Citrus Sinensis ID: 041899

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650
MLQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKMPRVAGRPWLKT
cHHHHHccccccHHHHHHHHHHHHccEEEEEccccccccccccHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccEEEccHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHcccccEEEEccccccccEEEcccccHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHcccccccccccEEEEEEcccccccccccEEEEEcccccccccccccccccEEEEEEcccccccccccccccccccEEEEcccHHHHHHHccccccccEEccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccHHHHcccccccHHHHHHHHHHccccccEEEccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccEEEcccccEEEEccccccccccccEEEEEHHHHccccccEEccEEcccHHHHHcccccccccccHHHHccccccccccccc
cHHHHHcccccHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHccccccccEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccEEEEEcccHHHHHHHHccccHHccEEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccEEEcccccccEEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHcccccEEEEEEEHccccHHHHHHHcccccccccEEEEEEEEEEEEEEEccEEEEEccccEEEccccccccccEEEEcEcHHHHHHHHcccccccccccEEEEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHcHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHcccHHHHcccccccEEEEEcccEEEEcccHHHHcccccEEEEEEEEEccHHHHHHcccccHHHHHHHcHHHcccccHHHHHHcccHccccccccc
mlqkerktlpiyhYREQVLRAVQENQVVVIVGetgsgkttqipqylheagytkhgkvgctqpRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLRemlsdpklesysVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATldaekfsayfnfapilrvpgrrypveihytkapesnyidAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIgelivcpvyanlptelqakifvptpdgarKVVLATNIAETSLTIDGIKYVVDSGyskmkwynpktgmeslLVYPISKASAMqragrsgrtgpgkcfRLYTINSyqedmedntvpeiqrTNLANVILILKNlgiddllnfdfldsppQELLRKALELLYALGALNQVGELTKVgrqmaefpldpmlskmivasdkfkcsnEIITIAALLSVgnsvfyrpknkkfladnarmnfyqgdagdHIALLNVYnswkendyskqwcydnFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQkngsywtvkhpqkvhvhpssglaqvpkRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKkmprvagrpwlkt
mlqkerktlpiyhyrEQVLRAVQENQVVVIVGetgsgkttqipQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMgvklghevgysirfedctsekTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYtkapesnyIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLAtniaetsltidgikYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRagrsgrtgpgkcFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVhpssglaqvpkRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKMprvagrpwlkt
MLQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPrrvaaisvaarvsrEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQeeietveeilkeRIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQellrkalellyalGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKMPRVAGRPWLKT
********LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPIS****************GKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDL***************
**QKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKE********IGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFY*****************QGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYY***********************
MLQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKA***********TGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKMPRVAGRPWLKT
MLQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAM********TGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKD*******************
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MLQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKMPRVAGRPWLKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query650 2.2.26 [Sep-21-2011]
Q54MH31106 Putative pre-mRNA-splicin yes no 0.987 0.580 0.638 0.0
Q767K61045 Putative pre-mRNA-splicin yes no 0.987 0.614 0.639 0.0
Q7YR391044 Putative pre-mRNA-splicin yes no 0.987 0.614 0.637 0.0
O602311041 Putative pre-mRNA-splicin yes no 0.987 0.616 0.637 0.0
O452441008 Probable pre-mRNA-splicin yes no 0.987 0.636 0.627 0.0
Q107521055 Pre-mRNA-splicing factor yes no 0.983 0.605 0.618 0.0
Q145621220 ATP-dependent RNA helicas no no 0.973 0.518 0.579 0.0
A2A4P01244 ATP-dependent RNA helicas no no 0.973 0.508 0.579 0.0
Q54F051160 ATP-dependent RNA helicas no no 0.976 0.547 0.552 0.0
Q389531168 Probable pre-mRNA-splicin no no 0.976 0.543 0.552 0.0
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1 Back     alignment and function desciption
 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/644 (63%), Positives = 528/644 (81%), Gaps = 2/644 (0%)

Query: 2    LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61
            +Q+ RK+LP+Y YREQ++ AV+E QV++IVGETGSGKTTQIPQYLHEAG++K GK+GCTQ
Sbjct: 460  IQEVRKSLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGKIGCTQ 519

Query: 62   PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLE 121
            PRRVAA+SVAARV+ E+G KLG+EVGYSIRFEDCTS+KTVL+YMTDGM++RE L+ P L 
Sbjct: 520  PRRVAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLA 579

Query: 122  SYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRV 181
            SYSVL++DEAHERTL TDIL G+ KD+ R R DLKLLISSAT+DAE+FS YF+ AP   +
Sbjct: 580  SYSVLIIDEAHERTLHTDILFGLLKDITRFRPDLKLLISSATMDAERFSDYFDGAPTFNI 639

Query: 182  PGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERI 241
            PGR+Y V  HYT+APE++Y+DAA+VT L+IH T+  GDILVFLTGQEE++   E+L+ R 
Sbjct: 640  PGRKYEVTTHYTQAPEADYLDAAVVTVLQIHITEPLGDILVFLTGQEEVDQAAEMLQTRT 699

Query: 242  RKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDS 301
            R LGTKI ELI+  +Y+ LPT+LQAKIF PTP  ARKVVLATNIAETSLTIDGI YV+D 
Sbjct: 700  RGLGTKIKELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDP 759

Query: 302  GYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTV 361
            G+ K K +NP+TGMESL++ P+S+ASA QR GR+GR  PGKCFRL+T  ++  ++E+NT+
Sbjct: 760  GFCKQKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFRLFTAWAFDNELEENTI 819

Query: 362  PEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVG 421
            PEIQRTNL NV+L+LK++GI+DL+NFDF+D PP + L  ALE LYALGALN  G+LTK+G
Sbjct: 820  PEIQRTNLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLTKLG 879

Query: 422  RQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFY 481
            R+MAEFP+DP LSKMI+AS+K+KCS EI+TI A+LSVGN++FYRPK+K F AD AR  F+
Sbjct: 880  RKMAEFPVDPQLSKMIIASEKYKCSEEILTICAMLSVGNTIFYRPKDKAFAADAARKLFF 939

Query: 482  QGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTS 541
                GDH+ L+NV+N W+E+ Y+ QWC++NFIQ RSMK A+D+RDQL  L+ERV I L S
Sbjct: 940  HP-QGDHLTLMNVFNQWRESGYAVQWCFENFIQHRSMKRAQDVRDQLELLLERVEIPLVS 998

Query: 542  SLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELV 601
            ++ + ++++K I SGF  ++A+L+K+G + T KH Q V +HPSS L Q P +WV+YHELV
Sbjct: 999  NVDDTDSIRKCIASGFFYNSAKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELV 1058

Query: 602  LTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKMPRVAGR 645
            LTTKE+MRQ+ E++  WL EIAPH Y  KDV D  +K+P+  G+
Sbjct: 1059 LTTKEFMRQIVEIQSSWLHEIAPHIYKEKDVND-NQKLPKNIGK 1101
Probable ATP-binding RNA helicase involved in pre-mRNA splicing.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Sus scrofa GN=DHX16 PE=3 SV=1 Back     alignment and function description
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1 Back     alignment and function description
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2 Back     alignment and function description
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2 Back     alignment and function description
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc28 PE=3 SV=2 Back     alignment and function description
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1 Back     alignment and function description
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1 Back     alignment and function description
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1 Back     alignment and function description
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query650
225457283 1056 PREDICTED: putative pre-mRNA-splicing fa 0.990 0.609 0.787 0.0
357112047 1051 PREDICTED: putative pre-mRNA-splicing fa 0.995 0.615 0.766 0.0
242056951 1046 hypothetical protein SORBIDRAFT_03g01054 0.995 0.618 0.759 0.0
356516851 1035 PREDICTED: putative pre-mRNA-splicing fa 0.992 0.623 0.781 0.0
356516849 1044 PREDICTED: putative pre-mRNA-splicing fa 0.992 0.617 0.781 0.0
326489737 1046 predicted protein [Hordeum vulgare subsp 0.995 0.618 0.760 0.0
334182986 1034 pre-mRNA-splicing factor ATP-dependent R 0.995 0.625 0.748 0.0
22329903 1044 pre-mRNA-splicing factor ATP-dependent R 0.990 0.616 0.751 0.0
218200972 1046 hypothetical protein OsI_28838 [Oryza sa 0.976 0.607 0.758 0.0
449440832 1055 PREDICTED: putative pre-mRNA-splicing fa 0.990 0.610 0.781 0.0
>gi|225457283|ref|XP_002284415.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/645 (78%), Positives = 573/645 (88%), Gaps = 1/645 (0%)

Query: 2    LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61
            LQ++RK LPIY YR+++L+AV ++Q++VIVGETGSGKTTQIPQYLHE+GYTK GKVGCTQ
Sbjct: 408  LQEDRKMLPIYPYRDELLKAVDDHQILVIVGETGSGKTTQIPQYLHESGYTKRGKVGCTQ 467

Query: 62   PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLE 121
            PRRVAA+SVAARVS+EMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGM+LRE L +P L 
Sbjct: 468  PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLA 527

Query: 122  SYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRV 181
            SYSV+MVDEAHERTLSTDIL G+ KD+ R R DLKLLISSATLDAEKFS YF+ API ++
Sbjct: 528  SYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKI 587

Query: 182  PGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERI 241
            PGRRYPVEIHYTKAPE++Y+DAAIVT L+IH TQ  GDILVFLTGQEEIET EEI+K R 
Sbjct: 588  PGRRYPVEIHYTKAPEADYLDAAIVTALQIHVTQPPGDILVFLTGQEEIETAEEIMKHRT 647

Query: 242  RKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDS 301
            R LGTKI ELI+CP+YANLPTELQA IF PTP+GARKVVLATNIAETSLTIDGIKYV+D 
Sbjct: 648  RGLGTKIAELIICPIYANLPTELQANIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDP 707

Query: 302  GYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTV 361
            G+ KMK YNP+TGMESLLV PISKASAMQRAGRSGRTGPGKCFRLYT  +Y  D+EDNTV
Sbjct: 708  GFCKMKSYNPRTGMESLLVNPISKASAMQRAGRSGRTGPGKCFRLYTAYNYYNDLEDNTV 767

Query: 362  PEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVG 421
            PEIQRTNLANV+L LK+LGI DLLNFDF+D PP E L KALELLYAL ALN++GELTKVG
Sbjct: 768  PEIQRTNLANVVLSLKSLGIHDLLNFDFMDPPPAEALLKALELLYALSALNRLGELTKVG 827

Query: 422  RQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFY 481
            R+MAEFPLDPMLSKMIVA+D +KCS+EII+IAA+LSVGNS+FYRPK+K+  ADNARMNF+
Sbjct: 828  RRMAEFPLDPMLSKMIVAADNYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFH 887

Query: 482  QGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTS 541
             G+ GDHIALL VY+SWKE +YS QWCY+N+IQ RSMK ARD+RDQL  L+ERV IEL S
Sbjct: 888  TGNVGDHIALLKVYSSWKETNYSTQWCYENYIQVRSMKRARDVRDQLEGLLERVEIELAS 947

Query: 542  SLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELV 601
            +  +L+A+KK+I +GF  H+ARLQKNGSY TVKHPQ VH+HPSSGLAQV  RWVIYHELV
Sbjct: 948  NPNDLDAIKKSITAGFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVIYHELV 1007

Query: 602  LTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDL-RKKMPRVAGR 645
            LTTKEYMRQVTELKPEWL EIAPH+Y LKDVED   KKMPR  GR
Sbjct: 1008 LTTKEYMRQVTELKPEWLVEIAPHFYQLKDVEDPGSKKMPRTEGR 1052

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357112047|ref|XP_003557821.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242056951|ref|XP_002457621.1| hypothetical protein SORBIDRAFT_03g010540 [Sorghum bicolor] gi|241929596|gb|EES02741.1| hypothetical protein SORBIDRAFT_03g010540 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|356516851|ref|XP_003527106.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356516849|ref|XP_003527105.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|326489737|dbj|BAK01849.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|334182986|ref|NP_001185127.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gi|332193372|gb|AEE31493.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22329903|ref|NP_174527.2| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gi|18377729|gb|AAL67014.1| putative RNA helicase [Arabidopsis thaliana] gi|22136924|gb|AAM91806.1| putative RNA helicase [Arabidopsis thaliana] gi|332193371|gb|AEE31492.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218200972|gb|EEC83399.1| hypothetical protein OsI_28838 [Oryza sativa Indica Group] gi|222640378|gb|EEE68510.1| hypothetical protein OsJ_26936 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449440832|ref|XP_004138188.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query650
TAIR|locus:20337231044 ESP3 "ENHANCED SILENCING PHENO 0.990 0.616 0.705 1e-249
TAIR|locus:20624921044 MEE29 "maternal effect embryo 0.992 0.617 0.695 2.3e-245
ZFIN|ZDB-GENE-030131-85891054 dhx16 "DEAH (Asp-Glu-Ala-His) 0.987 0.609 0.609 1.2e-216
DICTYBASE|DDB_G02859371106 dhx16 "putative RNA splicing f 0.987 0.580 0.602 3.2e-216
FB|FBgn0086444894 l(2)37Cb "lethal (2) 37Cb" [Dr 0.989 0.719 0.613 3.2e-216
RGD|13029631044 Dhx16 "DEAH (Asp-Glu-Ala-His) 0.987 0.614 0.603 3.7e-213
UNIPROTKB|E1BF681045 DHX16 "Uncharacterized protein 0.987 0.614 0.600 7e-212
UNIPROTKB|F1PGL21042 DHX16 "Uncharacterized protein 0.987 0.616 0.599 7e-212
UNIPROTKB|F1RU831045 DHX16 "Putative pre-mRNA-splic 0.987 0.614 0.597 1.9e-211
UNIPROTKB|Q767K61045 DHX16 "Putative pre-mRNA-splic 0.987 0.614 0.597 1.9e-211
TAIR|locus:2033723 ESP3 "ENHANCED SILENCING PHENOTYPE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2405 (851.7 bits), Expect = 1.0e-249, P = 1.0e-249
 Identities = 455/645 (70%), Positives = 537/645 (83%)

Query:     2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61
             LQ+ R++LPIY YR+Q+L+AV+E+QV+VIVG+TGSGKTTQIPQYLHEAGYTK GKVGCTQ
Sbjct:   397 LQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQ 456

Query:    62 PXXXXXXXXXXXXXXEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLE 121
             P              EMGVKLGHEVGYSIRFEDCTS+KTVLKYMTDGM+LRE+L +P L 
Sbjct:   457 PRRVAAMSVAARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLA 516

Query:   122 SYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRV 181
             SYSV++VDEAHERTLSTDIL G+ KD+ R R DLKLLISSAT+DAEKFS YF+ API   
Sbjct:   517 SYSVVIVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATMDAEKFSDYFDTAPIFSF 576

Query:   182 PGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQXXXXXXXXXXXXRI 241
             PGRRYPVEI+YT APE++Y+DAAIVT L IH  +  GDILVF TGQ            RI
Sbjct:   577 PGRRYPVEINYTSAPEADYMDAAIVTILTIHVREPLGDILVFFTGQEEIETAEEILKHRI 636

Query:   242 RKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDS 301
             R LGTKI ELI+CP+YANLP+ELQAKIF PTP+GARKVVLATNIAETSLTIDGIKYVVD 
Sbjct:   637 RGLGTKIRELIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDP 696

Query:   302 GYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTV 361
             G+SKMK YNP+TGMESLL+ PISKASA QRAGR+GRT PGKC+RLYT  +Y  D+E+NTV
Sbjct:   697 GFSKMKSYNPRTGMESLLITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTV 756

Query:   362 PEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQXXXXXXXXXXXXXGALNQVGELTKVG 421
             PE+QRTNLA+V+L LK+LGI DL+NFDF+D PP              GALN++GELTK G
Sbjct:   757 PEVQRTNLASVVLALKSLGIHDLINFDFMDPPPAEALVKSLELLFALGALNKLGELTKAG 816

Query:   422 RQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFY 481
             R+MAEFPLDPMLSKMIV SDK+KCS+EII+IAA+LS+G S+FYRPK+K+  ADNARMNF+
Sbjct:   817 RRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFH 876

Query:   482 QGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTS 541
              G+ GDHIALL VY+SWKE ++S QWCY+N+IQ RSMK ARDIRDQL  L+ERV I+++S
Sbjct:   877 TGNVGDHIALLKVYSSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDISS 936

Query:   542 SLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELV 601
             +L  L++++K+I++GF  HTA+LQKNGSY TVKHPQ VH+HP+SGL+QV  RWV+YHELV
Sbjct:   937 NLNELDSVRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELV 996

Query:   602 LTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLR-KKMPRVAGR 645
             LT+KEYMRQVTELKPEWL E+APHYY LKDVED   KKMP+ AG+
Sbjct:   997 LTSKEYMRQVTELKPEWLIELAPHYYQLKDVEDAASKKMPKGAGK 1041
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008026 "ATP-dependent helicase activity" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0008380 "RNA splicing" evidence=NAS
GO:0035194 "posttranscriptional gene silencing by RNA" evidence=IMP
GO:0016020 "membrane" evidence=IDA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
TAIR|locus:2062492 MEE29 "maternal effect embryo arrest 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8589 dhx16 "DEAH (Asp-Glu-Ala-His) box polypeptide 16" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285937 dhx16 "putative RNA splicing factor" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0086444 l(2)37Cb "lethal (2) 37Cb" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1302963 Dhx16 "DEAH (Asp-Glu-Ala-His) box polypeptide 16" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BF68 DHX16 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGL2 DHX16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RU83 DHX16 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q767K6 DHX16 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7YR39DHX16_PANTR3, ., 6, ., 4, ., 1, 30.63770.98760.6149yesno
O45244DHX16_CAEEL3, ., 6, ., 4, ., 1, 30.62750.98760.6369yesno
O60231DHX16_HUMAN3, ., 6, ., 4, ., 1, 30.63770.98760.6167yesno
Q767K6DHX16_PIG3, ., 6, ., 4, ., 1, 30.63930.98760.6143yesno
Q10752CDC28_SCHPO3, ., 6, ., 4, ., 1, 30.61890.98300.6056yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.914
3rd Layer3.6.40.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
4345304
ATP-dependent RNA helicase, putative, expressed (1051 aa)
(Oryza sativa Japonica)
Predicted Functional Partners:
4327257
ribosomal protein L27, putative, expressed (195 aa)
      • 0.746
4335478
FACT complex subunit SPT16, putative, expressed; Component of the FACT complex, a general chrom [...] (1056 aa)
   •  • 0.666
3950718
Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain [...] (260 aa)
      • 0.649

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query650
COG1643 845 COG1643, HrpA, HrpA-like helicases [DNA replicatio 0.0
TIGR01967 1283 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H 1e-168
PRK11131 1294 PRK11131, PRK11131, ATP-dependent RNA helicase Hrp 1e-150
TIGR01970 819 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H 1e-111
PRK11664 812 PRK11664, PRK11664, ATP-dependent RNA helicase Hrp 1e-104
pfam0440891 pfam04408, HA2, Helicase associated domain (HA2) 2e-37
pfam07717109 pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch 6e-31
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 3e-30
smart0084782 smart00847, HA2, Helicase associated domain (HA2) 3e-27
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 1e-25
PHA02653675 PHA02653, PHA02653, RNA helicase NPH-II; Provision 3e-14
smart0049082 smart00490, HELICc, helicase superfamily c-termina 3e-13
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 8e-12
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 3e-09
pfam13191154 pfam13191, AAA_16, AAA ATPase domain 6e-04
pfam13401124 pfam13401, AAA_22, AAA domain 0.001
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  738 bits (1907), Expect = 0.0
 Identities = 299/698 (42%), Positives = 406/698 (58%), Gaps = 55/698 (7%)

Query: 2   LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61
           + + R  LP+   R+++L+A+++NQVV+IVGETGSGKTTQ+PQ+L E G    GK+GCTQ
Sbjct: 42  ILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQ 101

Query: 62  PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLE 121
           PRR+AA SVA RV+ E+G KLG  VGYSIRFE   S +T +K MTDG++LRE+ +DP L 
Sbjct: 102 PRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLS 161

Query: 122 SYSVLMVDEAHERTLSTDILLGIFKDLV-RLRSDLKLLISSATLDAEKFSAYFNFAPILR 180
            YSV+++DEAHER+L+TDILLG+ KDL+ R R DLKL+I SATLDAE+FSAYF  AP++ 
Sbjct: 162 GYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIE 221

Query: 181 VPGRRYPVEIHYTKAPESNYI-DAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKE 239
           + GR YPVEI Y    E++YI   AIV  ++IH  + SG ILVFL GQ EIE   E L++
Sbjct: 222 IEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK 281

Query: 240 RIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVV 299
              +LG    +L + P+Y  L  E Q ++F P P G RKVVLATNIAETSLTI GI+YV+
Sbjct: 282 --AELG---DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336

Query: 300 DSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDN 359
           DSG +K K Y+P+TG+  L   PISKASA QRAGR+GRTGPG C+RLY+   +     + 
Sbjct: 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDF-LAFPEF 395

Query: 360 TVPEIQRTNLANVILILKNLGID-DLLNFDFLDSPPQELLRKALELLYALGALNQVGELT 418
           T+PEI RT+L+ ++L LK+LGI  D+  F FLD PP+  ++ AL LL  LGAL+  G+LT
Sbjct: 396 TLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLT 455

Query: 419 KVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGN--SVFYRP-KNKKFLADN 475
            +G+QM+  PLDP L++M++ + +  C  E  TIA++LS  +  S F R  K +K     
Sbjct: 456 PLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQ 515

Query: 476 ARMNFYQGD-----AGDHIALLNVYNSWKEN------DYSKQWCYDNFIQFRSMKHARDI 524
             +   +        GDH+ LL  +                  C       +++  A  I
Sbjct: 516 DLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWI 575

Query: 525 RDQL-------------------TCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQ 565
              L                        +   E   S    + ++ A+ +G  L+ A+LQ
Sbjct: 576 IAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQ 635

Query: 566 KNGS-YWTVKHPQKVHVHPSSG-LAQVPKRWVIYHELVLTTKEYMRQ-----------VT 612
            +G  Y T+     V  HPSS  L  V   W+ Y E + T K Y+R+           + 
Sbjct: 636 LDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREGRGERWPDVQTLI 695

Query: 613 ELKPEWLFEIAPHYYMLKDVEDLRKKMPRVAGRPWLKT 650
           EL   WL E       L  +     K       PW  T
Sbjct: 696 ELLKLWLKEQVKGLRGLDGLTKAAMKQALPDLLPWDLT 733

Length = 845
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA Back     alignment and domain information
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB Back     alignment and domain information
>gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) Back     alignment and domain information
>gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain Back     alignment and domain information
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 650
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 100.0
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 100.0
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 100.0
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 100.0
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 100.0
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 100.0
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
PTZ00110545 helicase; Provisional 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PTZ00424401 helicase 45; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
PRK13767 876 ATP-dependent helicase; Provisional 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
COG1201 814 Lhr Lhr-like helicases [General function predictio 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.98
PRK106891147 transcription-repair coupling factor; Provisional 99.98
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.98
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.98
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.98
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG0354746 consensus DEAD-box like helicase [General function 99.97
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.97
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.97
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.97
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG0346569 consensus RNA helicase [RNA processing and modific 99.97
PHA02558501 uvsW UvsW helicase; Provisional 99.97
COG1205 851 Distinct helicase family with a unique C-terminal 99.97
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.96
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.96
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.96
PRK13766773 Hef nuclease; Provisional 99.96
KOG0347731 consensus RNA helicase [RNA processing and modific 99.96
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.96
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.95
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.95
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.95
KOG4284 980 consensus DEAD box protein [Transcription] 99.95
KOG0334997 consensus RNA helicase [RNA processing and modific 99.94
PRK09401 1176 reverse gyrase; Reviewed 99.94
KOG0327397 consensus Translation initiation factor 4F, helica 99.94
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.94
PRK05580679 primosome assembly protein PriA; Validated 99.93
PRK09694878 helicase Cas3; Provisional 99.93
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.93
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.93
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.93
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.93
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.93
PRK14701 1638 reverse gyrase; Provisional 99.92
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 99.92
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.92
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.92
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.92
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.91
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.91
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.91
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.91
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.9
PRK04914956 ATP-dependent helicase HepA; Validated 99.85
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 99.85
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.84
PF07717114 OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi 99.82
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.81
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.81
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.78
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.78
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 99.78
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.76
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.75
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.75
COG4096875 HsdR Type I site-specific restriction-modification 99.74
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.74
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.73
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 99.73
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.72
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.71
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.7
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.67
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.66
smart0084792 HA2 Helicase associated domain (HA2) Add an annota 99.63
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.62
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 99.62
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.61
KOG1123776 consensus RNA polymerase II transcription initiati 99.58
smart00487201 DEXDc DEAD-like helicases superfamily. 99.54
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.54
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.54
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.53
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.52
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.51
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.51
PRK05298652 excinuclease ABC subunit B; Provisional 99.5
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.47
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.45
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 99.45
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.44
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.44
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.4
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.35
PRK14873665 primosome assembly protein PriA; Provisional 99.3
smart0049082 HELICc helicase superfamily c-terminal domain. 99.27
CHL00122 870 secA preprotein translocase subunit SecA; Validate 99.26
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.25
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 99.24
COG4889 1518 Predicted helicase [General function prediction on 99.19
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 99.14
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.12
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.11
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.05
KOG0387923 consensus Transcription-coupled repair protein CSB 99.02
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 98.9
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.86
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 98.72
COG0610962 Type I site-specific restriction-modification syst 98.53
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 98.45
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.39
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 98.36
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.3
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.28
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.27
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 98.22
KOG1002791 consensus Nucleotide excision repair protein RAD16 98.21
PF1324576 AAA_19: Part of AAA domain 98.18
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 98.17
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.16
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 98.07
PRK10536262 hypothetical protein; Provisional 98.01
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 98.01
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.99
PRK13889988 conjugal transfer relaxase TraA; Provisional 97.97
KOG1803649 consensus DNA helicase [Replication, recombination 97.95
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.94
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 97.93
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.92
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 97.88
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 97.88
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.87
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 97.87
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.84
PRK13826 1102 Dtr system oriT relaxase; Provisional 97.82
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.78
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.73
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 97.72
PRK14974336 cell division protein FtsY; Provisional 97.64
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 97.62
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 97.6
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 97.59
PRK15483 986 type III restriction-modification system StyLTI en 97.57
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 97.57
PRK08181269 transposase; Validated 97.57
PRK06526254 transposase; Provisional 97.54
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 97.54
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 97.47
PRK04296190 thymidine kinase; Provisional 97.46
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 97.43
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 97.43
smart00489289 DEXDc3 DEAD-like helicases superfamily. 97.41
smart00488289 DEXDc2 DEAD-like helicases superfamily. 97.41
KOG4439901 consensus RNA polymerase II transcription terminat 97.4
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 97.39
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 97.37
smart00382148 AAA ATPases associated with a variety of cellular 97.36
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.35
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.35
TIGR00376637 DNA helicase, putative. The gene product may repre 97.33
PRK07952244 DNA replication protein DnaC; Validated 97.31
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 97.28
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 97.27
PF13173128 AAA_14: AAA domain 97.24
PRK08727233 hypothetical protein; Validated 97.21
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 97.15
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 97.12
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 97.11
PF05729166 NACHT: NACHT domain 97.1
PHA03333752 putative ATPase subunit of terminase; Provisional 97.06
PRK06893229 DNA replication initiation factor; Validated 97.05
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 97.04
PRK09183259 transposase/IS protein; Provisional 97.03
PRK10416318 signal recognition particle-docking protein FtsY; 97.0
PRK05642234 DNA replication initiation factor; Validated 96.99
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 96.95
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 96.94
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 96.93
TIGR00064272 ftsY signal recognition particle-docking protein F 96.9
PRK08084235 DNA replication initiation factor; Provisional 96.88
PRK06835329 DNA replication protein DnaC; Validated 96.88
PRK08903227 DnaA regulatory inactivator Hda; Validated 96.82
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 96.82
COG1484254 DnaC DNA replication protein [DNA replication, rec 96.81
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 96.67
PRK09112351 DNA polymerase III subunit delta'; Validated 96.65
KOG2340698 consensus Uncharacterized conserved protein [Funct 96.65
PRK08116268 hypothetical protein; Validated 96.64
PRK00149450 dnaA chromosomal replication initiation protein; R 96.63
PRK12377248 putative replication protein; Provisional 96.62
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 96.6
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 96.59
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 96.58
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 96.56
PRK06921266 hypothetical protein; Provisional 96.53
PRK05707328 DNA polymerase III subunit delta'; Validated 96.49
PF00004132 AAA: ATPase family associated with various cellula 96.49
PHA02533534 17 large terminase protein; Provisional 96.49
PRK12402337 replication factor C small subunit 2; Reviewed 96.48
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.45
PRK08939306 primosomal protein DnaI; Reviewed 96.43
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 96.41
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 96.37
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 96.31
TIGR00362405 DnaA chromosomal replication initiator protein Dna 96.29
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 96.26
PRK00771437 signal recognition particle protein Srp54; Provisi 96.26
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 96.23
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 96.23
PRK13833323 conjugal transfer protein TrbB; Provisional 96.21
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 96.2
cd01124187 KaiC KaiC is a circadian clock protein primarily f 96.19
TIGR00959428 ffh signal recognition particle protein. This mode 96.18
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 96.16
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 96.14
PRK14087450 dnaA chromosomal replication initiation protein; P 96.11
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 96.11
cd03115173 SRP The signal recognition particle (SRP) mediates 96.1
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 96.09
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 96.08
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 96.08
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 96.08
PRK14088440 dnaA chromosomal replication initiation protein; P 96.08
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 96.05
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 96.05
PRK14086617 dnaA chromosomal replication initiation protein; P 96.01
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 96.0
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 95.98
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 95.98
PRK13709 1747 conjugal transfer nickase/helicase TraI; Provision 95.96
PLN03025319 replication factor C subunit; Provisional 95.96
PRK00411394 cdc6 cell division control protein 6; Reviewed 95.96
PRK13851344 type IV secretion system protein VirB11; Provision 95.95
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 95.94
PRK12422445 chromosomal replication initiation protein; Provis 95.94
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 95.94
PRK07471365 DNA polymerase III subunit delta'; Validated 95.93
PRK06067234 flagellar accessory protein FlaH; Validated 95.93
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 95.9
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 95.9
PRK10867433 signal recognition particle protein; Provisional 95.9
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 95.88
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.88
COG2256436 MGS1 ATPase related to the helicase subunit of the 95.86
PRK13894319 conjugal transfer ATPase TrbB; Provisional 95.85
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 95.83
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 95.83
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 95.76
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 95.73
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 95.72
PRK08533230 flagellar accessory protein FlaH; Reviewed 95.69
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 95.68
PHA02544316 44 clamp loader, small subunit; Provisional 95.68
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 95.64
PRK06620214 hypothetical protein; Validated 95.63
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 95.62
PRK11054684 helD DNA helicase IV; Provisional 95.61
KOG18051100 consensus DNA replication helicase [Replication, r 95.6
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 95.6
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 95.59
TIGR02928365 orc1/cdc6 family replication initiation protein. M 95.59
COG3587 985 Restriction endonuclease [Defense mechanisms] 95.58
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 95.57
COG0552340 FtsY Signal recognition particle GTPase [Intracell 95.55
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 95.55
PRK09087226 hypothetical protein; Validated 95.54
KOG2228408 consensus Origin recognition complex, subunit 4 [R 95.53
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 95.51
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 95.51
PRK11823446 DNA repair protein RadA; Provisional 95.51
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 95.51
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 95.5
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 95.43
PRK04195482 replication factor C large subunit; Provisional 95.38
PRK08769319 DNA polymerase III subunit delta'; Validated 95.37
PF1355562 AAA_29: P-loop containing region of AAA domain 95.37
PHA03368738 DNA packaging terminase subunit 1; Provisional 95.28
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 95.24
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 95.23
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 95.23
cd01393226 recA_like RecA is a bacterial enzyme which has rol 95.18
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 95.18
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 95.17
PRK06964342 DNA polymerase III subunit delta'; Validated 95.16
CHL00181287 cbbX CbbX; Provisional 95.16
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 95.12
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 95.1
PTZ001121164 origin recognition complex 1 protein; Provisional 95.08
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 95.08
PRK07940394 DNA polymerase III subunit delta'; Validated 95.06
COG1702348 PhoH Phosphate starvation-inducible protein PhoH, 95.01
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 95.0
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 94.99
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 94.9
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 94.9
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 94.82
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 94.81
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 94.81
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 94.79
PRK00440319 rfc replication factor C small subunit; Reviewed 94.77
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 94.73
PRK13342413 recombination factor protein RarA; Reviewed 94.73
PTZ00293211 thymidine kinase; Provisional 94.71
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 94.7
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 94.7
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 94.7
PRK11773721 uvrD DNA-dependent helicase II; Provisional 94.69
COG3973747 Superfamily I DNA and RNA helicases [General funct 94.66
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 94.66
PRK08699325 DNA polymerase III subunit delta'; Validated 94.66
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 94.66
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 94.65
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 94.65
TIGR02012321 tigrfam_recA protein RecA. This model describes or 94.6
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 94.59
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 94.59
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 94.57
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 94.55
PRK10865857 protein disaggregation chaperone; Provisional 94.53
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 94.53
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 94.5
COG4626546 Phage terminase-like protein, large subunit [Gener 94.43
PRK10436462 hypothetical protein; Provisional 94.3
PRK13341725 recombination factor protein RarA/unknown domain f 94.27
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 94.25
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 94.23
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 94.21
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 94.16
PHA00149331 DNA encapsidation protein 94.16
PRK09354349 recA recombinase A; Provisional 94.15
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 94.14
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 94.13
PRK06871325 DNA polymerase III subunit delta'; Validated 94.12
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 94.11
COG0470325 HolB ATPase involved in DNA replication [DNA repli 94.08
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 94.05
cd03216163 ABC_Carb_Monos_I This family represents the domain 94.05
PRK04841 903 transcriptional regulator MalT; Provisional 94.05
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 94.04
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 94.03
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 93.97
KOG2028554 consensus ATPase related to the helicase subunit o 93.95
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 93.93
KOG2543438 consensus Origin recognition complex, subunit 5 [R 93.92
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 93.92
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 93.92
CHL00176638 ftsH cell division protein; Validated 93.91
COG0593408 DnaA ATPase involved in DNA replication initiation 93.84
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 93.76
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 93.74
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 93.69
COG1126240 GlnQ ABC-type polar amino acid transport system, A 93.65
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 93.6
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 93.54
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 93.51
PRK05973237 replicative DNA helicase; Provisional 93.49
TIGR02533486 type_II_gspE general secretory pathway protein E. 93.49
TIGR03819340 heli_sec_ATPase helicase/secretion neighborhood AT 93.48
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 93.44
PRK03992389 proteasome-activating nucleotidase; Provisional 93.44
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 93.34
PRK08058329 DNA polymerase III subunit delta'; Validated 93.34
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 93.34
TIGR02688449 conserved hypothetical protein TIGR02688. Members 93.33
cd03246173 ABCC_Protease_Secretion This family represents the 93.3
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 93.22
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 93.21
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 93.17
COG1136226 SalX ABC-type antimicrobial peptide transport syst 93.17
TIGR02974329 phageshock_pspF psp operon transcriptional activat 93.15
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 93.14
COG1618179 Predicted nucleotide kinase [Nucleotide transport 93.13
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 93.09
PF03237384 Terminase_6: Terminase-like family; InterPro: IPR0 93.03
PRK13764602 ATPase; Provisional 93.0
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 92.94
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 92.93
PF10443431 RNA12: RNA12 protein; InterPro: IPR018850 Mitochon 92.93
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 92.93
PF02367123 UPF0079: Uncharacterised P-loop hydrolase UPF0079; 92.9
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 92.86
cd03239178 ABC_SMC_head The structural maintenance of chromos 92.83
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 92.79
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 92.76
PRK07399314 DNA polymerase III subunit delta'; Validated 92.71
PF12846304 AAA_10: AAA-like domain 92.63
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 92.55
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 92.55
PF02456369 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR 92.53
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 92.51
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 92.47
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 92.4
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 92.31
PRK13695174 putative NTPase; Provisional 92.29
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 92.28
PRK06090319 DNA polymerase III subunit delta'; Validated 92.24
COG0630312 VirB11 Type IV secretory pathway, VirB11 component 92.23
KOG1969877 consensus DNA replication checkpoint protein CHL12 92.21
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 92.21
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 92.2
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 92.18
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 92.18
PRK05580679 primosome assembly protein PriA; Validated 92.13
cd01394218 radB RadB. The archaeal protein radB shares simila 92.09
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 92.07
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 92.06
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 92.05
cd03213194 ABCG_EPDR ABCG transporters are involved in eye pi 92.05
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 92.04
PRK07993334 DNA polymerase III subunit delta'; Validated 92.01
PF05894333 Podovirus_Gp16: Podovirus DNA encapsidation protei 92.0
COG3598402 RepA RecA-family ATPase [DNA replication, recombin 92.0
COG5008375 PilU Tfp pilus assembly protein, ATPase PilU [Cell 91.96
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 91.94
COG1131293 CcmA ABC-type multidrug transport system, ATPase c 91.94
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 91.93
TIGR02237209 recomb_radB DNA repair and recombination protein R 91.87
COG1134249 TagH ABC-type polysaccharide/polyol phosphate tran 91.85
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 91.85
TIGR00150133 HI0065_YjeE ATPase, YjeE family. Members of this f 91.83
COG3839338 MalK ABC-type sugar transport systems, ATPase comp 91.81
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 91.81
cd03233202 ABC_PDR_domain1 The pleiotropic drug resistance (P 91.79
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 91.79
cd03215182 ABC_Carb_Monos_II This family represents domain II 91.77
COG4987573 CydC ABC-type transport system involved in cytochr 91.69
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 91.65
COG1074 1139 RecB ATP-dependent exoDNAse (exonuclease V) beta s 91.62
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 91.62
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 91.51
CHL00095821 clpC Clp protease ATP binding subunit 91.5
TIGR00595505 priA primosomal protein N'. All proteins in this f 91.5
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 91.49
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 91.48
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 91.44
cd00820107 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC 91.36
PRK09519 790 recA DNA recombination protein RecA; Reviewed 91.35
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 91.32
PRK08760476 replicative DNA helicase; Provisional 91.3
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 91.28
cd01127410 TrwB Bacterial conjugation protein TrwB, ATP bindi 91.22
PRK04328249 hypothetical protein; Provisional 91.22
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 91.21
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 91.18
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 91.18
PHA02244383 ATPase-like protein 91.07
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 91.05
COG2255332 RuvB Holliday junction resolvasome, helicase subun 90.93
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 90.9
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 90.88
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 90.84
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 90.83
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 90.78
KOG2373514 consensus Predicted mitochondrial DNA helicase twi 90.73
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-148  Score=1147.70  Aligned_cols=643  Identities=73%  Similarity=1.161  Sum_probs=629.3

Q ss_pred             hHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCe-EEEecchHHHHHHHHHHHHHHhCC
Q 041899            2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGK-VGCTQPRRVAAISVAARVSREMGV   80 (650)
Q Consensus         2 l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~-ilv~~P~r~la~q~~~~v~~~~~~   80 (650)
                      +.+.|+.||+|+++++++.++.+++++||.|.||||||||+|||+.+.++.++++ |.|+||||++|+++|.||++++|.
T Consensus       257 iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgv  336 (902)
T KOG0923|consen  257 IEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGV  336 (902)
T ss_pred             HHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence            5677999999999999999999999999999999999999999999999998885 999999999999999999999999


Q ss_pred             ccCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899           81 KLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS  160 (650)
Q Consensus        81 ~~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~  160 (650)
                      ++|..|||.++|+++++.+|.|.|||+|||+|.++.+|.|..|++|||||||||++++|++.++++++.+.+|++|++++
T Consensus       337 kLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIs  416 (902)
T KOG0923|consen  337 KLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLIS  416 (902)
T ss_pred             ccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHH
Q 041899          161 SATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKER  240 (650)
Q Consensus       161 SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~  240 (650)
                      |||+|++.|..||+++|++.+|||.|||+++|...|+.+|+++++..+++||.+++.|+||||+++.++|+.+.+.|.+.
T Consensus       417 SAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~  496 (902)
T KOG0923|consen  417 SATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKER  496 (902)
T ss_pred             ccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccccee
Q 041899          241 IRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLV  320 (650)
Q Consensus       241 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~  320 (650)
                      +..++.+..++.++|+|++||.+.|.+||+..++|.+|||+||||||+|+||++|.||||+|++|++.|+|++||++|..
T Consensus       497 ~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v  576 (902)
T KOG0923|consen  497 CRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLV  576 (902)
T ss_pred             HHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHHHHHH
Q 041899          321 YPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRK  400 (650)
Q Consensus       321 ~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~  400 (650)
                      .|+|++++.||+|||||+|||+|||||+...|.+.+.+.+.|||+|++|.+++|.|+++||.|+.+|+|+||||.+++..
T Consensus       577 ~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~  656 (902)
T KOG0923|consen  577 TPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLK  656 (902)
T ss_pred             eeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHHHHHHHhcc
Q 041899          401 ALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNF  480 (650)
Q Consensus       401 a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~~~  480 (650)
                      |++.|+.+||++..|+||.+|+.|++||+||+++|||+.+..++|.+++++||||||++.++|++|+++...++++++.|
T Consensus       657 aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f  736 (902)
T KOG0923|consen  657 ALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNF  736 (902)
T ss_pred             HHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCcccHHHHHHHHHhccccc
Q 041899          481 YQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLH  560 (650)
Q Consensus       481 ~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  560 (650)
                      ..+ .|||+++|++|+.|..++++.+||.+||+++++|++|+++|.||..++.+.++...++..+...|++++.+|||+|
T Consensus       737 ~~~-~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h  815 (902)
T KOG0923|consen  737 EEP-VGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYH  815 (902)
T ss_pred             CCC-CcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhcccccc
Confidence            875 6999999999999999999999999999999999999999999999999999988888878889999999999999


Q ss_pred             ceEEccCCCEEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehhccccCHHHHHhHcCccceeeeeccccc-cc
Q 041899          561 TARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRK-KM  639 (650)
Q Consensus       561 va~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~~~~~~~~~~~~~~~-~~  639 (650)
                      +|++..+|+|+++...+.|++||.|+++...|.||+|++++.|+|.|||.++.+.++||.+++||||.-+++++..+ |+
T Consensus       816 ~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyyk~kdled~~~kk~  895 (902)
T KOG0923|consen  816 TAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKDLEDATNKKM  895 (902)
T ss_pred             ceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhhhhhhccccccccc
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999988877 59


Q ss_pred             ccccCC
Q 041899          640 PRVAGR  645 (650)
Q Consensus       640 ~~~~~~  645 (650)
                      |+..++
T Consensus       896 ~k~~g~  901 (902)
T KOG0923|consen  896 PKKIGK  901 (902)
T ss_pred             cccccc
Confidence            998875

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO) Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13555 AAA_29: P-loop containing region of AAA domain Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA00149 DNA encapsidation protein Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses Back     alignment and domain information
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>TIGR00150 HI0065_YjeE ATPase, YjeE family Back     alignment and domain information
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query650
3kx2_B767 Crystal Structure Of Prp43p In Complex With Adp Len 1e-175
2xau_A773 Crystal Structure Of The Prp43p Deah-Box Rna Helica 1e-175
3i4u_A270 Crystal Structure Analysis Of A Helicase Associated 1e-59
3llm_A235 Crystal Structure Analysis Of A Rna Helicase Length 6e-25
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 Back     alignment and structure 
Iteration: 1

 Score =  610 bits (1574), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 324/662 (48%), Positives = 442/662 (66%), Gaps = 29/662 (4%)
Query: 4   KERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYL--HEAGYTKHGKVGCTQ 61
           K R+ LP++  R++ L+  Q NQ++V VGETGSGKTTQIPQ++   E  + ++ +V CTQ
Sbjct: 88  KIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147
Query: 62  PXXXXXXXXXXXXXXEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLE 121
           P              EM VKLG EVGYSIRFE+ TS KT+LKYMTDGM+LRE + D  L 
Sbjct: 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLS 207
Query: 122 SYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRV 181
            YS +++DEAHERTL+TDIL+G+ K +V+ R DLK++I SATLDAEKF  YFN AP+L V
Sbjct: 208 RYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAV 267
Query: 182 PGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQXXXXXXXXXXXXR- 240
           PGR YPVE++YT   + +Y+D+AI T L+IHAT+ +GDIL+FLTG+              
Sbjct: 268 PGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG 327
Query: 241 ---IRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG-----ARKVVLATNIAETSLTI 292
              +R+ G   G L V P+Y +LP   Q +IF P P+       RKVV++TNIAETSLTI
Sbjct: 328 DQLVREEGC--GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385
Query: 293 DGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352
           DGI YVVD G+SK K YNP+  +ESLLV PISKASA QRAGR+GRT PGKCFRLYT  ++
Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445
Query: 353 QEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQXXXXXXXXXXXXXGALN 412
           Q+++ + + PEI R+NL++ +L LK LGIDDL++FDF+D P                 L+
Sbjct: 446 QKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLD 505
Query: 413 QVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFL 472
             G LT +GR  ++FPLDPML+ M++ S +F+CS EI+TI A+LSV N VF RP   K  
Sbjct: 506 DEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKR 564
Query: 473 ADNARMNFYQGDAGDHIALLNVYNSWKENDYSK----QWCYDNFIQFRSMKHARDIRDQL 528
           AD+A+  F   D GDHI LLNVY+++K ++  +    +WC D+++ +RS+  A +IR QL
Sbjct: 565 ADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQL 623
Query: 529 TCLVERVGIELTS----SLCNLEAMKKAIISGFLLHTARLQKNGS--YWTVKHPQKVHVH 582
             L+ R  +EL +    S    + ++KA+ SGF +  A+ +++G+  Y TVK  Q V +H
Sbjct: 624 ERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAK-KRSGAKGYITVKDNQDVLIH 682
Query: 583 PSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVE--DLRKKMP 640
           PS+ L      WVIY+E VLT+K Y+R VT ++PEWL EIAP YY L + +  D++  + 
Sbjct: 683 PSTVLGH-DAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLE 741
Query: 641 RV 642
           R+
Sbjct: 742 RI 743
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 Back     alignment and structure
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270 Back     alignment and structure
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query650
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 0.0
3i4u_A270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 1e-141
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 1e-126
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 1e-125
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 1e-114
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 1e-113
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 1e-108
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 1e-103
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 2e-95
1yks_A440 Genome polyprotein [contains: flavivirin protease 2e-95
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 Back     alignment and structure
 Score = 1116 bits (2889), Expect = 0.0
 Identities = 339/663 (51%), Positives = 460/663 (69%), Gaps = 21/663 (3%)

Query: 2   LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYL--HEAGYTKHGKVGC 59
           + K R+ LP++  R++ L+  Q NQ++V VGETGSGKTTQIPQ++   E  + ++ +V C
Sbjct: 86  ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145

Query: 60  TQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPK 119
           TQPRRVAA+SVA RV+ EM VKLG EVGYSIRFE+ TS KT+LKYMTDGM+LRE + D  
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205

Query: 120 LESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPIL 179
           L  YS +++DEAHERTL+TDIL+G+ K +V+ R DLK++I SATLDAEKF  YFN AP+L
Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLL 265

Query: 180 RVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKE 239
            VPGR YPVE++YT   + +Y+D+AI T L+IHAT+ +GDIL+FLTG++EIE     +  
Sbjct: 266 AVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL 325

Query: 240 RIRKLGTK--IGELIVCPVYANLPTELQAKIFVPTPDG-----ARKVVLATNIAETSLTI 292
              +L  +   G L V P+Y +LP   Q +IF P P+       RKVV++TNIAETSLTI
Sbjct: 326 EGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385

Query: 293 DGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352
           DGI YVVD G+SK K YNP+  +ESLLV PISKASA QRAGR+GRT PGKCFRLYT  ++
Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445

Query: 353 QEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALN 412
           Q+++ + + PEI R+NL++ +L LK LGIDDL++FDF+D P  E + +ALE L  L  L+
Sbjct: 446 QKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLD 505

Query: 413 QVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFL 472
             G LT +GR  ++FPLDPML+ M++ S +F+CS EI+TI A+LSV N VF RP   K  
Sbjct: 506 DEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKR 564

Query: 473 ADNARMNFYQGDAGDHIALLNVYNSWKENDYS----KQWCYDNFIQFRSMKHARDIRDQL 528
           AD+A+  F   D GDHI LLNVY+++K ++       +WC D+++ +RS+  A +IR QL
Sbjct: 565 ADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQL 623

Query: 529 TCLVERVGIELTSS----LCNLEAMKKAIISGFLLHTARLQKNG-SYWTVKHPQKVHVHP 583
             L+ R  +EL ++        + ++KA+ SGF +  A+ +     Y TVK  Q V +HP
Sbjct: 624 ERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHP 683

Query: 584 SSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKMPRVA 643
           S+ L    + WVIY+E VLT+K Y+R VT ++PEWL EIAP YY L + +    K+    
Sbjct: 684 STVLGHDAE-WVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLER 742

Query: 644 GRP 646
            + 
Sbjct: 743 IKE 745
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query650
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
3i4u_A270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 100.0
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
1yks_A440 Genome polyprotein [contains: flavivirin protease 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.98
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.98
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.97
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.97
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.97
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.97
3h1t_A590 Type I site-specific restriction-modification syst 99.96
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.96
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 99.95
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.94
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.94
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.93
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.91
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.91
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.91
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.9
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.87
3jux_A822 Protein translocase subunit SECA; protein transloc 99.87
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.86
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.86
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.83
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.82
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.81
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.81
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.81
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.81
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.8
3bor_A237 Human initiation factor 4A-II; translation initiat 99.8
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.8
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.8
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.8
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.8
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.79
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.79
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.79
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.79
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.78
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.78
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.78
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.77
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.76
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.75
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.73
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.57
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.69
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.67
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.63
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.59
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.49
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.33
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.16
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.4
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 98.17
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 98.1
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 98.05
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 97.73
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 97.71
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 97.44
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 97.35
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.34
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 97.33
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 97.31
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 97.22
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.19
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.17
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 97.12
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 97.0
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 96.96
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 96.94
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 96.85
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 96.8
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 96.75
2kjq_A149 DNAA-related protein; solution structure, NESG, st 96.74
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 96.69
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 96.67
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 96.65
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 96.57
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 96.54
2chg_A226 Replication factor C small subunit; DNA-binding pr 96.49
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 96.43
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 96.34
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 96.3
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 96.18
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 96.04
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 96.04
3bos_A242 Putative DNA replication factor; P-loop containing 96.03
2qgz_A308 Helicase loader, putative primosome component; str 95.98
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 95.94
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 95.91
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 95.89
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 95.88
2v1u_A387 Cell division control protein 6 homolog; DNA repli 95.86
2gno_A305 DNA polymerase III, gamma subunit-related protein; 95.77
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 95.75
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 95.68
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 95.68
1vma_A306 Cell division protein FTSY; TM0570, structural gen 95.67
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 95.61
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 95.6
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 95.58
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 95.56
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 95.53
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 95.46
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 95.4
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 95.37
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 95.32
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 95.27
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 95.23
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 95.18
1ojl_A304 Transcriptional regulatory protein ZRAR; response 95.16
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 95.13
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 95.08
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 95.06
2fna_A357 Conserved hypothetical protein; structural genomic 95.01
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 94.84
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 94.72
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 94.71
2r6a_A454 DNAB helicase, replicative helicase; replication, 94.68
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 94.62
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 94.54
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 94.45
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 94.32
3pvs_A447 Replication-associated recombination protein A; ma 94.23
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 94.2
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 94.06
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 93.85
1p9r_A418 General secretion pathway protein E; bacterial typ 93.75
2eyu_A261 Twitching motility protein PILT; pilus retraction 93.72
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 93.68
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 93.62
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 93.59
2chq_A319 Replication factor C small subunit; DNA-binding pr 93.4
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 93.4
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 93.26
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 93.13
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 93.08
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 93.01
2ewv_A372 Twitching motility protein PILT; pilus retraction 92.79
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 92.72
3co5_A143 Putative two-component system transcriptional RES 92.6
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 92.54
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 92.52
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 92.47
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 92.47
2gza_A361 Type IV secretion system protein VIRB11; ATPase, h 92.45
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 92.41
2xxa_A433 Signal recognition particle protein; protein trans 92.37
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 92.25
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 92.2
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 92.11
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 92.05
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 92.05
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 91.97
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 91.94
2oap_1511 GSPE-2, type II secretion system protein; hexameri 91.88
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 91.82
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 91.74
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 91.72
3cmu_A2050 Protein RECA, recombinase A; homologous recombinat 91.72
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 91.58
2cvh_A220 DNA repair and recombination protein RADB; filamen 91.5
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 91.5
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 91.45
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 91.37
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 91.24
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 91.2
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 91.14
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 91.1
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 91.07
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 91.06
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 91.06
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 90.86
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 90.86
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 90.74
3vaa_A199 Shikimate kinase, SK; structural genomics, center 90.71
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 90.45
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 90.3
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 90.21
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 89.95
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 89.86
2l8b_A189 Protein TRAI, DNA helicase I; RECD, hydrolase; NMR 89.74
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 89.58
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 89.57
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 89.51
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 89.43
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 89.21
1e9r_A437 Conjugal transfer protein TRWB; coupling protein, 89.09
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 89.0
2z43_A324 DNA repair and recombination protein RADA; archaea 88.98
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 88.97
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 88.92
1kag_A173 SKI, shikimate kinase I; transferase, structural g 88.9
4ag6_A392 VIRB4 ATPase, type IV secretory pathway VIRB4 comp 88.9
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 88.87
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 88.86
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 88.79
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 88.74
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 88.73
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 88.67
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 88.61
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 88.57
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 88.53
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 88.51
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 88.44
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 88.41
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 88.16
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 88.14
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 88.04
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 88.04
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 88.03
1nij_A318 Hypothetical protein YJIA; structural genomics, P- 88.03
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 88.02
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 87.96
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 87.88
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 87.86
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 87.76
2og2_A359 Putative signal recognition particle receptor; nuc 87.75
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 87.69
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 87.62
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 87.57
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 87.54
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 87.51
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 87.47
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 87.46
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 87.41
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 87.37
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 87.35
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 87.27
1xjc_A169 MOBB protein homolog; structural genomics, midwest 87.24
4a74_A231 DNA repair and recombination protein RADA; hydrola 87.17
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 87.07
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 87.0
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 86.97
1c9k_A180 COBU, adenosylcobinamide kinase; alpha/beta struct 86.91
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 86.91
3tlx_A243 Adenylate kinase 2; structural genomics, structura 86.91
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 86.87
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 86.79
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 86.73
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 86.72
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 86.7
2r44_A331 Uncharacterized protein; putative ATPase, structur 86.7
1sgw_A214 Putative ABC transporter; structural genomics, P p 86.63
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 86.6
1f2t_A149 RAD50 ABC-ATPase; DNA double-strand break repair, 86.5
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 86.5
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 86.49
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 86.39
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 86.25
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 86.24
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 86.18
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 86.14
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 86.14
3tqc_A321 Pantothenate kinase; biosynthesis of cofactors, pr 86.08
3io5_A333 Recombination and repair protein; storage dimer, i 86.07
3kta_A182 Chromosome segregation protein SMC; structural mai 86.01
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 85.97
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 85.92
3nh6_A306 ATP-binding cassette SUB-family B member 6, mitoc; 85.92
1b0u_A262 Histidine permease; ABC transporter, transport pro 85.91
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 85.79
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 85.77
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 85.65
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 85.65
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 85.64
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 85.58
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 85.57
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 85.56
1u94_A356 RECA protein, recombinase A; homologous recombinat 85.54
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 85.52
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 85.45
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 85.44
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 85.43
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 85.39
1g6h_A257 High-affinity branched-chain amino acid transport 85.34
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 85.28
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 85.23
1ji0_A240 ABC transporter; ATP binding protein, structural g 85.13
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 85.09
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 85.07
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 85.06
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 85.05
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 85.03
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 85.03
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 84.98
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 84.89
2ghi_A260 Transport protein; multidrug resistance protein, M 84.84
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 84.82
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 84.79
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 84.76
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 84.74
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 84.7
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 84.67
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 84.64
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 84.58
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 84.51
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 84.38
3cmw_A1706 Protein RECA, recombinase A; homologous recombinat 84.37
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 84.27
1w36_B 1180 RECB, exodeoxyribonuclease V beta chain; recombina 84.26
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 84.22
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 84.21
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 84.16
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 84.16
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 84.15
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 84.05
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 84.02
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 83.96
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 83.73
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 83.7
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 83.63
1via_A175 Shikimate kinase; structural genomics, transferase 83.53
3qf7_A365 RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. 83.42
3eph_A409 TRNA isopentenyltransferase; transferase, alternat 83.34
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 83.34
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 83.29
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 83.2
1gtv_A214 TMK, thymidylate kinase; transferase, transferase 83.15
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 83.1
2vli_A183 Antibiotic resistance protein; transferase, tunica 83.07
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 83.07
1tue_A212 Replication protein E1; helicase, replication, E1E 83.06
1xp8_A366 RECA protein, recombinase A; recombination, radior 83.06
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 83.05
2nq2_C253 Hypothetical ABC transporter ATP-binding protein H 82.73
2bbs_A290 Cystic fibrosis transmembrane conductance regulato 82.55
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 82.5
2vp4_A230 Deoxynucleoside kinase; ATP-binding, DNA synthesis 82.41
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 82.11
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 82.02
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 82.0
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 81.74
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 81.72
3auy_A371 DNA double-strand break repair RAD50 ATPase; DNA r 81.67
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 81.62
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 81.56
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 81.54
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 81.45
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 81.34
2pjz_A263 Hypothetical protein ST1066; ATP binding protein, 81.02
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 81.01
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 81.01
3qks_A203 DNA double-strand break repair RAD50 ATPase; RECA- 80.93
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 80.87
1z47_A355 CYSA, putative ABC-transporter ATP-binding protein 80.85
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 80.7
3hjh_A483 Transcription-repair-coupling factor; MFD, mutatio 80.67
3gd7_A390 Fusion complex of cystic fibrosis transmembrane co 80.27
2yyz_A359 Sugar ABC transporter, ATP-binding protein; sugar 80.25
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 80.25
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 80.22
3b5x_A582 Lipid A export ATP-binding/permease protein MSBA; 80.15
2qm8_A337 GTPase/ATPase; G protein, G3E, metallochaperone, c 80.03
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 80.01
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
Probab=100.00  E-value=8e-109  Score=947.52  Aligned_cols=629  Identities=53%  Similarity=0.881  Sum_probs=582.1

Q ss_pred             hHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC--CCeEEEecchHHHHHHHHHHHHHHhC
Q 041899            2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK--HGKVGCTQPRRVAAISVAARVSREMG   79 (650)
Q Consensus         2 l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~P~r~la~q~~~~v~~~~~   79 (650)
                      +++.|..+|++.+|+++...+.++++++++||||||||+++|+++.......  +.+++|++|+|+++.|++++++++++
T Consensus        86 ~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~  165 (773)
T 2xau_A           86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMD  165 (773)
T ss_dssp             HHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhC
Confidence            4567789999999999999999999999999999999999999988765443  45799999999999999999999999


Q ss_pred             CccCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899           80 VKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI  159 (650)
Q Consensus        80 ~~~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~  159 (650)
                      ..+|..+||.++++......++|+++|+|++++.+..++.+.++++|||||+|+|+++.+.++.+++.+...+++.++|+
T Consensus       166 ~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl  245 (773)
T 2xau_A          166 VKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIII  245 (773)
T ss_dssp             CCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEE
Confidence            99999999999998888889999999999999999999999999999999999999999999999999988888999999


Q ss_pred             EccCCChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHH
Q 041899          160 SSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKE  239 (650)
Q Consensus       160 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~  239 (650)
                      ||||++.+.+.+|+++++++.++++.+|++++|...+..++....+..+.+++...+++++||||+++++++.+++.|.+
T Consensus       246 ~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~  325 (773)
T 2xau_A          246 MSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL  325 (773)
T ss_dssp             EESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHH
T ss_pred             EeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888899888888888888777789999999999999999999987


Q ss_pred             HHHhh--cCCCCceEEEeecCCCCHHHHhhhcCCCC-----CCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCC
Q 041899          240 RIRKL--GTKIGELIVCPVYANLPTELQAKIFVPTP-----DGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPK  312 (650)
Q Consensus       240 ~~~~~--~~~~~~~~v~~lh~~l~~~~r~~i~~~~~-----~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~  312 (650)
                      ....+  .....++.+.++||+|+.++|.++++.|+     +|.++||||||++|+|||||+|++|||+|+.|.+.||+.
T Consensus       326 ~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~  405 (773)
T 2xau_A          326 EGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPR  405 (773)
T ss_dssp             HHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETT
T ss_pred             HHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccc
Confidence            54333  12234788999999999999999999999     999999999999999999999999999999999999999


Q ss_pred             CCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCC
Q 041899          313 TGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDS  392 (650)
Q Consensus       313 ~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~  392 (650)
                      +|++.|...|+|.++|.||+|||||.++|.||+||+++++...+.++..|||++.+|.+++|.++.+|+.++..|+|++|
T Consensus       406 ~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~  485 (773)
T 2xau_A          406 IRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDP  485 (773)
T ss_dssp             TTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSC
T ss_pred             cCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCC
Confidence            99999999999999999999999999999999999999986679999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHH
Q 041899          393 PPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFL  472 (650)
Q Consensus       393 p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~  472 (650)
                      |+.+++..|++.|..+||||.+|++|++|+.|+.||+||++||||+.|..++|++++++|||+|++ +++|++|.+.+.+
T Consensus       486 p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~-~~~f~~~~~~~~~  564 (773)
T 2xau_A          486 PAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSV-PNVFIRPTKDKKR  564 (773)
T ss_dssp             CCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTS-CCCBCCCTTCHHH
T ss_pred             CcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhccc-CCcccCChHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998 7899999999999


Q ss_pred             HHHHHhcccCCCCCCHHHHHHHHHHHhhcC---cc-hhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCc----c
Q 041899          473 ADNARMNFYQGDAGDHIALLNVYNSWKEND---YS-KQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSL----C  544 (650)
Q Consensus       473 ~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~---~~-~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~----~  544 (650)
                      ++.+++.|... .|||++++|+|++|.+..   .+ .+||++||||+++|+++.++|.||.+++++.+++..++.    +
T Consensus       565 ~~~~~~~f~~~-~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~  643 (773)
T 2xau_A          565 ADDAKNIFAHP-DGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPK  643 (773)
T ss_dssp             HHHHHHTTCCT-TBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTT
T ss_pred             HHHHHHhccCC-CCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchh
Confidence            99999999864 599999999999997654   44 789999999999999999999999999999888765432    4


Q ss_pred             cHHHHHHHHHhcccccceEEccCCC-EEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehhccccCHHHHHhHc
Q 041899          545 NLEAMKKAIISGFLLHTARLQKNGS-YWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIA  623 (650)
Q Consensus       545 ~~~~~~~~~~~g~~~~va~~~~~~~-y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~  623 (650)
                      +++.+++||++|||+|||++.++|. |.++.+++.|+|||+|+|. ..|+||||+|++.|++.|||++|+|+|+||.+++
T Consensus       644 ~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~-~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~  722 (773)
T 2xau_A          644 YFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG-HDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIA  722 (773)
T ss_dssp             HHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCC-TTCSEEEEEEEEESSSEEEEEEEECCHHHHHHHC
T ss_pred             hHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccC-CCCCEEEEEEeeccchhheeecccCCHHHHHHHH
Confidence            5678999999999999999988775 9999999999999999995 3599999999999999999999999999999999


Q ss_pred             Cccceeeeec
Q 041899          624 PHYYMLKDVE  633 (650)
Q Consensus       624 ~~~~~~~~~~  633 (650)
                      |++|...+..
T Consensus       723 ~~~~~~~~~~  732 (773)
T 2xau_A          723 PAYYDLSNFQ  732 (773)
T ss_dssp             TTTSCGGGCC
T ss_pred             HHheeeccCC
Confidence            9999766654
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli} Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Back     alignment and structure
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Back     alignment and structure
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A Back     alignment and structure
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Back     alignment and structure
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Back     alignment and structure
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 650
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 3e-72
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 1e-50
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 1e-27
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 4e-14
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 4e-05
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 1e-04
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 6e-04
d1lkxa_684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 0.002
d1mv5a_242 c.37.1.12 (A:) Multidrug resistance ABC transporte 0.003
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 0.003
d1sgwa_200 c.37.1.12 (A:) Putative ABC transporter PF0895 {Py 0.004
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score =  233 bits (595), Expect = 3e-72
 Identities = 54/344 (15%), Positives = 92/344 (26%), Gaps = 56/344 (16%)

Query: 181 VPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKER 240
            P     +E   T  P          T  +            FL        +   L++ 
Sbjct: 6   FPHSNGEIEDVQTDIP-----SEPWNTGHDW-ILADKRPTAWFLPSIRAANVMAASLRKA 59

Query: 241 IRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVD 300
            +          V  +           I           +LAT+IAE    +  ++ V+D
Sbjct: 60  GKS---------VVVLNRKTFEREYPTIK----QKKPDFILATDIAEMGANLC-VERVLD 105

Query: 301 SGYS-KMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDN 359
              + K    +    +       IS +SA QR GR GR  P +    Y    Y E   +N
Sbjct: 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN-PNRDGDSYY---YSEPTSEN 161

Query: 360 TVPEIQRTN----LANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVG 415
               +        L N+ +    +     +        P E+  +  +       +    
Sbjct: 162 NAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCD 221

Query: 416 ELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADN 475
               +  Q+A+  L     K                           F  P+  + L D+
Sbjct: 222 LPVWLSWQVAKAGLKTNDRKW-------------------------CFEGPEEHEILNDS 256

Query: 476 ARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMK 519
                 +   G    L   +    E   S Q     FI+F   +
Sbjct: 257 GETVKCRAPGGAKKPLRPRW--CDERVSSDQSALSEFIKFAEGR 298
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query650
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.95
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.84
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.83
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.82
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.82
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.82
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.81
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.81
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.81
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.8
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.8
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.79
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.79
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.79
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.78
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.78
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.78
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.77
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.77
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.76
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.74
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.74
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.71
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.71
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.71
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.69
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.69
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.63
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.6
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.57
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.56
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.55
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.52
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.45
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.44
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.42
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.24
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.8
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.79
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.62
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.48
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.38
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 98.27
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 98.1
d1okkd2207 GTPase domain of the signal recognition particle r 97.82
d2qy9a2211 GTPase domain of the signal recognition particle r 97.74
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.63
d1vmaa2213 GTPase domain of the signal recognition particle r 97.62
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 97.57
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.55
d1ls1a2207 GTPase domain of the signal sequence recognition p 97.46
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 97.2
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 97.15
d1j8yf2211 GTPase domain of the signal sequence recognition p 97.09
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 96.56
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 96.49
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 96.49
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 96.44
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 96.25
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 96.2
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 96.09
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 95.96
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 95.89
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 95.6
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 95.48
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 95.34
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 95.26
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 95.26
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 95.25
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 95.24
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 94.97
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 94.88
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 94.75
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 94.67
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 94.27
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 94.25
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 94.14
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 93.83
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 93.7
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 93.3
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 93.12
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 93.11
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 93.09
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 93.03
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 93.03
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 92.94
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 92.85
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 92.84
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 92.8
d1w36b1485 Exodeoxyribonuclease V beta chain (RecB), N-termin 92.76
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 92.76
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 92.68
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 92.61
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 91.96
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 91.95
d2p6ra185 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 91.77
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 91.75
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 91.74
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 91.71
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 91.7
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 91.63
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 91.56
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 91.45
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 91.43
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 91.39
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 91.35
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 91.18
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 91.11
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 91.04
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 91.03
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 90.97
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 90.95
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 90.87
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 90.86
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 90.73
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 90.52
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 90.41
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 90.34
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 90.22
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 90.21
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 90.12
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 90.04
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 90.04
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 90.01
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 89.95
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 89.9
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 89.8
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 89.69
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 89.65
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 89.53
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 89.52
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 89.46
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 89.28
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 89.11
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 88.93
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 88.92
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 88.89
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 88.82
d2hyda1255 Putative multidrug export ATP-binding/permease pro 88.46
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 88.1
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 87.88
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 87.79
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 87.46
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 87.44
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 87.4
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 87.33
d2awna2232 Maltose transport protein MalK, N-terminal domain 87.21
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 87.19
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 87.16
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 86.8
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 86.8
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 86.74
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 86.13
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 85.99
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 85.84
d1g2912240 Maltose transport protein MalK, N-terminal domain 85.79
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 85.59
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 85.51
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 85.11
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 85.05
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 84.69
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 84.59
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 84.52
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 84.32
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 84.24
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 83.66
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 83.29
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 82.8
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 82.47
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 82.46
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 81.89
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 81.82
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 81.68
d1svma_362 Papillomavirus large T antigen helicase domain {Si 81.04
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 80.95
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 80.86
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=6.6e-36  Score=306.37  Aligned_cols=294  Identities=16%  Similarity=0.187  Sum_probs=209.9

Q ss_pred             HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899           22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV  101 (650)
Q Consensus        22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~  101 (650)
                      ++++++++|.||||||||+.+...+.+....++.+++|++|+|+||.|++++++. ++.  + ..+  ..........+.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~-~~~--~-~~~--~~~~~~~~~~~~   79 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRG-LPI--R-YQT--PAIRAEHTGREI   79 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTT-SCC--B-CCC----------CCCS
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhc-CCc--c-eee--eEEeecccCccc
Confidence            5688999999999999996544444443344567899999999999999987743 221  1 111  112334456788


Q ss_pred             EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCCCCcccc
Q 041899          102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRV  181 (650)
Q Consensus       102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~  181 (650)
                      ++++|++.|...+..+..+.++++|||||+|...........+++... .+++.++++||||++...          ...
T Consensus        80 i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~-~~~~~~~v~~SAT~~~~~----------~~~  148 (305)
T d2bmfa2          80 VDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRV-EMGEAAGIFMTATPPGSR----------DPF  148 (305)
T ss_dssp             EEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECSSCTTCC----------CSS
T ss_pred             cccCCcHHHHHHHhcCccccceeEEEeeeeeecchhhHHHHHHHHHhh-ccccceEEEeecCCCcce----------eee
Confidence            999999999998888888999999999999966555555555555543 346789999999984321          111


Q ss_pred             CCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCC
Q 041899          182 PGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLP  261 (650)
Q Consensus       182 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~  261 (650)
                      .....++.......+.......     .. .....++++||||+++++++.+++.|++.         +..+..+||+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~l~~~~~  213 (305)
T d2bmfa2         149 PQSNAPIMDEEREIPERSWNSG-----HE-WVTDFKGKTVWFVPSIKAGNDIAACLRKN---------GKKVIQLSRKTF  213 (305)
T ss_dssp             CCCSSCEEEEECCCCCSCCSSC-----CH-HHHSSCSCEEEECSCHHHHHHHHHHHHHH---------TCCCEECCTTCH
T ss_pred             cccCCcceEEEEeccHHHHHHH-----HH-HHHhhCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeCCcCh
Confidence            2222333332222221111100     01 11234789999999999999999999876         566888999997


Q ss_pred             HHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccce--eccCCCCcccceeeecCHHhHHhhccccCCCC
Q 041899          262 TELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMK--WYNPKTGMESLLVYPISKASAMQRAGRSGRTG  339 (650)
Q Consensus       262 ~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~--~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~  339 (650)
                      .+.+.    .+++|.++++|||+++++|+|++ ++.|||+|.....  .||+.++...+...|+|.++|.||+||+||.|
T Consensus       214 ~~~~~----~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~  288 (305)
T d2bmfa2         214 DSEYI----KTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNP  288 (305)
T ss_dssp             HHHGG----GGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSS
T ss_pred             HHHHh----hhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCC
Confidence            65544    45688999999999999999995 8999999876544  48888888888899999999999999999999


Q ss_pred             CcEEE-EeeCcccc
Q 041899          340 PGKCF-RLYTINSY  352 (650)
Q Consensus       340 ~G~~~-~l~~~~~~  352 (650)
                      .|..+ .+|..+..
T Consensus       289 ~~~~~~~~~~~~~~  302 (305)
T d2bmfa2         289 KNENDQYIYMGEPL  302 (305)
T ss_dssp             SCCCEEEEECSCCC
T ss_pred             CCceEEEEECCCCC
Confidence            76544 56665544
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure