Citrus Sinensis ID: 042043

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MPELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSIGAKCARREEEEEQNQLQQQQGENEPGSDVKSEPLDANNDHHQEPPWLELGKS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccccccEcEEEEcEEEcccccccccccccccccccccccccccccccccccccccccHHHcccc
Coil and Loop (DISEMBL)
mpellgenEKLRKENAQLNNELSQLKGLCNNILALMTNyasgqldnvslpegktvdeldltprlfgvsigakcarREEEEEQNQLQQqqgenepgsdvksepldanndhhqeppwlelgks
Flexible Loop (DISEMBL)
MPELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSIGAKCARREEEEEQNQlqqqqgenepgsdVKSEpldanndhhqeppwlelgks
Low Complexity Region (SEG)
MPELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSIGAKCARReeeeeqnqlqqqqgenePGSDVKSEPLDANNDHHQEPPWLELGKS
Disordered region (IsUnstruct)
***********************QLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSIG***************************************************
Disordered Region (DISOPRED)
**ELL**NEKLRKENAQLNNELSQLKGLCNNILALMTN*************************LFGVSIGA*******************************************WLEL***
Disordered Region (DISEMBL)
********EKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSIGAKCA*************************SEPLDANNDHHQEPPWLELGKS
Disordered Region (DISPRO)
*PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASG*L**********VDELDLTPRLFGVSIGAKCA***********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSIGxxxxxxxxxxxxxxxxxxxxxNEPGSDVKSEPLDANNDHHQEPPWLELGKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q9T0D3	377	Heat stress transcription	yes	no	0.966	0.310	0.431	1e-20
Q9SCW4	299	Heat stress transcription	no	no	0.801	0.324	0.353	2e-11
Q6Z9C8	390	Heat stress transcription	yes	no	0.727	0.225	0.333	1e-08
Q652B0	454	Heat stress transcription	no	no	0.826	0.220	0.328	1e-07
Q7XRX3	305	Heat stress transcription	no	no	0.553	0.219	0.361	3e-05

>sp|Q9T0D3|HFB2B_ARATH Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 85/153 (55%), Gaps = 36/153 (23%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVS-LPEGKTVDEL-- 58
           PEL+ ENE+LRK+N +L  E+++LKGL  NI  LM N+  GQ D    LPEGK +D L  
Sbjct: 227 PELVEENERLRKDNERLRKEMTKLKGLYANIYTLMANFTPGQEDCAHLLPEGKPLDLLPE 286

Query: 59  -----------------------DLTPRLFGVSIGAKCARR--------EEEEEQNQLQQ 87
                                  DLTPRLFGVSIG K ARR        EE++++ +   
Sbjct: 287 RQEMSEAIMASEIETGIGLKLGEDLTPRLFGVSIGVKRARREEELGAAEEEDDDRREAAA 346

Query: 88  QQGENEPGSDVKSEPLDANNDHHQEPPWLELGK 120
           Q+GE    SDVK+EP++ NN  +    WLELGK
Sbjct: 347 QEGEQ--SSDVKAEPMEENNSGNHNGSWLELGK 377

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCW4|HFB2A_ARATH Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 36/133 (27%)

Query: 3   ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQ-LDNVSLPEGKTVDELDL- 60
           ELL ENEKLR +N QLN EL+Q+K +C+NI +LM+NY   Q  D    P G +   ++  
Sbjct: 174 ELLEENEKLRSQNIQLNRELTQMKSICDNIYSLMSNYVGSQPTDRSYSPGGSSSQPMEFL 233

Query: 61  ----------------TPRLFGVSIGAKCARREEEEEQNQLQQQQGENEPGSDVKSEPLD 104
                           +PRLFGV IG K  R E                 G  VK+  + 
Sbjct: 234 PAKRFSEMEIEEEEEASPRLFGVPIGLKRTRSE-----------------GVQVKTTAVV 276

Query: 105 ANNDHHQEPPWLE 117
             N   +E PWL 
Sbjct: 277 GENS-DEETPWLR 288

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z9C8|HFB2B_ORYSJ Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 62/141 (43%), Gaps = 53/141 (37%)

Query: 7   ENEKLRKENAQLNNELSQLKGLCNNILALMTNYASG-QLDN------------------- 46
           ENE+LR+ENAQL  ELSQ++ LCNNIL LM+ YAS  QLD                    
Sbjct: 211 ENERLRRENAQLARELSQMRKLCNNILLLMSKYASTQQLDAANASSAAGNNNNNNCSGES 270

Query: 47  ----VSLPEGKTVDELDLTP-------------------RLFGVSIGAKCARREEEEEQN 83
                 LP    +D +   P                   +LFGVSIG K  R +      
Sbjct: 271 AEAATPLPLPAVLDLMPSCPGAASAAAPVSDNEEGMMSAKLFGVSIGRKRMRHD------ 324

Query: 84  QLQQQQGENEPGSDVKSEPLD 104
                 G+++  + VK+EP+D
Sbjct: 325 ----GGGDDDHAATVKAEPMD 341

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652B0|HFB2C_ORYSJ Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 43/143 (30%)

Query: 7   ENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQ----------LDNVSLPEGKTVD 56
           ENE+LR+ENA+L  EL  +K LCNNIL LM+ YA+ Q          + N S    + V 
Sbjct: 221 ENERLRRENARLTRELGHMKKLCNNILLLMSKYAATQHVEGSAGISSIANCSGESSEAVP 280

Query: 57  E--------LDLTP------------------------RLFGVSIGAKCARREEEEEQNQ 84
                    LDL P                        RLFGVSIG K  R +     ++
Sbjct: 281 PPPPLPPAILDLMPSCPALATAAAAAGLAIDGEPDPSARLFGVSIGLKRTRDDAAAAADE 340

Query: 85  LQQQQGENEP-GSDVKSEPLDAN 106
               + + E  G+DVK E  D +
Sbjct: 341 DGGGEDQAEHGGADVKPEAADPH 363

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XRX3|HFB2A_ORYSJ Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1   MPELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDL 60
           + EL  EN +LR+ENA+L  EL++ + +C+ +  L++ Y     D+      +   E D+
Sbjct: 154 VAELEEENARLRRENARLARELARARRVCDGVRRLVSRY-----DHDHGGGEEEAGEGDV 208

Query: 61  TPRLFGVSIGAK 72
            P LFGV+IG K
Sbjct: 209 KPMLFGVAIGGK 220

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
225426819	305	PREDICTED: heat stress transcription fac	0.925	0.367	0.555	7e-31
289466351	305	HSP transcription factor [Vitis pseudore	0.925	0.367	0.555	1e-30
297742579	306	unnamed protein product [Vitis vinifera]	0.909	0.359	0.548	2e-29
147852112	477	hypothetical protein VITISV_009283 [Viti	0.925	0.234	0.555	3e-29
449452366	341	PREDICTED: heat stress transcription fac	0.958	0.340	0.453	8e-23
356539790	355	PREDICTED: heat stress transcription fac	0.966	0.329	0.456	2e-22
255537353	337	Heat shock factor protein, putative [Ric	0.966	0.347	0.496	3e-21
402715723	339	heat shock transcription factor HSFB2b [	0.983	0.351	0.471	3e-21
671866	298	heat shock transcription factor 29 [Glyc	0.983	0.399	0.471	3e-21
356497218	355	PREDICTED: heat stress transcription fac	0.983	0.335	0.471	3e-21

>gi|225426819|ref|XP_002283139.1| PREDICTED: heat stress transcription factor B-2b [Vitis vinifera]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 94/135 (69%), Gaps = 23/135 (17%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDEL--- 58
           PE+L ENE+LR+EN+QL  EL+QL+GLCNNILALMTNYA+GQ+D   +PEG+ +D L   
Sbjct: 174 PEILEENERLRRENSQLTQELTQLRGLCNNILALMTNYAAGQIDAGGIPEGRPLDLLTER 233

Query: 59  ---------------DLTPRLFGVSIGAKCARREEEEEQNQLQQQQGENEPGSDVKSEPL 103
                          DL+PRLFGVSIG K  RR+EEEE  +  Q Q +     +VKSEPL
Sbjct: 234 QLPVEAGQSGVKAEGDLSPRLFGVSIGVKRVRRDEEEESEKEAQTQQQ-----EVKSEPL 288

Query: 104 DANNDHHQEPPWLEL 118
           D ++DHHQ+PPWLEL
Sbjct: 289 DGSSDHHQDPPWLEL 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289466351|gb|ADC94861.1| HSP transcription factor [Vitis pseudoreticulata]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 94/135 (69%), Gaps = 23/135 (17%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDEL--- 58
           PE+L ENE+LR+EN+QL  EL+QL+GLCNNILALMTNYA+GQ+D   +PEG+ +D L   
Sbjct: 174 PEILEENERLRRENSQLTQELTQLRGLCNNILALMTNYAAGQIDAGGIPEGRPLDLLTER 233

Query: 59  ---------------DLTPRLFGVSIGAKCARREEEEEQNQLQQQQGENEPGSDVKSEPL 103
                          DL+PRLFGVSIG K  RR+EEEE  +  Q Q +     +VKSEPL
Sbjct: 234 QLPVEAGQSGVKAEGDLSPRLFGVSIGVKRVRRDEEEESEKEGQTQQQ-----EVKSEPL 288

Query: 104 DANNDHHQEPPWLEL 118
           D ++DHHQ+PPWLEL
Sbjct: 289 DGSSDHHQDPPWLEL 303

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742579|emb|CBI34728.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/133 (54%), Positives = 92/133 (69%), Gaps = 23/133 (17%)

Query: 4   LLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDEL----- 58
           +L ENE+LR+EN+QL  EL+QL+GLCNNILALMTNYA+GQ+D   +PEG+ +D L     
Sbjct: 160 ILEENERLRRENSQLTQELTQLRGLCNNILALMTNYAAGQIDAGGIPEGRPLDLLTERQL 219

Query: 59  -------------DLTPRLFGVSIGAKCARREEEEEQNQLQQQQGENEPGSDVKSEPLDA 105
                        DL+PRLFGVSIG K  RR+EEEE  +  Q Q +     +VKSEPLD 
Sbjct: 220 PVEAGQSGVKAEGDLSPRLFGVSIGVKRVRRDEEEESEKEAQTQQQ-----EVKSEPLDG 274

Query: 106 NNDHHQEPPWLEL 118
           ++DHHQ+PPWLEL
Sbjct: 275 SSDHHQDPPWLEL 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852112|emb|CAN82265.1| hypothetical protein VITISV_009283 [Vitis vinifera]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 93/135 (68%), Gaps = 23/135 (17%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDEL--- 58
           PE+L ENE+LR+EN+QL  EL+QL+GLCNNILALMTNYA+GQ+D   +PEG+ +D L   
Sbjct: 346 PEILEENERLRRENSQLTQELTQLRGLCNNILALMTNYAAGQIDAGGIPEGRPLDLLTER 405

Query: 59  ---------------DLTPRLFGVSIGAKCARREEEEEQNQLQQQQGENEPGSDVKSEPL 103
                          DL+PRLFGVSIG K  RR+EEEE  +  Q Q +      VKSEPL
Sbjct: 406 QLPVEAGQSGVKAEGDLSPRLFGVSIGVKRVRRDEEEESEKEXQTQQQE-----VKSEPL 460

Query: 104 DANNDHHQEPPWLEL 118
           D ++DHHQ+PPWLEL
Sbjct: 461 DGSSDHHQDPPWLEL 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452366|ref|XP_004143930.1| PREDICTED: heat stress transcription factor B-2b-like [Cucumis sativus] gi|449534034|ref|XP_004173974.1| PREDICTED: heat stress transcription factor B-2b-like [Cucumis sativus]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 97/163 (59%), Gaps = 47/163 (28%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASG---QLDNVSLPEGKTVD-- 56
           PEL+ ENE+LRKEN QL++EL+QLKGLCNNIL+LMTNYASG   QL++ S+ +GK ++  
Sbjct: 177 PELVRENERLRKENMQLSHELTQLKGLCNNILSLMTNYASGQHQQLESGSVRDGKALELL 236

Query: 57  --------------------------------ELDLTPRLFGVSIGAKCARREEEEE--- 81
                                            + +TP+LFGVSIG K  RRE EEE   
Sbjct: 237 PARQVMEDEGAVSDGAHEVRLKMEEKMTAAAAAVGMTPKLFGVSIGMKRMRREIEEEEEE 296

Query: 82  ---QNQLQQQQGENEPGSDVKSEPLDANNDH--HQEPPWLELG 119
              QN +Q ++GE   GS++K+EPLD N++H      PWLELG
Sbjct: 297 MVGQNHVQSEEGET--GSEIKAEPLDENSEHPDGSASPWLELG 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539790|ref|XP_003538376.1| PREDICTED: heat stress transcription factor B-2b-like [Glycine max]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 93/173 (53%), Gaps = 56/173 (32%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASG-----------QLDNVSLP 50
           PELL ENE+LRKEN QL+NELSQLKGLCNNIL+LMTNYASG            +  V +P
Sbjct: 183 PELLEENERLRKENIQLSNELSQLKGLCNNILSLMTNYASGFSRQQLESSTSAVRTVPVP 242

Query: 51  EGKTV-------------DELDL------------------TPRLFGVSIGAKCARRE-- 77
           +GK               D L +                   P+LFGVSIG K  R E  
Sbjct: 243 DGKAPLELLPAKHVSSADDALHVGGAAGAAACATGNAAEAEVPKLFGVSIGLKRCRTECE 302

Query: 78  ---EEEEQNQLQ-----QQQGENEP--GSDVKSEPLDANNDHHQ--EPPWLEL 118
              E E+QNQ+Q     Q Q   EP  GSDVKSEPLD ++  +Q  +P WLEL
Sbjct: 303 AEPEGEDQNQMQTRAQTQSQSSQEPDHGSDVKSEPLDGDDSDYQDHDPHWLEL 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537353|ref|XP_002509743.1| Heat shock factor protein, putative [Ricinus communis] gi|223549642|gb|EEF51130.1| Heat shock factor protein, putative [Ricinus communis]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 95/153 (62%), Gaps = 36/153 (23%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNV-------------- 47
           PE+L ENE+LRKEN+QL++EL+QLKGLCNNILALM+ Y+SGQL++               
Sbjct: 187 PEILEENERLRKENSQLSHELTQLKGLCNNILALMSKYSSGQLNDHNNDNNSNNHPLELL 246

Query: 48  --------------SLPEGKTVDELDLTPRLFGVSIGAKCARREEEEEQ--NQLQQQQGE 91
                         + P    VDE D++PRLFGV IG K  R+EEEEE+  +  QQ+  E
Sbjct: 247 PVTQTASQPKEAVGTPPSSAAVDE-DVSPRLFGVCIGVKRKRKEEEEEKQGSNNQQESQE 305

Query: 92  NEPGSDVKSEPLD----ANNDHHQEPPWLELGK 120
           +E  SDVKSEPLD       DHH +P WLELGK
Sbjct: 306 HELRSDVKSEPLDRKTSMQTDHH-DPTWLELGK 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402715723|gb|AFQ93675.1| heat shock transcription factor HSFB2b [Glycine max]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 95/174 (54%), Gaps = 55/174 (31%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASG----QLDN-------VSLP 50
           PELL ENE+LRKEN QL+NELSQLKGLCNNILALMTNYASG    QL++       V +P
Sbjct: 166 PELLDENERLRKENMQLSNELSQLKGLCNNILALMTNYASGFSRQQLESSTSAARTVPVP 225

Query: 51  EGKTVDEL----------------------------DLTPRLFGVSIGAKCARRE----- 77
           EGK   EL                               P+LFGVSIG K  R E     
Sbjct: 226 EGKAALELLPAKHVSSADEAGHVGGAAPCATANAGEAEVPKLFGVSIGLKRCRTECEGEA 285

Query: 78  EEEEQNQLQQQ---------QGENEPGSDVKSEPL--DANNDHHQEPPWLELGK 120
           E E+QNQ+Q +           E + GSDVKSEPL  D ++D   +P WLELGK
Sbjct: 286 EGEDQNQMQTRAQAQTQTQSSQEPDHGSDVKSEPLDGDDSDDQDHDPRWLELGK 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|671866|emb|CAA87075.1| heat shock transcription factor 29 [Glycine max]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 95/174 (54%), Gaps = 55/174 (31%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASG----QLDN-------VSLP 50
           PELL ENE+LRKEN QL+NELSQLKGLCNNILALMTNYASG    QL++       V +P
Sbjct: 125 PELLDENERLRKENMQLSNELSQLKGLCNNILALMTNYASGFSRQQLESSTSAARTVPVP 184

Query: 51  EGKTVDEL----------------------------DLTPRLFGVSIGAKCARRE----- 77
           EGK   EL                               P+LFGVSIG K  R E     
Sbjct: 185 EGKAALELLPAKHVSSADEAGHVGGAAPCATANAGEAEVPKLFGVSIGLKRCRTECEGEA 244

Query: 78  EEEEQNQLQQQ---------QGENEPGSDVKSEPL--DANNDHHQEPPWLELGK 120
           E E+QNQ+Q +           E + GSDVKSEPL  D ++D   +P WLELGK
Sbjct: 245 EGEDQNQMQTRAQAQTQTQSSQEPDHGSDVKSEPLDGDDSDDQDHDPRWLELGK 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497218|ref|XP_003517459.1| PREDICTED: heat stress transcription factor B-2b-like [Glycine max]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 95/174 (54%), Gaps = 55/174 (31%)

Query: 2   PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASG----QLDN-------VSLP 50
           PELL ENE+LRKEN QL+NELSQLKGLCNNILALMTNYASG    QL++       V +P
Sbjct: 182 PELLDENERLRKENMQLSNELSQLKGLCNNILALMTNYASGFSRQQLESSTSAARTVPVP 241

Query: 51  EGKTVDEL----------------------------DLTPRLFGVSIGAKCARRE----- 77
           EGK   EL                               P+LFGVSIG K  R E     
Sbjct: 242 EGKAALELLPAKHVSSADEAGHVGGAAPCATANAGEAEVPKLFGVSIGLKRCRTECEGEA 301

Query: 78  EEEEQNQLQQQ---------QGENEPGSDVKSEPL--DANNDHHQEPPWLELGK 120
           E E+QNQ+Q +           E + GSDVKSEPL  D ++D   +P WLELGK
Sbjct: 302 EGEDQNQMQTRAQAQTQTQSSQEPDHGSDVKSEPLDGDDSDDQDHDPRWLELGK 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2139792	377	AT-HSFB2B [Arabidopsis thalian	0.471	0.151	0.534	3.5e-20
TAIR|locus:2174043	299	HSFB2A "AT5G62020" [Arabidopsi	0.495	0.200	0.475	1.3e-09

TAIR|locus:2139792 AT-HSFB2B [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query:     2 PELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSL-PEGKTVDEL 58
             PEL+ ENE+LRK+N +L  E+++LKGL  NI  LM N+  GQ D   L PEGK +D L
Sbjct:   227 PELVEENERLRKDNERLRKEMTKLKGLYANIYTLMANFTPGQEDCAHLLPEGKPLDLL 284

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2174043 HSFB2A "AT5G62020" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query:     3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQ-LDNVSLPEGKTVDELDLT 61
             ELL ENEKLR +N QLN EL+Q+K +C+NI +LM+NY   Q  D    P G +   ++  
Sbjct:   174 ELLEENEKLRSQNIQLNRELTQMKSICDNIYSLMSNYVGSQPTDRSYSPGGSSSQPMEFL 233

Query:    62 P 62
             P
Sbjct:   234 P 234


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.132   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       104   0.00091  102 3  11 23  0.38    31
                                                     29  0.50    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  113 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.06u 0.11s 11.17t   Elapsed:  00:00:00
  Total cpu time:  11.06u 0.11s 11.17t   Elapsed:  00:00:00
  Start:  Mon May 20 19:07:41 2013   End:  Mon May 20 19:07:41 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	94.33
PRK13922	276	rod shape-determining protein MreC; Provisional	92.26
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	90.53
PRK14872	337	rod shape-determining protein MreC; Provisional	89.7
smart00338	65	BRLZ basic region leucin zipper.	89.16
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	89.07
PF08961	243	DUF1875: Domain of unknown function (DUF1875); Int	88.86
PF07334	76	IFP_35_N: Interferon-induced 35 kDa protein (IFP 3	88.09
PRK13169	110	DNA replication intiation control protein YabA; Re	87.94
PF02344	32	Myc-LZ: Myc leucine zipper domain; InterPro: IPR00	87.8
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	87.75
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	86.79
PF14645	116	Chibby: Chibby family	86.73
KOG3119	269	consensus Basic region leucine zipper transcriptio	85.84
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	84.56
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.4
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	82.97
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	82.93
smart00338	65	BRLZ basic region leucin zipper.	82.85

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=94.33  E-value=0.034  Score=48.86  Aligned_cols=25  Identities=40%  Similarity=0.462  Sum_probs=22.6

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQLK   26 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~mK   26 (121)
                      .+|.+||++|||||..|..||++++
T Consensus        35 ~aLr~EN~~LKkEN~~Lk~eVerLE   59 (420)
T PF07407_consen   35 FALRMENHSLKKENNDLKIEVERLE   59 (420)
T ss_pred             hhHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999873

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=92.26  E-value=0.22  Score=39.59  Aligned_cols=35  Identities=34%  Similarity=0.508  Sum_probs=26.0

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHH---HHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGL---CNNILALMT   37 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKkl---Cn~il~l~s   37 (121)
                      +|.+||++||+||..|..++.+++.+   -+.+..++.
T Consensus        73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~  110 (276)
T PRK13922         73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN  110 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999966444   344444443

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=90.53  E-value=0.35  Score=30.48  Aligned_cols=25  Identities=40%  Similarity=0.589  Sum_probs=22.0

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKG   27 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKk   27 (121)
                      .|..+|++|.+||..|..|+..++.
T Consensus        16 ~Lk~~~~~L~~E~~~L~aev~~L~~   40 (45)
T PF02183_consen   16 SLKAEYDSLKKENEKLRAEVQELKE   40 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999988765

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK14872 rod shape-determining protein MreC; Provisional

Probab=89.70  E-value=0.5  Score=40.63  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=22.4

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGL   28 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKkl   28 (121)
                      .|.+||++||++|..|..+|.++..+
T Consensus        61 ~L~~EN~~Lk~Ena~L~~~l~~~e~l   86 (337)
T PRK14872         61 VLETENFLLKERIALLEERLKSYEEA   86 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999998886643

>smart00338 BRLZ basic region leucin zipper

Probab=89.16  E-value=0.35  Score=31.14  Aligned_cols=30  Identities=27%  Similarity=0.387  Sum_probs=15.3

Q ss_pred             chhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043            4 LLGENEKLRKENAQLNNELSQLKGLCNNIL   33 (121)
Q Consensus         4 L~eENerLRkeN~~L~~ELa~mKklCn~il   33 (121)
                      |..+...|..+|..|..++++++..+..+-
T Consensus        31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk   60 (65)
T smart00338       31 LERKVEQLEAENERLKKEIERLRRELEKLK   60 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555444443

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=89.07  E-value=0.26  Score=35.86  Aligned_cols=26  Identities=46%  Similarity=0.662  Sum_probs=22.0

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQLKG   27 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~mKk   27 (121)
                      .+|.+||.+||.||..|..-|.++..
T Consensus        32 ~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen   32 QELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46889999999999999888887765

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function

Probab=88.86  E-value=0.12  Score=42.96  Aligned_cols=23  Identities=57%  Similarity=0.741  Sum_probs=0.0

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQL   25 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~m   25 (121)
                      -|..||+|||+||.+|..|=+++
T Consensus       140 ~L~aeNErLr~EnkqL~ae~arL  162 (243)
T PF08961_consen  140 FLLAENERLRRENKQLKAENARL  162 (243)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999988

; PDB: 2CRB_A.

>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []

Probab=88.09  E-value=0.56  Score=32.95  Aligned_cols=26  Identities=38%  Similarity=0.479  Sum_probs=23.2

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQLKG   27 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~mKk   27 (121)
                      -+|.+||.||+++...|-.||.++++
T Consensus         3 ~ei~eEn~~Lk~eiqkle~ELq~~~~   28 (76)
T PF07334_consen    3 HEIQEENARLKEEIQKLEAELQQNKR   28 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36889999999999999999999887

This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=87.94  E-value=0.34  Score=35.74  Aligned_cols=24  Identities=50%  Similarity=0.677  Sum_probs=21.7

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQL   25 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~m   25 (121)
                      .+|.+||.+|+-||..|..-|.++
T Consensus        32 ~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169         32 AELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999999876

>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes

Probab=87.80  E-value=0.78  Score=27.81  Aligned_cols=26  Identities=42%  Similarity=0.796  Sum_probs=20.9

Q ss_pred             chhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043            4 LLGENEKLRKENAQLNNELSQLKGLC   29 (121)
Q Consensus         4 L~eENerLRkeN~~L~~ELa~mKklC   29 (121)
                      |..|-+.|||.+.+|..-|.|++.-|
T Consensus         6 L~sekeqLrrr~eqLK~kLeqlrnS~   31 (32)
T PF02344_consen    6 LISEKEQLRRRREQLKHKLEQLRNSC   31 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            67899999999999999999999877

Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.

>TIGR00219 mreC rod shape-determining protein MreC

Probab=87.75  E-value=0.9  Score=37.38  Aligned_cols=23  Identities=43%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQL   25 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~m   25 (121)
                      +|.+||++||++|..|..++..+
T Consensus        70 ~l~~EN~~Lr~e~~~l~~~~~~~   92 (283)
T TIGR00219        70 NLEYENYKLRQELLKKNQQLEIL   92 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            47799999999998887766653

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=86.79  E-value=0.97  Score=34.94  Aligned_cols=35  Identities=31%  Similarity=0.396  Sum_probs=31.1

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMT   37 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s   37 (121)
                      .|..+-++|+.||+++..||...|..|.-+..|.-
T Consensus        85 ~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~  119 (135)
T KOG4196|consen   85 ELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV  119 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            46678899999999999999999999999988864

>PF14645 Chibby: Chibby family

Probab=86.73  E-value=1.8  Score=31.91  Aligned_cols=38  Identities=37%  Similarity=0.368  Sum_probs=34.3

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYA   40 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~   40 (121)
                      ....++.+||++|.+|..|-..+|-.|+=++++++...
T Consensus        68 ~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtett  105 (116)
T PF14645_consen   68 ADGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETT  105 (116)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999998654

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=85.84  E-value=0.68  Score=37.96  Aligned_cols=28  Identities=46%  Similarity=0.582  Sum_probs=20.1

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQLKGLC   29 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~mKklC   29 (121)
                      ..|..||+.||.+..+|..||..+|.+.
T Consensus       225 ~~leken~~lr~~v~~l~~el~~~~~~~  252 (269)
T KOG3119|consen  225 AELEKENEALRTQVEQLKKELATLRRLF  252 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778888888777777777766543

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=84.56  E-value=0.82  Score=29.40  Aligned_cols=32  Identities=38%  Similarity=0.450  Sum_probs=22.4

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCNNILA   34 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~   34 (121)
                      +|.+....|..+|..|..++..++..|..|..
T Consensus        30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~   61 (64)
T PF00170_consen   30 ELEEKVEELESENEELKKELEQLKKEIQSLKS   61 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666777777777777777777777766643

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.40  E-value=3.1  Score=28.42  Aligned_cols=29  Identities=34%  Similarity=0.452  Sum_probs=13.6

Q ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043            5 LGENEKLRKENAQLNNELSQLKGLCNNIL   33 (121)
Q Consensus         5 ~eENerLRkeN~~L~~ELa~mKklCn~il   33 (121)
                      .++|+.|+.+|.+|..|-...+..-+.|+
T Consensus        38 ~~e~~~L~~en~~L~~e~~~~~~rl~~LL   66 (72)
T PF06005_consen   38 KEENEELKEENEQLKQERNAWQERLRSLL   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555444444434333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=82.97  E-value=2.9  Score=26.84  Aligned_cols=27  Identities=48%  Similarity=0.585  Sum_probs=22.5

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQLKGL   28 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~mKkl   28 (121)
                      ..|..+|..|+.++..|..|+..++..
T Consensus        36 ~~L~~en~~L~~~~~~L~~~~~~L~~e   62 (64)
T PF00170_consen   36 EELESENEELKKELEQLKKEIQSLKSE   62 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            357889999999999999999888753

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=82.93  E-value=1.7  Score=31.24  Aligned_cols=34  Identities=35%  Similarity=0.516  Sum_probs=30.6

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALM   36 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~   36 (121)
                      +|.-+|..|.+||..|..+|..++.--++++.++
T Consensus        53 ~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll   86 (87)
T PF12709_consen   53 ELENENKALKRENEQLKKKLDTEREEKQELLKLL   86 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5778999999999999999999999888888775

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>smart00338 BRLZ basic region leucin zipper

Probab=82.85  E-value=3  Score=26.73  Aligned_cols=29  Identities=41%  Similarity=0.540  Sum_probs=26.0

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQLKGLCN   30 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~mKklCn   30 (121)
                      ..|..+|..|+.+...|..|+..++.++.
T Consensus        36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338       36 EQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35889999999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	92.56
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	92.45
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	92.13
2j5u_A	255	MREC protein; bacterial cell shape determining pro	91.78
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	88.1
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	85.93
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	85.63
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	84.97
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	84.55
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	84.25
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	82.93
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	82.05
2wt7_B	90	Transcription factor MAFB; transcription, transcri	82.04
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	80.84
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	80.7
3m48_A	33	General control protein GCN4; leucine zipper, synt	80.41
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	80.29
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	80.05

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=92.56  E-value=0.05  Score=37.59  Aligned_cols=27  Identities=52%  Similarity=0.694  Sum_probs=16.2

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLC   29 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklC   29 (121)
                      .|..||.+||.+...|..|+..+|.+.
T Consensus        47 ~Le~EN~~Lr~~v~~L~~E~~~Lr~ll   73 (87)
T 1hjb_A           47 ELTAENERLQKKVEQLSRELSTLRNLF   73 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666666666665543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=92.45  E-value=0.05  Score=36.88  Aligned_cols=26  Identities=54%  Similarity=0.731  Sum_probs=19.1

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGL   28 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKkl   28 (121)
                      .|..||.+|+.+..+|..|++.+|.+
T Consensus        47 ~L~~eN~~L~~~v~~L~~E~~~Lr~l   72 (78)
T 1gu4_A           47 ELTAENERLQKKVEQLSRELSTLRNL   72 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777777777777777777754

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=92.13  E-value=0.26  Score=31.39  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNY   39 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y   39 (121)
                      +|.++-+.|..+|..|..|+..++..+..+-.+|..|
T Consensus        27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~H   63 (63)
T 2wt7_A           27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5778889999999999999999999998888887643

>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}

Probab=91.78  E-value=0.12  Score=40.56  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=24.4

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCNNILA   34 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~   34 (121)
                      .|.+||++||++|..|..++.++..+-.+.-.
T Consensus        23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~r   54 (255)
T 2j5u_A           23 NTYTENQHLKERLEELAQLESEVADLKKENKD   54 (255)
T ss_dssp             ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57789999999999999999988887644433

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=88.10  E-value=0.9  Score=29.00  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=27.8

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMT   37 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s   37 (121)
                      +|..+.+.|..+|..|..+++++++-+..+-.+|.
T Consensus        27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778888888888888888888888777777764

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=85.93  E-value=0.78  Score=28.74  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=17.1

Q ss_pred             chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042043            4 LLGENEKLRKENAQLNNELSQLKGLCNNILAL   35 (121)
Q Consensus         4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l   35 (121)
                      |.++-+.|..+|..|.+|+..++.....|-.+
T Consensus        27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~   58 (61)
T 1t2k_D           27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555444433

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=85.63  E-value=0.026  Score=40.54  Aligned_cols=35  Identities=34%  Similarity=0.404  Sum_probs=25.2

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMT   37 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s   37 (121)
                      .|..+.++|+.||..|..|+..||..|+.+..|..
T Consensus        69 ~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~  103 (107)
T 3a5t_A           69 ELQQEVEKLASENASMKLELDALRSKYEALQNFAR  103 (107)
T ss_dssp             TTSSTTTTTTSTTSHHHHTTTSSSSCC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999987753

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=84.97  E-value=0.57  Score=29.41  Aligned_cols=29  Identities=31%  Similarity=0.338  Sum_probs=24.7

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQLKGLCN   30 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~mKklCn   30 (121)
                      .+|..+...|..+|..|..++..++..|.
T Consensus        25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~~   53 (55)
T 1dh3_A           25 KSLENRVAVLENQNKTLIEELKALKDLYS   53 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35778888999999999999999988764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=84.55  E-value=1.4  Score=30.26  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042043            4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYA   40 (121)
Q Consensus         4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~   40 (121)
                      +..+.+.|.+||..|..++.++++....+..++..+-
T Consensus        41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p   77 (87)
T 1hjb_A           41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP   77 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            5667889999999999999999999998888887643

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=84.25  E-value=1.8  Score=27.07  Aligned_cols=26  Identities=42%  Similarity=0.516  Sum_probs=24.0

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGL   28 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKkl   28 (121)
                      .|..+|..|+.+...|..|++++|.+
T Consensus        33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~   58 (61)
T 1t2k_D           33 DLSSLNGQLQSEVTLLRNEVAQLKQL   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999865

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=82.93  E-value=2.3  Score=26.62  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=23.9

Q ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042043            6 GENEKLRKENAQLNNELSQLKGLCNNILALMTNY   39 (121)
Q Consensus         6 eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y   39 (121)
                      .+.+.||+||..|..+...++..+.++-.=+.+|
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~   52 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY   52 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5677777777777777777777777766555444

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=82.05  E-value=1  Score=28.94  Aligned_cols=28  Identities=36%  Similarity=0.476  Sum_probs=22.7

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCN   30 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn   30 (121)
                      +|..+-+.|..+|..|..|+++++.++.
T Consensus        34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           34 QLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5777888999999999999999987653

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=82.04  E-value=1.1  Score=31.25  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=23.6

Q ss_pred             chhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 042043            4 LLGENEKLRKENAQLNNELSQLKGLCNNI   32 (121)
Q Consensus         4 L~eENerLRkeN~~L~~ELa~mKklCn~i   32 (121)
                      |..+-++|++||..+.+|+..||..|..+
T Consensus        60 L~~e~~~L~~e~~~~~~e~d~~k~k~~~L   88 (90)
T 2wt7_B           60 LIQQVEQLKQEVSRLARERDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45567888999999999999998888765

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=80.84  E-value=0.32  Score=30.74  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=19.6

Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042043            3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALM   36 (121)
Q Consensus         3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~   36 (121)
                      +|.++-+.|..+|..|..++..++..+..|-.+|
T Consensus        26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l   59 (62)
T 1jnm_A           26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQKV   59 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666667777666666666655544443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=80.70  E-value=0.93  Score=28.54  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQLKGLC   29 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~mKklC   29 (121)
                      ..|..+|..|+.+-..|..|++++|.+.
T Consensus        32 ~~L~~~n~~L~~~v~~L~~e~~~Lk~~l   59 (62)
T 1jnm_A           32 KTLKAQNSELASTANMLREQVAQLKQKV   59 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3688999999999999999999987653

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=80.41  E-value=1.9  Score=25.45  Aligned_cols=28  Identities=36%  Similarity=0.457  Sum_probs=24.5

Q ss_pred             CcchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043            2 PELLGENEKLRKENAQLNNELSQLKGLC   29 (121)
Q Consensus         2 a~L~eENerLRkeN~~L~~ELa~mKklC   29 (121)
                      ..|.+.-|.|-.+|..|..|.+++|.+-
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll   30 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKKLV   30 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            4578888999999999999999999763

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=80.29  E-value=0.78  Score=30.42  Aligned_cols=22  Identities=41%  Similarity=0.474  Sum_probs=14.0

Q ss_pred             chhhhHHHHHhhHHHHHHHHHH
Q 042043            4 LLGENEKLRKENAQLNNELSQL   25 (121)
Q Consensus         4 L~eENerLRkeN~~L~~ELa~m   25 (121)
                      |..||+.||..+..|..||..+
T Consensus        48 l~~en~~Lr~~i~~L~~El~~l   69 (70)
T 1gd2_E           48 TTLENDQLRQKVRQLEEELRIL   69 (70)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            4556666777777776666543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=80.05  E-value=1.1  Score=30.10  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042043            4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTN   38 (121)
Q Consensus         4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~   38 (121)
                      +...-+.|.+||..|..++.++++-..-|-.++..
T Consensus        41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q   75 (78)
T 1gu4_A           41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677899999999999999999887777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00