consensus 148 l~~y~~~g~~ 157 (219)
-..+.+.|+.
T Consensus 227 ~~ll~~~~~~ 236 (306)
T 3dra_A 227 LGIHERFDRS 236 (306)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHhcCCC
Confidence 6666666664
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.042 Score=35.95 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
+...+..+-..|.+.|++++|...|+... .|.+..+|..+-.+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55667777778888888888888887754 33256778888888888888888888887754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.031 Score=47.45 Aligned_cols=60 Identities=10% Similarity=-0.031 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC---CC---CCC-cccHHHHHHHHhcccChhhHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS---GV---YPD-HNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~---~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
.+++.|-..|...|++++|..++++.++- -. .|+ ..+++.|-..|...|++++|+.++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 45666666666666666666666554321 11 222 23555556666666666666666555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.14 Score=37.30 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=12.3
Q ss_pred CccccCChhHHHHHHHHHHHc
Q 041894 13 NPVSIKTKSQAKQLHAQIFKT 33 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~ 33 (219)
.+.+.|+++.|...|++.++.
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhh
Confidence 344556666666666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.095 Score=38.14 Aligned_cols=93 Identities=10% Similarity=-0.094 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--------c-----ccHHHHHHHHhcccChhhHHHHHHHHHHh-----
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--------H-----NVFPSVLKSCTLLVDFRFGESVHACIIRL----- 135 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------~-----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----- 135 (219)
+...=..+.+.|++++|...|+.-.+- .|+ . ..|..+-.++.+.|++++|...++...+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344445556667777777777765432 222 1 16667777777788888888887776664
Q ss_pred CCCc-cHHHH----HHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 136 GVDL-DLYTN----NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 136 g~~~-~~~~~----~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+.| +...| ...=.++...|++ ++|.+-|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~------------------eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRG------------------AEAMPEFKKVV 129 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCH------------------HHHHHHHHHHH
Confidence 1234 45566 6777888889999 88888777644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.035 Score=47.08 Aligned_cols=88 Identities=14% Similarity=-0.035 Sum_probs=60.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC-------CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhHhC---CC---CCC-cc
Q 041894 45 LLFIYNNFNLVHDSLCLLDTLK-------TPAP---PVAWKSIIRCCTQNGLLVESLTCFVRMIGS---GV---YPD-HN 107 (219)
Q Consensus 45 ll~~~~~~g~~~~A~~~~~~m~-------~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~---~p~-~~ 107 (219)
.+..+.+.|++++|+.++++.- .+.+ ..+++.|...|...|++++|..++.+.+.- -. .|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667788888888876542 1201 356888888888888888888888876421 12 232 25
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHH
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
+++.|-..|...|++++|..++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6777788888888888888887763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.69 Score=37.21 Aligned_cols=138 Identities=10% Similarity=-0.016 Sum_probs=98.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhcC--CCCChhhHHHHHHHH----Hhc---
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN--LVHDSLCLLDTLK--TPAPPVAWKSIIRCC----TQN--- 84 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~--~~~~~~~~~~li~~~----~~~--- 84 (219)
+....++|..+++.+++.. +-+...|+.-=..+...+ ++++++.+++.+- .|.+..+|+---..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3344568999999998775 335556777777777777 9999999998865 332667777644444 445
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChh--hHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR--FGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
+++++++.+++.+.+.. +-|...|+----...+.|.++ .+.+.++.+.+... .|-..|+---.++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGG
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccc
Confidence 78999999999998642 225567766666667778887 88899999988763 466677665555666665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.88 Score=37.39 Aligned_cols=179 Identities=7% Similarity=-0.027 Sum_probs=117.9
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc-C-Ch
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN-G-LL 87 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~-g-~~ 87 (219)
...+....++|..+++.+++.. +-+..+|+.-=..+...+ .+++++.+++.+- .|.+..+|+---..+.+. + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 3344456678999999998775 335666777666666777 5999999998875 332677888877777766 6 88
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChh--------hHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR--------FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
++++++++.+.+.. +-|...|+----...+.|.++ .+.+..+.+.+.. ..|...|+---.++.+.++...
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999999987642 224556655444555555555 7888888888876 3567778877777777775100
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhh
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~ 205 (219)
....++++.+++++.. .+++...|+-+-.-+.+.|
T Consensus 220 -----------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 220 -----------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -----------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 0001177777777655 3432556665544444444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.07 E-value=0.69 Score=39.71 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=74.3
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHH-HHHHHhcC----------CCC-ChhhH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDS-LCLLDTLK----------TPA-PPVAW 74 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A-~~~~~~m~----------~~~-~~~~~ 74 (219)
|-..+.-+.+.|+.+.|..++++..+. +.+...|-. |+.....++. ..+.+... .+. ....|
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 333444445667788888888887777 333333322 2221111111 11111110 000 12456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH--HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP--SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
...+....+.++++.|..+|+.. +.. .++...|. +.+.... .++.+.|+.+++...+.-. .+...+...++...
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 66777666777889999999887 221 11222332 2222222 2368889999988766532 22334566677777
Q ss_pred hcCCch
Q 041894 153 QSQNMD 158 (219)
Q Consensus 153 ~~g~~~ 158 (219)
+.|+.+
T Consensus 366 ~~~~~~ 371 (493)
T 2uy1_A 366 RIGDEE 371 (493)
T ss_dssp HHTCHH
T ss_pred HcCCHH
Confidence 778873
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.046 Score=39.81 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=65.9
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCH----------HHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLV----------HDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~----------~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.+.+.++.|.+.++...+.. +.+...|..+=.++.+.+++ ++|+..|++.. .|.+..+|..+=.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34566788888888877765 44666666666666666554 57877777643 3426678888888887
Q ss_pred hcC-----------ChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 83 QNG-----------LLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 83 ~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
..| ++++|.+.|++-.+ +.|+...|...+..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 764 78888888877665 467766655544433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.17 Score=42.77 Aligned_cols=81 Identities=9% Similarity=-0.059 Sum_probs=62.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhC---CCCCCc----ccHHHHHHHHhcccChhhHHHHHHHHHH-----hCC-Cc-cHH
Q 041894 77 IIRCCTQNGLLVESLTCFVRMIGS---GVYPDH----NVFPSVLKSCTLLVDFRFGESVHACIIR-----LGV-DL-DLY 142 (219)
Q Consensus 77 li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~ 142 (219)
.+..+.+.|++++|..++++.++. -+.|+. .+++.+...|...|++++|..+++.... .|. .| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 356677789999999999987643 234443 5788899999999999999999887542 232 23 367
Q ss_pred HHHHHHHHHHhcCCc
Q 041894 143 TNNALMNMYAQSQNM 157 (219)
Q Consensus 143 ~~~~ll~~y~~~g~~ 157 (219)
+++.|-..|...|++
T Consensus 373 ~l~nLa~~~~~~g~~ 387 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMF 387 (429)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCCH
Confidence 788889999999999
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.13 Score=32.90 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=32.2
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCC-cc-cHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPD-HN-VFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
..+.+.|++++|...|++..+. .|+ .. .+..+-.++...|+++.|...++...+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445556666666666665543 233 23 45555556666666666666666665554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.49 Score=39.20 Aligned_cols=130 Identities=12% Similarity=0.045 Sum_probs=77.0
Q ss_pred ChhHHHHHHhCcccc-----CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----hcC----CH---HHHHHHHHhcC
Q 041894 3 STKTLINLLKNPVSI-----KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN----NFN----LV---HDSLCLLDTLK 66 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~-----~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~----~~g----~~---~~A~~~~~~m~ 66 (219)
+..+|...+.+.... .++.+|..+|++.++.. +-....|..+--+|. ... .. ..|.+....+.
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 345566666554322 23567888888887764 212333333332332 110 11 11222111111
Q ss_pred --CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 67 --TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 67 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.. +..+|.++-..+...|++++|...++..+... |+...|..+=..+.-.|+.++|.+.++...+..
T Consensus 272 ~~~~-~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 272 ELNN-LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GGTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33 66777777666666788888888888877654 777666666677778888888888888877765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.23 Score=42.11 Aligned_cols=74 Identities=16% Similarity=0.045 Sum_probs=57.5
Q ss_pred cCChhHHHHHHHHhHh---CCCCCCc----ccHHHHHHHHhcccChhhHHHHHHHHHH-----hCC-Cc-cHHHHHHHHH
Q 041894 84 NGLLVESLTCFVRMIG---SGVYPDH----NVFPSVLKSCTLLVDFRFGESVHACIIR-----LGV-DL-DLYTNNALMN 149 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~---~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~~~~~ll~ 149 (219)
.|++++|..++++.++ .-+-|+. .+++.+...|...|++++|..+++.... .|. .| ...+++.|=.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4788999999988553 3344543 6788999999999999999999888542 242 23 3677889999
Q ss_pred HHHhcCCc
Q 041894 150 MYAQSQNM 157 (219)
Q Consensus 150 ~y~~~g~~ 157 (219)
.|...|++
T Consensus 391 ~~~~qg~~ 398 (433)
T 3qww_A 391 LYMGLENK 398 (433)
T ss_dssp HHHHTTCH
T ss_pred HHHhccCH
Confidence 99999999
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.71 Score=32.00 Aligned_cols=86 Identities=10% Similarity=-0.143 Sum_probs=69.9
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----c
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----N 84 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~ 84 (219)
.+...+..+.|.++|.+..+.| +...+..|=..|.. .++.++|...|....+.++..++..|=..|.. .
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred HHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCC
Confidence 3455567888999999998886 55666667677777 89999999999887644478888888888888 8
Q ss_pred CChhHHHHHHHHhHhCC
Q 041894 85 GLLVESLTCFVRMIGSG 101 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g 101 (219)
+++++|...|+.-.+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 89999999999887766
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=1.3 Score=36.05 Aligned_cols=129 Identities=10% Similarity=-0.020 Sum_probs=72.7
Q ss_pred hHHHHHHhCccccC--ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC-HHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 5 KTLINLLKNPVSIK--TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL-VHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 5 ~~~~~ll~~~~~~~--~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
.+|+.--..+.+.+ .++.+..+++.+.+.. +.|.+.|+.---.+.+.|. .+++...++.+. .|.|..+|+-.-.
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 34444333344444 3677777777777765 4466677666666666666 467777776654 2326667766555
Q ss_pred HHHhc--------------CChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcc-----------cChhhHHHHHHHHH
Q 041894 80 CCTQN--------------GLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLL-----------VDFRFGESVHACII 133 (219)
Q Consensus 80 ~~~~~--------------g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~-----------g~~~~a~~~~~~m~ 133 (219)
.+.+. +.++++++.++..... .|+ ...|+-+-..+.+. +.++.+.+.+.++.
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 55444 3456777777765543 343 33443222222222 34566666666666
Q ss_pred HhC
Q 041894 134 RLG 136 (219)
Q Consensus 134 ~~g 136 (219)
+..
T Consensus 266 e~~ 268 (331)
T 3dss_A 266 ELE 268 (331)
T ss_dssp HHC
T ss_pred hhC
Confidence 654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=1.7 Score=38.00 Aligned_cols=134 Identities=9% Similarity=-0.084 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcC-ChhHHHHH
Q 041894 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN--LVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNG-LLVESLTC 93 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g-~~~~a~~~ 93 (219)
++++...++.+.+.. +-+..+|+.---.+.+.+ +++++...++.+- .. |..+|+---..+.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 899999999998876 447888888888888888 6799999999875 44 7889998888888888 89999999
Q ss_pred HHHhHhCCCCC-CcccHHHHHHHHhcc--------------cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 94 FVRMIGSGVYP-DHNVFPSVLKSCTLL--------------VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 94 ~~~m~~~g~~p-~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
++++.+. .| |...|+-.-..+.+. +.++++.+.+....... +-|...|+-+--.+.+.++.+
T Consensus 167 ~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 167 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHH--CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 9988764 34 445566554444442 55677888887777665 347788888888888877753
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.053 Score=34.87 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=24.1
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRF-LISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
.+.|+++.|...|+...+.. +.+.. .+..+=.+|.+.|++++|...|+..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555554432 22333 4444444555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=1.4 Score=38.59 Aligned_cols=180 Identities=9% Similarity=-0.030 Sum_probs=112.1
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC----------HHHHHHHHHhcC--CCCChhhHHHHHHHHHhcC-
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL----------VHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNG- 85 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g- 85 (219)
.-++|.+.++.+.+.. +-+..+|+.-=..+.+.|+ ++++...++.+- .|.+..+|+---..+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 3457788898888765 2245556554444555555 888999888765 3327788888778888888
Q ss_pred -ChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc-ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHH
Q 041894 86 -LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV-DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYD 163 (219)
Q Consensus 86 -~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~ 163 (219)
+++++++.++.+.+.. .-|...|+---....+.| ..+++.+.+..+.+.. ..|...|+-.-.++.+.+....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 6699999999998753 225566766666666777 7788888888877665 34666777766666553211000000
Q ss_pred HhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhh
Q 041894 164 RFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 164 ~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~ 205 (219)
-....+.++++.+++++.. .|++...|+-.-..+.+.+
T Consensus 201 ----~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 201 ----GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp ----CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ----ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 0001133377888777644 3432566766555554444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=93.01 E-value=0.68 Score=39.74 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCC--hhhHH--HHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAP--PVAWK--SIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKS 115 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~ 115 (219)
+|-..+...-+.+.++.|+.+|+....| + ...|- +.+.... .++++.|..+|+...+.. |+ ...+...++-
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 3444445444555566666666555322 2 11121 1222211 124555666665544321 22 1223334444
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
..+.|+.+.|+.+++.. ......|...++.=.+.|+.+.
T Consensus 364 e~~~~~~~~aR~l~er~-----~k~~~lw~~~~~fE~~~G~~~~ 402 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL-----EKTSRMWDSMIEYEFMVGSMEL 402 (493)
T ss_dssp HHHHTCHHHHHHHHHHS-----CCBHHHHHHHHHHHHHHSCHHH
T ss_pred HHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCHHH
Confidence 44555555555555554 1234455555555555555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=3.4 Score=33.83 Aligned_cols=150 Identities=9% Similarity=-0.058 Sum_probs=104.3
Q ss_pred hHHHHHHhCccccC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-C-CHHHHHHHHHhcCCC--CChhhHHHHHH
Q 041894 5 KTLINLLKNPVSIK-TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-N-LVHDSLCLLDTLKTP--APPVAWKSIIR 79 (219)
Q Consensus 5 ~~~~~ll~~~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~-g-~~~~A~~~~~~m~~~--~~~~~~~~li~ 79 (219)
.+|+.-=..+...+ .++++..+++.+.+.. +-+..+|+.---.+.+. + ++++++.+++.+-.. .|..+|+---.
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~w 167 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHW 167 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34555444445556 5999999999999776 44777888777777666 6 889999999988643 26667776555
Q ss_pred HHHhcCChh--------HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC-------hhhHHHHHHHHHHhCCCccHHHH
Q 041894 80 CCTQNGLLV--------ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD-------FRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 80 ~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
.+.+.|.++ +++++++++.+.. .-|...|+---....+.+. ++++.+......... .-|...|
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW 245 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAW 245 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 555555555 8999999988753 2255567766666666665 567777777777665 4577888
Q ss_pred HHHHHHHHhcCCc
Q 041894 145 NALMNMYAQSQNM 157 (219)
Q Consensus 145 ~~ll~~y~~~g~~ 157 (219)
+-+-..+.+.|+.
T Consensus 246 ~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 246 NYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC
Confidence 8877777776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.59 E-value=0.49 Score=34.28 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=72.0
Q ss_pred hhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHhHhCCCCCCc-ccHHHHHHHH
Q 041894 50 NNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL----------VESLTCFVRMIGSGVYPDH-NVFPSVLKSC 116 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~ 116 (219)
.+.+.+++|...++... .|.+...|+.+=.++...+++ ++|...|++-.+ +.|+. ..|..+=.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 34566788888887654 343778888777788877665 589999988765 45754 5788888888
Q ss_pred hccc-----------ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 117 TLLV-----------DFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 117 ~~~g-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
...| ++++|.+.|+...+. .|+...|...+...-
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 8764 899999999988775 476666666555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=5.3 Score=32.43 Aligned_cols=131 Identities=8% Similarity=-0.066 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCC-hhHHHHH
Q 041894 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN--LVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGL-LVESLTC 93 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~-~~~a~~~ 93 (219)
++.+..+++.+.+.. +-+..+|+.---.+.+.+ .++++..+++.+- .. |..+|+---..+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678888888888765 447788888777777777 4889999998875 44 78888888888888888 5899999
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhcc--------------cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 94 FVRMIGSGVYPDHNVFPSVLKSCTLL--------------VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
++.+.+.. .-|...|+-.-....+. +.++.+.+.+....... +-|...|+-+--.+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99988753 22444555544444333 45677777777776665 34677777554444444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.09 E-value=3.5 Score=30.32 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 51 NFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 51 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
..|+++.|.++-+++. +...|..|=+.....|+++-|.+.|..
T Consensus 17 ~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444444444444442 224455555555555555555444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.99 E-value=2.1 Score=27.59 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHhhcCC---HHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 041894 37 NSRFLISRLLFIYNNFNL---VHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 100 (219)
.|...+..+-.++...++ .++|..+|++.- .|.++.+...+=..+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344445554444433332 577777776643 3325666666667777788888888888887765
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.88 E-value=2.5 Score=28.18 Aligned_cols=85 Identities=16% Similarity=0.068 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
..++|..+-+.+...+- ...+--+-+..+.+.|++++|..+.+.+..| |.+.|-+|-. .+.|..+++..-+.++-
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~p-dlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYP-DLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCG-GGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCc-hHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 56677777777776664 3333334445677788888888888888888 8888877754 45566777776666666
Q ss_pred hCCCCCCcccH
Q 041894 99 GSGVYPDHNVF 109 (219)
Q Consensus 99 ~~g~~p~~~t~ 109 (219)
.+| .|-...|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 3433333
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.41 E-value=2.3 Score=28.25 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
..++|..+-+.+...+- ...+--+-+..+.+.|++++|..+.+.+..| |.+.|-+|-. .+.|..+++..-+.++-
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~p-dlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWP-ALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCG-GGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCc-hHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 45677777777766653 2333333444667778888888887777777 8877777644 45666677666666666
Q ss_pred hCC
Q 041894 99 GSG 101 (219)
Q Consensus 99 ~~g 101 (219)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 655
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.24 E-value=0.67 Score=33.33 Aligned_cols=86 Identities=8% Similarity=-0.059 Sum_probs=49.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCCh
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN---LVHDSLCLLDTLKTPAP-----PVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~~~-----~~~~~~li~~~~~~g~~ 87 (219)
....+..+++-|....+.|. ++..+.-.+--++++.+ +++++..+|.+.-.. + ...+=.+=-+|.+.|++
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCccchHHHHHHHHHHHHHccCH
Confidence 33445566666666655553 56666666666666766 555777777665422 2 11222223344667777
Q ss_pred hHHHHHHHHhHhCCCCCC
Q 041894 88 VESLTCFVRMIGSGVYPD 105 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~ 105 (219)
++|.++++..++ +.|+
T Consensus 88 ~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 88 EKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHh--cCCC
Confidence 777777777665 3564
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.13 E-value=3.1 Score=29.56 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=81.1
Q ss_pred cCChhHHHHHHHHHHHcCCC--CcHHHHHHHHHH------------H------hhcCCHHHHHHHHHhcCCCCChhhHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEP--NSRFLISRLLFI------------Y------NNFNLVHDSLCLLDTLKTPAPPVAWKS 76 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~--~~~~~~~~ll~~------------~------~~~g~~~~A~~~~~~m~~~~~~~~~~~ 76 (219)
.|..+++.++.....++.-. .|=+..| +|++ - ..+++++....-+-.+.. +..-.+.
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICN-iiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~--~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICN-LLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT--LNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHH-HHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC--CCHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeee-cchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc--hHHHHHH
Confidence 46777888888877766411 1111222 2221 1 335566666655555533 5566788
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC
Q 041894 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138 (219)
Q Consensus 77 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 138 (219)
.++.....|.-++-.+++.++..+ .+|+....-.+-++|.+.|+.+++.+++.+.=+.|++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 889999999999999999886543 4677778888899999999999999999888888864
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.82 E-value=0.93 Score=30.26 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=35.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
..+-+..+..-.+.|+..+..+.|++|.+.+++..|.++++-++.. ..+...+|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3334444445566777777777777777777777777777765432 2233445666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=0.91 Score=37.70 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 041894 46 LFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 46 l~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 97 (219)
+..+...|++++|...+..+. .|-+...|-.+|.++.+.|+..+|++.|+..
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555555554444332 2214445555555555555555555555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=1.7 Score=34.78 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcC--CCCC---hhhHHHHHHHHHhc-----CChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHhcc-cC
Q 041894 55 VHDSLCLLDTLK--TPAP---PVAWKSIIRCCTQN-----GLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLL-VD 121 (219)
Q Consensus 55 ~~~A~~~~~~m~--~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~-g~ 121 (219)
+..|...+++.. .| + -.+|..+-.-|.+. |+.++|.+.|++-++ +.|+ ..++...-..+++. |+
T Consensus 179 l~~A~a~lerAleLDP-~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLWP-SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhCC-CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCC
Confidence 455555555543 34 3 45889999999994 999999999999776 4673 67788888889885 99
Q ss_pred hhhHHHHHHHHHHhCCC--ccHHHHHHHH
Q 041894 122 FRFGESVHACIIRLGVD--LDLYTNNALM 148 (219)
Q Consensus 122 ~~~a~~~~~~m~~~g~~--~~~~~~~~ll 148 (219)
.+.+.+.++...+.... |+....|.+-
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 99999999999888776 7766665543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.86 E-value=4.8 Score=28.60 Aligned_cols=128 Identities=6% Similarity=-0.030 Sum_probs=87.6
Q ss_pred HHHHHH--HhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-C----------------CC
Q 041894 43 SRLLFI--YNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-G----------------VY 103 (219)
Q Consensus 43 ~~ll~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g----------------~~ 103 (219)
..||.+ ..-.|.+++..++..+...+.+..-||=+|-.....-+-+-.+++++..-+- . ..
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n 88 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN 88 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc
Confidence 344443 3446888888999888764326666777777777766777777777665321 1 13
Q ss_pred CCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhh
Q 041894 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183 (219)
Q Consensus 104 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 183 (219)
-+...+...|+.....|.-++-..+...+..+ -+|+....-.+-.+|.+.|+. .+|.+++.
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~------------------r~a~eLl~ 149 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDE------------------RDATTLLI 149 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCH------------------HHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcch------------------hhHHHHHH
Confidence 34445666777777888888888888875443 356777788888999999999 88888887
Q ss_pred cCCCCC
Q 041894 184 KIPERN 189 (219)
Q Consensus 184 ~m~~~~ 189 (219)
+-.++.
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 766553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=88.39 E-value=3.6 Score=26.46 Aligned_cols=63 Identities=10% Similarity=-0.047 Sum_probs=46.2
Q ss_pred ChhHHHHHHhCccccCC---hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 3 STKTLINLLKNPVSIKT---KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~---~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
|+..+..+-.++...++ .+.|..++++..+.. +-+......+=..+.+.|++++|...|..+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444443333 789999999999876 4466666777778999999999999999875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=88.36 E-value=2.7 Score=37.50 Aligned_cols=82 Identities=7% Similarity=-0.099 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
.+...|..+-..+.+.++++.|++.|..+.. |..+..-+...|+.+...++-+.....| -++....+|
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~ 746 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAY 746 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHH
Confidence 4678999999999999999999999998753 2333444444555555444333333322 223333444
Q ss_pred hcccChhhHHHHHH
Q 041894 117 TLLVDFRFGESVHA 130 (219)
Q Consensus 117 ~~~g~~~~a~~~~~ 130 (219)
.+.|++++|.+++.
T Consensus 747 ~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 747 WIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44455555544443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.36 E-value=1.7 Score=31.24 Aligned_cols=80 Identities=10% Similarity=-0.065 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc---ChhhHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhcCCchhHH
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV---DFRFGESVHACIIRLGVDL--DLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
+..+.+-|.+..+.+- ++..+--.+-.+++++. +.+++..+++.+.+.. .| +...+--|=-+|.+.|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y---- 87 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY---- 87 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCH----
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCH----
Confidence 3445555555555443 45444444455666666 6667888888877765 23 122222334455788888
Q ss_pred HHHhhhhccCCcchhhHHHHhhcCC
Q 041894 162 YDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 162 ~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++|+++++...
T Consensus 88 --------------~~A~~y~~~lL 98 (152)
T 1pc2_A 88 --------------EKALKYVRGLL 98 (152)
T ss_dssp --------------HHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH
Confidence 88888888766
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=88.28 E-value=5.1 Score=33.12 Aligned_cols=133 Identities=9% Similarity=-0.052 Sum_probs=84.6
Q ss_pred CCCCcHHHHHHHHHHHhh--cC---CHHHHHHHHHhcC--CCCChhhHHHHHHHHHh---cC-Ch-hHHHHHHHHhH---
Q 041894 34 LEPNSRFLISRLLFIYNN--FN---LVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ---NG-LL-VESLTCFVRMI--- 98 (219)
Q Consensus 34 g~~~~~~~~~~ll~~~~~--~g---~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~---~g-~~-~~a~~~~~~m~--- 98 (219)
+.+.+...|...+.+... .+ +..+|..+|++.. .|.....|..+--+|.- .+ .. .....+-..+.
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 346677788888876543 23 3578999998865 55233455543333321 11 11 11111111121
Q ss_pred hC-CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhh
Q 041894 99 GS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREAS 177 (219)
Q Consensus 99 ~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~ 177 (219)
.. .-..+..+|.++--.+...|+++.|...++...... |+...|..+=..+.-.|++ ++
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~------------------~e 328 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMN------------------RE 328 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCH------------------HH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCH------------------HH
Confidence 11 124456677777666677799999999999998886 7777777777888999999 88
Q ss_pred HHHHhhcCC
Q 041894 178 VHEVLDKIP 186 (219)
Q Consensus 178 a~~l~~~m~ 186 (219)
|.+.|++-.
T Consensus 329 A~e~~~~Al 337 (372)
T 3ly7_A 329 AADAYLTAF 337 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887655
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=88.27 E-value=3.9 Score=30.35 Aligned_cols=183 Identities=10% Similarity=0.001 Sum_probs=97.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcC
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL--ISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNG 85 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g 85 (219)
.|...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+-+..+++.=..+ .|..-++. +...+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcC
Confidence 44555677999999989888887776554321 224455566778887777776642222 02222333 33444567
Q ss_pred ChhHHHHHHHHhHhCCCCCC---cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH---HHHHHHHHHHhcCCchh
Q 041894 86 LLVESLTCFVRMIGSGVYPD---HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY---TNNALMNMYAQSQNMDM 159 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~y~~~g~~~~ 159 (219)
+.+-...+++.....++.++ ..-.+.+ ...+..|.. ++++.+.+.|..++.. ...+.+..-++.|+.
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~-- 163 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-- 163 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH--
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH--
Confidence 77766555544332222332 2233333 344455665 4455566677665532 233455566677777
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCCCCC--eeehhHHHHHHhhhh-----HhHHHcCCCCCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPERNG--NVELSSGLAGCNKFE-----KRVVSAGHDADL 217 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~--~~~~n~ll~~~~~~~-----~~m~~~g~~pd~ 217 (219)
+-+.-+++.-...+. ..-++.+-.+ ++.| +.+.+.|..|+.
T Consensus 164 ----------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 164 ----------------SMVQLLLQHGANVNAQMYSGSSALHSA-SGRGLLPLVRTLVRSGADSSL 211 (241)
T ss_dssp ----------------HHHHHHHHTTCCTTCBCTTSCBHHHHH-HHHTCHHHHHHHHHTTCCTTC
T ss_pred ----------------HHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCCHHHHHHHHhcCCCCCC
Confidence 777777765332220 2223333333 3333 345666766654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=87.49 E-value=2.4 Score=27.62 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=25.7
Q ss_pred hCccccCChhHHHHHHHHHHHcC------CCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTL------EPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
..+.+.+++..|...|....+.- -.+...++..|-.+|.+.|+++.|...+++
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34445566666666665554431 012334444444555555555555555444
|
| >2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A | Back alignment and structure |
|---|
Probab=87.49 E-value=3 Score=28.83 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHhHhCCCCCCc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAP---PVAWKSIIRCCTQNGL--LVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 106 (219)
...+|.-|...|+.++|.+.++++..| . .++..++..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 577899999999999999999999866 4 3556666677776542 46778888888877655444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.99 E-value=3 Score=34.49 Aligned_cols=72 Identities=7% Similarity=-0.059 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHH-----HhCCCccHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-----RLGVDLDLYTNNA 146 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~~~~ 146 (219)
...++.++...|+++++...+....... +.++..|..+|.++.+.|+..+|.+.++... +.|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3446777888999999999888876542 4477899999999999999999999988854 4599998655443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.94 E-value=3.4 Score=27.53 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=13.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
++....+.+++|.+.+++.-|.++|+.
T Consensus 44 ~P~ii~aaLrAcRRvND~alAVR~lE~ 70 (109)
T 1v54_E 44 EPKIIDAALRACRRLNDFASAVRILEV 70 (109)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444455555555555555555555533
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=84.39 E-value=6.2 Score=25.53 Aligned_cols=57 Identities=9% Similarity=-0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC----C-----CCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK----T-----PAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~----~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
+-.|=..+.+.++++.|...|+... . ......+..+-.++.+.|++++|..++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3344444555555555555554321 0 0012344455555555555555555555544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.25 E-value=2.6 Score=29.67 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
..+-++.+..-.+.|+..+..+.|++|-+.+|+..|.++++-++.. ..+...+|..+|+-
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 3344445556678899999999999999999999999998877533 23445577776643
|
| >2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A | Back alignment and structure |
|---|
Probab=83.88 E-value=3 Score=29.79 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHhHhCCCCCCc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAP---PVAWKSIIRCCTQNGL--LVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 106 (219)
..+.+|.-|...|+.++|.+.++++..| . .++..++..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3578899999999999999999999866 4 3556666677776433 45677888888877655444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.55 E-value=16 Score=33.09 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCC-HHHHHHHHHhcCCCCCh--hh-H-HHHHHHHHhcC-ChhHHHHHHHHhHhC------CCCCCcccH
Q 041894 42 ISRLLFIYNNFNL-VHDSLCLLDTLKTPAPP--VA-W-KSIIRCCTQNG-LLVESLTCFVRMIGS------GVYPDHNVF 109 (219)
Q Consensus 42 ~~~ll~~~~~~g~-~~~A~~~~~~m~~~~~~--~~-~-~~li~~~~~~g-~~~~a~~~~~~m~~~------g~~p~~~t~ 109 (219)
...|+..+...++ ++.|..+|+++... +. .+ + .++|..+.+.+ +--+|.+++.+-.+. ...+.....
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~-~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK-DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 4555666666666 68899999988643 32 11 2 23333333222 233455555554321 223322111
Q ss_pred -------HHH----HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhH
Q 041894 110 -------PSV----LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178 (219)
Q Consensus 110 -------~~l----l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a 178 (219)
..| .+-|...|+++.|..+-..-+..- +.+..+|..|..+|...|++ +.|
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~------------------e~A 390 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEY------------------EKA 390 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH------------------HHH
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccH------------------HHH
Confidence 112 234567799999999988877764 46799999999999999999 666
Q ss_pred HHHhhcCC
Q 041894 179 HEVLDKIP 186 (219)
Q Consensus 179 ~~l~~~m~ 186 (219)
+=.+..|+
T Consensus 391 LLtLNScP 398 (754)
T 4gns_B 391 LFAINSMP 398 (754)
T ss_dssp HHHHHHSC
T ss_pred HHHHhcCC
Confidence 66666664
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.35 E-value=12 Score=27.34 Aligned_cols=98 Identities=11% Similarity=-0.056 Sum_probs=70.9
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
+.|+++.|.++-..+ .+...|..|=....+.|+++-|++.|..... +..+.--|...|+.++-.++-+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------HHHHHHHHHHhCCHHHHHHHHH
Confidence 568999999887665 3688999999999999999999999997643 4445555556677766543333
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHH
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
.-...| -++.....+-..|+++++.+++..
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222333 466777777788898888887643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=80.99 E-value=13 Score=26.68 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=13.9
Q ss_pred ChhhHHHHHHHHHhcCCh------hHHHHHHHHh
Q 041894 70 PPVAWKSIIRCCTQNGLL------VESLTCFVRM 97 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m 97 (219)
|..+|=..|.-.-+.|++ ++..++|+.-
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerA 45 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQA 45 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHH
Confidence 444555555555555555 4444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 219 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.05 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.77 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.7 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.61 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.35 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.31 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.06 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.87 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.83 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.76 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.67 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.61 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.4 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.16 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 96.79 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.77 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.72 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.5 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.47 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.41 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.29 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.17 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 95.98 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 95.78 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.45 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.76 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 93.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 91.78 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.98 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 88.93 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 88.81 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.69 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 86.19 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 85.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 84.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 83.65 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.8 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=4.7e-09 Score=83.74 Aligned_cols=194 Identities=11% Similarity=0.009 Sum_probs=123.9
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCC 81 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~ 81 (219)
.++..+-..+...++++.|...+....+.. +-+...|..+-..+...|++++|...+.... .. +...+..+-..+
T Consensus 170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 247 (388)
T d1w3ba_ 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHH
Confidence 445555566667777777777777776653 3345567777777777777777777776654 33 556666777777
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
.+.|++++|...|++..+. .|+ ..+|..+-..+...|+.++|...+....... +.+...+..+...|.+.|+++.|
T Consensus 248 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 324 (388)
T d1w3ba_ 248 YEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHH
Confidence 7777777777777776553 343 3466667777777777777777777765554 45566777777777777777555
Q ss_pred H--HHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhh
Q 041894 161 I--YDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNK 203 (219)
Q Consensus 161 ~--~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~ 203 (219)
+ |+. +...+.+.|+.++|.+.|++..+ |+....|..+-..|.+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2 222 22223456666888888876543 3213345544444433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=5.3e-08 Score=77.42 Aligned_cols=197 Identities=12% Similarity=0.017 Sum_probs=151.3
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
...........+....+...+....... +.+...+..+-..+...|+.++|...+.... .|.+..+|..+-..+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 216 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred cccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhcc
Confidence 3444445566677778877777776554 4456778888889999999999999998653 342678899999999999
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HH
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IY 162 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~ 162 (219)
|++++|...|....... ..+...+..+-..+.+.|+++.|...++...+.. +.+..++..+-.+|.+.|+++.+ .|
T Consensus 217 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~ 294 (388)
T d1w3ba_ 217 RIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999987643 3345677778889999999999999999987764 34567888999999999999887 23
Q ss_pred HH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 163 DR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 163 ~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
+. +.....+.|+.++|.+.|++..+ |+....|..+-..|.+.|+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 354 (388)
T d1w3ba_ 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred HhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 32 33334689999999999998664 3325567777777877774
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=3.8e-07 Score=71.73 Aligned_cols=191 Identities=12% Similarity=0.010 Sum_probs=125.4
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
.+.+.|+++.|...|+.+++.. +-+..+|..+-..|...|++++|...|.... .|.+...|..+...|...|++++|
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 106 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 106 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3568899999999999998765 3467788888899999999999999998754 342678888889999999999999
Q ss_pred HHHHHHhHhCCCCCCccc----------------HHHHHHHHhcccChhhHHHHHHHHHHhCC-CccHHHHHHHHHHHHh
Q 041894 91 LTCFVRMIGSGVYPDHNV----------------FPSVLKSCTLLVDFRFGESVHACIIRLGV-DLDLYTNNALMNMYAQ 153 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t----------------~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~y~~ 153 (219)
.+.+.+.... .|+... ....+..+...+....+...+....+... .++..++..+-..+.+
T Consensus 107 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 184 (323)
T d1fcha_ 107 CEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184 (323)
T ss_dssp HHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred ccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 9999887543 121100 11112222333455556666655544432 2345566666667777
Q ss_pred cCCchhHH--HHH--------------hhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhhH
Q 041894 154 SQNMDMHI--YDR--------------FQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 154 ~g~~~~~~--~~~--------------~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+++.++ |+. +...+.+.|+.++|.+.|++.. .++....|..+-..|.+.|+
T Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 185 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 255 (323)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC
Confidence 77776652 222 2233346777788888888655 23325566667677766663
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=7.2e-07 Score=70.06 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=52.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
..+|..+-.++.+.|+++.|...|.+..+.. +-+...|..+...|...|++++|.+.+...
T Consensus 53 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 113 (323)
T d1fcha_ 53 MEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDW 113 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccchhhH
Confidence 5678888889999999999999999998765 336778888889999999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=8.3e-07 Score=69.99 Aligned_cols=140 Identities=7% Similarity=-0.029 Sum_probs=103.0
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP-PVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
..+.+..+|++..+...+.+...|......+-+.|+.+.|..+|+.+. .|.+ ..+|...+....+.|++++|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 356778888888876555667788888889999999999999998763 2213 3478999999999999999999999
Q ss_pred HhHhCCCCCCcccHHHHHH-HHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 96 RMIGSGVYPDHNVFPSVLK-SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
..++.+ +.+...|..... -+...|+.+.|..+++...+.. +.+...|...++.+.+.|+++++
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~a 222 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHH
Confidence 887654 222333333222 2234578899999999887763 45577889999999999999544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=1.6e-05 Score=62.39 Aligned_cols=163 Identities=4% Similarity=-0.046 Sum_probs=123.1
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHH-HH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIR-CC 81 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~-~~ 81 (219)
..|........+.|+++.|..+|+.+++........+|...+....+.|+++.|+++|..... |.+...|..... -+
T Consensus 100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~ 179 (308)
T d2onda1 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345555666678899999999999998765444456799999999999999999999988652 213333433332 23
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC-CCcc--HHHHHHHHHHHHhcCCch
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLD--LYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~ll~~y~~~g~~~ 158 (219)
...|+.+.|..+|+...+. .+-+...|...++...+.|+.+.|+.+|+...+.. ..|+ ...|...+..-.+.|+.
T Consensus 180 ~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~- 257 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL- 257 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH-
T ss_pred HhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH-
Confidence 4468999999999998865 23345688999999999999999999999976653 4554 45788888887888888
Q ss_pred hHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 159 MHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+.+.++++++.
T Consensus 258 -----------------~~~~~~~~r~~ 268 (308)
T d2onda1 258 -----------------ASILKVEKRRF 268 (308)
T ss_dssp -----------------HHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHH
Confidence 88888877654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1e-05 Score=63.95 Aligned_cols=149 Identities=5% Similarity=-0.049 Sum_probs=119.1
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..|+.+=..+.+.+.+++|..+++.+++.. +-+...|+..-..+...| ++++|...++... .|.+..+|+.+-..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 345555556677889999999999999875 446667788777877766 5999999998764 342789999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.+.|++++|...|..+.+. .| +...|..+-..+.+.|+++.|...++...+.. +.+...|+.+-.++.+.+..
T Consensus 123 ~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc
Confidence 9999999999999998864 45 46788889999999999999999999998876 34566777766666666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=0.00016 Score=54.22 Aligned_cols=192 Identities=11% Similarity=-0.012 Sum_probs=109.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
+|..+=..+.+.|+++.|...|.+.++.. +-+..+|+.+=.+|.+.|++++|...|+... .|.+..+|..+-..|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 33334456677888888888888887764 4466778888888888888888888887764 33256678888888888
Q ss_pred cCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC----ch
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN----MD 158 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~----~~ 158 (219)
.|++++|...|+...+. .|+. .....+--++.+.+..+....+........ ++...++. +..+...-. .+
T Consensus 118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhhH-HHHHHHHHHHHHHHH
Confidence 88888888888876653 3432 222222223333344433444444333322 22222222 222221111 11
Q ss_pred hH----------------HHHHhhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHhh
Q 041894 159 MH----------------IYDRFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCNK 203 (219)
Q Consensus 159 ~~----------------~~~~~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~~ 203 (219)
.+ .|..+.....+.|+.++|.+.|++....+ +.+.|..-+..+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~a~~~L~~ 255 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 255 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 11 01113334457899999999999866433 13344444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=9.4e-05 Score=53.42 Aligned_cols=97 Identities=10% Similarity=0.005 Sum_probs=81.2
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
|+...+...=..+.+.|+++.|...|...++.. +.+...|+.+=.+|.+.|++++|...|.... .|.+..+|..+-.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 555555555567889999999999999988875 5577889999999999999999999998875 3426788999999
Q ss_pred HHHhcCChhHHHHHHHHhHh
Q 041894 80 CCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~ 99 (219)
+|.+.|++++|...|+...+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00018 Score=52.41 Aligned_cols=119 Identities=13% Similarity=0.027 Sum_probs=77.2
Q ss_pred HHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHH
Q 041894 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGE 126 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 126 (219)
.+...|++++|.+.|.++..+ +..+|..+=..|...|++++|.+.|++-++. .|+ ...|..+-.+|.+.|++++|.
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~-~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHHH
Confidence 345667777777777777666 7677777777777777777777777775542 343 345666666667777777777
Q ss_pred HHHHHHHHh------------CCC--c-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 127 SVHACIIRL------------GVD--L-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 127 ~~~~~m~~~------------g~~--~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
..|+..... |+. + ...++..+-.+|.+.|++ ++|.+.|++...
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~------------------~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW------------------KKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHT
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH------------------HHHHHHHHHHHh
Confidence 776665432 111 1 123444556678888888 888888886553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=0.00027 Score=55.42 Aligned_cols=147 Identities=9% Similarity=-0.015 Sum_probs=109.7
Q ss_pred hhHHHHHHhCccccC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 4 TKTLINLLKNPVSIK-TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
..+|+..-.++.+.+ +++.|...++...+.. +-+..+|..+-..+.+.|++++|...++... .|.+..+|+.+-..
T Consensus 77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~ 155 (315)
T d2h6fa1 77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 155 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHH
Confidence 456666666666666 5899999999998876 4478889999999999999999999998875 33278999999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcc------cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLL------VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
+.+.|++++|.+.|+...+. .|+ ...|+.+-..+.+. +.++.|...+....+.. +.+...|+-+-..+..
T Consensus 156 ~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~ 232 (315)
T d2h6fa1 156 IQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD 232 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh
Confidence 99999999999999998874 454 34555444443333 34667777777777765 3456667666555544
Q ss_pred c
Q 041894 154 S 154 (219)
Q Consensus 154 ~ 154 (219)
.
T Consensus 233 ~ 233 (315)
T d2h6fa1 233 R 233 (315)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00043 Score=50.33 Aligned_cols=135 Identities=7% Similarity=-0.070 Sum_probs=101.1
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
.+...|+++.|.+.|.++ .+|+..+|..+=..|.+.|++++|++.|++.. .|.+...|..+=.+|.+.|++++|
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 346789999999998764 36778888888889999999999999998754 332778999999999999999999
Q ss_pred HHHHHHhHhCC------------CCCC---cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 91 LTCFVRMIGSG------------VYPD---HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 91 ~~~~~~m~~~g------------~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
.+.|+.-.... .... ..++..+-.++.+.|+++.|.+.+....+....+........|..+
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~ 165 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 165 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 99998865321 1111 1234455667889999999999998877776665444444334433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.00067 Score=50.59 Aligned_cols=138 Identities=10% Similarity=-0.005 Sum_probs=99.8
Q ss_pred cCChhHHHHHHHHHHHcCC-CC--cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLE-PN--SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~-~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..+.+.+..-+++.....- .+ ...+|..+=..|.+.|++++|...|+..- .|.+..+|+.+=.+|.+.|++++|.
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 3345566666677765432 22 22355566678999999999999998754 3437899999999999999999999
Q ss_pred HHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 92 TCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 92 ~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
..|++..+. .|+ ..++..+-..+...|+++.|...++...+... .+......+-.++.+.+..
T Consensus 92 ~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~ 155 (259)
T d1xnfa_ 92 EAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEK 155 (259)
T ss_dssp HHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHH
T ss_pred hhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhH
Confidence 999998764 454 45777888889999999999999999887653 2333333334444444444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00025 Score=47.23 Aligned_cols=85 Identities=12% Similarity=-0.013 Sum_probs=46.7
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
+.+.|+++.|...|.+.++.. +-+...|..+=.+|.+.|++++|...+.... .|.+...|..+-.++...|++++|.
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~ 91 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK 91 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHH
Confidence 344556666666666655543 3344555555555666666666666555432 2215555555556666666666666
Q ss_pred HHHHHhHh
Q 041894 92 TCFVRMIG 99 (219)
Q Consensus 92 ~~~~~m~~ 99 (219)
..|+.-.+
T Consensus 92 ~~~~~a~~ 99 (117)
T d1elwa_ 92 RTYEEGLK 99 (117)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66655543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00015 Score=50.98 Aligned_cols=87 Identities=10% Similarity=0.011 Sum_probs=46.8
Q ss_pred HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~ 124 (219)
.|.+.|++++|...|.+.. .|.+...|..+-.+|...|++++|...|+..++- .|+. ..|..+..++...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHcCCHHH
Confidence 3445556666665555433 2214555555556666666666666666555432 2332 455555555566666666
Q ss_pred HHHHHHHHHHhC
Q 041894 125 GESVHACIIRLG 136 (219)
Q Consensus 125 a~~~~~~m~~~g 136 (219)
|...++...+..
T Consensus 97 A~~~~~~a~~~~ 108 (159)
T d1a17a_ 97 ALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC
Confidence 666655555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00032 Score=49.12 Aligned_cols=93 Identities=10% Similarity=0.022 Sum_probs=79.8
Q ss_pred hCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhH
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
..+.+.|+++.|...|.+.++.. +-+...|..+-.+|.+.|++++|...|+... .|.+..+|..+..++...|++++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence 35778999999999999999886 5578889999999999999999999998764 34277899999999999999999
Q ss_pred HHHHHHHhHhCCCCCCcc
Q 041894 90 SLTCFVRMIGSGVYPDHN 107 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~~ 107 (219)
|...|++..+. .|+..
T Consensus 97 A~~~~~~a~~~--~p~~~ 112 (159)
T d1a17a_ 97 ALRDYETVVKV--KPHDK 112 (159)
T ss_dssp HHHHHHHHHHH--STTCH
T ss_pred HHHHHHHHHHc--CCCCH
Confidence 99999998764 46543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.62 E-value=0.00071 Score=52.08 Aligned_cols=130 Identities=6% Similarity=-0.098 Sum_probs=68.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC----hh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL-----EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP----PV 72 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-----~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~----~~ 72 (219)
.|...-..|...++++.|...|.+..+.. -..-..+|..+-.+|.+.|++++|...++... ..++ ..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 34445555566666666666666654431 12246666666666666666666666665432 1101 23
Q ss_pred hHHHHHHHHHh-cCChhHHHHHHHHhHh----CCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 73 AWKSIIRCCTQ-NGLLVESLTCFVRMIG----SGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 73 ~~~~li~~~~~-~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
++..+...|.. .|++++|.+.|....+ .+-.+. ..+|..+...+...|+++.|...++...+.
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 34444444433 4666666666655431 221221 234555566666666666666666665544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.61 E-value=0.00015 Score=48.06 Aligned_cols=81 Identities=9% Similarity=0.033 Sum_probs=38.8
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~ 92 (219)
.+.|+++.|...|++.++.. +-+...|..+=..|.+.|++++|+..|+... .|.+..+|..+-..|...|++++|.+
T Consensus 27 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~ 105 (112)
T d1hxia_ 27 LKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA 105 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHH
Confidence 34455555555555554443 2234444444445555555555555554432 22134445555555555555555555
Q ss_pred HHHH
Q 041894 93 CFVR 96 (219)
Q Consensus 93 ~~~~ 96 (219)
.|++
T Consensus 106 ~l~~ 109 (112)
T d1hxia_ 106 SLRA 109 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00054 Score=45.52 Aligned_cols=89 Identities=8% Similarity=-0.028 Sum_probs=74.8
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhh
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 124 (219)
..+.+.|++++|...|++.. .|.+...|..+=.+|.+.|++++|...|....+.. +.+...|..+-.++...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 45678899999999998864 34378889999999999999999999999987643 3456788888999999999999
Q ss_pred HHHHHHHHHHhC
Q 041894 125 GESVHACIIRLG 136 (219)
Q Consensus 125 a~~~~~~m~~~g 136 (219)
|...++...+..
T Consensus 90 A~~~~~~a~~~~ 101 (117)
T d1elwa_ 90 AKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC
Confidence 999999987654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.50 E-value=0.00049 Score=53.00 Aligned_cols=156 Identities=11% Similarity=-0.012 Sum_probs=109.7
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC----hhhHHHHHHHHHhcCChh
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP----PVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~----~~~~~~li~~~~~~g~~~ 88 (219)
++++.|..+|.++ -..|-..|++++|.+.|.+.. .. + ..+|+.+-.+|.+.|+++
T Consensus 31 ~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~-~~~~~a~~~~~~g~~y~~~~~~~ 94 (290)
T d1qqea_ 31 YKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSV 94 (290)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCCcH
Confidence 3567777766654 457888999999999987653 12 2 367899999999999999
Q ss_pred HHHHHHHHhHh----CCC-CCCcccHHHHHHHHh-cccChhhHHHHHHHHHHh----CCCc-cHHHHHHHHHHHHhcCCc
Q 041894 89 ESLTCFVRMIG----SGV-YPDHNVFPSVLKSCT-LLVDFRFGESVHACIIRL----GVDL-DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 89 ~a~~~~~~m~~----~g~-~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~y~~~g~~ 157 (219)
+|.+.|+...+ .|- .....++..+...|- ..|+++.|...+....+. +-.+ -..++..+-..|.+.|++
T Consensus 95 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y 174 (290)
T d1qqea_ 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChH
Confidence 99999997542 221 112456666666674 569999999998875432 2122 245678889999999999
Q ss_pred hhH--HHHHhhhh---------------------ccCCcchhhHHHHhhcCCCCC
Q 041894 158 DMH--IYDRFQGF---------------------GFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 158 ~~~--~~~~~~~~---------------------~~~~g~~~~a~~l~~~m~~~~ 189 (219)
+.| .|+.+... ....|+.+.|.+.|++..+.+
T Consensus 175 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 988 35441110 124799999999999887543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00071 Score=45.52 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=55.7
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhcCCCC-Ch---hhHHHHHHHH
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL---VHDSLCLLDTLKTPA-PP---VAWKSIIRCC 81 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~~-~~---~~~~~li~~~ 81 (219)
.+++.+...+++++|++.|....+.+ +.+..++..+-.++.+.++ .++|..+|+..-... +. .+|..+=.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45555666667777777777766655 4455566666666655443 345666666654210 11 2455555666
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcc
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHN 107 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~ 107 (219)
.+.|++++|.+.|+..++ +.|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 667777777777766655 345543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.40 E-value=0.00066 Score=48.67 Aligned_cols=97 Identities=7% Similarity=-0.112 Sum_probs=78.2
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVL 113 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll 113 (219)
|+...+-..=..|.+.|++++|+..|.... .|.+..+|+.+-.+|.+.|++++|...|....+ +.|+ ...|..+-
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHH
Confidence 444555555568889999999999998653 343788999999999999999999999998764 4675 45788888
Q ss_pred HHHhcccChhhHHHHHHHHHHh
Q 041894 114 KSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.+|.+.|+++.|...+....+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999886553
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.34 E-value=0.00049 Score=45.37 Aligned_cols=76 Identities=13% Similarity=0.010 Sum_probs=44.1
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
..+.+.|++++|...|++..+. .|+ ...|..+-.++.+.|++++|...++...+.. +.+...+..|-..|...|++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 3445556666666666665543 343 3455555556666666666666666655544 23455666666666666666
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00089 Score=45.00 Aligned_cols=98 Identities=5% Similarity=-0.026 Sum_probs=76.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh---hHHHHHHHHhHhCCCCCCc-ccHHHHHHH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL---VESLTCFVRMIGSGVYPDH-NVFPSVLKS 115 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~-~t~~~ll~~ 115 (219)
...+++.+...+++++|++.|+..- .|.+..++..+-.++.+.++. ++|..+|++..+..-.|+. ..|..+-.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3567888899999999999998764 342778888888888876655 5699999998765433432 367778888
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccH
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDL 141 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~ 141 (219)
|.+.|+++.|...++...+.. |+-
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~--P~~ 105 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE--PQN 105 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHhhhHHHHHHHHHHHHhC--cCC
Confidence 999999999999999998865 553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=0.0016 Score=46.73 Aligned_cols=116 Identities=8% Similarity=-0.089 Sum_probs=59.7
Q ss_pred hCccccCChhHHHHHHHHHHHc--C-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKT--L-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~--g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~ 88 (219)
......|+++.|.+.|.+..+. | +.++.. .+ +-+...-..+... -...+..+..++.+.|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-----------~~--~w~~~~r~~l~~~-~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DF--QFVEPFATALVED-KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TS--TTHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCc-----------ch--HHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCch
Confidence 3566778888888888887763 2 111110 00 0000000111111 2344555666666666666
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHH-----HhCCCccHH
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-----RLGVDLDLY 142 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 142 (219)
+|...++...+.. +-+...|..++.++.+.|+..+|.+.|+... ..|+.|...
T Consensus 85 ~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 85 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 6666666655421 2244556666666666666666666655542 346666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.011 Score=44.85 Aligned_cols=161 Identities=12% Similarity=0.014 Sum_probs=112.5
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCC----CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCC-----Chhh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLE----PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPA-----PPVA 73 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~-----~~~~ 73 (219)
+..+-..+...|+++.+...+....+..- ......+..+...+...++...+...+.+.. ... ....
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 34444567788999999999988876532 2234455666667788888888877776542 110 1245
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---cccHHHHHHHHhcccChhhHHHHHHHHHH----hCCCcc-HHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD---HNVFPSVLKSCTLLVDFRFGESVHACIIR----LGVDLD-LYTNN 145 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~ 145 (219)
+..+...+...|++++|...+....+.....+ ...+..+-..+...|+++.|...++.... .+..|+ ...+.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 66677788889999999999988655432222 23445567788899999999999888653 344443 45677
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
.+-.+|.+.|++ ++|.+.|++-
T Consensus 296 ~la~~~~~~g~~------------------~~A~~~l~~A 317 (366)
T d1hz4a_ 296 LLNQLYWQAGRK------------------SDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHTCH------------------HHHHHHHHHH
T ss_pred HHHHHHHHCCCH------------------HHHHHHHHHH
Confidence 778899999999 8888877754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.79 E-value=0.0086 Score=46.35 Aligned_cols=177 Identities=10% Similarity=-0.102 Sum_probs=104.7
Q ss_pred hHHHHHHhCcccc--CChhHHHHHHHHHHHcCCCCcHHHHHHHH-HHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHH
Q 041894 5 KTLINLLKNPVSI--KTKSQAKQLHAQIFKTLEPNSRFLISRLL-FIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIR 79 (219)
Q Consensus 5 ~~~~~ll~~~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~ 79 (219)
..|..+-.++... ++++.+...+..+.+.. +++...+...+ ..+...+..++|...++.... |.+..+|+.+-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~ 186 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3444443333343 45788888888887764 33455554444 567778889999998887652 325667777666
Q ss_pred HHHhcCChhHHH------------------------------HHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHH
Q 041894 80 CCTQNGLLVESL------------------------------TCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVH 129 (219)
Q Consensus 80 ~~~~~g~~~~a~------------------------------~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 129 (219)
.+.+.|++++|. ..|...... -.++...+..+...+...++.+.|...+
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG-RAEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS-CCCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 666666654432 222222111 1223334444555555666777776666
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHh
Q 041894 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCN 202 (219)
Q Consensus 130 ~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~ 202 (219)
....+.. +.+...+..+-.+|.+.|+. ++|.+.|++..+.| ...-|+-+-..+.
T Consensus 266 ~~~~~~~-p~~~~~~~~l~~~~~~~~~~------------------~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 266 QELEPEN-KWCLLTIILLMRALDPLLYE------------------KETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHCTTC-HHHHHHHHHHHHHHCTGGGH------------------HHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhhC-chHHHHHHHHHHHHHHCCCH------------------HHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 6554433 22456666677777788888 99999999877543 1234555544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.006 Score=42.93 Aligned_cols=61 Identities=7% Similarity=0.120 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
+|+.+-.+|.+.|++++|+..++..++. .| +...|.-+-.+|...|+++.|...++...+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444555555556666666555554432 23 3345555555555556666666665555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.73 E-value=0.0011 Score=50.78 Aligned_cols=118 Identities=12% Similarity=-0.058 Sum_probs=81.2
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLT 92 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~ 92 (219)
-+.|+++.|...+.+.++.. +-|...+..+...|+..|++++|...|+... .|.+...+..+-..+...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 36799999999999999886 5588999999999999999999999998875 34134555555444443333333221
Q ss_pred HHHHhHhCCC--CC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 93 CFVRMIGSGV--YP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 93 ~~~~m~~~g~--~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
......+ .| +...+......+...|+.+.|.+.++...+..
T Consensus 86 ---~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 86 ---GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp ---SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ---HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 1111111 22 23344445566778899999999999887764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.72 E-value=0.0096 Score=41.05 Aligned_cols=63 Identities=5% Similarity=-0.049 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.+|+.+-.+|.+.|++++|.+.+...++. .| +...|..+-.++...|+++.|...+....+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666777777777777777777776543 34 44577777777777777777777777766654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.0032 Score=42.24 Aligned_cols=88 Identities=9% Similarity=0.038 Sum_probs=60.3
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC-cc-----HHHHHHHHHHH
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-LD-----LYTNNALMNMY 151 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~-----~~~~~~ll~~y 151 (219)
..+.+.|++++|...|.+.++. .| +...|..+-.+|.+.|+++.|...+...++.... +. ..+|..+=..+
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888887654 34 4567777788888888888888888886553211 11 23555555666
Q ss_pred HhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 152 AQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 152 ~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
...+++ ++|.+.|++-.
T Consensus 90 ~~~~~~------------------~~A~~~~~kal 106 (128)
T d1elra_ 90 FKEEKY------------------KDAIHFYNKSL 106 (128)
T ss_dssp HHTTCH------------------HHHHHHHHHHH
T ss_pred HHhCCH------------------HHHHHHHHHHH
Confidence 666777 88888887643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.52 E-value=0.02 Score=39.88 Aligned_cols=81 Identities=7% Similarity=-0.008 Sum_probs=58.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
+...|+.+-.++.+.|++++|...|...++. .|+ ...|..+-.++...|+++.|...++...+... .+......|-
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 3456677778888889999999999887764 353 45777788888888999999999888877652 3455555555
Q ss_pred HHHHh
Q 041894 149 NMYAQ 153 (219)
Q Consensus 149 ~~y~~ 153 (219)
.++-+
T Consensus 153 ~~~~~ 157 (169)
T d1ihga1 153 KVKQK 157 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.0038 Score=41.80 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=27.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
+.+.|+++.|...|.+.++.. +.+...+..+=.+|.+.|++++|...++..
T Consensus 14 ~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (128)
T d1elra_ 14 AYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence 444555555555555555543 234445555555555555555555555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.026 Score=42.57 Aligned_cols=144 Identities=10% Similarity=-0.018 Sum_probs=100.5
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC----hhhHHHHHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNS----RFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP----PVAWKSIIR 79 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~----~~~~~~li~ 79 (219)
.+...|+++.|..++.+..+..-..+ ...++.+-..|...|++++|...|.+.. .+ + ..++..+..
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-VWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence 45688999999999999887542211 2356667778999999999999998753 12 2 245667778
Q ss_pred HHHhcCChhHHHHHHHHhHh----CCCCCCc---ccHHHHHHHHhcccChhhHHHHHHHHHHhCC----CccHHHHHHHH
Q 041894 80 CCTQNGLLVESLTCFVRMIG----SGVYPDH---NVFPSVLKSCTLLVDFRFGESVHACIIRLGV----DLDLYTNNALM 148 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~----~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~~~ll 148 (219)
.+...|++..+...+.+... .+..+.. ..+..+-..+...|+++.+...+........ ......+..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 88899999999999988543 2222221 2344555677888999999999888765432 22344555556
Q ss_pred HHHHhcCCc
Q 041894 149 NMYAQSQNM 157 (219)
Q Consensus 149 ~~y~~~g~~ 157 (219)
..+...|+.
T Consensus 180 ~~~~~~~~~ 188 (366)
T d1hz4a_ 180 QCSLARGDL 188 (366)
T ss_dssp HHHHHHTCH
T ss_pred HHHHhhhhH
Confidence 667777777
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.41 E-value=0.007 Score=43.22 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh-----CCCCCCcc
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG-----SGVYPDHN 107 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ 107 (219)
..+..+...+.+.|++++|...++... .|.+...|..++.+|.+.|+..+|.+.|++..+ -|+.|+..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 345566666666666666666666543 232556666666666666666666666666532 36666543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.41 E-value=0.01 Score=41.53 Aligned_cols=81 Identities=7% Similarity=0.139 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
.|+.+-.+|.+.|++++|...+...++.. +.+...|...-.++...|+++.|...++...+.. +.+......+-.+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45556666777777777777777765431 2244566666777777777777777777766543 123334444433333
Q ss_pred hcC
Q 041894 153 QSQ 155 (219)
Q Consensus 153 ~~g 155 (219)
+.+
T Consensus 144 ~~~ 146 (168)
T d1kt1a1 144 KAK 146 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.37 E-value=0.023 Score=38.94 Aligned_cols=60 Identities=8% Similarity=-0.045 Sum_probs=52.5
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+|..+-.+|.+.|+++.|...+....+.. +.+...|..+-.+|...|++ ++|...|++..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~------------------~~A~~~~~~al 128 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFL------------------EEAKENLYKAA 128 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCH------------------HHHHHHHHHHH
Confidence 56667788899999999999999988876 45788999999999999999 99999998766
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.017 Score=40.40 Aligned_cols=61 Identities=7% Similarity=-0.065 Sum_probs=51.9
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
+|+.+-.+|.+.|+++.|...++...+.. +.+...|..+-.+|...|++ ++|.+.|++..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~------------------~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDF------------------ELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhH------------------HHHHHHHHHHHH
Confidence 45667778889999999999999988876 34788888899999999999 999999998763
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.17 E-value=0.022 Score=39.58 Aligned_cols=96 Identities=6% Similarity=-0.090 Sum_probs=73.8
Q ss_pred HHHhCccccCChhHHHHHHHHHHHc--------------CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKT--------------LEPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP 71 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~--------------g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~ 71 (219)
..-..+.+.|+++.|...|.+.++. .+.| +...|..+-.+|.+.|++++|+..++... .|.+.
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 111 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT 111 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh
Confidence 3344567889999999999877542 1112 33456777788999999999999998764 34378
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 106 (219)
.+|..+-.+|.+.|++++|...|....+ +.|+.
T Consensus 112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n 144 (169)
T d1ihga1 112 KALYRRAQGWQGLKEYDQALADLKKAQE--IAPED 144 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCC
Confidence 8999999999999999999999999876 35654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.09 E-value=0.08 Score=41.43 Aligned_cols=138 Identities=11% Similarity=0.065 Sum_probs=87.5
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~ 82 (219)
|..--..+..-|.+.|.++.|..+|..+. -|..++..|.+.++++.|.+++.... +..+|..+...+.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~---~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACV 80 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 33334455667778888888888887543 25778888889999999988887664 4478888888888
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
+.....-+ .+.......+......++..|-..|.+++...+++..... -..+...++-|+.+|++.+.-+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~~k 150 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKPQK 150 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhChHH
Confidence 87655443 2333334445556677888888888888888887765432 2456667888888888876554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.98 E-value=0.028 Score=43.28 Aligned_cols=141 Identities=11% Similarity=0.040 Sum_probs=97.8
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHH-HHHH---HHHHH-------hhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRF-LISR---LLFIY-------NNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~-~~~~---ll~~~-------~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
+....+.|..++++.++. .|+.. .|+. ++..+ ...|++++|+.+++... .|.+...|..+-.++.
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence 334458999999999875 45443 3322 22333 33455788888888754 3326778888777777
Q ss_pred hcCC--hhHHHHHHHHhHhCCCCCCcccHHHH-HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 83 QNGL--LVESLTCFVRMIGSGVYPDHNVFPSV-LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 83 ~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
..++ .++|...+....+.. +++...+... -..+...+..+.|...++...+.. +.+...|+.+-.+|.+.|+++.
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 7654 789999999987642 2234444433 356667899999999998887776 3567889999999999999976
Q ss_pred H
Q 041894 160 H 160 (219)
Q Consensus 160 ~ 160 (219)
+
T Consensus 197 A 197 (334)
T d1dcea1 197 S 197 (334)
T ss_dssp S
T ss_pred H
Confidence 6
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=95.78 E-value=0.028 Score=39.10 Aligned_cols=105 Identities=11% Similarity=-0.069 Sum_probs=77.1
Q ss_pred HHhCccccCChhHHHHHHHHHHHcC---CCC-----------cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhh
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTL---EPN-----------SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVA 73 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g---~~~-----------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~ 73 (219)
.=..+.+.|++..|...|...+..- ..+ ...+|+.+-.+|.+.|++++|...++... .|.+..+
T Consensus 21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a 100 (168)
T d1kt1a1 21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 100 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHH
Confidence 3345778899999999998876421 111 11345556678899999999999998754 3437889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
|..+-.++...|++++|...|....+ +.|+.......+..+
T Consensus 101 ~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 101 LYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999999999999999876 467655444444333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.68 E-value=0.026 Score=38.47 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=74.9
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc----------CCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF----------NLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~----------g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
|-+.+.++.|...|+...+.. +.+..++..+=..|... +.+++|...|+... .|.+..+|..+=.+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 345567899999999998876 44666666555555533 44577888887654 342677888877777
Q ss_pred HhcCC-----------hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCC
Q 041894 82 TQNGL-----------LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 82 ~~~g~-----------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 137 (219)
...|+ +++|.+.|+...+ +.|+..+|...+.-+ ..+.+++.+..+.|+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 66542 4667777766554 468877766555554 345666666666553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.45 E-value=0.0038 Score=47.60 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=71.8
Q ss_pred hhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCccc-HHHHHHHHhcccChhhHH
Q 041894 50 NNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV-FPSVLKSCTLLVDFRFGE 126 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~ 126 (219)
.+.|++++|...+.+.. .|.|...+..+...++..|++++|...|+...+. .|+... +..+-..+...+..+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~-- 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD-- 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH--
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH--
Confidence 46799999999998763 5548899999999999999999999999998764 565432 2222222221112111
Q ss_pred HHHHHHHHhCC---CccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 127 SVHACIIRLGV---DLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 127 ~~~~~m~~~g~---~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++....+..+ .++...+......+.+.|+. ++|.+++++..
T Consensus 83 -a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~------------------~~A~~~~~~a~ 126 (264)
T d1zbpa1 83 -FAQGAATAKVLGENEELTKSLVSFNLSMVSQDY------------------EQVSELALQIE 126 (264)
T ss_dssp -HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred -HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCH------------------HHHHHHHHHHH
Confidence 1111111111 22334444445667788999 88888887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.83 E-value=0.049 Score=37.21 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=8.9
Q ss_pred ccCChhHHHHHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFK 32 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~ 32 (219)
+.|+++.|...|.+.++
T Consensus 21 ~~g~y~~Ai~~y~~Al~ 37 (156)
T d2hr2a1 21 VAGEYDEAAANCRRAME 37 (156)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.76 E-value=0.19 Score=34.00 Aligned_cols=85 Identities=9% Similarity=-0.010 Sum_probs=48.8
Q ss_pred hHHHH--HHHHHhcCChhHHHHHHHHhHhC-CCCCC----------cccHHHHHHHHhcccChhhHHHHHHHHHHh----
Q 041894 73 AWKSI--IRCCTQNGLLVESLTCFVRMIGS-GVYPD----------HNVFPSVLKSCTLLVDFRFGESVHACIIRL---- 135 (219)
Q Consensus 73 ~~~~l--i~~~~~~g~~~~a~~~~~~m~~~-g~~p~----------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 135 (219)
+|..+ -..+.+.|++++|.+.|.+-++- .-.|+ ...|+.+-.+|...|+++.|..-++...+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 33444557777777777765421 11122 234666667777777777777776664432
Q ss_pred -CCCcc-----HHHHHHHHHHHHhcCCc
Q 041894 136 -GVDLD-----LYTNNALMNMYAQSQNM 157 (219)
Q Consensus 136 -g~~~~-----~~~~~~ll~~y~~~g~~ 157 (219)
...++ ...++.+=.+|.+.|++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~ 116 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRG 116 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHH
Confidence 11111 23456667889999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.01 E-value=0.39 Score=37.31 Aligned_cols=134 Identities=10% Similarity=0.086 Sum_probs=88.1
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
.||..--..+...|.+.|.++.|..++..+ .-|.-++..+.+.++++.|++++... -+..+|.-+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~------~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC------CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHH
Confidence 455555667777888999999999999855 44778889999999999998888653 145588889999
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC---CCCCee
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP---ERNGNV 192 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~---~~~~~~ 192 (219)
|.+......+ ++.......+......++..|-..|.+ +....+++... ..+ ..
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~------------------e~Li~~Le~~~~~~~~~-~~ 134 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYF------------------EELITMLEAALGLERAH-MG 134 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHTTSTTCC-HH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCCh------------------HHHHHHHHHHHcCCccc-hH
Confidence 9887666443 222334445555667899999999999 88888888543 234 56
Q ss_pred ehhHHHHHHhhhh
Q 041894 193 ELSSGLAGCNKFE 205 (219)
Q Consensus 193 ~~n~ll~~~~~~~ 205 (219)
.++-++..|++.+
T Consensus 135 ~~~~L~~lyak~~ 147 (336)
T d1b89a_ 135 MFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 7888999998876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.26 Score=30.39 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=34.5
Q ss_pred hCccccCChhHHHHHHHHHHHcC-----CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTL-----EPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g-----~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
..+.+.|+++.|...|++..+.. ..+ ...+++.|=.+|.+.|++++|...+++.-
T Consensus 13 ~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence 34567777888877777765532 111 23456666667777777777777776643
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.98 E-value=0.76 Score=28.85 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
+..+-+..+..-.+.|...+..+.|++|.+.+++..|.++++.++.. ..++...|..+++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 33344444445567777777777777777777777777777766432 2334556665553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.93 E-value=0.31 Score=39.74 Aligned_cols=113 Identities=7% Similarity=-0.113 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTL 118 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~ 118 (219)
.+..+=..+.+.|+.+.|...+.....+ + ..++..+=..+...|++++|...|.+-.+. .|+. ..|+.+-..+..
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY-ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASS 198 (497)
T ss_dssp ---------------------CCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHH
Confidence 3344444445555555555444332222 2 244556667778888999999999886653 5654 688888888888
Q ss_pred ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.|+..+|...+..-.... .|-...+..|...|-+..+.
T Consensus 199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~~~ 236 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKALES 236 (497)
T ss_dssp TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhhhh
Confidence 999998888887766654 45677788888888765543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=1 Score=27.37 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=14.4
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
++..+-.++.+.|++++|...++...+.
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444455555555555555555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.69 E-value=2.2 Score=28.22 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=21.1
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 110 PSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 110 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
...++.....|.-++-..+...+.+++ +++....-.+-.+|-+.|..
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~ 136 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDE 136 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcch
Confidence 334444444444444444444444433 34444444444555555555
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.19 E-value=1.2 Score=29.51 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=64.2
Q ss_pred HhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc----------CChhHHHHHHHHhHhCCCCCC-cccHHHHHHH
Q 041894 49 YNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN----------GLLVESLTCFVRMIGSGVYPD-HNVFPSVLKS 115 (219)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~ 115 (219)
|-+.+.+++|+..|+..- .|.+..++..+=.++... +.+++|...|+..++ +.|+ ...|..+-.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHHH
Confidence 345566899999998764 443666776666666543 445788888888765 4565 4577777777
Q ss_pred Hhccc-----------ChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 116 CTLLV-----------DFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 116 ~~~~g-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
|...| .++.|.+.|+...+. .|+...|..-+..+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH
Confidence 76554 357777788777665 46655555444433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=85.95 E-value=3.3 Score=27.34 Aligned_cols=119 Identities=8% Similarity=-0.056 Sum_probs=79.5
Q ss_pred cCChhHHHHHHHHHHHcCCC--CcHHHHHHH-----------HHHH------hhcCCHHHHHHHHHhcCCCCChhhHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEP--NSRFLISRL-----------LFIY------NNFNLVHDSLCLLDTLKTPAPPVAWKSI 77 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~--~~~~~~~~l-----------l~~~------~~~g~~~~A~~~~~~m~~~~~~~~~~~l 77 (219)
.|..++..++.....++.-. .+=+..|.+ ++.- ..+++++....-+-.+. . +..-.+..
T Consensus 15 dG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n-~-~se~vdlA 92 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-T-LNEHVNKA 92 (161)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-C-CCHHHHHH
T ss_pred hhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhc-c-hHHHHHHH
Confidence 46678888888887766511 111111111 1111 22334444444443332 2 45667888
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 138 (219)
++...+.|+-++-.++++++.+++ +|++...-.+-++|.+.|+.+++..++.+.=+.|++
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 999999999999999999987765 677778888899999999999999999988888864
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=84.25 E-value=3.6 Score=26.34 Aligned_cols=111 Identities=12% Similarity=-0.043 Sum_probs=67.4
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHH
Q 041894 18 KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----NGLLVESLTC 93 (219)
Q Consensus 18 ~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~~a~~~ 93 (219)
.++++|..+|.+..+.|.... +..| +.....+.++|.+.+....+.+++.++..|=..|.. ..+.++|.++
T Consensus 7 kd~~~A~~~~~kaa~~g~~~a---~~~l--~~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMFG---CLSL--VSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH---HHHH--HTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCChhh---hhhh--ccccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 467899999999988884322 2222 334566788999988876544356665555444443 3467888888
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhC
Q 041894 94 FVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLG 136 (219)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g 136 (219)
|+.-.+.|- |+ ....|-..|.. ..+.+.|...+..-.+.|
T Consensus 82 ~~~aa~~g~-~~--a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 82 YSKACGLND-QD--GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHTTC-HH--HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HhhhhccCc-ch--HHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 888777662 22 22222222222 345666777766666655
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.65 E-value=1.4 Score=35.52 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
++..+=..+...+++++|...+.+.. .|.+..+|+.|=..+...|+..+|...|.+-.... +|-...+..|...+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 34445556666777777777776543 33245677777777777777777777666654332 23333444444433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.80 E-value=2.7 Score=26.20 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=12.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
++....+.+++|.+.+++.-|.++|
T Consensus 40 eP~Ii~aALrAcRRvND~alAVR~l 64 (105)
T d1v54e_ 40 EPKIIDAALRACRRLNDFASAVRIL 64 (105)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444455555555555555555555
|