Citrus Sinensis ID: 042034

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGN
ccHHHHHHHHHHHHHcccccEEEEEEcccccHHHHccccHHHHHHccccHHHHcccccccccccccccEEEEEcccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHccccccccEEEEEcccEEEcccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccccEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccc
ccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHcccEEEEEccccccccccccccEEEEEEcccHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccEEEEccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHccccccEEEccccccccccHcEEEEcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYflrpssenIQHLRRQLanprfgeyhLFFSNMLKDTQihiladsdEQEVVQQVQEFYADfvavepyhftlnipsnhlymlpavvdpsslqhFCDRVVDGIAAVFLALkrrpviryqRTSDIAKRIAQETTKLMYQQesglfdfrrteisplllildrrddpvtpllnQWTYQAMVHELIGiqdnkvdlrsigdfpkdqQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVENYPeykkmhgnvsKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLlnnenvsdidRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQagvdkrtgdlygn
MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYsqsellqkeVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFlalkrrpviryqrtsdiAKRIAQETTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVENYPEYKkmhgnvskHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLnnenvsdidRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLlkqagvdkrtgdlygn
MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDeqevvqqvqeFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPlllildrrddPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGN
**LVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGV**********
MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYK*KESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQ**************PLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNKV******************SEQDTFFKANMYENFGDIGMNIKRMV**********************VENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQ*************
MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLML***********GGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGN
MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGV**********
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MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
O49048 569 Vacuolar protein sorting- yes no 1.0 0.789 0.871 0.0
P97390 570 Vacuolar protein sorting- yes no 0.971 0.764 0.483 1e-115
O08700 570 Vacuolar protein sorting- yes no 0.971 0.764 0.483 1e-114
Q9NRW7 570 Vacuolar protein sorting- yes no 0.966 0.761 0.481 1e-112
Q54GE3 563 Vacuolar protein sorting- yes no 0.966 0.770 0.458 1e-112
Q09805 558 Vacuolar protein sorting- yes no 0.968 0.779 0.388 9e-87
P38932 577 Vacuolar protein sorting- yes no 0.893 0.694 0.363 3e-78
Q54QC8 598 Protein transport protein no no 0.850 0.638 0.254 2e-34
Q9C5P7 673 Protein transport Sec1a O no no 0.855 0.570 0.255 2e-30
Q5VNU3 659 Probable protein transpor no no 0.857 0.584 0.251 3e-27
>sp|O49048|VPS45_ARATH Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2 Back     alignment and function desciption
 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/450 (87%), Positives = 425/450 (94%), Gaps = 1/450 (0%)

Query: 1   MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKS 60
           MVLVT+ RDYINRMLQDISGMKVLILDS+TVS VS+VYSQSELLQKEVFLVE++DSI  S
Sbjct: 1   MVLVTSVRDYINRMLQDISGMKVLILDSETVSNVSIVYSQSELLQKEVFLVEMIDSISVS 60

Query: 61  KESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVV 120
           KESMSHLKAVYF+RP+S+NIQ LR QLANPRFGEYHLFFSN+LKDTQIHILADSDEQEVV
Sbjct: 61  KESMSHLKAVYFIRPTSDNIQKLRYQLANPRFGEYHLFFSNLLKDTQIHILADSDEQEVV 120

Query: 121 QQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRR 180
           QQVQE+YADFV+ +PYHFTLN+ SNHLYM+PAVVDPS LQ F DRVVDGIAAVFLALKRR
Sbjct: 121 QQVQEYYADFVSGDPYHFTLNMASNHLYMIPAVVDPSGLQRFSDRVVDGIAAVFLALKRR 180

Query: 181 PVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQWT 240
           PVIRYQRTSD AKRIA ET KLMYQ ES LFDFRRTE SPLLL++DRRDDPVTPLLNQWT
Sbjct: 181 PVIRYQRTSDTAKRIAHETAKLMYQHESALFDFRRTESSPLLLVIDRRDDPVTPLLNQWT 240

Query: 241 YQAMVHELIGIQDNKVDLRSIGDFPKDQQ-EVVLSSEQDTFFKANMYENFGDIGMNIKRM 299
           YQAMVHELIG+QDNKVDL+SIG  PKDQQ EVVLSSEQD FFK+NMYENFGDIGMNIKRM
Sbjct: 241 YQAMVHELIGLQDNKVDLKSIGSLPKDQQVEVVLSSEQDAFFKSNMYENFGDIGMNIKRM 300

Query: 300 VDEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVS 359
           VD+FQQVAKSNQ+IQT+EDMARFV+NYPEYKKM GNVSKHVTLVTEMSK+VE RKLM VS
Sbjct: 301 VDDFQQVAKSNQNIQTVEDMARFVDNYPEYKKMQGNVSKHVTLVTEMSKLVEARKLMTVS 360

Query: 360 ETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLA 419
           +TEQ+LACNGGQGAA+EAVT+LLNNE+VSDIDRLRLVMLYALRYEK++PVQLMQLFNKLA
Sbjct: 361 QTEQDLACNGGQGAAYEAVTDLLNNESVSDIDRLRLVMLYALRYEKENPVQLMQLFNKLA 420

Query: 420 SRSAKYKPGLVQFLLKQAGVDKRTGDLYGN 449
           SRS KYKPGLVQFLLKQAGV+KRTGDL+GN
Sbjct: 421 SRSPKYKPGLVQFLLKQAGVEKRTGDLFGN 450
Involved in the protein transport to the vacuole, probably at the level of vesicle fusion at the trans-Golgi network (TGN) and not in transport from the TGN to the prevacuolar compartment. Binds syntaxins.
Arabidopsis thaliana (taxid: 3702)
>sp|P97390|VPS45_MOUSE Vacuolar protein sorting-associated protein 45 OS=Mus musculus GN=Vps45 PE=1 SV=1 Back     alignment and function description
>sp|O08700|VPS45_RAT Vacuolar protein sorting-associated protein 45 OS=Rattus norvegicus GN=Vps45 PE=2 SV=1 Back     alignment and function description
>sp|Q9NRW7|VPS45_HUMAN Vacuolar protein sorting-associated protein 45 OS=Homo sapiens GN=VPS45 PE=1 SV=1 Back     alignment and function description
>sp|Q54GE3|VPS45_DICDI Vacuolar protein sorting-associated protein 45 OS=Dictyostelium discoideum GN=vps45 PE=1 SV=1 Back     alignment and function description
>sp|Q09805|VPS45_SCHPO Vacuolar protein sorting-associated protein 45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps45 PE=3 SV=1 Back     alignment and function description
>sp|P38932|VPS45_YEAST Vacuolar protein sorting-associated protein 45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS45 PE=1 SV=2 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 Back     alignment and function description
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
225457759 568 PREDICTED: vacuolar protein sorting-asso 1.0 0.790 0.899 0.0
224066745 568 predicted protein [Populus trichocarpa] 1.0 0.790 0.906 0.0
118486620 568 unknown [Populus trichocarpa] 1.0 0.790 0.902 0.0
297839579 569 hypothetical protein ARALYDRAFT_476877 [ 1.0 0.789 0.875 0.0
224082400 568 predicted protein [Populus trichocarpa] 1.0 0.790 0.899 0.0
356509320 568 PREDICTED: vacuolar protein sorting-asso 1.0 0.790 0.884 0.0
356515981 568 PREDICTED: vacuolar protein sorting-asso 1.0 0.790 0.877 0.0
449462170 568 PREDICTED: vacuolar protein sorting-asso 1.0 0.790 0.857 0.0
18411376 569 vacuolar protein sorting-associated prot 1.0 0.789 0.871 0.0
2921406 569 vacuolar protein sorting homolog [Arabid 1.0 0.789 0.868 0.0
>gi|225457759|ref|XP_002263592.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Vitis vinifera] gi|302142769|emb|CBI19972.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/449 (89%), Positives = 435/449 (96%)

Query: 1   MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKS 60
           MVL++A RDY++RMLQDISGMKVLILDSQTVS VSVVYSQSELLQKEVFLVELVDSI  S
Sbjct: 1   MVLISAVRDYMSRMLQDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELVDSISMS 60

Query: 61  KESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVV 120
           KESMSHLKAVYFLRP+SENIQHLRRQ A+PRFGEYHLFFSN+LKDTQIHILADSDEQEVV
Sbjct: 61  KESMSHLKAVYFLRPTSENIQHLRRQFASPRFGEYHLFFSNILKDTQIHILADSDEQEVV 120

Query: 121 QQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRR 180
           QQVQEFYADFVA++P+HFTLN+PSNH+YMLPAVVDPS LQH+CDRVVDGI A+FLALKRR
Sbjct: 121 QQVQEFYADFVAIDPFHFTLNMPSNHIYMLPAVVDPSGLQHYCDRVVDGIGAIFLALKRR 180

Query: 181 PVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQWT 240
           PVIRYQRTSDIAKRIAQET KLMYQQESGLFDFRRTE+SPLLL++DRRDDPVTPLLNQWT
Sbjct: 181 PVIRYQRTSDIAKRIAQETAKLMYQQESGLFDFRRTEVSPLLLVVDRRDDPVTPLLNQWT 240

Query: 241 YQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMV 300
           YQAMVHELIGIQDNKVDL +IG FPKDQQEVVLSSEQD FFKANMYENFGDIGMNIKRMV
Sbjct: 241 YQAMVHELIGIQDNKVDLTNIGKFPKDQQEVVLSSEQDAFFKANMYENFGDIGMNIKRMV 300

Query: 301 DEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSE 360
           DEFQQ++KSNQ+IQT+EDMA+FV+NYPEYKKMHGNVSKHVT+VTEMSK+VEERKLMLVS+
Sbjct: 301 DEFQQISKSNQNIQTVEDMAKFVDNYPEYKKMHGNVSKHVTMVTEMSKIVEERKLMLVSQ 360

Query: 361 TEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLAS 420
           TEQ+LACNGGQ AAFEAVTNLLN+E VSD+DRLRLVMLYALRYEK+SPVQLMQLFNKLAS
Sbjct: 361 TEQDLACNGGQVAAFEAVTNLLNDERVSDVDRLRLVMLYALRYEKESPVQLMQLFNKLAS 420

Query: 421 RSAKYKPGLVQFLLKQAGVDKRTGDLYGN 449
           RSAKYKPGLVQFLLKQAGVDKR GDLYGN
Sbjct: 421 RSAKYKPGLVQFLLKQAGVDKRIGDLYGN 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066745|ref|XP_002302194.1| predicted protein [Populus trichocarpa] gi|222843920|gb|EEE81467.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486620|gb|ABK95147.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297839579|ref|XP_002887671.1| hypothetical protein ARALYDRAFT_476877 [Arabidopsis lyrata subsp. lyrata] gi|297333512|gb|EFH63930.1| hypothetical protein ARALYDRAFT_476877 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224082400|ref|XP_002306679.1| predicted protein [Populus trichocarpa] gi|222856128|gb|EEE93675.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509320|ref|XP_003523398.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356515981|ref|XP_003526675.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449462170|ref|XP_004148814.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Cucumis sativus] gi|449518378|ref|XP_004166219.1| PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|18411376|ref|NP_565150.1| vacuolar protein sorting-associated protein 45-like protein [Arabidopsis thaliana] gi|28201912|sp|O49048.2|VPS45_ARATH RecName: Full=Vacuolar protein sorting-associated protein 45 homolog; Short=AtVPS45 gi|3540194|gb|AAC34344.1| AtVPS45p [Arabidopsis thaliana] gi|15215684|gb|AAK91388.1| At1g77140/T14N5_2 [Arabidopsis thaliana] gi|20855922|gb|AAM26638.1| At1g77140/T14N5_2 [Arabidopsis thaliana] gi|332197819|gb|AEE35940.1| vacuolar protein sorting-associated protein 45-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2921406|gb|AAC39472.1| vacuolar protein sorting homolog [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
TAIR|locus:2196025 569 VPS45 "vacuolar protein sortin 1.0 0.789 0.831 1.3e-196
ZFIN|ZDB-GENE-060503-526 568 vps45 "vacuolar protein sortin 0.968 0.765 0.446 9.4e-98
UNIPROTKB|F1SDG5 572 VPS45 "Uncharacterized protein 0.975 0.765 0.447 3.7e-96
MGI|MGI:891965 570 Vps45 "vacuolar protein sortin 0.971 0.764 0.445 5.9e-96
UNIPROTKB|E2QVW9 572 VPS45 "Uncharacterized protein 0.975 0.765 0.447 7.6e-96
UNIPROTKB|F1MDA6 570 VPS45 "Uncharacterized protein 0.971 0.764 0.447 9.7e-96
UNIPROTKB|Q9NRW7 570 VPS45 "Vacuolar protein sortin 0.971 0.764 0.443 2e-95
RGD|621267 570 Vps45 "vacuolar protein sortin 0.971 0.764 0.445 2e-95
DICTYBASE|DDB_G0290213 563 vps45 "Sec1-like family protei 0.966 0.770 0.434 1.5e-92
UNIPROTKB|F6Y241 562 VPS45 "Uncharacterized protein 0.955 0.763 0.437 2.5e-90
TAIR|locus:2196025 VPS45 "vacuolar protein sorting 45" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1904 (675.3 bits), Expect = 1.3e-196, P = 1.3e-196
 Identities = 374/450 (83%), Positives = 405/450 (90%)

Query:     1 MVLVTAARDYINRMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKS 60
             MVLVT+ RDYINRMLQDISGMKVLILDS+TVS VS+VYSQSELLQKEVFLVE++DSI  S
Sbjct:     1 MVLVTSVRDYINRMLQDISGMKVLILDSETVSNVSIVYSQSELLQKEVFLVEMIDSISVS 60

Query:    61 KESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDXXXXX 120
             KESMSHLKAVYF+RP+S+NIQ LR QLANPRFGEYHLFFSN+LKDTQIHILADSD     
Sbjct:    61 KESMSHLKAVYFIRPTSDNIQKLRYQLANPRFGEYHLFFSNLLKDTQIHILADSDEQEVV 120

Query:   121 XXXXXFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRR 180
                  +YADFV+ +PYHFTLN+ SNHLYM+PAVVDPS LQ F DRVVDGIAAVFLALKRR
Sbjct:   121 QQVQEYYADFVSGDPYHFTLNMASNHLYMIPAVVDPSGLQRFSDRVVDGIAAVFLALKRR 180

Query:   181 PVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPXXXXXXXXXXPVTPLLNQWT 240
             PVIRYQRTSD AKRIA ET KLMYQ ES LFDFRRTE SP          PVTPLLNQWT
Sbjct:   181 PVIRYQRTSDTAKRIAHETAKLMYQHESALFDFRRTESSPLLLVIDRRDDPVTPLLNQWT 240

Query:   241 YQAMVHELIGIQDNKVDLRSIGDFPKDQQ-EVVLSSEQDTFFKANMYENFGDIGMNIKRM 299
             YQAMVHELIG+QDNKVDL+SIG  PKDQQ EVVLSSEQD FFK+NMYENFGDIGMNIKRM
Sbjct:   241 YQAMVHELIGLQDNKVDLKSIGSLPKDQQVEVVLSSEQDAFFKSNMYENFGDIGMNIKRM 300

Query:   300 VDEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVS 359
             VD+FQQVAKSNQ+IQT+EDMARFV+NYPEYKKM GNVSKHVTLVTEMSK+VE RKLM VS
Sbjct:   301 VDDFQQVAKSNQNIQTVEDMARFVDNYPEYKKMQGNVSKHVTLVTEMSKLVEARKLMTVS 360

Query:   360 ETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLA 419
             +TEQ+LACNGGQGAA+EAVT+LLNNE+VSDIDRLRLVMLYALRYEK++PVQLMQLFNKLA
Sbjct:   361 QTEQDLACNGGQGAAYEAVTDLLNNESVSDIDRLRLVMLYALRYEKENPVQLMQLFNKLA 420

Query:   420 SRSAKYKPGLVQFLLKQAGVDKRTGDLYGN 449
             SRS KYKPGLVQFLLKQAGV+KRTGDL+GN
Sbjct:   421 SRSPKYKPGLVQFLLKQAGVEKRTGDLFGN 450
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0005802 "trans-Golgi network" evidence=IDA;NAS
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005515 "protein binding" evidence=IPI
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006882 "cellular zinc ion homeostasis" evidence=RCA
GO:0006886 "intracellular protein transport" evidence=IGI;RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009624 "response to nematode" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
ZFIN|ZDB-GENE-060503-526 vps45 "vacuolar protein sorting 45 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDG5 VPS45 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:891965 Vps45 "vacuolar protein sorting 45 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QVW9 VPS45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MDA6 VPS45 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRW7 VPS45 "Vacuolar protein sorting-associated protein 45" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621267 Vps45 "vacuolar protein sorting 45 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290213 vps45 "Sec1-like family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F6Y241 VPS45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49048VPS45_ARATHNo assigned EC number0.87111.00.7891yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
pfam00995 554 pfam00995, Sec1, Sec1 family 1e-139
COG5158 582 COG5158, SEC1, Proteins involved in synaptic trans 1e-81
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  409 bits (1053), Expect = e-139
 Identities = 161/432 (37%), Positives = 251/432 (58%), Gaps = 18/432 (4%)

Query: 21  MKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENI 80
            KVL+LD +T   +S V + S+LL+  V LVE    I   +E +  L A+YF+RP+ EN+
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVEN---IENKREPLPDLPAIYFIRPTEENV 57

Query: 81  QHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTL 140
             +   L NP++  YH+FF+N L  + +  LA++D  E+V+QV+E Y DF+ +E   F+L
Sbjct: 58  DRIIDDLKNPKYKSYHIFFTNSLSRSLLERLAEADVAELVKQVKEIYLDFIPLESDLFSL 117

Query: 141 NIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETT 200
            +P++   +     D S L+    R+ +G+ ++ L L   P+IRYQ  S  A+R+A++  
Sbjct: 118 ELPNSFRDLYSPDGDESDLE----RIAEGLFSLLLTLGEIPIIRYQGNS-AAERLAEKLA 172

Query: 201 KLMYQQESGLFD--FRRTEIS---PLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNK 255
           +L+ Q+   LFD     T  S   P+LLILDR  D +TPLL+QWTYQAMVH+L+GI++N+
Sbjct: 173 QLL-QENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDLLGIKNNR 231

Query: 256 VDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQ-QVAKSNQSIQ 314
           V L + G+  + ++EVVL  E D F+  N + +F D+   IK+ + E++ +   SN+  +
Sbjct: 232 VTLDTPGNGGESKKEVVL-DENDPFWVENRHLHFPDVAEKIKKELKEYKEENKNSNKKKK 290

Query: 315 TIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAA 374
           +I D+  FVE  PE++K  G +S H+ L  E+ K ++ERKL  VSE EQ+LA        
Sbjct: 291 SISDLKEFVEKLPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVSELEQDLATGSDADKQ 350

Query: 375 FEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKP-GLVQFL 433
            + +  LLNN  V   D+LRL++LY+L  +      L  L   L       +   LV+ L
Sbjct: 351 KKDILELLNNPKVPLEDKLRLLLLYSL-RDGGKGKDLEDLRKLLLHAGIGPEALNLVKNL 409

Query: 434 LKQAGVDKRTGD 445
            +  G+  RT  
Sbjct: 410 EQLGGLLSRTSG 421

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
KOG1299 549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
PF00995 564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
KOG1302 600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
COG5158 582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1300 593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
KOG1301 621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-80  Score=595.70  Aligned_cols=439  Identities=58%  Similarity=0.918  Sum_probs=414.2

Q ss_pred             CCHHHHHHHHHHHHhccC-CCcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCCHHH
Q 042034            1 MVLVTAARDYINRMLQDI-SGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSEN   79 (449)
Q Consensus         1 m~l~~~~~~~l~~~L~~~-~~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~~~~   79 (449)
                      |||+.+++.|+..++... +|-|||++|+.|.+++|.+++.|+++++.|++++.|++  +.|+.+.+.+||+|||||++|
T Consensus         1 Mnlv~~~k~yi~~m~~~~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n--~~rE~~khLkcvvfiRPT~en   78 (549)
T KOG1299|consen    1 MNLVSSSKKYIEKMIQESGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDN--KSRERIKHLKCVVFIRPTPEN   78 (549)
T ss_pred             CchHHHHHHHHHHHHHhcCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcc--hhhHHhhCceEEEEeccChHH
Confidence            999999999999999876 59999999999999999999999999999999999998  789999999999999999999


Q ss_pred             HHHHHHHhcCCCCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCCCCCCcchH
Q 042034           80 IQHLRRQLANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSL  159 (449)
Q Consensus        80 i~~i~~d~~~~~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~~~~~~~~~  159 (449)
                      ++++++++++|+|..|||+|++.++...++.||+++..+.|+.|+|+++||++.++++|||+.|+.|...  ..|+    
T Consensus        79 iq~L~~ELrnPry~~Y~lyFsN~i~ks~le~LAesD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~--~~w~----  152 (549)
T KOG1299|consen   79 IQLLIEELRNPRYGEYHLYFSNIISKSDLERLAESDEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESS--LNWD----  152 (549)
T ss_pred             HHHHHHHhcCCcceeEEEEEeccCCHHHHHHHHhcchHHHHHHHHHHHHhhhccCCceeecCCchhhccc--cccC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999986543  4687    


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCCCeEEEecCCCCCcccccchh
Q 042034          160 QHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQW  239 (449)
Q Consensus       160 ~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~~~~~~~~~~~~~~~~~~liIlDR~~DlvTPLl~~~  239 (449)
                      ...++++.+||.+++.+++..|.|||++++..|+++|+.+...|.+ +++.|+|+.+...++|+|+||..|++|||++||
T Consensus       153 ~~~l~R~~~GI~AllLsLK~~P~IRYq~~S~~~~~lAe~vs~~i~~-E~~lFdfr~~~~~p~LLiLDR~~DpvTPLL~qW  231 (549)
T KOG1299|consen  153 PGALTRSTQGIIALLLSLKKKPVIRYQTSSRACKRLAEEVSYRITK-ESTLFDFRRTDSPPLLLILDRRDDPVTPLLNQW  231 (549)
T ss_pred             hhhhhHhHhhHHHHHHhccCCCeeEeecCCHHHHHHHHHHHHHHhh-hhhhcccccCCCCCeEEEEecCCCCCchhhhHH
Confidence            4678899999999999999999999999999999999999999954 888999987777899999999999999999999


Q ss_pred             hhHHHHhhhcCccCCeEEEeccCCCCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Q 042034          240 TYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDM  319 (449)
Q Consensus       240 TYe~Lidel~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~~~~~s~~e~  319 (449)
                      |||||+||++||++|+|++...++.+++.++++||+.+|+||+..++.||+++|..+++.++++|...+..++.+|+.||
T Consensus       232 TYQaMvHEl~gi~nnrvdls~~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~fq~k~~~~~~iesi~Dm  311 (549)
T KOG1299|consen  232 TYQAMVHELLGIKNNRVDLSKVPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSEFQFKTKTNSNIESIADM  311 (549)
T ss_pred             HHHHHHHHHhccccCEEeeccCCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhHHHH
Confidence            99999999999999999999888777777899999999999999999999999999999999999987777888999999


Q ss_pred             HHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCcchhHHHHHHHHhCCCCChhhHHHHHHHH
Q 042034          320 ARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLY  399 (449)
Q Consensus       320 ~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~i~~li~~~~~~~~~~lRLl~L~  399 (449)
                      +.|+...|++++....+++|+.+.+++++..+.+++.++.|+||+++++.+...+++.|.++|.++..+..+++||+|||
T Consensus       312 k~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~~~i~~LL~n~~vs~~d~lrLv~lY  391 (549)
T KOG1299|consen  312 KNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGADFNDIKKLLQNEKVSEIDRLRLVALY  391 (549)
T ss_pred             HHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhHHHHHHHHcCCcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888899999999999989999999999999


Q ss_pred             HHHcCCCChhHHHHHHHHHHhhcCCCchHHHHHHHHhcCCCCCCCCCCCC
Q 042034          400 ALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGN  449 (449)
Q Consensus       400 ~l~~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  449 (449)
                      +|.+...++.+..++-+.|.+.-+- .-.++..+++|||...|+.|+|+.
T Consensus       392 aLr~e~~~~~~~~~L~~~l~~~~~~-~~~~v~~ll~~~G~~~R~~dlf~~  440 (549)
T KOG1299|consen  392 ALRYERHPPNELRQLPQILREQGPK-KPELVPFLLKYAGLHVRQGDLFGP  440 (549)
T ss_pred             HHHhccCChHHHHHHHHHHHhcCCC-cchhHHHHHHhcCcccccccccCc
Confidence            9999999998889888877665443 778999999999999999999984

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
1fvf_A 591 Crystal Structure Analysis Of Neuronal Sec1 From Th 2e-18
2xhe_A 650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 6e-18
1epu_A 591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 2e-17
2pjx_A 592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 3e-17
3c98_A 606 Revised Structure Of The Munc18a-Syntaxin1 Complex 2e-16
3puj_A 594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 2e-16
1mqs_A 671 Crystal Structure Of Sly1p In Complex With An N-Ter 7e-12
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure 
Iteration: 1

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 174/397 (43%), Gaps = 28/397 (7%)
Query: 22  KVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQ 81
           KVLI+D  ++  VS      E++ + + LVE    I + +E +  L+AVY + P+ E+++
Sbjct: 26  KVLIVDQLSMRMVSACCKMHEIMSEGITLVE---DINRRREPLPLLEAVYLITPTEESVK 82
Query: 82  HLRRQLANPRFGEY---HLFFSNMLKDTQIHILADSDXXXXXXXXXXFYADFVAVEPYHF 138
            L     NP   +Y   H+FF+    +     L  S               F+  E   F
Sbjct: 83  CLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIF 142
Query: 139 TLNIPSNHLYMLPAVVDPSSLQHFC---DRVVDGIAAVFLALKRRPVIRYQRTSDIAKRI 195
           +L+ P           +PS  Q      +R  + IA +   L   P +RY+   D     
Sbjct: 143 SLDSPDT----FQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASF 198
Query: 196 AQETTKLM--YQQESGLFDFRRTEISPXXXXXXXXXXPVTPLLNQWTYQAMVHELIGIQD 253
           AQ   + +  Y+ +         +             P++PLL++ T+QAM ++L+ I++
Sbjct: 199 AQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIEN 258
Query: 254 NKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSI 313
           +     + G     ++EV+L  E+D  +    +++   +  N+ + + +F    +   + 
Sbjct: 259 DVYKYVNTGGNEVPEKEVLL-DEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAA 317
Query: 314 QT--IEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQ 371
               I+D+++ ++  P+Y+K     S H+ L  +  K  ++    L  + EQ+LA   G 
Sbjct: 318 DKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLC-KVEQDLAM--GT 374
Query: 372 GAAFEAVTNLLNN-------ENVSDIDRLRLVMLYAL 401
            A  E + + + N       + +S  D++R+++LY +
Sbjct: 375 DADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYII 411
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
2xhe_A 650 UNC18; exocytosis, exocytosis complex, snare, neur 2e-90
1dn1_A 594 NSEC1, syntaxin binding protein 1; protein-protein 2e-88
1epu_A 591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 9e-87
3puk_A 592 Syntaxin-binding protein 3; membrane trafficking, 1e-82
1mqs_A 671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 7e-76
1y9j_A159 SEC1 family domain containing protein 1; membrane 2e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
 Score =  286 bits (733), Expect = 2e-90
 Identities = 97/437 (22%), Positives = 194/437 (44%), Gaps = 27/437 (6%)

Query: 1   MVLVTAARDYINRMLQDISG---MKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSI 57
           M L +A +  +   L+ ++     KVL++D   +  +S     SE+L   V +VE    +
Sbjct: 2   MSLKSAVKTVLTNSLRSVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVED---V 58

Query: 58  YKSKESMSHLKAVYFLRPSSENIQHLRRQLAN--PRFGEYHLFFSNMLKDTQIHILADSD 115
            K ++ +     VYF+ P+ EN+ ++ R  A+  P +   HLFF + + D  +  LA + 
Sbjct: 59  SKQRKVLPQFHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAK 118

Query: 116 EQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFL 175
             + V+ ++E    F+  E   FTLN P   +    +     ++    D +V  ++ +  
Sbjct: 119 AVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSSYNI----DHLVRRLSTLCT 174

Query: 176 ALKRRPVIRYQRTS-DIAKRIAQE-TTKLMYQQESGLFDFRRTEISPLLLILDRRDDPVT 233
            +   P++RY  TS    +R+A +   ++      GL + R  ++    LILDR  D  +
Sbjct: 175 TMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKS 234

Query: 234 PLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIG 293
           PL+++ TYQA  ++L+ I+++     ++    ++QQ  V+  E D  +    + +  ++ 
Sbjct: 235 PLVHELTYQAAAYDLLNIENDIYSYSTVDAGGREQQRQVVLGEDDDIWLQMRHLHISEVF 294

Query: 294 MNIKRMVDEFQQVA-------KSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEM 346
             +K   DEF   A        S Q       + + +++ P++++     S H+ +   +
Sbjct: 295 RKVKSSFDEFCVSARRLQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAI 354

Query: 347 SKMVEERKLMLVSETEQELACNGGQGA-----AFEAVTNLLNNENVSDIDRLRLVMLYAL 401
           +       +   ++ EQ +     Q           V +++ +  VS  D+LR +ML  L
Sbjct: 355 NMAF-SSTIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLMLCVL 413

Query: 402 RYEKDSPVQLMQLFNKL 418
                S  +L  L +  
Sbjct: 414 AKNGTSSHELNNLLDNA 430
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
2xhe_A 650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
1epu_A 591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
1dn1_A 594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3c98_A 606 Syntaxin-binding protein 1; protein complex, alter 100.0
3puk_A 592 Syntaxin-binding protein 3; membrane trafficking, 100.0
1mqs_A 671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.95
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=100.00  E-value=5.4e-85  Score=697.96  Aligned_cols=427  Identities=23%  Similarity=0.325  Sum_probs=382.3

Q ss_pred             CCHHHHHHHHHH-HHhccC---CCcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCC
Q 042034            1 MVLVTAARDYIN-RMLQDI---SGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPS   76 (449)
Q Consensus         1 m~l~~~~~~~l~-~~L~~~---~~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~   76 (449)
                      |+|++++|++|+ ++| ++   +||||||+|+.+.++||+++++++|+++||++++.|++   .|+|+++.+|||||+|+
T Consensus         2 ~~l~~~~r~~ll~~~l-~v~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~---~r~~~~~~~aIyfv~Pt   77 (650)
T 2xhe_A            2 MSLKSAVKTVLTNSLR-SVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSK---QRKVLPQFHGVYFIEPT   77 (650)
T ss_dssp             CCHHHHHHHHHHHHHT-TCCCCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTT---CCSCBTTSEEEEEECSC
T ss_pred             ccHHHHHHHHHHHHHh-ccccCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccC---CCCCCCCCCEEEEEcCC
Confidence            899999999999 999 87   79999999999999999999999999999999999997   89999999999999999


Q ss_pred             HHHHHHHHHHhcC--CCCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCCCCC
Q 042034           77 SENIQHLRRQLAN--PRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVV  154 (449)
Q Consensus        77 ~~~i~~i~~d~~~--~~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~~~~  154 (449)
                      .+||++|++|+++  ++|++|||+|+|.+++.+++.|+++++.+.|.++.|+++||+|+|+|+|||++|++|...+...+
T Consensus        78 ~~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~  157 (650)
T 2xhe_A           78 EENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS  157 (650)
T ss_dssp             HHHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHHSGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred             HHHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHhcchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence            9999999999999  89999999999999999999999999999998999999999999999999999998644321233


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCc-hHHHHHHHHHHHHHHhhhccCCC-CCCCCCCCeEEEecCCCCCc
Q 042034          155 DPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTS-DIAKRIAQETTKLMYQQESGLFD-FRRTEISPLLLILDRRDDPV  232 (449)
Q Consensus       155 ~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~-~~a~~va~~l~~~l~~~~~~~~~-~~~~~~~~~liIlDR~~Dlv  232 (449)
                      +    ...++++|++|+++|.++|.+|.|||+|++ ..|++||+++++++.+.....+. +.+...+++|||+||++|++
T Consensus       158 ~----~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D~v  233 (650)
T 2xhe_A          158 S----SYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLK  233 (650)
T ss_dssp             G----GCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHHHHTTTSCCCCCCSSCCEEEEECGGGCSS
T ss_pred             c----hHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHhhccCCcccCCCCCCCCEEEEEcCCcchh
Confidence            3    456899999999999999999999999986 68999999998888541122221 22345688999999999999


Q ss_pred             ccccchhhhHHHHhhhcCccCCeEEEeccCC-CCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Q 042034          233 TPLLNQWTYQAMVHELIGIQDNKVDLRSIGD-FPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQ  311 (449)
Q Consensus       233 TPLl~~~TYe~Lidel~~I~~~~v~~~~~~~-~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~~  311 (449)
                      |||+||||||||+||+|||++|.|+++...+ +..+.+++.| +++|++|+++||+||++|++.|++.++++++.++...
T Consensus       234 TPLlhq~TYqaLi~dll~I~~n~v~~~~~~~~~~~~~k~~~L-~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~  312 (650)
T 2xhe_A          234 SPLVHELTYQAAAYDLLNIENDIYSYSTVDAGGREQQRQVVL-GEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQ  312 (650)
T ss_dssp             TTTSCCCBHHHHHHHHSCCBTTEEEEEECCSSCCSEEEEEEC-CTTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhccccchHHHHHHHHhcCcCCEEEEEecCCCCCccceEEeC-CCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999987643 2345678999 5899999999999999999999999999999876544


Q ss_pred             -------CCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCc-----chhHHHHH
Q 042034          312 -------SIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQ-----GAAFEAVT  379 (449)
Q Consensus       312 -------~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~-----~~~~~~i~  379 (449)
                             +..|++||++||++||+++++++++++|++||++|++.+++ +|.+++++||++++|.|.     +..+++|+
T Consensus       313 ~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~  391 (650)
T 2xhe_A          313 GLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVA  391 (650)
T ss_dssp             TCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSCCBCCCHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence                   45699999999999999999999999999999999999999 999999999999999875     34589999


Q ss_pred             HHHhCCCCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCC--CchHHHHHHHHhcCCCC
Q 042034          380 NLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAK--YKPGLVQFLLKQAGVDK  441 (449)
Q Consensus       380 ~li~~~~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~~  441 (449)
                      ++|.++..+..++|||+|||+++++|++++++++    +++++|.  +++.++.||.++|+...
T Consensus       392 ~ll~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~----ll~~~G~~~~~~~~i~nL~~lgl~~~  451 (650)
T 2xhe_A          392 SVVVDRRVSTEDKLRCLMLCVLAKNGTSSHELNN----LLDNANIATPSRSAIYNLEMLGATVV  451 (650)
T ss_dssp             HHHHCTTSCHHHHHHHHHHHHHHHTCBCHHHHHH----HHHHTTCCGGGGHHHHGGGGGTCCCB
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHcCCCHHHHHHHHHHHHhCCccc
Confidence            9998777999999999999999999999877753    5677776  99999999999987653
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 449
d1epua_ 590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 2e-99
d1dn1a_ 589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-96
d1mqsa_ 653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 4e-96
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  307 bits (788), Expect = 2e-99
 Identities = 91/425 (21%), Positives = 190/425 (44%), Gaps = 21/425 (4%)

Query: 8   RDYINRMLQDI---SGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESM 64
              +N ++  +   +  KVLI+D  ++  VS      E++ + + LVE    I + +E +
Sbjct: 8   EKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVED---INRRREPL 64

Query: 65  SHLKAVYFLRPSSENIQHLRRQL---ANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQ 121
             L+AVY + P+ E+++ L        NP++   H+FF+    +     L  S     ++
Sbjct: 65  PLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIK 124

Query: 122 QVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRP 181
            ++E    F+  E   F+L+ P               + +  +R  + IA +   L   P
Sbjct: 125 TLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNK-ERCAEQIATLCATLGEYP 183

Query: 182 VIRYQRTSDIAKRIAQETTKLM--YQQESGLFDFRRTEISPLLLILDRRDDPVTPLLNQW 239
            +RY+   D     AQ   + +  Y+ +         +    LLILDR  DP++PLL++ 
Sbjct: 184 SVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHEL 243

Query: 240 TYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRM 299
           T+QAM ++L+ I+++     + G     ++EV+L  + D  +    +++   +  N+ + 
Sbjct: 244 TFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEK-DDLWVEMRHQHIAVVSQNVTKK 302

Query: 300 VDEFQQ--VAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLML 357
           + +F       +      I+D+++ ++  P+Y+K     S H+ L  +  K  ++  +  
Sbjct: 303 LKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQH-VDK 361

Query: 358 VSETEQELACNGGQGAA-----FEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLM 412
           + + EQ+LA                +  +L ++ +S  D++R+++LY +     S   L 
Sbjct: 362 LCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLA 421

Query: 413 QLFNK 417
           +L   
Sbjct: 422 KLVQH 426
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
d1dn1a_ 589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_ 590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_ 653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-78  Score=643.28  Aligned_cols=434  Identities=20%  Similarity=0.346  Sum_probs=377.2

Q ss_pred             CCHHHHHHHHHHH-HhccCCC---cEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCC
Q 042034            1 MVLVTAARDYINR-MLQDISG---MKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPS   76 (449)
Q Consensus         1 m~l~~~~~~~l~~-~L~~~~~---~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~   76 (449)
                      |.|.+++++++++ ++++++|   |||||+|+.+.++||+++++++|+++||++++.|+.   +|+|+++.+|||||+|+
T Consensus         1 ~~~~~~~~~~~l~~~~~~v~~~~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~---~r~~~~~~~aIy~i~Pt   77 (589)
T d1dn1a_           1 IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK---RREPLPSLEAVYLITPS   77 (589)
T ss_dssp             CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTS---CCCCCTTSEEEEEECCC
T ss_pred             CChHHHHHHHHHHHHHhccCCCCccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccC---CCCCCCCCCEEEEEcCC
Confidence            7899999999876 8988753   999999999999999999999999999999999996   89999999999999999


Q ss_pred             HHHHHHHHHHhcC---CCCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCCCC
Q 042034           77 SENIQHLRRQLAN---PRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAV  153 (449)
Q Consensus        77 ~~~i~~i~~d~~~---~~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~~~  153 (449)
                      .+|+++|++|+++   ++|++|||+|+|+++..+++.|+++++.+.|.+|.|+++||+|+|+|+|||++|++|...+. .
T Consensus        78 ~~ni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~le~La~~~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~-~  156 (589)
T d1dn1a_          78 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYS-P  156 (589)
T ss_dssp             HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHC-G
T ss_pred             HHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhcCccccCCeEEEEecceeeCCCCEEEecCCchHHHhcC-C
Confidence            9999999999987   47999999999999999999999999999999999999999999999999999998643321 1


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHHhhhccCCCC--CCCCCCCeEEEecCCCCC
Q 042034          154 VDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDF--RRTEISPLLLILDRRDDP  231 (449)
Q Consensus       154 ~~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~~~~~~~~~~--~~~~~~~~liIlDR~~Dl  231 (449)
                      .......+.++++|++|+++|.++|.+|.|||+|+++.|+.+|+++++++.+..+....+  ...+.+++|||+||++|+
T Consensus       157 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~Dl  236 (589)
T d1dn1a_         157 HKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDP  236 (589)
T ss_dssp             GGTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCS
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHHHHHHHHHhcCcccCCCcccCCceEEEeccCccc
Confidence            111112578999999999999999999999999998889999999988875433222111  234557899999999999


Q ss_pred             cccccchhhhHHHHhhhcCccCCeEEEeccCCCCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Q 042034          232 VTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQ  311 (449)
Q Consensus       232 vTPLl~~~TYe~Lidel~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~~  311 (449)
                      +|||+||||||||+||+|||++|.|+++.......+.+++.+ +++|++|+++|++||++|+..+.+.++++++.++...
T Consensus       237 iTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~~~~~~k~~~l-~~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~~  315 (589)
T d1dn1a_         237 SSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLL-DEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNT  315 (589)
T ss_dssp             STTTSCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEEC-STTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             cccccccccHHHHHHHHhcccCCeEEecCCCCCcccceEeec-CCCcHHHHHhhcccHHHHHHHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999999999886544444567777 7899999999999999999999999999998875433


Q ss_pred             -CCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCcc-----hhHHHHHHHHhCC
Q 042034          312 -SIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQG-----AAFEAVTNLLNNE  385 (449)
Q Consensus       312 -~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~-----~~~~~i~~li~~~  385 (449)
                       +..+++||+++|+++|+++++++.++.|++||++|++.++ ++|.+++++||++++|.+.+     ...+.+++++.++
T Consensus       316 ~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~-~~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~i~~~l~~~  394 (589)
T d1dn1a_         316 GEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDA  394 (589)
T ss_dssp             -----CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHHCT
T ss_pred             cccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHhcC
Confidence             4468899999999999999999999999999999999996 78999999999999987642     3578899988888


Q ss_pred             CCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCCCchHHHHHHHHhcCCCCC
Q 042034          386 NVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKR  442 (449)
Q Consensus       386 ~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~  442 (449)
                      ..+.+++|||+|||+++++|+++++++++.+.+  .++.+.+.++.+|.++|....+
T Consensus       395 ~~~~~d~LRL~~l~~l~~~g~~~~~~~~l~~~~--~~~~~~~~~~~~l~~lg~~~~~  449 (589)
T d1dn1a_         395 NVSTYDKIRIILLYIFLKNGITEENLNKLIQHA--QIPPEDSEIITNMAHLGVPIVT  449 (589)
T ss_dssp             TSCHHHHHHHHHHHHHHTTCBCHHHHHHHHHHH--TCCHHHHHHHHHGGGGTCCCBC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHc--CCChHHHHHHHHHHHhCCcccc
Confidence            789999999999999999999999998887764  3677889999999999976543
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure