Citrus Sinensis ID: 042102

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MDNNSNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV
Secondary Structure (PSIPRED)
ccccccccEEEEEccccHHHHHHHHcccEEEEccccccHHHHHHHcccccEEEEEcccccccHHHHHHccccEEEEEEcccccHHcHHHHHHcccEEcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHccEEEEEccccccccccccHHHHHHccccEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccHHHHHHHHHcccEEEEcccccHHHHHHHHHccccEEEEEccccccHHHHHHccccEEEEEEccccccccHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccEEEEcccccEEEEEcccHHHHHHHHHHHHcccEEEEEcHHHHHHcccEEcccHHHHHccccEEEEcccccccccccEcHHHHccccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccHHHcccccEEEcccccccEHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MDNNSNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCsvgldkidlarckekgirvantpdvltddVADLAIGLILAVLRRICEsdryvrsgewkkgefkmttkftgksvgilgMGRIGTAIAKRAEAFDciigynsrtekpnlnykyypnlidlaSNCQILVVACSLTEETQHIVNRQVinalgpkgvlinigrgllVDEHELVSALLQGrlggagldvfehepdvpeeliglenvvllphvASATVETRKAMADLVVGNLqahfgkkplltpvv
Flexible Loop (DISEMBL)
MDNNSNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGldkidlarckekgirvantpdvltddvADLAIGLILAVLRRICEsdryvrsgewkkgefkmttkftgksvgilGMGRIGTAIAKRAEAFDCIIGynsrtekpnlnYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLqahfgkkplltpvv
Low Complexity Region (SEG)
MDNNSNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQavvgsaaagadaELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSallqgrlggaglDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV
Disordered region (IsUnstruct)
******NIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFG*********
Disordered Region (DISOPRED)
*****NN***LMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV*
Disordered Region (DISEMBL)
MDNNSNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV
Disordered Region (DISPRO)
*****NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNNSNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q9CA90	313	Glyoxylate/hydroxypyruvat	yes	no	0.981	0.993	0.720	1e-125
Q9LE33	323	Glyoxylate/hydroxypyruvat	no	no	0.996	0.978	0.471	1e-80
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.835	0.788	0.433	8e-57
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.804	0.763	0.443	2e-56
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.807	0.773	0.456	2e-51
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.807	0.768	0.426	4e-50
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.760	0.710	0.423	8e-50
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.883	0.843	0.425	7e-48
C5A1V0	334	Glyoxylate reductase OS=T	yes	no	0.804	0.763	0.436	2e-47
B2VCD1	321	Glyoxylate/hydroxypyruvat	yes	no	0.835	0.825	0.4	7e-47

>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1

 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/311 (72%), Positives = 264/311 (84%)

Query: 7   NIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELI 66
           +I VLM+CP+S+YLE E+EK F + + W   +K   + TH++SI+AVVG+A+AGADA+LI
Sbjct: 3   SIGVLMMCPMSSYLENELEKRFNLLRFWTSPEKSVLLETHRNSIRAVVGNASAGADAQLI 62

Query: 67  ESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES 126
             LP LEIV++ SVGLDKIDL +CKEKGIRV NTPDVLT+DVADLAIGLILA+LRR+CE 
Sbjct: 63  SDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCEC 122

Query: 127 DRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN 186
           DRYVRSG+WK+GEF++TTKF+GKSVGI+G+GRIGTAIAKRAEAF C I Y SRT KP++ 
Sbjct: 123 DRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVA 182

Query: 187 YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV 246
           YKYYP ++DLA N  ILVVAC LTE+T+HIV+RQV++ALG KGVLINIGRG  VDE EL+
Sbjct: 183 YKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQELI 242

Query: 247 SALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306
            AL +GRLGGA LDVFE EP VPEEL GLENVVLLPHV S TVETR AMADLVVGNL+AH
Sbjct: 243 KALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLEAH 302

Query: 307 FGKKPLLTPVV 317
           F  K LLTPVV
Sbjct: 303 FSGKSLLTPVV 313

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1

 Score =  300 bits (767), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/320 (47%), Positives = 214/320 (66%), Gaps = 4/320 (1%)

Query: 1   MDNNSNNIIVLMVCPVS-NYLEQEIEKSFKVF--KLWHFEDKEQFINTHKDSIQAVVGSA 57
           M  +S   +VL+  P S  ++++ + + F+         E    F   H  S +A V S 
Sbjct: 1   MAESSEPPVVLLHRPPSLTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISG 60

Query: 58  AAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLIL 117
                 EL+  LP L+I+   SVG+D IDLA CK +GI + N  +  +DDVAD A+GL++
Sbjct: 61  RLPVTDELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLI 120

Query: 118 AVLRRICESDRYVRSGEWKK-GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY 176
           +VLRRI  +DRYVRSG W K G+F++ +K +GK VGI+G+G IG+ +AKR E+F C+I Y
Sbjct: 121 SVLRRIPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISY 180

Query: 177 NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236
           NSR++K +  Y+YY +++ LA N  +LV+ CSLT+ET HIVNR+V+  LG  GV+IN+GR
Sbjct: 181 NSRSQKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGR 240

Query: 237 GLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMA 296
           G L+DE E+V  L+ G +GGAGLDVFE+EP VP+EL GL+NVVL PH A AT  +   +A
Sbjct: 241 GKLIDEKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVA 300

Query: 297 DLVVGNLQAHFGKKPLLTPV 316
            + + NL+A F  +PLL+PV
Sbjct: 301 QIALANLKAFFSNRPLLSPV 320

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  221 bits (562), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 120/277 (43%), Positives = 169/277 (61%), Gaps = 12/277 (4%)

Query: 39  KEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA 98
           +E+ +   KD + A+V   +   D E+ E+ P+L IVA  +VG D ID+     +GI V 
Sbjct: 36  REKLLEKVKD-VDALVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVT 94

Query: 99  NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKF------TGKSVG 152
           NTPDVLT+  AD A  L+LA  R + + D++VRSGEWK+       K+       GK++G
Sbjct: 95  NTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIG 154

Query: 153 ILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACS 208
           I+G GRIG AIA+RA+ F+  I Y SRT K      L  +Y P L ++      +++A  
Sbjct: 155 IVGFGRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAEYRP-LEEVLKESDFVILAVP 213

Query: 209 LTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV 268
           LT+ET +++N + +  + P  +L+NI RG +VD   L+ AL +G + GAGLDVFE EP  
Sbjct: 214 LTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYY 273

Query: 269 PEELIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
            EEL  L+NVVL PH+ SAT E R+AMA+LV  NL A
Sbjct: 274 NEELFSLDNVVLTPHIGSATFEAREAMAELVARNLIA 310

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/266 (44%), Positives = 165/266 (62%), Gaps = 11/266 (4%)

Query: 50  IQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVA 109
           + A+V   +   DAE+ ++ P+L+IVA  +VG D ID+    + G+ + NTPDVLT+  A
Sbjct: 46  VDALVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATA 105

Query: 110 DLAIGLILAVLRRICESDRYVRSGEWKKGEFK------MTTKFTGKSVGILGMGRIGTAI 163
           D+A  L+LA  RR+ E+D++VRSGEWKK          +     G+++GI+G GRIG AI
Sbjct: 106 DMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAI 165

Query: 164 AKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219
           A+RA+ F   I YNSRT KP     L  ++ P L +L      +V+   LT+ET H++N 
Sbjct: 166 ARRAKGFGMRILYNSRTRKPEVEKELGAEFMP-LDELLKESDFVVLVVPLTKETYHMINE 224

Query: 220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVV 279
           + +  + P  +L+NI RG +VD   LV AL +G + GAGLDVFE EP   EEL  L+NVV
Sbjct: 225 ERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELFSLDNVV 284

Query: 280 LLPHVASATVETRKAMADLVVGNLQA 305
           L PH+ SAT   R+ MA+LV  NL A
Sbjct: 285 LAPHIGSATYGAREGMAELVARNLIA 310

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 160/265 (60%), Gaps = 9/265 (3%)

Query: 50  IQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVA 109
           + A+V       D EL+E+ PKL+I+A  +VG D ID+    ++GI V NTP VLTD  A
Sbjct: 46  VDALVTLVTDKVDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATA 105

Query: 110 DLAIGLILAVLRRICESDRYVRSGEWKKGE------FKMTTKFTGKSVGILGMGRIGTAI 163
           DLA  L+LAV RRI E+D +VRSGEWKK E        +     GK++GI+G GRIG A+
Sbjct: 106 DLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQAL 165

Query: 164 AKRAEAFDCIIGYNSRTEKPNLNYKYYPNLID---LASNCQILVVACSLTEETQHIVNRQ 220
           AKRA+ F   I Y SRT KP    +     +D   L      + +   LT+ET H++  +
Sbjct: 166 AKRAKGFGMKIIYYSRTRKPEAEEEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEK 225

Query: 221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVL 280
            +  + P  +LIN  RG +VD + L+ AL +G + GAGLDVFE EP   EEL  L+NVVL
Sbjct: 226 ELKLMKPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVL 285

Query: 281 LPHVASATVETRKAMADLVVGNLQA 305
            PH+ SAT E R+ MA+LV  NL A
Sbjct: 286 APHIGSATHEAREGMAELVAKNLIA 310

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  198 bits (504), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/265 (42%), Positives = 160/265 (60%), Gaps = 9/265 (3%)

Query: 50  IQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVA 109
           + A+V   +   D+E+ ++ P+L IVA  +VG D ID+     +GI V NTPDVLTD  A
Sbjct: 46  VDALVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATA 105

Query: 110 DLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKF------TGKSVGILGMGRIGTAI 163
           D A  L+LA  RR+ E+D + RSGEWK+       ++       GK++GI+G GRIG A+
Sbjct: 106 DFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAV 165

Query: 164 AKRAEAFDCIIGYNSRTEKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQ 220
           A+RA  F   I Y SR+ KP    +    + +L DL      +V+A  LT+ETQ+++N +
Sbjct: 166 ARRARGFGMRILYYSRSRKPEAEKELGAEFRSLEDLLRESDFVVLAVPLTKETQYMINEE 225

Query: 221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVL 280
            +  +    +L+NI RG +VD   L+ AL +G + GAGLDV+E EP   EEL  L+NVVL
Sbjct: 226 RLRLMKKTAILVNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVL 285

Query: 281 LPHVASATVETRKAMADLVVGNLQA 305
            PH+ SAT   R+ MA+LV  NL A
Sbjct: 286 APHIGSATYGAREGMAELVARNLIA 310

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 108/255 (42%), Positives = 154/255 (60%), Gaps = 14/255 (5%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           DAE++++ P L++++T SVG D ID+    ++GI V +TP VLTD VA+  +GLILAV R
Sbjct: 60  DAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTR 119

Query: 122 RICESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY-- 176
           RI E+D+ +R+G+W K     F    +  GK++G++G+GRIG A AKR  +FD  I Y  
Sbjct: 120 RIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKILYYD 179

Query: 177 -----NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVL 231
                +  T  PN+ +    +L  L     I+ +   LT+ET H++N + +  +     L
Sbjct: 180 IERRWDVETVIPNMEFT---DLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYL 236

Query: 232 INIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVE 290
           IN  RG +VD   LV AL +G + GA LDVFE EP  P   L   +NVVL PH+ASAT+E
Sbjct: 237 INTARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLTKFDNVVLAPHIASATIE 296

Query: 291 TRKAMADLVVGNLQA 305
            R+ MA+L   NL A
Sbjct: 297 ARQRMAELAARNLIA 311

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  191 bits (485), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 125/294 (42%), Positives = 173/294 (58%), Gaps = 14/294 (4%)

Query: 23  EIEKSFKVFKLWHFE---DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCS 79
           +IE+ F++  LW  E    K+  I   KD   A+V       DAE+ E+ PKL IVA  +
Sbjct: 18  KIEEHFEL-DLWKDEAPPSKKVIIERVKDC-DALVSLLTDPIDAEVFEAAPKLRIVAQYA 75

Query: 80  VGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE 139
           VG D ID+    ++GI V NTP VLT+  AD A  L++A  RR+ E+DRYVR G+WK   
Sbjct: 76  VGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAW 135

Query: 140 FKMTT---KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNS-RTE--KPNLNYKYYPN 192
             M        G+++GI+GMGRIG A+A+RA+ F   I+ Y+S R E  +  L  +Y P 
Sbjct: 136 HPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYDSIRREDFEKELGVEYVP- 194

Query: 193 LIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG 252
           L  L      + +   LTEET H++  + +  +    +L+N  RG +VD+  L  AL +G
Sbjct: 195 LEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEG 254

Query: 253 RLGGAGLDVFEHEPDVPEE-LIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
            + GAGLDVFE EP  P++ L+ LENVVL PH ASA+ ETR  MA++V  NL A
Sbjct: 255 WIAGAGLDVFEQEPIPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAENLIA 308

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/266 (43%), Positives = 160/266 (60%), Gaps = 11/266 (4%)

Query: 50  IQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVA 109
           + A+V   +   D E+ ++ P+L IVA  +VG D +D+     +GI V NTPDVLT+  A
Sbjct: 46  VDALVTMLSERIDGEVFDNAPRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATA 105

Query: 110 DLAIGLILAVLRRICESDRYVRSGEWK-KGEFKMTTKF-----TGKSVGILGMGRIGTAI 163
           D A  L+LA  RR+ E+D + RSGEWK KG       F      GK++GI+G GRIG A+
Sbjct: 106 DFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAV 165

Query: 164 AKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219
           A+RA+ F   I Y SRT KP     L  ++ P L +L      +V+A  LT+ET H++  
Sbjct: 166 ARRAKGFGMRILYYSRTRKPEAEEELKAEFKP-LEELLKESDFVVLAVPLTKETYHMIGE 224

Query: 220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVV 279
           + +  + P  +L+NI RG +VD   L+ AL +G + GAGLDVFE EP   EEL  L+NV+
Sbjct: 225 RELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVI 284

Query: 280 LLPHVASATVETRKAMADLVVGNLQA 305
           L PH+ SAT   R+ MA+LV  NL A
Sbjct: 285 LAPHIGSATFGAREGMAELVARNLIA 310

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B2VCD1|GHRB_ERWT9 Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1

 Score =  187 bits (476), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/280 (40%), Positives = 158/280 (56%), Gaps = 15/280 (5%)

Query: 43  INTHKDSIQAVVGSAAAGA--DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANT 100
           I  H+D  +   G   +G   DAE +   PKL + ++ SVG D  D+A   ++G+ + +T
Sbjct: 36  IAKHEDVFRQAEGILGSGGKVDAEFLRQAPKLRVASSISVGYDNFDVAALNDRGVLLMHT 95

Query: 101 PDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTG-----KSVGILG 155
           P VLT+ VAD  + L+L+  RR+ E    V+SGEW+     +++ + G     K +GILG
Sbjct: 96  PTVLTETVADTMMALVLSSARRVVEMAERVKSGEWRG---SISSDWFGIDVHHKKLGILG 152

Query: 156 MGRIGTAIAKRAE-AFDCIIGYNSRTEKPNLNYKY---YPNLIDLASNCQILVVACSLTE 211
           MGRIG A+A+RA   F   I YN+R        ++   Y +L  L +    L ++  LTE
Sbjct: 153 MGRIGLALAQRAHLGFGMPILYNARKHHDEAEQRFDAEYCDLDTLLAESDFLCISLPLTE 212

Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP-DVPE 270
           +T H++ R+ +  +    +LIN GRG +VDE  L++AL  G L  AGLDVFE EP  V  
Sbjct: 213 QTHHLIGREQLAKMKRSAILINAGRGPVVDEQALIAALKDGTLHAAGLDVFEQEPLPVSS 272

Query: 271 ELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKK 310
           EL+ L NVV LPH+ SAT ETR  MA   V NL A    K
Sbjct: 273 ELLALRNVVALPHIGSATHETRYGMAKDAVDNLIAALNGK 312

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
255549954	314	glycerate dehydrogenase, putative [Ricin	0.971	0.980	0.747	1e-133
224073961	314	predicted protein [Populus trichocarpa]	0.981	0.990	0.724	1e-130
449448024	346	PREDICTED: glyoxylate/hydroxypyruvate re	0.981	0.898	0.713	1e-129
448278786	313	hydroxyphenylpyruvate reductase [Salvia	0.977	0.990	0.719	1e-128
449519625	346	PREDICTED: LOW QUALITY PROTEIN: glyoxyla	0.981	0.898	0.710	1e-128
359482922	313	PREDICTED: glyoxylate reductase isoform	0.981	0.993	0.733	1e-128
212374928	333	Chain A, Structure Of Hydroxyphenylpyruv	0.977	0.930	0.719	1e-128
62816284	313	hydroxyphenylpyruvate reductase (HPPR) [	0.977	0.990	0.719	1e-128
255549956	314	glycerate dehydrogenase, putative [Ricin	0.981	0.990	0.708	1e-127
72256935	313	putative hydroxyphenylpyruvate reductase	0.977	0.990	0.703	1e-127

>gi|255549954|ref|XP_002516028.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223544933|gb|EEF46448.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/309 (74%), Positives = 273/309 (88%), Gaps = 1/309 (0%)

Query: 10  VLMVCP-VSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIES 68
           VLM CP +  YL +++EK F +++  +  DK QF+N+HK+SI+AVVG+A  GADAELI+ 
Sbjct: 6   VLMTCPPIYPYLIEQLEKRFTLYQFQNVPDKTQFLNSHKNSIRAVVGNAGFGADAELIDQ 65

Query: 69  LPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDR 128
           LPKLEIV++ SVGLDK+DLA+CK KGIRV NTPDVLTDDVADLAIGL+LAVLRR+CESDR
Sbjct: 66  LPKLEIVSSYSVGLDKVDLAKCKGKGIRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDR 125

Query: 129 YVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK 188
           YVRSG+W+KG++K+TTKFTGKSVGI+G+GRIG AIAKRAEAF C I Y +R+EKP++ YK
Sbjct: 126 YVRSGQWRKGDYKLTTKFTGKSVGIIGLGRIGMAIAKRAEAFSCPISYFARSEKPDMKYK 185

Query: 189 YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSA 248
           YYP++++LA+NCQILVVAC+LTEET HIVNR+VINALGPKGVLINIGRG  VDE ELVSA
Sbjct: 186 YYPSVVELAANCQILVVACALTEETHHIVNREVINALGPKGVLINIGRGPHVDEPELVSA 245

Query: 249 LLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFG 308
           LL+GRLGGAGLDVFE EP+VPE+L  LENVVLLPHV S TVETR AMADLVVGNL+AHF 
Sbjct: 246 LLEGRLGGAGLDVFEDEPNVPEQLFSLENVVLLPHVGSGTVETRTAMADLVVGNLEAHFL 305

Query: 309 KKPLLTPVV 317
            KPLLTPVV
Sbjct: 306 NKPLLTPVV 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073961|ref|XP_002304205.1| predicted protein [Populus trichocarpa] gi|118488851|gb|ABK96235.1| unknown [Populus trichocarpa x Populus deltoides] gi|222841637|gb|EEE79184.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/312 (72%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 7   NIIVLMVCP-VSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAEL 65
           +I VLM CP    YL +++EK F +FK     DK  F+N++K SI+AVVG+A+AGADA+L
Sbjct: 3   SIGVLMTCPPFDPYLVEQLEKRFTLFKFHSIPDKAHFLNSNKASIRAVVGNASAGADAQL 62

Query: 66  IESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE 125
           I  LP LEIV++ SVGLDKIDLA+C+E+GIRV NTPDVLTDDVADLAIGL+LAVLRR+C 
Sbjct: 63  IHQLPNLEIVSSFSVGLDKIDLAKCRERGIRVTNTPDVLTDDVADLAIGLMLAVLRRLCP 122

Query: 126 SDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL 185
           SDRYVRSG+WK+G++K+TTKFTGKSVGI+G+GRIG AIAKRAEAF C I Y++R EK ++
Sbjct: 123 SDRYVRSGQWKRGDYKLTTKFTGKSVGIIGLGRIGLAIAKRAEAFSCPISYHTRAEKSDV 182

Query: 186 NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
            YKYYP++++LA+NCQILVVAC+LTEET+HI+NR+VINALGPKGVLINIGRG  VDE EL
Sbjct: 183 KYKYYPSVVELAANCQILVVACALTEETRHIINREVINALGPKGVLINIGRGPHVDEPEL 242

Query: 246 VSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
           VSAL++GRLGGAGLDVF+ EP+VPEEL GLENVVLLPHV S T+ETRK MADLVVGNL+A
Sbjct: 243 VSALVEGRLGGAGLDVFQDEPNVPEELFGLENVVLLPHVGSGTMETRKEMADLVVGNLEA 302

Query: 306 HFGKKPLLTPVV 317
           HF  KPLLTPV+
Sbjct: 303 HFLNKPLLTPVL 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448024|ref|XP_004141766.1| PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2-like [Cucumis sativus]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/311 (71%), Positives = 269/311 (86%)

Query: 7   NIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELI 66
           +I VLM CP++ YLE E++K F ++K W F  K QF+  H +SI+AVVG+A+AGADA LI
Sbjct: 36  SIGVLMTCPMNAYLEGELQKRFNLYKFWQFPQKTQFLTEHCNSIRAVVGNASAGADATLI 95

Query: 67  ESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES 126
           ++LPKLEIV++ SVGLDKIDL +CKEKGIRV NTPDVLT+DVADLAIGLI+AVLRR+CE 
Sbjct: 96  DALPKLEIVSSFSVGLDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCEC 155

Query: 127 DRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN 186
           DRYVRSG+WK G +K+TTKF+GKSVGI+G+GRIG AIAKRAEAF+C I Y SRT+K +  
Sbjct: 156 DRYVRSGKWKIGNYKLTTKFSGKSVGIIGLGRIGLAIAKRAEAFNCPISYYSRTKKEDTK 215

Query: 187 YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV 246
           YKYY NL++LASN  IL+VAC+LT+ET HIVNR+VI+ALGPKGVLINIGRG  VDE ELV
Sbjct: 216 YKYYSNLLELASNSDILIVACALTKETHHIVNREVIDALGPKGVLINIGRGPHVDEPELV 275

Query: 247 SALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306
           +AL++GRLGGAGLDVFE+EP+VP+EL  LENVVL+PH+ S TVETRK MADLV+GNL++H
Sbjct: 276 AALVEGRLGGAGLDVFENEPEVPQELFALENVVLVPHIGSGTVETRKEMADLVLGNLESH 335

Query: 307 FGKKPLLTPVV 317
           F  KPLLTPVV
Sbjct: 336 FSNKPLLTPVV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|448278786|gb|AGE44245.1| hydroxyphenylpyruvate reductase [Salvia officinalis]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/310 (71%), Positives = 266/310 (85%)

Query: 8   IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIE 67
           I VLM+CP+++YLEQE++K FK+ + W    + +F+    DSI+AVVG+A+AGADA LI+
Sbjct: 4   IGVLMMCPMNSYLEQELDKRFKLLRYWTQPKQSEFLAQQADSIRAVVGNASAGADAALID 63

Query: 68  SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESD 127
           +LPKLEIV+  SVGLDK+DL +CKEKG+RV NTPDVLTDDVADLAIGLILAVLRRICE D
Sbjct: 64  ALPKLEIVSNFSVGLDKVDLVKCKEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECD 123

Query: 128 RYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY 187
           +YVR G WK G+FK+TTKF+GK VGI+G+GRIG A+A+RAEAFDC I Y SR++K N NY
Sbjct: 124 KYVRRGAWKLGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPINYYSRSKKANTNY 183

Query: 188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS 247
            YY ++++LASN  ILVVAC+LT ET HIVNR+VI+ALGPKGVLINIGRG  VDE ELVS
Sbjct: 184 TYYGSIVELASNSDILVVACALTPETTHIVNREVIDALGPKGVLINIGRGPHVDEAELVS 243

Query: 248 ALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
           AL++GRLGGAGLDVFE EP+VPE+L GLENVVLLPHV S TVETRKAMADLV+GNL+AHF
Sbjct: 244 ALVEGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKAMADLVLGNLEAHF 303

Query: 308 GKKPLLTPVV 317
             KPLLTPVV
Sbjct: 304 SSKPLLTPVV 313

Source: Salvia officinalis

Species: Salvia officinalis

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519625|ref|XP_004166835.1| PREDICTED: LOW QUALITY PROTEIN: glyoxylate/hydroxypyruvate reductase A HPR2-like [Cucumis sativus]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/311 (71%), Positives = 268/311 (86%)

Query: 7   NIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELI 66
           +I VLM CP++ YLE E++K F ++K W F  K QF+  H +SI+AVVG+A+AGADA LI
Sbjct: 36  SIGVLMTCPMNAYLEGELQKRFNLYKFWQFPQKTQFLTEHCNSIRAVVGNASAGADATLI 95

Query: 67  ESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES 126
           ++LPKLEIV++ SVGLDKIDL +CKEKGIRV NTPDVLT+DVADLAIGLI+AVLRR+CE 
Sbjct: 96  DALPKLEIVSSFSVGLDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCEC 155

Query: 127 DRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN 186
           DRYVRSG+WK G +K+TTKF+GKSVGI+G+GRIG AIAKRAEAF+C I Y SRT+K +  
Sbjct: 156 DRYVRSGKWKIGNYKLTTKFSGKSVGIIGLGRIGLAIAKRAEAFNCPISYYSRTKKEDTK 215

Query: 187 YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV 246
           YKYY NL++LASN  IL+VAC+LT+ET HIVNR+VI+ALGPKGVLINIGRG  VDE ELV
Sbjct: 216 YKYYSNLLELASNSDILIVACALTKETHHIVNREVIDALGPKGVLINIGRGPHVDEPELV 275

Query: 247 SALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306
           +AL++GRLGGAGLDVFE+EP+VP+EL  LENVVL+PH+ S TVETRK MADLV+ NL++H
Sbjct: 276 AALVEGRLGGAGLDVFENEPEVPQELFALENVVLVPHIGSGTVETRKEMADLVLXNLESH 335

Query: 307 FGKKPLLTPVV 317
           F  KPLLTPVV
Sbjct: 336 FSNKPLLTPVV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482922|ref|XP_003632860.1| PREDICTED: glyoxylate reductase isoform 2 [Vitis vinifera] gi|147843670|emb|CAN84153.1| hypothetical protein VITISV_025327 [Vitis vinifera]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/311 (73%), Positives = 272/311 (87%)

Query: 7   NIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELI 66
           +I VL+ CP++ YLEQE++K FK+F+ W F         H +SI+AVVG++  GADA++I
Sbjct: 3   SIGVLLTCPMNPYLEQELDKRFKLFRFWDFPSANDLFREHSNSIRAVVGNSFIGADAQMI 62

Query: 67  ESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES 126
           E+LPK+EIV++ SVGLDKIDL RCKEKGIRV NTPDVLT+DVADLA+ LILA LRRICES
Sbjct: 63  EALPKMEIVSSFSVGLDKIDLVRCKEKGIRVTNTPDVLTEDVADLALALILATLRRICES 122

Query: 127 DRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN 186
           DRYVRSG WKKG+FK+TTKFTGKSVGI+G+GRIG+AIAKRAE F C I Y+SRTEKP  N
Sbjct: 123 DRYVRSGSWKKGDFKLTTKFTGKSVGIIGLGRIGSAIAKRAEGFSCPISYHSRTEKPGTN 182

Query: 187 YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV 246
           YKYYP++++LASNCQILVVAC+LT ET+HI+NR+VINALGPKGV+INIGRGL VDE ELV
Sbjct: 183 YKYYPSVVELASNCQILVVACALTPETRHIINREVINALGPKGVVINIGRGLHVDEPELV 242

Query: 247 SALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306
           SAL++GRLGGAGLDVFE+EP+VPEEL+ ++NVVLLPHV S TVETRK MADLV+GNL+AH
Sbjct: 243 SALVEGRLGGAGLDVFENEPNVPEELLAMDNVVLLPHVGSGTVETRKDMADLVLGNLEAH 302

Query: 307 FGKKPLLTPVV 317
           F  KPLLTPVV
Sbjct: 303 FLNKPLLTPVV 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212374928|pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu gi|212374938|pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blumei In Complex With Nadp+

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/310 (71%), Positives = 265/310 (85%)

Query: 8   IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIE 67
           I VLM+CP+S YLEQE++K FK+F+ W    +  F+    +SI+AVVG++ AGADAELI+
Sbjct: 24  IGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELID 83

Query: 68  SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESD 127
           +LPKLEIV++ SVGLDK+DL +C+EKG+RV NTPDVLTDDVADLAIGLILAVLRRICE D
Sbjct: 84  ALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECD 143

Query: 128 RYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY 187
           +YVR G WK G+FK+TTKF+GK VGI+G+GRIG A+A+RAEAFDC I Y SR++KPN NY
Sbjct: 144 KYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNY 203

Query: 188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS 247
            YY ++++LASN  ILVVAC LT ET HI+NR+VI+ALGPKGVLINIGRG  VDE ELVS
Sbjct: 204 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVS 263

Query: 248 ALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
           AL++GRLGGAGLDVFE EP+VPE+L GLENVVLLPHV S TVETRK MADLVVGNL+AHF
Sbjct: 264 ALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323

Query: 308 GKKPLLTPVV 317
             KPLLTPVV
Sbjct: 324 SGKPLLTPVV 333

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62816284|emb|CAD47810.2| hydroxyphenylpyruvate reductase (HPPR) [Solenostemon scutellarioides]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/310 (71%), Positives = 265/310 (85%)

Query: 8   IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIE 67
           I VLM+CP+S YLEQE++K FK+F+ W    +  F+    +SI+AVVG++ AGADAELI+
Sbjct: 4   IGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELID 63

Query: 68  SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESD 127
           +LPKLEIV++ SVGLDK+DL +C+EKG+RV NTPDVLTDDVADLAIGLILAVLRRICE D
Sbjct: 64  ALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECD 123

Query: 128 RYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY 187
           +YVR G WK G+FK+TTKF+GK VGI+G+GRIG A+A+RAEAFDC I Y SR++KPN NY
Sbjct: 124 KYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNY 183

Query: 188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS 247
            YY ++++LASN  ILVVAC LT ET HI+NR+VI+ALGPKGVLINIGRG  VDE ELVS
Sbjct: 184 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVS 243

Query: 248 ALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
           AL++GRLGGAGLDVFE EP+VPE+L GLENVVLLPHV S TVETRK MADLVVGNL+AHF
Sbjct: 244 ALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 303

Query: 308 GKKPLLTPVV 317
             KPLLTPVV
Sbjct: 304 SGKPLLTPVV 313

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549956|ref|XP_002516029.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223544934|gb|EEF46449.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/312 (70%), Positives = 270/312 (86%), Gaps = 1/312 (0%)

Query: 7   NIIVLMVCPVSN-YLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAEL 65
           +I VLM CP  N YL +E+EK F ++ L++  DK QF+N+H +SI+AVVG++  G DA+L
Sbjct: 3   SIGVLMTCPPMNPYLVEELEKRFTLYNLYNIPDKTQFLNSHSNSIRAVVGNSGYGIDADL 62

Query: 66  IESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE 125
           I+ LP LEIV++ SVGLDK+DLA+CKEK IRV NTPDVLTDDVADLAIGL+LAV+RR+CE
Sbjct: 63  IDQLPNLEIVSSHSVGLDKVDLAKCKEKRIRVTNTPDVLTDDVADLAIGLMLAVMRRLCE 122

Query: 126 SDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL 185
           SD+Y+RSG+WKKG++K+TTKFTGKSVGI+G+GRIG AIAKRAEAF C I Y +RTEK  +
Sbjct: 123 SDQYLRSGKWKKGDYKLTTKFTGKSVGIIGLGRIGMAIAKRAEAFSCPISYYARTEKTVV 182

Query: 186 NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
           NYKYY +++++A +CQILVV+C+LTEET+HIVNR+VI+ALGPKG+LINIGRG  VDE EL
Sbjct: 183 NYKYYQSVVEMAGDCQILVVSCALTEETRHIVNREVIDALGPKGILINIGRGSHVDEPEL 242

Query: 246 VSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
           VSALL+GRLGGAGLDVFE EP+VPE+L GLENVVLLPHV + T ETR AMA LVVGNL+A
Sbjct: 243 VSALLEGRLGGAGLDVFEDEPNVPEQLFGLENVVLLPHVGTRTFETRIAMAYLVVGNLEA 302

Query: 306 HFGKKPLLTPVV 317
           HF  KPLLTPVV
Sbjct: 303 HFSNKPLLTPVV 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|72256935|gb|AAZ67354.1| putative hydroxyphenylpyruvate reductase [Salvia miltiorrhiza]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/310 (70%), Positives = 268/310 (86%)

Query: 8   IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIE 67
           I VLM+CP+++YLEQE++K FK+F+ W    + +F+    +SI+A+VG++ +GADA++I+
Sbjct: 4   IGVLMLCPMNSYLEQELDKRFKLFRYWTQPKQREFLAQQAESIRAIVGNSNSGADADIID 63

Query: 68  SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESD 127
           SLPKLEIV++ SVGLD+IDL +CKEKGIRV NTPDVLT+DVADLAIGL+LAVLRRICE D
Sbjct: 64  SLPKLEIVSSFSVGLDRIDLLKCKEKGIRVTNTPDVLTEDVADLAIGLMLAVLRRICECD 123

Query: 128 RYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY 187
           +YVRSG WK G+FK+TTKF+GK VGI+G+GRIG A+A+RAEAFDC I Y SR++K N NY
Sbjct: 124 KYVRSGAWKLGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPINYYSRSKKANTNY 183

Query: 188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS 247
            YY ++++LASN  ILVVAC+LT ET HIVNR+V++ALGPKGVLINIGRG  VDE ELVS
Sbjct: 184 TYYGSVVELASNSDILVVACALTPETTHIVNREVMDALGPKGVLINIGRGPHVDEAELVS 243

Query: 248 ALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
           AL++GRLGGAGLDVFE EP+VPE+L GLENVVLLPHV S TVETRK MADLV+GNL+AHF
Sbjct: 244 ALVEGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKVMADLVLGNLEAHF 303

Query: 308 GKKPLLTPVV 317
             KPLLTPVV
Sbjct: 304 SSKPLLTPVV 313

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2017824	313	AT1G79870 [Arabidopsis thalian	0.981	0.993	0.659	1.9e-106
TAIR|locus:2034665	323	HPR3 "hydroxypyruvate reductas	0.996	0.978	0.440	1e-68
TAIR|locus:2043684	338	AT2G45630 [Arabidopsis thalian	0.873	0.819	0.408	1.5e-58
TIGR_CMR|SPO_2422	313	SPO_2422 "D-isomer specific 2-	0.791	0.801	0.426	1.4e-48
UNIPROTKB|Q483F8	311	CPS_2082 "Putative glyoxylate	0.788	0.803	0.395	3.1e-44
TIGR_CMR|CPS_2082	311	CPS_2082 "putative glyoxylate	0.788	0.803	0.395	3.1e-44
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.801	0.783	0.376	3.6e-41
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.757	0.731	0.384	1.1e-39
UNIPROTKB|Q5TM04	328	2-KGalARE "Glyoxylate/hydroxyp	0.794	0.768	0.385	1.4e-39
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.794	0.777	0.363	2.9e-39

TAIR|locus:2017824 AT1G79870 [Arabidopsis thaliana (taxid:3702)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 205/311 (65%), Positives = 242/311 (77%)

Query:     7 NIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQXXXXXXXXXXXXELI 66
             +I VLM+CP+S+YLE E+EK F + + W   +K   + TH++SI+            +LI
Sbjct:     3 SIGVLMMCPMSSYLENELEKRFNLLRFWTSPEKSVLLETHRNSIRAVVGNASAGADAQLI 62

Query:    67 ESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES 126
               LP LEIV++ SVGLDKIDL +CKEKGIRV NTPDVLT+DVADLAIGLILA+LRR+CE 
Sbjct:    63 SDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCEC 122

Query:   127 DRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN 186
             DRYVRSG+WK+GEF++TTKF+GKSVGI+G+GRIGTAIAKRAEAF C I Y SRT KP++ 
Sbjct:   123 DRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVA 182

Query:   187 YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV 246
             YKYYP ++DLA N  ILVVAC LTE+T+HIV+RQV++ALG KGVLINIGRG  VDE EL+
Sbjct:   183 YKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQELI 242

Query:   247 SXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306
                          DVFE EP VPEEL GLENVVLLPHV S TVETR AMADLVVGNL+AH
Sbjct:   243 KALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLEAH 302

Query:   307 FGKKPLLTPVV 317
             F  K LLTPVV
Sbjct:   303 FSGKSLLTPVV 313

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009854 "oxidative photosynthetic carbon pathway" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2034665 HPR3 "hydroxypyruvate reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 141/320 (44%), Positives = 203/320 (63%)

Query:     1 MDNNSNNIIVLMVCPVS-NYLEQEIEKSFK--VFKLWHFEDKEQFINTHKDSIQXXXXXX 57
             M  +S   +VL+  P S  ++++ + + F+  +      E    F   H  S +      
Sbjct:     1 MAESSEPPVVLLHRPPSLTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISG 60

Query:    58 XXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLIL 117
                   EL+  LP L+I+   SVG+D IDLA CK +GI + N  +  +DDVAD A+GL++
Sbjct:    61 RLPVTDELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLI 120

Query:   118 AVLRRICESDRYVRSGEWKK-GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY 176
             +VLRRI  +DRYVRSG W K G+F++ +K +GK VGI+G+G IG+ +AKR E+F C+I Y
Sbjct:   121 SVLRRIPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISY 180

Query:   177 NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236
             NSR++K +  Y+YY +++ LA N  +LV+ CSLT+ET HIVNR+V+  LG  GV+IN+GR
Sbjct:   181 NSRSQKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGR 240

Query:   237 GLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMA 296
             G L+DE E+V             DVFE+EP VP+EL GL+NVVL PH A AT  +   +A
Sbjct:   241 GKLIDEKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVA 300

Query:   297 DLVVGNLQAHFGKKPLLTPV 316
              + + NL+A F  +PLL+PV
Sbjct:   301 QIALANLKAFFSNRPLLSPV 320

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2043684 AT2G45630 [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 114/279 (40%), Positives = 174/279 (62%)

Query:    41 QFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANT 100
             +F+  H DSI             +LI  LP L +V T S G+D +DL  C+ +GI VAN 
Sbjct:    60 EFLAYHSDSISAIIAPVAAPVTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANA 119

Query:   101 PDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK-KGEFKMTTKFTGKSVGILGMGRI 159
                 ++DVAD A+GL++ V RRI  ++R+V+   W  KG++ + +K   K +GI+G+G I
Sbjct:   120 GSSFSEDVADTAVGLLIDVFRRISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSI 179

Query:   160 GTAIAKRAEAFDCIIGYNSRTEKP-NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218
             G+ +A R +AF C I Y+SR  KP ++ Y YY ++ ++A+N   L++ C L E+T  ++N
Sbjct:   180 GSKVATRLDAFGCQISYSSRNRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLIN 239

Query:   219 RQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENV 278
             + V++ALG +GV++N+ RG ++DE E+V             DVFE EP+VP+EL  L+NV
Sbjct:   240 KDVLSALGKRGVIVNVARGAIIDEEEMVRCLREGEIGGAGLDVFEDEPNVPKELFELDNV 299

Query:   279 VLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317
             V  PH A  T+E  + +  +VVGN++A F  KPLLTPV+
Sbjct:   300 VFSPHSAFMTLEGLEELGKVVVGNIEAFFSNKPLLTPVL 338

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TIGR_CMR|SPO_2422 SPO_2422 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 107/251 (42%), Positives = 145/251 (57%)

Query:    66 IESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE 125
             ++ LP L ++A   VG D ID+A    +GI V NTP VL DDVADLA+ ++L   RR+ +
Sbjct:    60 MDLLPGLGVIANFGVGYDAIDVAAATARGITVTNTPGVLNDDVADLAVTMLLMQCRRMEQ 119

Query:   126 SDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL 185
                +VR G W+   F +  K +G   G++G+GRIG  IA R  AF   I Y +R+EK   
Sbjct:   120 GGAWVREGHWETANFPLNRKASGGVAGVVGLGRIGREIADRLAAFKMDIHYFARSEKDTP 179

Query:   186 NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
              + Y+ + + LA     LVVA     ET+  ++R+VI ALGP+GV++NI RG  +DE  L
Sbjct:   180 GWTYHADPVSLAKAVDFLVVALVGGPETEKFISREVIEALGPRGVVVNISRGSTIDETAL 239

Query:   246 VSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
             +             DVF +EP +    + L NVVL PH  S TVETR AM  L  GN+ A
Sbjct:   240 LDALERGRIAGAALDVFLNEPTIDPRFLALSNVVLQPHQGSGTVETRAAMGALQRGNIAA 299

Query:   306 HFGKKPLLTPV 316
             H   KP+LTPV
Sbjct:   300 HLAGKPVLTPV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q483F8 CPS_2082 "Putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 102/258 (39%), Positives = 147/258 (56%)

Query:    66 IESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRIC 124
             I  LP+ ++++A   VG D IDLA    KGI V NTP V+T+D ADLA  LILA  R++ 
Sbjct:    54 ITQLPESIKLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAASRQLT 112

Query:   125 ESDRYVRSGEWKK-GEFKMTTKFT-GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
              +++++R+G+W          K   G  +GI+G G IG A+A+RA+AF+  I Y+    K
Sbjct:   113 ANEKFLRNGQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRK 172

Query:   183 ----PNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL 238
                  +L   Y+ NL D+ +   I+ + C L E T H++N   I  + P  +L+N GRG 
Sbjct:   173 IDAEVSLEAVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGP 232

Query:   239 LVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADL 298
             L+DE  LV             DVFEHEP++ ++L+ L NV L PH+ SAT + R AMA  
Sbjct:   233 LIDESALVGAMKKGHLFAAGLDVFEHEPEIHDQLLTLPNVTLTPHIGSATSQCRGAMAAC 292

Query:   299 VVGNLQAHFGKKPLLTPV 316
              +GN+ A    + LLT V
Sbjct:   293 AIGNILAQMEGRILLTSV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CPS_2082 CPS_2082 "putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 102/258 (39%), Positives = 147/258 (56%)

Query:    66 IESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRIC 124
             I  LP+ ++++A   VG D IDLA    KGI V NTP V+T+D ADLA  LILA  R++ 
Sbjct:    54 ITQLPESIKLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAASRQLT 112

Query:   125 ESDRYVRSGEWKK-GEFKMTTKFT-GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
              +++++R+G+W          K   G  +GI+G G IG A+A+RA+AF+  I Y+    K
Sbjct:   113 ANEKFLRNGQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRK 172

Query:   183 ----PNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL 238
                  +L   Y+ NL D+ +   I+ + C L E T H++N   I  + P  +L+N GRG 
Sbjct:   173 IDAEVSLEAVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGP 232

Query:   239 LVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADL 298
             L+DE  LV             DVFEHEP++ ++L+ L NV L PH+ SAT + R AMA  
Sbjct:   233 LIDESALVGAMKKGHLFAAGLDVFEHEPEIHDQLLTLPNVTLTPHIGSATSQCRGAMAAC 292

Query:   299 VVGNLQAHFGKKPLLTPV 316
              +GN+ A    + LLT V
Sbjct:   293 AIGNILAQMEGRILLTSV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 99/263 (37%), Positives = 149/263 (56%)

Query:    64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
             E +++  KLE+V++ SVG D  D+    E+GI + NTPDVLT+  ADL   LI++  RR+
Sbjct:    59 EQLQNAAKLEVVSSISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRV 118

Query:   124 CESDRYVRSGEWKKG--EFKMTTKFTGKSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRT 180
              E D Y ++G+W +        T   GK++GI+GMG IG AIA+R    F+  I Y+  +
Sbjct:   119 AELDAYTKAGQWTRSIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNS 178

Query:   181 EKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
              K  L  +    + +L  L +    + +   L+E+T+H++ R+ ++ + P  +LINI RG
Sbjct:   179 RKTELEQELGAQFRSLDQLLAEADFVCLVVPLSEKTKHLIGRRELSLMKPGAILINIARG 238

Query:   238 LLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297
              +VDE  L+             DV+E EP     L  L+N V LPH+ SAT ETR+AMAD
Sbjct:   239 PIVDEPALIEALQNGTIRGAGLDVYEKEPLKESPLFQLKNAVTLPHIGSATTETRQAMAD 298

Query:   298 LVVGNLQ-AHFGKKP--LLTPVV 317
                 NL+ A  G++P  L+ P V
Sbjct:   299 RAYHNLRNALLGERPQDLVNPQV 321

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 96/250 (38%), Positives = 144/250 (57%)

Query:    71 KLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYV 130
             +L ++A    G+D ID+A   ++GI V NTP VLTDD AD+A+ LILAV RR+ E  + +
Sbjct:    71 QLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMHEGVQIM 130

Query:   131 RSGE---WKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE-----K 182
              +G+   W    + M  + +GK +GI+GMGRIG A+A+RA AF   I Y++R       +
Sbjct:   131 EAGKFDGWTP-TWMMGRRLSGKRLGIIGMGRIGQAVARRARAFGMQIHYHNRKPVSSRIE 189

Query:   183 PNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDE 242
              +L   Y+ +L  + +   I+ + C  T  T H++N + +  + P+  +IN  RG ++DE
Sbjct:   190 ESLEATYWDSLDQMLARMDIVSINCPHTPATFHLINARRLGLMKPEAYIINTARGEVIDE 249

Query:   243 HELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGN 302
               L              DVFE EP V  ELIGL NV+LLPH+ SAT+E R  M + V+ N
Sbjct:   250 AALARAIRAGKIAGAGLDVFEREPAVNPELIGLPNVLLLPHMGSATIEGRTEMGEKVIIN 309

Query:   303 LQAHF-GKKP 311
             ++    G +P
Sbjct:   310 IKTFADGHRP 319

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

UNIPROTKB|Q5TM04 2-KGalARE "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 101/262 (38%), Positives = 144/262 (54%)

Query:    64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
             EL++  P+L  VA+ SVG+D  D+    ++ I ++NTPDVLT+  AD    LILA  RR+
Sbjct:    59 ELLDLAPRLRAVASVSVGVDNYDIDYLTQRRILLSNTPDVLTETTADTGFALILATARRV 118

Query:   124 CESDRYVRSGEWKK--GEFKMTTKFTGKSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRT 180
              E    VR+G+W++  G     T   GK++GI+GMGRIG A+A+R    F   + Y+S  
Sbjct:   119 VELANLVRAGQWQRNIGPAHFGTDVHGKTLGIIGMGRIGEALAQRGHFGFGMPLIYHSTR 178

Query:   181 EKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
              KP +  ++   Y +L  L      + +   LTE TQ ++  +    + P+ + INI RG
Sbjct:   179 PKPAVEQRFNAQYRSLEQLLEEADFICLTLPLTERTQGLIGAREFALMRPESIFINISRG 238

Query:   238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP-DVPEELIGLENVVLLPHVASATVETRKAMA 296
              +VDE  L+             DVFE EP D    L+ L NVV  PH+ SAT ETR+AMA
Sbjct:   239 KVVDEAALIEALQQRRIRGAGLDVFEREPLDHDSPLLQLPNVVATPHIGSATHETREAMA 298

Query:   297 DLVVGNLQAHF-GKKP--LLTP 315
                V NL A   G++P  L+ P
Sbjct:   299 RCAVDNLLAALAGQRPPNLVNP 320

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

GO:0046487 "glyoxylate metabolic process" evidence=ISS

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 95/261 (36%), Positives = 147/261 (56%)

Query:    66 IESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE 125
             +E+  +LE+V++ SVG D  DLA   E+G+ + NTPDVLT+  ADLA  L+++  RR+ E
Sbjct:    61 LENAARLEVVSSISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARRVAE 120

Query:   126 SDRYVRSGEWKK--GEFKMTTKFTGKSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRTEK 182
              D + ++G+W+   G         GK++GI+GMG IG AIA+R    F   I Y+  + K
Sbjct:   121 LDAWTKAGQWQASVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGNSRK 180

Query:   183 PNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
               L  +    + +L  L +    + +   L+E+T+H+++ + +  + P  +L+NI RG +
Sbjct:   181 AALEQELGAQFRSLEQLLAEADFVCLVVPLSEKTKHLISHRELALMKPSAILVNISRGPV 240

Query:   240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLV 299
             VDE  L+             DV+E EP     L  L+N V LPH+ SAT ETR AMA   
Sbjct:   241 VDEPALIEALQKGQIRGAGLDVYEKEPLAESPLFQLKNAVTLPHIGSATHETRDAMAARA 300

Query:   300 VGNLQ-AHFGKKP--LLTPVV 317
             + NL+ A  G++P  L+ P V
Sbjct:   301 MSNLRSALLGERPQDLVNPQV 321

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CA90	HPR2_ARATH	1, ., 1, ., 1, ., 8, 1	0.7202	0.9810	0.9936	yes	no
A6TFG7	GHRB_KLEP7	1, ., 1, ., 1, ., 8, 1	0.3672	0.9148	0.8978	yes	no
C6DJ88	GHRB_PECCP	1, ., 1, ., 1, ., 8, 1	0.3696	0.9211	0.9125	yes	no
A8ARD9	GHRB_CITK8	1, ., 1, ., 1, ., 8, 1	0.3686	0.8895	0.8703	yes	no
B1L765	GYAR_KORCO	1, ., 1, ., 1, ., 2, 6	0.4251	0.8832	0.8433	yes	no
B2VCD1	GHRB_ERWT9	1, ., 1, ., 1, ., 8, 1	0.4	0.8359	0.8255	yes	no
Q6DB24	GHRB_ERWCT	1, ., 1, ., 1, ., 8, 1	0.3696	0.9211	0.9125	yes	no
B7LTG7	GHRB_ESCF3	1, ., 1, ., 1, ., 8, 1	0.3692	0.9242	0.9043	yes	no
A4W577	GHRB_ENT38	1, ., 1, ., 1, ., 8, 1	0.3498	0.9211	0.9012	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766
4th Layer	1.1.1.81	LOW CONFIDENCE prediction!
4th Layer	1.1.1.79	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_III0012 hypothetical protein (314 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-172
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-110
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-102
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	5e-91
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	5e-81
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	5e-80
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	9e-80
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	5e-76
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	1e-74
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	5e-74
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	7e-72
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	1e-69
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	1e-68
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	1e-67
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-63
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	6e-63
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-61
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	3e-60
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	4e-59
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	3e-58
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	2e-57
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	4e-54
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	1e-53
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	2e-53
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	3e-53
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	3e-51
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-50
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	2e-47
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	6e-45
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	8e-45
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	2e-44
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	5e-44
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	5e-42
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	6e-42
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	1e-41
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	9e-41
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	2e-39
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	2e-38
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	1e-36
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	2e-36
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-35
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	4e-35
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	5e-35
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	9e-35
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	8e-34
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	2e-33
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	9e-32
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	1e-30
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	2e-28
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	4e-28
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	1e-27
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	9e-24
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	2e-23
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	2e-23
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	4e-22
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	8e-22
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	1e-21
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	1e-14
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	1e-11
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	2e-10
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	1e-05

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  479 bits (1235), Expect = e-172
 Identities = 161/299 (53%), Positives = 212/299 (70%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
           VL + P+   L  E+E  F V +LW   D    +  H   I+AVV +   G  A LI +L
Sbjct: 3   VLQLGPLPPELLAELEARFTVHRLWEAADPAALLAEHGGRIRAVVTNGETGLSAALIAAL 62

Query: 70  PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
           P LE++A+  VG D IDL   + +GIRV NTP VLTDDVADLA+GL+LAVLRRI  +DR+
Sbjct: 63  PALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRF 122

Query: 130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKY 189
           VR+G W KG F +T K +GK VGI+G+GRIG AIA+R EAF   I Y+ R  KP++ Y+Y
Sbjct: 123 VRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPKPDVPYRY 182

Query: 190 YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL 249
           Y +L++LA+   +LVVAC     T+H+VN +V+ ALGP GVL+N+ RG +VDE  L++AL
Sbjct: 183 YASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAAL 242

Query: 250 LQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFG 308
            +GR+ GAGLDVFE+EP+VP  L+ L+NVVL PH+ASATVETR+AM DLV+ NL+A F 
Sbjct: 243 QEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETRRAMGDLVLANLEAFFA 301

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  322 bits (827), Expect = e-110
 Identities = 123/276 (44%), Positives = 171/276 (61%), Gaps = 7/276 (2%)

Query: 38  DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
            +E+ +   K     ++ +     DAEL+++ P L+++A  SVG D ID+   K +GI V
Sbjct: 33  PREELLEAAKG-ADGLLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPV 91

Query: 98  ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKK-GEFKMT-TKFTGKSVGILG 155
            NTPDVLTD  ADLA  L+LA  RR+ E DR+VR+GEWK      +  T   GK++GI+G
Sbjct: 92  TNTPDVLTDATADLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVG 151

Query: 156 MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK---YYPNLIDLASNCQILVVACSLTEE 212
           MGRIG A+A+RA+ F   I Y++R+ KP    +    Y +L +L +    + + C LT E
Sbjct: 152 MGRIGQAVARRAKGFGMKILYHNRSRKPEAEEELGARYVSLDELLAESDFVSLHCPLTPE 211

Query: 213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-E 271
           T+H++N + +  + P  +LIN  RG +VDE  LV AL  G++ GAGLDVFE EP   +  
Sbjct: 212 TRHLINAERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHP 271

Query: 272 LIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
           L+ L NVVLLPH+ SATVETR AMA+L   NL A  
Sbjct: 272 LLTLPNVVLLPHIGSATVETRTAMAELAADNLLAVL 307

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  301 bits (774), Expect = e-102
 Identities = 121/320 (37%), Positives = 178/320 (55%), Gaps = 12/320 (3%)

Query: 8   IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIE 67
           I+VL    +   + + +++ F+V +       +  +        AV+       DAE++E
Sbjct: 3   IVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLE 62

Query: 68  SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESD 127
            LP L+++AT S G D +DL   KE+GI V N P   T+ VA+ A+ LILA+ RRI E D
Sbjct: 63  KLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGD 122

Query: 128 RYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP- 183
           R VR G W      +  +     GK++GI+G+GRIG A+A+R + F   + Y  R+  P 
Sbjct: 123 RRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE 182

Query: 184 ---NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
               L  +Y   L +L +   I+ + C LT ET+H++N + +  + P  +L+N  RG LV
Sbjct: 183 AEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLV 241

Query: 241 DEHELVSALLQGRLGGAGLDVFEHEPD-VPEELIGLEN---VVLLPHVASATVETRKAMA 296
           DE  L+ AL  G++ GAGLDVFE+EP      L+ L+N   VVL PH+ASAT E RKAMA
Sbjct: 242 DEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMA 301

Query: 297 DLVVGNLQAHFGKKPLLTPV 316
           +L + NL+A F        V
Sbjct: 302 ELALENLEAFFDGGVPPNEV 321

Length = 324

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  272 bits (699), Expect = 5e-91
 Identities = 100/257 (38%), Positives = 148/257 (57%), Gaps = 6/257 (2%)

Query: 52  AVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADL 111
           A++ S+     AE++   PKL+ +     G+D IDL   K++GI V N P    + VA+ 
Sbjct: 44  ALIVSSTTPVTAEVLAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEH 103

Query: 112 AIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD 171
           A+GL+LA+LRR+  +D  VR G           +  GK+VGI+G+GRIG  +AKR +AF 
Sbjct: 104 ALGLLLALLRRLPRADAAVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFG 163

Query: 172 C-IIGYNSRTEKPN---LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
             ++ Y  RT KP           +L +L +   ++V+   LT ET+H++N + +  + P
Sbjct: 164 MKVLYY-DRTRKPEPEEDLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKP 222

Query: 228 KGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE-LIGLENVVLLPHVAS 286
             VL+N  RG LVDE  L+ AL  G++ GA LDVFE EP   +  L+ L NV+L PH+A 
Sbjct: 223 GAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAG 282

Query: 287 ATVETRKAMADLVVGNL 303
            T E R+ MA++ V NL
Sbjct: 283 YTEEARERMAEIAVENL 299

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  248 bits (635), Expect = 5e-81
 Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 16/298 (5%)

Query: 23  EIEKSFKVFKLWHFEDKEQFIN---THK-DSIQAVV---GSAAAGA--DAELIESLPK-L 72
           E+    +V        +E+FI      K     A+    GSA      D ELI  LP  L
Sbjct: 19  ELSSIAEVIYP-TSGTREEFIEALKEGKYGDFVAIYRTFGSAGETGPFDEELISPLPPSL 77

Query: 73  EIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRS 132
           +I+A    G D+ID+    ++GI+V+NTP  + +  AD A+ LIL  LR    ++R  R+
Sbjct: 78  KIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSARA 137

Query: 133 GEWKKG-EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NY 187
           G+W+   +  +     GK++GILG+G IG AIA++A AF   I Y++R+  P        
Sbjct: 138 GKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKALA 197

Query: 188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS 247
            YY +L +L +   ++ + C LT  T+H++N++    +    +++N  RG ++DE  LV 
Sbjct: 198 TYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVD 257

Query: 248 ALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
           AL  G++  AGLDVFE+EP+V   L+ + NV LLPH+ + TVET++ M +LV+ N++A
Sbjct: 258 ALESGKVASAGLDVFENEPEVNPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIEA 315

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  245 bits (628), Expect = 5e-80
 Identities = 109/259 (42%), Positives = 145/259 (55%), Gaps = 9/259 (3%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           D E+I++   L+I+A    G D ID+   KEKGI V NTP V T+  A+L  GLILA+ R
Sbjct: 56  DKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALAR 115

Query: 122 RICESDRYVRSGEWKKGE--FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSR 179
           RI E DR +R G +      F +  +  GK++GI+GMGRIG A+A+RA+AF   I Y +R
Sbjct: 116 RIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNR 175

Query: 180 TEKP-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI 234
                     L   Y   L +L      + +    T ET H+++      + P   LIN 
Sbjct: 176 HRLSEETEKELGATYVD-LDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINA 234

Query: 235 GRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKA 294
            RG LVDE  LV AL  G + GA LDVFE EP+V  EL  L+NV+L PH+ +ATVE R A
Sbjct: 235 ARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATVEARDA 294

Query: 295 MADLVVGNLQAHF-GKKPL 312
           MA     N+ +   GK+P 
Sbjct: 295 MAKEAADNIISFLEGKRPK 313

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  245 bits (627), Expect = 9e-80
 Identities = 124/295 (42%), Positives = 172/295 (58%), Gaps = 16/295 (5%)

Query: 24  IEKSFKVFKLWHFED---KEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSV 80
           +E+ F+V ++W  E    +E  +   +D + A+V   +   D E+ E+ P+L IVA  +V
Sbjct: 19  LEEHFEV-EVWEDEREIPREVLLEKVRD-VDALVTMLSERIDCEVFEAAPRLRIVANYAV 76

Query: 81  GLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF 140
           G D ID+     +GI V NTP VLT+  AD A  L+LA  RR+ E+D +VRSGEWK+   
Sbjct: 77  GYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGV 136

Query: 141 KMTTKF------TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYY 190
                        GK++GI+G GRIG A+A+RA+ F   I Y SRT KP     L  +Y 
Sbjct: 137 AWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYR 196

Query: 191 PNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL 250
           P L +L      + +   LT+ET H++N + +  + P  +L+N  RG +VD   LV AL 
Sbjct: 197 P-LEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255

Query: 251 QGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
           +G + GAGLDVFE EP   EEL  L+NVVL PH+ SAT E R+ MA+LV  NL A
Sbjct: 256 EGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIA 310

Length = 333

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  235 bits (602), Expect = 5e-76
 Identities = 102/313 (32%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 8   IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIE 67
           I VL+  P++    +E+  ++ V      +  E+ +        A++ S       E++ 
Sbjct: 4   IKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIVSVT-PVTEEVLA 62

Query: 68  SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESD 127
           + P L+ +     G+D IDL    ++GI V N P      VA+L + L+LA+ RRI ++D
Sbjct: 63  AAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDAD 122

Query: 128 RYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SRTEKP 183
              R GEW +  F+ T    GK+VGI+G+GRIG A+AKR +AF   +IGY+    R    
Sbjct: 123 ASQRRGEWDRKAFRGTELA-GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAG 181

Query: 184 NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEH 243
                   +L +L +   IL +   LT ET+ ++N + +  + P  +LIN  RG +VDE 
Sbjct: 182 VDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDED 241

Query: 244 ELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKAMADLVVGN 302
            L++AL  G++ GA LDVFE EP   +  L  L NV+L PH+  +T E ++ +A++V  N
Sbjct: 242 ALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAEN 301

Query: 303 LQAHFGKKPLLTP 315
           +  +    P++  
Sbjct: 302 IVRYLAGGPVVNN 314

Length = 324

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  231 bits (591), Expect = 1e-74
 Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 9/247 (3%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
             E++ + P+L++++   VG D IDL   K++GI V NTP   ++ VA+L IGL+LA+ R
Sbjct: 59  TEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALAR 118

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN--- 177
           +I ++DR VR+G W +    + T+  GK++GI+G+GRIG A+A+R   F   ++ Y+   
Sbjct: 119 QIPQADREVRAGGWDRP---VGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYP 175

Query: 178 SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
                     ++   L +L      + +   LT ET+H++N   +  + P  +LIN  RG
Sbjct: 176 DEEFAKEHGVEFVS-LEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARG 234

Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEP-DVPEELIGLENVVLLPHVASATVETRKAMA 296
            LVDE  L  AL  GR+ GA LDVFE EP      L+ L NV+L PH+ ++T E    M 
Sbjct: 235 GLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRMG 294

Query: 297 DLVVGNL 303
            +   N+
Sbjct: 295 TMAAQNV 301

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  229 bits (587), Expect = 5e-74
 Identities = 99/256 (38%), Positives = 150/256 (58%), Gaps = 5/256 (1%)

Query: 53  VVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLA 112
           +V       DAEL+ + P+L ++    VGLD +DL     +GI VAN P    + VA+ A
Sbjct: 47  LVPGMRKVIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHA 106

Query: 113 IGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC 172
           + L+LA+LRR+ E+DR +R+G W + E + + + +GK+VGI+G+G IG A+A+R   F  
Sbjct: 107 VMLMLALLRRLPEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV 166

Query: 173 IIGYNSRTEKPNLNYKYYPN----LIDLASNCQILVVACSLTEETQHIVNRQVINALGPK 228
            + Y  R   P    K        L +L +   ++ +   LT ET+H++  + + A+ P 
Sbjct: 167 EVIYYDRFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPG 226

Query: 229 GVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASA 287
            +LIN  RG LVDE  L++AL  G L GAGLDVF  EP  P+  L+ L+NV+L PH+A  
Sbjct: 227 AILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGV 286

Query: 288 TVETRKAMADLVVGNL 303
           T E+ + MA +V  N+
Sbjct: 287 TDESYQRMAAIVAENI 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  224 bits (573), Expect = 7e-72
 Identities = 96/270 (35%), Positives = 144/270 (53%), Gaps = 15/270 (5%)

Query: 57  AAAGADA----------ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTD 106
           AAA ADA          E+IE+LP+L+++    VG+D +D+A   E+GI V N PD  T+
Sbjct: 41  AAADADALLVQYAPVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTE 100

Query: 107 DVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKR 166
           +VAD A+ LILA+ R++   DR VR+G W         +  G ++G++G GRIG A+AKR
Sbjct: 101 EVADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGRIGRAVAKR 160

Query: 167 AEAFDC-IIGYNSRTEKPNLNYKYYP--NLIDLASNCQILVVACSLTEETQHIVNRQVIN 223
           A+AF   +I Y+                +L +L +   ++ + C LT ET+H+++ + + 
Sbjct: 161 AKAFGFRVIAYDPYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALA 220

Query: 224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP-DVPEELIGLENVVLLP 282
            + P   L+N  RG LVDE  L  AL  GR+ GA LDV E EP      L+   NV+L P
Sbjct: 221 LMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTP 280

Query: 283 HVASATVETRKAMADLVVGNLQAHF-GKKP 311
           H A  + E+   +       +     G+ P
Sbjct: 281 HAAWYSEESLAELRRKAAEEVVRVLRGEPP 310

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  218 bits (558), Expect = 1e-69
 Identities = 95/314 (30%), Positives = 155/314 (49%), Gaps = 10/314 (3%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
           VL+  P+     + +++  +V ++      E+ +   KD+  A++  +     AE++E+ 
Sbjct: 1   VLITDPLRPEELELLKEGGEV-EVHDELLTEELLEAAKDA-DALIVRSTTPVTAEVLEAA 58

Query: 70  PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
           P L+++A   VG+D IDL    E+GI V N P   T+ VA+L +GLILA+ RRI E+D  
Sbjct: 59  PGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADAS 118

Query: 130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYK 188
           VR+G+WKKG   +  +  GK++G++G G IG   A  A+A    ++ Y+           
Sbjct: 119 VRAGDWKKGGP-IGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEG 177

Query: 189 YYP------NLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDE 242
                     L+DL  +  ++ +A   T +T HI+  +    L     + N   G +++E
Sbjct: 178 GVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEE 237

Query: 243 HELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGN 302
             L + L +G    A   V E  P V   L+ L NV+L PH+A AT E ++ MA+    N
Sbjct: 238 AALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAEN 297

Query: 303 LQAHFGKKPLLTPV 316
           L A          V
Sbjct: 298 LLAFLKGGTPPNAV 311

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  215 bits (551), Expect = 1e-68
 Identities = 88/248 (35%), Positives = 143/248 (57%), Gaps = 5/248 (2%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
            AE+IE+ P+L+++    VG+D ID+     +GI V N P   T  VA+  I L+LA+ R
Sbjct: 53  TAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALAR 112

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNS-- 178
            I ++D  +R+G+W + +F M  +  GK++GI+G+GRIG  +A+RA AF   ++ Y+   
Sbjct: 113 NIPQADASLRAGKWDRKKF-MGVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYI 171

Query: 179 RTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL 238
             E+         +L +L +    + +   LT ET+ ++N + +  + P  +LIN  RG 
Sbjct: 172 SAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGG 231

Query: 239 LVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKAMAD 297
           +VDE  L  AL  G++ GA LDVFE EP   +  L+GL NV+L PH+ ++T E ++ +A 
Sbjct: 232 IVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAV 291

Query: 298 LVVGNLQA 305
                + A
Sbjct: 292 DAAEQVLA 299

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  212 bits (543), Expect = 1e-67
 Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 9/303 (2%)

Query: 10  VLMVCPVSNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIES 68
           +L+   +     +++E++ F+V        KE+ +   KD    ++  +      E+I++
Sbjct: 3   ILITDGIDEIAIEKLEEAGFEVDYE-PLIAKEELLEKIKD-YDVLIVRSRTKVTKEVIDA 60

Query: 69  LPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDR 128
              L+I+A   VGLD ID+   K+KGI+V NTP   ++ VA+L IGL+L++ R I  ++R
Sbjct: 61  AKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANR 120

Query: 129 YVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SRTEKPN 184
            ++ G+W K ++    +  GK++GI+G GRIG  +AK A A    +I Y+      +   
Sbjct: 121 EMKLGKWNKKKY-KGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVE 179

Query: 185 LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHE 244
           L  K    L +L  N   + +   LT ET+H++N++ +  +    ++IN  RG ++DE  
Sbjct: 180 LGVKTVS-LEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEA 238

Query: 245 LVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQ 304
           L+ AL  G+L GA LDVFE+EP    +L+ L NV L PH+ ++T E ++ + + +   + 
Sbjct: 239 LLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTKEAQERIGEELANKII 298

Query: 305 AHF 307
              
Sbjct: 299 EFL 301

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  202 bits (517), Expect = 2e-63
 Identities = 90/253 (35%), Positives = 140/253 (55%), Gaps = 12/253 (4%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           DAE++  LP L+++   + G + +DLA  KE+GI V N P   TD VA     L+LA+ R
Sbjct: 56  DAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALAR 115

Query: 122 RICESDRYVRSGEWKKGEF-----KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY 176
            +   +  V++GEW+K            +  GK++GI+G G IG A+A+ A AF   + +
Sbjct: 116 LVAYHNDVVKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARIARAFGMKVLF 175

Query: 177 NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236
             R   P L   Y   L +L +   ++ + C LT ET++++N + +  + P  +LIN  R
Sbjct: 176 AERKGAPPLREGYVS-LDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTAR 234

Query: 237 GLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE----LIGLENVVLLPHVASATVETR 292
           G LVDE  L  AL  G++ GAGLDV   EP  P      L    N+++ PH+A A+ E R
Sbjct: 235 GGLVDEQALADALNSGKIAGAGLDVLSQEP--PRADNPLLKAAPNLIITPHIAWASREAR 292

Query: 293 KAMADLVVGNLQA 305
           + + D++V N++A
Sbjct: 293 QRLMDILVDNIKA 305

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  201 bits (514), Expect = 6e-63
 Identities = 110/297 (37%), Positives = 154/297 (51%), Gaps = 15/297 (5%)

Query: 20  LEQEIEKSFKV--FKLWHFEDKEQFINTHKDSIQAVVGSAAAG--ADAELIESLPKLEIV 75
           L Q +E+ F V        E  EQ    H  +     G   +G   DA L+E +PKL   
Sbjct: 15  LLQRLEEHFTVTQVANLSPETVEQ----HAAAFAEAEGLLGSGEKVDAALLEKMPKLRAA 70

Query: 76  ATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEW 135
           +T SVG D  D+     + I + +TP VLT+ VAD  + L+L+  RR+ E    V++GEW
Sbjct: 71  STISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEW 130

Query: 136 KK--GEFKMTTKFTGKSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRTEKPNLNYKY--- 189
               G     T    K++GI+GMGRIG A+A+RA   F+  I YN+R        ++   
Sbjct: 131 TASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNAR 190

Query: 190 YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL 249
           Y +L  L      + +   LT+ET H+   +    +    + IN GRG +VDE+ L++AL
Sbjct: 191 YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAAL 250

Query: 250 LQGRLGGAGLDVFEHEP-DVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
            +G +  AGLDVFE EP  V   L+ L NVV +PH+ SAT ETR  MA   V NL  
Sbjct: 251 QKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLID 307

Length = 323

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  192 bits (491), Expect = 2e-61
 Identities = 72/176 (40%), Positives = 110/176 (62%), Gaps = 4/176 (2%)

Query: 113 IGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC 172
           + L+LA+ RRI E+DR VR+G W+     +  + +GK+VGI+G+GRIG A+A+R +AF  
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDAL-LGRELSGKTVGIIGLGRIGRAVARRLKAFGM 59

Query: 173 -IIGYN-SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV 230
            +I Y+     +       Y +L +L +   ++ +   LT ET+H++N + +  + P  +
Sbjct: 60  KVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAI 119

Query: 231 LINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVA 285
           LIN  RG LVDE  L++AL  GR+ GA LDVFE EP  P+  L+ L NV+L PH+A
Sbjct: 120 LINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  194 bits (496), Expect = 3e-60
 Identities = 86/302 (28%), Positives = 147/302 (48%), Gaps = 19/302 (6%)

Query: 21  EQEIEKSFKVFKLWHFEDKEQFINTH--KDSIQ----AVVGSAAAGADAELIESLPKLEI 74
           ++  E   +V  +      E         ++++     +   A      ++IE+ PKL++
Sbjct: 13  DEPFEDLQEVILVVEKSGPEAVEPEEELLEALKDADILITHFAPVTK--KVIEAAPKLKL 70

Query: 75  VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGE 134
           +  C  G + +D+    E+GI V NTP    + VA+  +GL+LA  R I  +   ++ GE
Sbjct: 71  IGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGE 130

Query: 135 WKKGEF---KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SRTEKPNLNY 187
           W+K  +       +  GK+VGI+G G IG  +AKR +AF   ++ Y+      +      
Sbjct: 131 WRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEADGV 190

Query: 188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS 247
           K    L +L     ++ +   LT ET+ ++  +    + P    IN  R  LVDE  L+ 
Sbjct: 191 KKVS-LEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIE 249

Query: 248 ALLQGRLGGAGLDVFEHEPDVPE--ELIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
           AL +G++GGA LDVF  EP +P    L+ L+NV L PH+A AT +  +   +++   L+ 
Sbjct: 250 ALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAGATRDVAERSPEIIAEELKR 308

Query: 306 HF 307
           + 
Sbjct: 309 YL 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  191 bits (488), Expect = 4e-59
 Identities = 89/257 (34%), Positives = 131/257 (50%), Gaps = 16/257 (6%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           DA+ +++ P+L+I+A    G D  D+  C  +GI V   PD+LT+  A+L IGL++ + R
Sbjct: 57  DADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 122 RICESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT 180
            I   DR+VRSG++         T   GK+VGILGMG +G AIA+R   F   + Y    
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPH 176

Query: 181 EKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
                    LN +    L +L  +   LV+A  LT +T H++N + +  + P  +L+N  
Sbjct: 177 PLDQAEEQALNLRRVE-LDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPC 235

Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEP--------DVPEELIGLE-NVVLLPHVAS 286
           RG +VDE  +  AL  G LGG   DVFE E          +P+EL+      V  PH+ S
Sbjct: 236 RGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGS 295

Query: 287 ATVETRKAMADLVVGNL 303
           A  E R  +      N+
Sbjct: 296 AVDEVRLEIELEAALNI 312

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  189 bits (482), Expect = 3e-58
 Identities = 92/258 (35%), Positives = 145/258 (56%), Gaps = 16/258 (6%)

Query: 63  AELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
            E+IE+   L++++    G+D +DL  CKE+GI V+N     T+ VA+L IGL + +LR 
Sbjct: 61  GEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRN 120

Query: 123 ICESDRYVRSGEWKKG----EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN 177
           I   D  VR+G  K G    E        GK+VGI+G G IG  +A+  +AF C ++ Y+
Sbjct: 121 IVPCDAAVRAGGTKAGLIGRELA------GKTVGIVGTGAIGLRVARLFKAFGCKVLAYS 174

Query: 178 SRTEKPNLNYKY--YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
            R+EK         Y +L +L +   I+ +   L +ET+ ++ ++ +  +    +LIN  
Sbjct: 175 -RSEKEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTA 233

Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRK 293
           RG +VD   L  AL +G++ GAG+DVF+ EP +P +  L+   N +L PHVA AT E  +
Sbjct: 234 RGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEAME 293

Query: 294 AMADLVVGNLQAHFGKKP 311
             A++V  N++A    KP
Sbjct: 294 KRAEIVFDNIEAWLAGKP 311

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  187 bits (477), Expect = 2e-57
 Identities = 88/314 (28%), Positives = 154/314 (49%), Gaps = 16/314 (5%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
           +L++ P+ +   + +  +            E+      D    ++G+       EL+ + 
Sbjct: 3   ILVLSPLDDEHLERLRAAAPGA-ELRVVTAEELTEELAD-ADVLLGN---PPLPELLPAA 57

Query: 70  PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
           P+L  + + S G+D +      E+ + + N   +    +A+  +G +LA  R++    R 
Sbjct: 58  PRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARN 117

Query: 130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNY- 187
                W++       +  GK+V I+G+G IG  IA+RA+AF   +IG   R+ +P     
Sbjct: 118 QAERRWQRRG--PVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVR-RSGRPAPPVV 174

Query: 188 -KYYP--NLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHE 244
            + Y    L +L      +V A  LT ET+ + N +   A+ P  VLIN+GRG +VDE  
Sbjct: 175 DEVYTPDELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDA 234

Query: 245 LVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRKAMADLVVGN 302
           L+ AL  GR+ GA LDVFE EP +P +  L  L NV++ PH++  +    + + ++ + N
Sbjct: 235 LIEALESGRIAGAALDVFEEEP-LPADSPLWDLPNVIITPHISGDSPSYPERVVEIFLEN 293

Query: 303 LQAHFGKKPLLTPV 316
           L+ +   +PLL  V
Sbjct: 294 LRRYLAGEPLLNVV 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  184 bits (469), Expect = 4e-54
 Identities = 81/236 (34%), Positives = 134/236 (56%), Gaps = 12/236 (5%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
            AE++E+   L+++    VG+D +D+     +GI V N P   T   A+  I L+LA+ R
Sbjct: 55  TAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALAR 114

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN--- 177
            I ++   +++G+W++ +F M  +  GK++GI+G+GRIG+ +AKRA+AF   +I Y+   
Sbjct: 115 NIPQAHASLKAGKWERKKF-MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI 173

Query: 178 --SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV-LINI 234
              R  +  L  +   +L +L +    + +   LT ET+ ++  + + A    GV +IN 
Sbjct: 174 SPERAAQ--LGVELV-SLDELLARADFITLHTPLTPETRGLIGAEEL-AKMKPGVRIINC 229

Query: 235 GRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVE 290
            RG ++DE  L  AL  G++ GA LDVFE EP     L  L NVV+ PH+ ++T E
Sbjct: 230 ARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAE 285

Length = 526

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  177 bits (451), Expect = 1e-53
 Identities = 90/306 (29%), Positives = 148/306 (48%), Gaps = 16/306 (5%)

Query: 20  LEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCS 79
           L +E E + +       E  ++      +    +VG        E + +L +L+++   S
Sbjct: 11  LREEFEAALEGLYAEVPELPDEAAEEALEDADVLVGGR--LTKEEALAALKRLKLIQVPS 68

Query: 80  VGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKK-- 137
            G+D + L R  E G+ VAN     +  VA+ A+ LILA+ +RI E D  +R G W    
Sbjct: 69  AGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIWHGRA 126

Query: 138 GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKYYP--NLI 194
           GE   + +  GK+VGILG G IG  IA+  +AF   +IG +   ++           +L 
Sbjct: 127 GEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKEDEGADFVGTLSDLD 186

Query: 195 DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRL 254
           +      ++VVA  LT++T+ ++    + A+ P  +L+N+GRG +VDE  L  AL +  +
Sbjct: 187 EALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPI 246

Query: 255 GGAGLDVFEHEPDVPEE-------LIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
            GA +DV+   P   +           L NV++ PH A  T ET +   D    N++ + 
Sbjct: 247 AGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEETFRRRIDEAAENIRRYL 306

Query: 308 GKKPLL 313
             +PLL
Sbjct: 307 RGEPLL 312

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  176 bits (450), Expect = 2e-53
 Identities = 84/251 (33%), Positives = 132/251 (52%), Gaps = 9/251 (3%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
            A L+E LP L+++ T  +    IDLA  KE+GI V  T        A+L   LILA+ R
Sbjct: 60  PAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALAR 118

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR- 179
            + E D  +R+G W+     + T   GK++GI+G+GRIG  +A+  +AF   +I ++S  
Sbjct: 119 NLPEEDAALRAGGWQTT---LGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNL 175

Query: 180 -TEK-PNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
             E+      +   +  +L +   ++ +   L++ T+ +V  + +  + P  +L+N  RG
Sbjct: 176 TAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRG 235

Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEP-DVPEELIGLENVVLLPHVASATVETRKAMA 296
            LVDE  L++AL  GR+ GA LDVF+ EP      L GL NV+L PH+   T E  +   
Sbjct: 236 PLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFY 295

Query: 297 DLVVGNLQAHF 307
              V N+ A  
Sbjct: 296 GQAVENIAAWL 306

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  176 bits (449), Expect = 3e-53
 Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 19/259 (7%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           DAEL++  P L+ ++  + G D IDL   KE GI V N P+   + VA+  I LILA+LR
Sbjct: 58  DAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLR 117

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN--S 178
                D   ++ + +        +   ++VG++G G+IG A+A+RA+ F   +I Y+   
Sbjct: 118 NRKYIDERDKNQDLQDAGVIGR-ELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFR 176

Query: 179 RTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL 238
             E  +   KY  +L +L  N  I+ +   LT E  H++N +    +    ++IN  RG 
Sbjct: 177 NPELEDKGVKYV-SLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGS 235

Query: 239 LVDEHELVSALLQGRLGGAGLDVFEHE-PDVPE-------------ELIGLENVVLLPHV 284
           LVD   L+ AL  G++ GAGLDV E E PD+ +              L    NV++ PH 
Sbjct: 236 LVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITPHT 295

Query: 285 ASATVETRKAMADLVVGNL 303
           A  T +  K M ++   N+
Sbjct: 296 AFYTDDALKNMVEISCENI 314

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  171 bits (435), Expect = 3e-51
 Identities = 90/270 (33%), Positives = 143/270 (52%), Gaps = 11/270 (4%)

Query: 51  QAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPD-VLTDDVA 109
             ++ S     D E  E    L+++A   +G D +DL    E G+ V   P  V  D VA
Sbjct: 49  DIIIASVTPNFDKEFFEYNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVA 108

Query: 110 DLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA-E 168
           + A+ LIL VLR+I ++   V+ G+W +    +  + +GK+VGI+G G IG+ +A+   E
Sbjct: 109 EHAVALILTVLRKINQASEAVKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKE 168

Query: 169 AFDC-IIGY--NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225
            F+  ++ Y      E          +L +L +   I+ +   LTEET H++N +  + +
Sbjct: 169 GFNAKVLAYDPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKM 228

Query: 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP---DVPEELIGLENVVLLP 282
               +L+N  RG L+DE  L+ AL  G++ GAGLDV E EP   D P  L+  ENVV+ P
Sbjct: 229 KKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHP--LLHYENVVITP 286

Query: 283 HVASATVETRKAMADLVVGNLQAHF-GKKP 311
           H+ + T E+   M + VV +++    GK+P
Sbjct: 287 HIGAYTYESLYGMGEKVVDDIEDFLAGKEP 316

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  174 bits (444), Expect = 2e-50
 Identities = 83/255 (32%), Positives = 142/255 (55%), Gaps = 9/255 (3%)

Query: 52  AVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADL 111
           A++  +A     E+I + PKL+++    VG+D ID+     +GI V N P   T   A+ 
Sbjct: 43  ALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEH 102

Query: 112 AIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD 171
           A+ ++LA  R I ++D  ++ GEW +  F M T+  GK++G++G+GRIG+ +AKRA+AF 
Sbjct: 103 ALAMLLAAARNIPQADASLKEGEWDRKAF-MGTELYGKTLGVIGLGRIGSIVAKRAKAFG 161

Query: 172 C-IIGYN-----SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225
             ++ Y+      R E+  L  +   +L +L +    + V   LT ET+ ++  + +  +
Sbjct: 162 MKVLAYDPYISPERAEQ--LGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKM 219

Query: 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVA 285
               +++N  RG ++DE  L  AL +G +  A LDVFE EP     L  L+NV+  PH+ 
Sbjct: 220 KKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLG 279

Query: 286 SATVETRKAMADLVV 300
           ++T E ++ +A  V 
Sbjct: 280 ASTREAQENVATQVA 294

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  161 bits (410), Expect = 2e-47
 Identities = 95/273 (34%), Positives = 145/273 (53%), Gaps = 35/273 (12%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           DAE++E LP+L+++AT S G D IDL  C+E+GI V N PD     VA+ A  L+LA+ R
Sbjct: 54  DAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSR 113

Query: 122 RICESDRYVRSGEWKKGEFKMT--TKF--TGKSVGILGMGRIGTAIAKRAEAFDC-IIGY 176
           ++ E+    R+   ++G+F       F   GK++G++G GRIG  +A+ A  F   ++ Y
Sbjct: 114 KLREA--IERT---RRGDFSQAGLRGFELAGKTLGVVGTGRIGRRVARIARGFGMKVLAY 168

Query: 177 NSRTEK---PNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN 233
           +   ++     L ++Y   L +L     I+ +    T +T H++NR+    + P  VLIN
Sbjct: 169 DVVPDEELAERLGFRYVS-LEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLIN 227

Query: 234 IGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE---------------------L 272
             RG +VD   LV AL +G+L GAGLDV E E  + EE                     L
Sbjct: 228 TARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHAL 287

Query: 273 IGLENVVLLPHVASATVETRKAMADLVVGNLQA 305
           +   NV++ PHVA  T E  + + D  V N++A
Sbjct: 288 LRKPNVIITPHVAYNTKEALERILDTTVENIKA 320

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  155 bits (394), Expect = 6e-45
 Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 22/268 (8%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           DAEL+   P+L  V   +  +  +      E+GI V +  D   + VA+  +  IL  LR
Sbjct: 63  DAELLARAPRLRAVVHAAGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAAILLALR 122

Query: 122 RICESDRYVRSGE-WKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNS- 178
           RI       R+G  W     +      G++VGI+G GRIG A+ +    F   ++ Y+  
Sbjct: 123 RIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPY 182

Query: 179 ---------RTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
                      E  +L+        +L +   ++ +   LT ET+ +++ +++  +    
Sbjct: 183 LPAAEAAALGVELVSLD--------ELLARSDVVSLHAPLTPETRGMIDARLLALMRDGA 234

Query: 230 VLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP-DVPEELIGLENVVLLPHVASAT 288
             IN  RG LVDE  L++ L  GRL  A LDV + EP      L  L NV+L PH+A +T
Sbjct: 235 TFINTARGALVDEAALLAELRSGRL-RAALDVTDPEPLPPDSPLRTLPNVLLTPHIAGST 293

Query: 289 VETRKAMADLVVGNLQAHFGKKPLLTPV 316
            + R+ + D  +  L+     +PLL  V
Sbjct: 294 GDERRRLGDYALDELERFLAGEPLLHEV 321

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  154 bits (391), Expect = 8e-45
 Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 29/288 (10%)

Query: 43  INTHKDSIQAVVGSAAAGADA--------ELIESLPKLEIVATCSVGLDKIDLARCKEKG 94
           +   K     V   A    DA          ++  P L+ +A    G++ ID+    ++G
Sbjct: 14  LERFKKDKYEVKEDALEDPDALIVRSDKLHDMDFAPSLKAIARAGAGVNNIDVDAASKRG 73

Query: 95  IRVANTPDVLTDDVADLAIGLILAVLRRICESDRYV---------RSGEWKKGEFKMTTK 145
           I V NTP    + VA+L I ++LA+ R I ++ ++V         +  E  K +F + T+
Sbjct: 74  IVVFNTPGANANAVAELVIAMMLALSRNIIQAIKWVTNGDGDDISKGVEKGKKQF-VGTE 132

Query: 146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SRTEKPNLNYK--YYPNLIDLASN 199
             GK++G++G+G IG  +A  A A    +IGY+   S      L+ +     +L +L + 
Sbjct: 133 LRGKTLGVIGLGNIGRLVANAALALGMKVIGYDPYLSVEAAWKLSVEVQRVTSLEELLAT 192

Query: 200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGL 259
              + +   LT+ET+ ++N +++  + P  +L+N  RG +VDE  L+ AL +G+LGG   
Sbjct: 193 ADYITLHVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVT 252

Query: 260 DVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
           D  E     P  L  L NV+  PH+ ++T E  +  A +    +    
Sbjct: 253 DFPE-----PALLGHLPNVIATPHLGASTEEAEENCAVMAARQIMDFL 295

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  153 bits (389), Expect = 2e-44
 Identities = 88/256 (34%), Positives = 136/256 (53%), Gaps = 13/256 (5%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           D E IE    L+ +A    GL+ IDL   KEKGI + N P+   D V + A+G++LA+  
Sbjct: 53  DKEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFN 112

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180
           ++  +D+ VR+G W + E     +  GK+VGI+G G +G A AKR   F C +I Y+   
Sbjct: 113 KLNRADQEVRNGIWDR-EGNRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYK 171

Query: 181 EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
              +   +   +L  L     IL +   LT ET+ +VN++ I++       IN  RG +V
Sbjct: 172 NFGDAYAEQV-SLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVV 230

Query: 241 DEHELVSALLQGRLGGAGLDVFEHE----------PDVPEELIGLENVVLLPHVASATVE 290
              +LV AL  G++ GA LDV E+E          P+  E LI    V+L PH+A  T E
Sbjct: 231 VTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWTFE 290

Query: 291 TRKAMADLVVGNLQAH 306
           + + +A+++V  ++A 
Sbjct: 291 SYEKIAEVLVDKIKAL 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  152 bits (386), Expect = 5e-44
 Identities = 83/255 (32%), Positives = 140/255 (54%), Gaps = 14/255 (5%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           D E++  LP L+++   + G + +D+   K+KGI V N     T+ VA     ++L++L 
Sbjct: 54  DKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLG 113

Query: 122 RICESDRYVRSGEWKKGEF-----KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY 176
           RI   DRYV+SGE+ +        +   +  GK  GI+G+G IG  +AK A+AF   + Y
Sbjct: 114 RINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY 173

Query: 177 NSRTEKPNLNYKY-YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
            S T   N N +Y   +L +L     I+ +   L E+T++++  + +  L    +LIN+G
Sbjct: 174 YS-TSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG 232

Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGL---ENVVLLPHVASATVE 290
           RG +V+E +L  AL +  +  AGLDV E EP + +   L+ +   E +++ PH+A A+ E
Sbjct: 233 RGGIVNEKDLAKALDEKDI-YAGLDVLEKEP-MEKNHPLLSIKNKEKLLITPHIAWASKE 290

Query: 291 TRKAMADLVVGNLQA 305
            RK + + V  N++ 
Sbjct: 291 ARKTLIEKVKENIKD 305

Length = 311

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  147 bits (373), Expect = 5e-42
 Identities = 86/288 (29%), Positives = 143/288 (49%), Gaps = 12/288 (4%)

Query: 36  FEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGI 95
           FED+       +D I+ + G      D   +  +  L+ +   S G+D + L   K+KGI
Sbjct: 27  FEDELSDEEDLED-IEILYG-YNPDFDELDLAKMKNLKWIQLYSAGVDYLPLEYIKKKGI 84

Query: 96  RVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILG 155
            + N   + +  +A+  +G IL + + + ++ +  +  +WK        +  GK++  LG
Sbjct: 85  LLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKKWKMDSS--LLELYGKTILFLG 142

Query: 156 MGRIGTAIAKRAEAFDC-IIGYN-SRTEKPNLNYKYYP--NLIDLASNCQILVVACSLTE 211
            G IG  IAKR +AF   +IG N S  +    + K YP   L ++     I+V    LTE
Sbjct: 143 TGSIGQEIAKRLKAFGMKVIGVNTSGRDVEYFD-KCYPLEELDEVLKEADIVVNVLPLTE 201

Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE 271
           ET H+ +      +    + IN+GRG  VDE  L+ AL   ++ GA LDVFE EP +P++
Sbjct: 202 ETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEP-LPKD 260

Query: 272 --LIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317
             L  L+NV++ PH++  +    + + D+   NL++      LL  VV
Sbjct: 261 SPLWDLDNVLITPHISGVSEHFNERLFDIFYENLKSFLEDGELLKNVV 308

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  147 bits (372), Expect = 6e-42
 Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 11/267 (4%)

Query: 57  AAAGADAELIESLPKLEIVATCSVGLDK-IDLARCKEKGIRVANTPDVLTDDVADLAIGL 115
             +  + E + + P +  V     G++  ++     + G R  N      + VA+ A+ L
Sbjct: 35  TGSAREPERLPASPGVRWVQLPFAGVEAFVEAGVITDPGRRWTNAAGAYAETVAEHALAL 94

Query: 116 ILAVLRRICESDRYVRSGEW-KKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-I 173
           +LA LR++       R+  W    E  + T   G +V I+G G IG A+      F   +
Sbjct: 95  LLAGLRQL---PARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLAPFGAKV 151

Query: 174 IGYNSRTEKPNLNYKYYP--NLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVL 231
           I  N          +  P   L ++  +   +V+A  LT ET+H+V+   + A+ P   L
Sbjct: 152 IAVNRSGRPVEGADETVPADRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWL 211

Query: 232 INIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATV 289
           +N+ RG LVD   LV AL  G + GA LDV + EP +P+   L  L N ++ PHVA+   
Sbjct: 212 VNVARGPLVDTDALVDALRSGEIAGAALDVTDPEP-LPDGHPLWSLPNALITPHVANTPE 270

Query: 290 ETRKAMADLVVGNLQAHFGKKPLLTPV 316
             R  +A+ V  N++A    +PLL  V
Sbjct: 271 VIRPLLAERVAENVRAFAAGEPLLGVV 297

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  146 bits (370), Expect = 1e-41
 Identities = 89/299 (29%), Positives = 146/299 (48%), Gaps = 12/299 (4%)

Query: 22  QEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVG 81
             +E++F   +L      EQ     + +  A+    A   DA  + + P+L+++   + G
Sbjct: 19  SPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVAL--DAAALAAAPQLKLILVAATG 76

Query: 82  LDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKK-GEF 140
            + +DLA  +E+GI V N     T  VA   + L+LA+  R+ +  + V +G W++  +F
Sbjct: 77  TNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQF 136

Query: 141 KM----TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDL 196
            +      +  GK++G+LG G +G A+A+ AEAF   +       +P    +    L +L
Sbjct: 137 CLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRL--PLDEL 194

Query: 197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGG 256
                 L + C LTE T+H++  + +  + P  +LIN  RG LVDE  L  AL  G LGG
Sbjct: 195 LPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGG 254

Query: 257 AGLDVFEHEPDV---PEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPL 312
           A  DV   EP V   P     +  +++ PH A  + E R+ +   +  N +A F  KPL
Sbjct: 255 AATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL 313

Length = 317

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  144 bits (366), Expect = 9e-41
 Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 35/278 (12%)

Query: 61  ADAELIESLPKLEI--VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILA 118
            DA ++E L +L +  +A    G + +DL   KE GI V   P      VA+ A+ L+LA
Sbjct: 56  LDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLA 115

Query: 119 VLRRICESDRYVRSGEWKKGEFKMT--TKFT--GKSVGILGMGRIGTAIAKRAEAFDC-I 173
           + R+I  +   VR     +G F +     F   GK+VG++G G+IG A A+  + F C +
Sbjct: 116 LNRKIHRAYNRVR-----EGNFSLDGLLGFDLHGKTVGVIGTGKIGQAFARILKGFGCRV 170

Query: 174 IGY----NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
           + Y    N    K  + Y    +L +L +   I+ + C LT ET H++N + I A    G
Sbjct: 171 LAYDPYPNPELAKLGVEYV---DLDELLAESDIISLHCPLTPETHHLINAETI-AKMKDG 226

Query: 230 V-LINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP--------------DVPEELIG 274
           V LIN  RG L+D   L+ AL  G++GG GLDV+E E               DV   L+ 
Sbjct: 227 VMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLARLLS 286

Query: 275 LENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPL 312
             NV++  H A  T E    +A+  + NL      KPL
Sbjct: 287 FPNVLITGHQAFFTKEALTNIAETTLENLDDFEAGKPL 324

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  140 bits (355), Expect = 2e-39
 Identities = 78/278 (28%), Positives = 121/278 (43%), Gaps = 43/278 (15%)

Query: 57  AAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDV---------LTDD 107
                   L+  LP L+ + +   G+D +             + PDV         L   
Sbjct: 44  LVWKPPPGLLARLPNLKAIFSLGAGVDHLLAD---------PDLPDVPIVRLVDPGLAQG 94

Query: 108 VADLAIGLILAVLRRICESDRYV---RSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA 164
           +A+  +  +L + R +   DRY    R G WK    +   +     VG+LG+G +G A+A
Sbjct: 95  MAEYVLAAVLRLHRDM---DRYAAQQRRGVWKPLPQRPAAERR---VGVLGLGELGAAVA 148

Query: 165 KRAEAFDCIIGYN----SRTEKPNLNYKYY---PNLIDLASNCQILVVACSLTEETQHIV 217
           +R  A     G+     SR+ K       +     L    +   ILV    LT ET+ I+
Sbjct: 149 RRLAAL----GFPVSGWSRSPKDIEGVTCFHGEEGLDAFLAQTDILVCLLPLTPETRGIL 204

Query: 218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGL 275
           N +++  L     LIN+GRG  + E +L++AL  G L GA LDVFE EP +P +  L   
Sbjct: 205 NAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEP-LPADHPLWRH 263

Query: 276 ENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL 313
             V + PH+A+ T     + A  V  N++     +PL 
Sbjct: 264 PRVTVTPHIAAIT--DPDSAAAQVAENIRRLEAGEPLP 299

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  137 bits (347), Expect = 2e-38
 Identities = 82/264 (31%), Positives = 122/264 (46%), Gaps = 9/264 (3%)

Query: 52  AVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADL 111
            V    AA    E + +LP+L +V T S G D + L    E G+ + N   V     A+L
Sbjct: 41  VVPPYMAAPPVLEALRALPRLRVVQTLSAGYDGV-LPLLPE-GVTLCNARGVHDASTAEL 98

Query: 112 AIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD 171
           A+ LILA LR +    R    G W+      T     + V I+G G IG AI +R   F+
Sbjct: 99  AVALILASLRGLPRFVRAQARGRWEPRR---TPSLADRRVLIVGYGSIGRAIERRLAPFE 155

Query: 172 CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVL 231
             +   +RT +P         L  L     ++V+   LT+ET+ +V+ + +  +    +L
Sbjct: 156 VRVTRVARTARPGEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALL 215

Query: 232 INIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATV 289
           +N+ RG +VD   LV+ L  GRL  A LDV + EP +P    L     V++ PHV  AT 
Sbjct: 216 VNVARGPVVDTDALVAELASGRL-RAALDVTDPEP-LPPGHPLWSAPGVLITPHVGGATP 273

Query: 290 ETRKAMADLVVGNLQAHFGKKPLL 313
                   LV   L+ +   +PL 
Sbjct: 274 AFLPRAYALVRRQLRRYAAGEPLE 297

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  133 bits (336), Expect = 1e-36
 Identities = 79/251 (31%), Positives = 127/251 (50%), Gaps = 13/251 (5%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
             E++E+ PKL  +    +G +++DL    ++GI V N P   T  VA+L IG I+ + R
Sbjct: 55  TEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLAR 114

Query: 122 RICESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN 177
           R+ + +     G W K   G  ++     GK++GI+G G IG+ ++  AEA    +I Y+
Sbjct: 115 RLPDRNAAAHRGIWNKSATGSHEV----RGKTLGIIGYGHIGSQLSVLAEALGMRVIFYD 170

Query: 178 SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
              + P  N +   +L +L +    + +    T  T++++  + I  +    +LIN  RG
Sbjct: 171 IAEKLPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEP---DVP--EELIGLENVVLLPHVASATVETR 292
            +VD   L  AL  G L GA +DVF  EP     P    L GL NV+L PH+  +T E +
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHIGGSTEEAQ 290

Query: 293 KAMADLVVGNL 303
           + +   V G L
Sbjct: 291 ENIGLEVAGKL 301

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  133 bits (336), Expect = 2e-36
 Identities = 82/271 (30%), Positives = 140/271 (51%), Gaps = 24/271 (8%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLT---DDVADLAIGLILA 118
           DA++I    +++++    VGL+ +D+    + GI+VA  P   T      A++AI L+L 
Sbjct: 73  DADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLG 132

Query: 119 VLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNS 178
           +LR+  E    +++   + GE  +     GK+V ILG G IG  +AKR   F   +    
Sbjct: 133 LLRKQNEMQISLKAR--RLGE-PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATR 189

Query: 179 R--TEKPN-------------LNYKYYP-NLIDLASNCQILVVACSLTEETQHIVNRQVI 222
           R  T +P              ++ K    ++ + A    I+V+ C+LT+ET  IVN + +
Sbjct: 190 RSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL 249

Query: 223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE-LIGLENVVLL 281
           +++    +L+NI RG L+D   +++AL  G LGG  +DV   EP  P++ ++   NV++ 
Sbjct: 250 SSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIIT 309

Query: 282 PHVASATVETRKAMADLVVGN-LQAHFGKKP 311
           PHVA  T  + ++M  +V    LQ H G+  
Sbjct: 310 PHVAGVTEYSYRSMGKIVGDAALQLHAGRPL 340

Length = 347

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  130 bits (329), Expect = 2e-35
 Identities = 84/273 (30%), Positives = 126/273 (46%), Gaps = 31/273 (11%)

Query: 62  DAELIESLPKLEI--VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAV 119
            AEL+E L +  +  ++T S+G D IDL   KE GI+V+N      + VAD  + L+L  
Sbjct: 57  SAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNVT-YSPNSVADYTVMLMLMA 115

Query: 120 LRRI------CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC- 172
           LR+        E + Y   G           +    +VG++G GRIG A+ K    F C 
Sbjct: 116 LRKYKQIMKRAEVNDYSLGG-------LQGRELRNLTVGVIGTGRIGQAVIKNLSGFGCK 168

Query: 173 IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232
           I+ Y+    +    Y  Y +L  L     I+ +   LTEET H++N++ I  +    ++I
Sbjct: 169 ILAYDPYPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIII 228

Query: 233 NIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV-----------PEELIGLE---NV 278
           N  RG L+D   L+  L  G++GGA LDV E E  +             EL  L    NV
Sbjct: 229 NTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAILRSFPNV 288

Query: 279 VLLPHVASATVETRKAMADLVVGNLQAHFGKKP 311
           +L PH+A  T +    M +  + +L A      
Sbjct: 289 ILTPHMAFYTDQAVSDMVENSIESLVAFEKGGE 321

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  130 bits (330), Expect = 4e-35
 Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 11/259 (4%)

Query: 63  AELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
           AE I   P L++  T  +G D +DL    E GI VA      +  VA+  + +ILA++R 
Sbjct: 106 AERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRN 165

Query: 123 ICESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE 181
              S R    G W   +    +    G +VGI+G GRIG A+ +R + FD  + Y  R  
Sbjct: 166 YEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR 225

Query: 182 KP-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236
            P      L   Y+ +   L S C ++ + C L  ET+H+ +  V++ +     L+N  R
Sbjct: 226 LPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTAR 285

Query: 237 GLLVDEHELVSALLQGRLGGAGLDVFEHEP---DVPEELIGLENVVLLPHVASATVETRK 293
           G +VD   +V AL  G L G   DV+  +P   D P     +    + PH++  T+  + 
Sbjct: 286 GKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWR--TMPRNGMTPHISGTTLSAQA 343

Query: 294 AMADLVVGNLQAHFGKKPL 312
             A      L+  F  +P+
Sbjct: 344 RYAAGTREILECFFEGRPI 362

Length = 385

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  129 bits (326), Expect = 5e-35
 Identities = 88/270 (32%), Positives = 129/270 (47%), Gaps = 30/270 (11%)

Query: 52  AVVGSAAAGADAELIESLPKLEI--VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVA 109
            VV       D E+ E L +  I  +A  S G+D IDL   KE G+++ N P      +A
Sbjct: 47  GVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIA 106

Query: 110 DLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGK-----SVGILGMGRIGTAIA 164
           + A+   L +LR   E DR V      KG+F+      G+     +VGI+G GRIG+A A
Sbjct: 107 EFAVTQALNLLRNTPEIDRRVA-----KGDFRWAPGLIGREIRDLTVGIIGTGRIGSAAA 161

Query: 165 KRAEAFDC-IIGYNSRTEKPNLN--YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221
           K  + F   +I Y      P L     YY +L DL     I+ +   LT+E  H++N + 
Sbjct: 162 KIFKGFGAKVIAY-DPYPNPELEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEA 220

Query: 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHE--------------PD 267
              +    +L+N  RG LVD   L+ AL  G++ GA LD +E+E               +
Sbjct: 221 FAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDE 280

Query: 268 VPEELIGLENVVLLPHVASATVETRKAMAD 297
           V +ELI + NV++ PH+A  T    K M +
Sbjct: 281 VLKELIAMPNVLITPHIAFYTDTAVKNMVE 310

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  129 bits (327), Expect = 9e-35
 Identities = 89/303 (29%), Positives = 147/303 (48%), Gaps = 33/303 (10%)

Query: 37  EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKL--EIVATCSVGLDKIDLARCKEKG 94
           ED    I    D    V+G         L  +L K   +  +  +VG + +D+    + G
Sbjct: 53  EDIIALIGDKCD---GVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYG 109

Query: 95  IRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTG-----K 149
           I V NTP VLT+  A+LA  L LA  RRI E+D ++R+G ++     +   F G     +
Sbjct: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGW---LPHLFVGNLLKGQ 166

Query: 150 SVGILGMGRIGTAIAKR-AEAFDCIIGY-----NSRTEK--------------PNLNYKY 189
           +VG++G GRIG+A A+   E F   + Y     ++R EK                + +K 
Sbjct: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKR 226

Query: 190 YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL 249
             ++ ++     ++ +   L + T H++N++ +  +  + VL+N  RG ++DE  LV  L
Sbjct: 227 ASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHL 286

Query: 250 LQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGK 309
               +   GLDVFE EP +   L  ++N V++PH+ASA+  TR+ MA L   N+      
Sbjct: 287 KANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKG 346

Query: 310 KPL 312
            P+
Sbjct: 347 YPV 349

Length = 386

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  125 bits (316), Expect = 8e-34
 Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 17/279 (6%)

Query: 38  DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
             EQ I   KD+   +V ++      E +  LPKL+++A  + G + +DL   KE GI V
Sbjct: 34  SAEQTIERAKDA--DIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAV 91

Query: 98  ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEW-KKGEFKMT----TKFTGKSVG 152
            N     +  V +  +G+I A+   +    R   S  W    +F       T   G ++G
Sbjct: 92  KNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLG 151

Query: 153 ILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEE 212
           + G G +GT + + A+A    + Y            Y P   ++     I+ + C LTE 
Sbjct: 152 VFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTP-FEEVLKQADIVTLHCPLTET 210

Query: 213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE- 271
           TQ+++N + +  + P   LIN GRG LVDE  L+ AL  G++ GA LDV   EP  PE+ 
Sbjct: 211 TQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEP--PEKD 268

Query: 272 --LIG----LENVVLLPHVASATVETRKAMADLVVGNLQ 304
             LI     L N+++ PH+A A+      + + V  N++
Sbjct: 269 NPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIE 307

Length = 314

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  125 bits (315), Expect = 2e-33
 Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 11/258 (4%)

Query: 63  AELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
           AE I     L++  T  +G D +DL    ++GI VA         VA+  + +IL ++R 
Sbjct: 76  AERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRN 135

Query: 123 ICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE 181
                     G W   +  K      GK+VG +G GRIG  + +R + FD  + Y  R  
Sbjct: 136 YVPGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDRHR 195

Query: 182 KP-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236
            P      L    + +L D+ S C ++ + C L  ET+ + N+++++ +     L+N  R
Sbjct: 196 LPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTAR 255

Query: 237 GLLVDEHELVSALLQGRLGGAGLDVFEHEP---DVPEELIGLENVVLLPHVASATVETRK 293
           G + D   +  AL  G L G   DV+  +P   D P   +   N  + PH++  T++ + 
Sbjct: 256 GKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMP--NNAMTPHISGTTLDAQA 313

Query: 294 AMADLVVGNLQAHFGKKP 311
             A      L+  F  +P
Sbjct: 314 RYAAGTKEILERFFEGEP 331

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  120 bits (302), Expect = 9e-32
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 9/213 (4%)

Query: 108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA 167
           +A+  +  ILA  +R+ E      + +W     +      G ++GI+G G IG A+A+RA
Sbjct: 99  IAEFVLAAILAAAKRLPEI-WVKGAEQW---RREPLGSLAGSTLGIVGFGAIGQALARRA 154

Query: 168 EAFDCIIGYNSRTEKPN--LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225
            A    +    R+ +P+     +   +L +L +    LV+A  LT ET+H++N  V+   
Sbjct: 155 LALGMRVLALRRSGRPSDVPGVEAAADLAELFARSDHLVLAAPLTPETRHLINADVLAQA 214

Query: 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPH 283
            P   LINI RG LVD+  L+ AL  GR+  A LDV + EP +PE   L     V L PH
Sbjct: 215 KPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDPEP-LPEGHPLYTHPRVRLSPH 273

Query: 284 VASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
            ++   + R+ +AD  + NL  +   +PL   V
Sbjct: 274 TSAIAPDGRRNLADRFLENLARYRAGQPLHDLV 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  117 bits (296), Expect = 1e-30
 Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 31/257 (12%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           +  L+E   K++ V T ++G D ID    KE+GI  AN P    + VA+  +  +L + +
Sbjct: 49  NEALLE-GSKVKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQ 107

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNS-R 179
           R   S +                   GK+VGI+G+G +G+ +A+R EA    ++  +  R
Sbjct: 108 RQGFSLK-------------------GKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPR 148

Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIG 235
            E        + +L +L +   I+ +   LT +    T H+++   + AL P  +LIN  
Sbjct: 149 AEAEGDPG--FVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINAS 206

Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLL-PHVASATVETRKA 294
           RG ++D   L++ L +G+     LDV+E+EP++  EL  L+ V +  PH+A  ++E +  
Sbjct: 207 RGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLEL--LDKVDIATPHIAGYSLEGKAR 264

Query: 295 MADLVVGNLQAHFGKKP 311
             +++   L    G K 
Sbjct: 265 GTEMIYEALCQFLGLKA 281

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  112 bits (283), Expect = 2e-28
 Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 21/254 (8%)

Query: 63  AELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
            E++ +  KL  +    +G +++DL    ++GI V N P   T  VA+L IG I+ +LR 
Sbjct: 67  EEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRG 126

Query: 123 ICESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNS 178
           I E +     G W K   G F++     GK++GI+G G IGT ++  AE+    +  Y+ 
Sbjct: 127 IPEKNAKAHRGGWNKSAAGSFEVR----GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDI 182

Query: 179 RTEKPNLNYKYYPNLIDLASNCQILVVACSL----TEETQHIVNRQVINALGPKGVLINI 234
             + P  N +   +L +L +   ++    SL    T  T++++  + +  + P  +LIN 
Sbjct: 183 EDKLPLGNARQVGSLEELLAQSDVV----SLHVPETPSTKNMIGAEELALMKPGAILINA 238

Query: 235 GRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE-----LIGLENVVLLPHVASATV 289
            RG +VD   L  AL  G L GA +DVF  EP    +     L GL+NV+L PH+  +T 
Sbjct: 239 SRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQ 298

Query: 290 ETRKAMADLVVGNL 303
           E ++ +   V G L
Sbjct: 299 EAQENIGLEVAGKL 312

Length = 409

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  110 bits (278), Expect = 4e-28
 Identities = 75/284 (26%), Positives = 119/284 (41%), Gaps = 38/284 (13%)

Query: 67  ESLPKLEIVATCSVGLDK-IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE 125
           E +P L +V   S G D  +     K+  + +     +    +A+  IG  L +      
Sbjct: 50  EDVPNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHF-- 107

Query: 126 SDRYV---RSGEWKKGEFKMTTK-FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR- 179
             +Y+   +   W + +   + +   GK VGILG G IG   A+ A+A    +  Y    
Sbjct: 108 -LQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSP 166

Query: 180 --TEKPNLNYKY-YPNLID---------------------LASNCQILVVACSLTEETQH 215
             T +   +  Y  P   D                     L  +  +LVV+  LT  T+H
Sbjct: 167 RPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSLPLTPATKH 226

Query: 216 IVNRQVINALGPKG-VLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE--EL 272
           ++  +    L  +   + NI RG LVD   LV+AL  G++ GA LDV + EP +P    L
Sbjct: 227 LLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEP-LPADHPL 285

Query: 273 IGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
               NV++ PHV+  T E      D++  NL+     +PL+  V
Sbjct: 286 WSAPNVIITPHVSWQTQEYFDRALDVLEENLERLRKGEPLINLV 329

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  109 bits (274), Expect = 1e-27
 Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 19/273 (6%)

Query: 51  QAVVGSAAAGADAELIESLPKLEI--VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDV 108
            AV+      AD E +E   +  I  V T +VG + IDL   KE G ++A  P    + +
Sbjct: 46  DAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAI 105

Query: 109 ADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAE 168
           A+LA  L + + R    +     +  +K   F  + +    +VGI+G GRIG   AK  +
Sbjct: 106 AELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIGLTAAKLFK 165

Query: 169 AFDC-IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACS-LTEETQHIVNRQVINALG 226
                +IGY+        +   + +L +L     I+ +    +  +   ++N++ I+ + 
Sbjct: 166 GLGAKVIGYDIYPSDAAKDVVTFVSLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMK 225

Query: 227 PKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV--------------PEEL 272
              +LIN  RG L DE  ++ AL  G+L G G DV  +E ++               E+L
Sbjct: 226 DGAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVVEKL 285

Query: 273 IGL-ENVVLLPHVASATVETRKAMADLVVGNLQ 304
           + L   V+L PH+ S T E    M +    NL+
Sbjct: 286 LDLYPRVLLTPHIGSYTDEALSNMIETSYENLK 318

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 98.4 bits (245), Expect = 9e-24
 Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 11/256 (4%)

Query: 61  ADAELIESLP----KLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLI 116
           A+A LI+       K +++ + S G+D ID++   E  +  +N     +  VA+ A  L+
Sbjct: 35  AEAILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALL 93

Query: 117 LAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY 176
           LA  + ICE++  +++G +K+   K+      KS+GILG G IG  +A  A+AF   I  
Sbjct: 94  LAWAKNICENNYNMKNGNFKQSPTKL---LYNKSLGILGYGGIGRRVALLAKAFGMNIYA 150

Query: 177 NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236
            +R+   +     Y    D+      ++++  LT+ET+ ++N ++++       +IN+ R
Sbjct: 151 YTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVAR 210

Query: 237 GLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASA-TVETRKAM 295
             +VD++++++ L          DV+ +EP + E     +NV+L PHVA   + E  +  
Sbjct: 211 ADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNP--DNVILSPHVAGGMSGEIMQPA 268

Query: 296 ADLVVGNLQAHFGKKP 311
             L   N++  F  KP
Sbjct: 269 VALAFENIKNFFEGKP 284

Length = 303

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 98.8 bits (246), Expect = 2e-23
 Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 13/244 (5%)

Query: 63  AELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
           AE I+    LE++ T  +G D IDL      G+ VA         VA+  +  IL +LR 
Sbjct: 113 AERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRN 172

Query: 123 ICESDRYVRSGEWKKGEFKMTT-KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE 181
                  V SGEW             GK+VG +G GRIG  + +R + F+C + Y+ R +
Sbjct: 173 FLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK 232

Query: 182 KP-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIG 235
                      K+  +L  +   C ++V+   LTE+T+ + N++ I  +  KGVLI N  
Sbjct: 233 MDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKM-KKGVLIVNNA 291

Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEP---DVPEELIGLENVVLLPHVASATVETR 292
           RG ++D   +  A   G +GG G DV+  +P   D P     + N  + PH++  T++ +
Sbjct: 292 RGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY--MPNHAMTPHISGTTIDAQ 349

Query: 293 KAMA 296
              A
Sbjct: 350 LRYA 353

Length = 386

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 97.4 bits (243), Expect = 2e-23
 Identities = 83/289 (28%), Positives = 118/289 (40%), Gaps = 37/289 (12%)

Query: 46  HKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVAN-TPDV- 103
           H D+   VV   ++   A+    L +L  V   + G D           +  A   P+V 
Sbjct: 34  HHDAEVLVVWGNSSDNLADAARRLTRLRWVQALAAGPD----------AVLAAGFAPEVA 83

Query: 104 ------LTD-DVADLAIGLILAVLRRICESDRYVRSGEWKK--------GEFKMTTKFTG 148
                 L D  VA+  + LILA +RR+ E     R   W                T   G
Sbjct: 84  VTSGRGLHDGTVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLG 143

Query: 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYP--NLIDLASNCQILVVA 206
             V I G G IG  +A    A    +   +R+      +       L +L     +LV+ 
Sbjct: 144 ARVLIWGFGSIGQRLAPLLTALGARVTGVARSAGERAGFPVVAEDELPELLPETDVLVMI 203

Query: 207 CSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP 266
              T  T H ++ +V+ AL     ++N+GRG  VDE  LV+AL  GRLGGA LDV   EP
Sbjct: 204 LPATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEP 263

Query: 267 DVPEE--LIGLENVVLLPHVASATVETR-KAMADLVVGNLQAHFGKKPL 312
            +P    L    N++L PH A      R +   +L+  NL+A     PL
Sbjct: 264 -LPASSPLWDAPNLILTPHAAGG----RPQGAEELIAENLRAFLAGGPL 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 94.4 bits (235), Expect = 4e-22
 Identities = 66/253 (26%), Positives = 109/253 (43%), Gaps = 30/253 (11%)

Query: 75  VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGE 134
           +A  S G D  DL    +  + ++N P    + +A+  +   + ++R   +    VR   
Sbjct: 73  IAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVR--- 129

Query: 135 WKKGEFKMTTKFTGKS-----VGILGMGRIGTAIAK-RAEAFDC-IIGYNSRTEKPNLNY 187
             + +F+       +S     V ++G GRIG A+AK  A+ +   ++ Y+         Y
Sbjct: 130 --EHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATY 187

Query: 188 KYYPNLIDLA-SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV 246
             Y + I+ A     I+ +    T+   ++ N  +        V +N  RG LVD   L+
Sbjct: 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALL 247

Query: 247 SALLQGRLGGAGLDVFEHE-PDVP-------------EELIGLENVVLLPHVASATVETR 292
            AL  G + GA LD +E E P  P             E LI  E+V+L PH+A  T    
Sbjct: 248 DALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDA-- 305

Query: 293 KAMADLVVGNLQA 305
            A+ +L+V  L A
Sbjct: 306 -AVKNLIVDALDA 317

Length = 332

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 94.3 bits (235), Expect = 8e-22
 Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 31/231 (13%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           D  L+E   ++  V TC++G D +DL    E GI  ++ P      V D  +G +L +  
Sbjct: 50  DRALLEG-SRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAE 108

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD--CIIGYNSR 179
           R              +G          ++ G++G G +G  + +         ++    R
Sbjct: 109 R--------------EGV-----DLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR 149

Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIG 235
            E        + +L  +   C ++ +   LT+E    T+H+++   + +L P   LIN  
Sbjct: 150 QEAEGDGD--FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINAS 207

Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVL-LPHVA 285
           RG +VD   L  ALL G    A LDV+E EP +  EL   +   +  PH+A
Sbjct: 208 RGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLEL--ADLCTIATPHIA 256

Length = 381

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 93.4 bits (232), Expect = 1e-21
 Identities = 67/260 (25%), Positives = 127/260 (48%), Gaps = 25/260 (9%)

Query: 67  ESLPKLE-----IVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           +  PKLE      +A  + G D  DL   K+  I ++N P    + +A+ ++ + L ++R
Sbjct: 60  DVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVR 119

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180
           R  + +R V++ ++      M+      +V I+G GRIG A AK    F   I  Y++  
Sbjct: 120 RFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179

Query: 181 EKPNLNYKYYPNLIDLA-SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
            K +L++  Y + +  A  +  I+ +     +E+ H+ ++ + + +    +L+N  RG +
Sbjct: 180 NK-DLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238

Query: 240 VDEHELVSALLQGRLGGAGLDVFEHEP--------------DVPEELIGLENVVLLPHVA 285
           ++  +L++A+  G L GA +D +E+E                   ELI  E +++ PH+A
Sbjct: 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIA 298

Query: 286 SATVETRKAMADLVVGNLQA 305
             + E   A+ +LV G L A
Sbjct: 299 FFSDE---AVQNLVEGGLNA 315

Length = 330

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 9/182 (4%)

Query: 112 AIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD 171
           A+  +L   RR  +      S  W+         FT   +GILG G +G+ +A+  + + 
Sbjct: 103 AVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFT---IGILGAGVLGSKVAQSLQTWG 159

Query: 172 CIIGYNSRTEK--PNL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPK 228
             +   SR+ K  P + ++     L    S  ++L+     T ET  I+N+Q++  L   
Sbjct: 160 FPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDG 219

Query: 229 GVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVAS 286
             L+N+ RG+ V E +L++AL  G++ GA LDVF  EP +P E  L     V + PHVA+
Sbjct: 220 AYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREP-LPPESPLWQHPRVAITPHVAA 278

Query: 287 AT 288
            T
Sbjct: 279 VT 280

Length = 312

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 39/260 (15%)

Query: 50  IQAVVG-----SAAAGADAELIESLPK----------LEIVATCSVGLDKIDLARCKEKG 94
           ++AV G     +  A ADA ++ S+ K          ++ V T + G D +D A  K+ G
Sbjct: 22  VKAVPGRPIPVAQLADADALMVRSVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAG 81

Query: 95  IRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGIL 154
           I  +  P      V +     + + L  + E D +                   ++VGI+
Sbjct: 82  IGFSAAPGCNAIAVVEY----VFSSLLMLAERDGFS---------------LHDRTVGIV 122

Query: 155 GMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEE-- 212
           G+G +G  +  R EA                +   + +L +L     IL     L ++  
Sbjct: 123 GVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGP 182

Query: 213 --TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE 270
             T H+ + ++I +L P  +LIN  RG +VD   L++ L +G+     LDV+E EP++  
Sbjct: 183 YKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNV 242

Query: 271 ELIGLENVVLLPHVASATVE 290
           EL+   ++   PH+A  T+E
Sbjct: 243 ELLKKVDIG-TPHIAGYTLE 261

Length = 378

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 66/280 (23%), Positives = 109/280 (38%), Gaps = 35/280 (12%)

Query: 37  EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK----IDLARCKE 92
           E  E+ I    D+   V+ S     D E++E+ P ++ +  C     +    +D+A  +E
Sbjct: 35  ESDEEIIERIGDA-DCVLVSYTTQIDEEVLEACPNIKYIGMCCSLYSEESANVDIAAARE 93

Query: 93  KGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYV---RSGEWKKGEFKMTTKFTGK 149
            GI V    D   + V +  I           E  R +      +WK+       + TG 
Sbjct: 94  NGITVTGIRDYGDEGVVEYVI----------SELIRLLHGFGGKQWKE----EPRELTGL 139

Query: 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---NYKYYPNLIDLASNCQILVVA 206
            VGI+G+G  G  IA     F   + Y SRT KP+      +Y P L +L     ++   
Sbjct: 140 KVGIIGLGTTGQMIADALSFFGADVYYYSRTRKPDAEAKGIRYLP-LNELLKTVDVI--- 195

Query: 207 CSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ--GRLGGAGLDVFEH 264
           C+   +   ++  +    LG   +L N   G   +    V AL +     G    D    
Sbjct: 196 CTCLPKNVILLGEEEFELLGDGKILFNTSLGPSFE----VEALKKWLKASGYNIFDCDTA 251

Query: 265 EPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQ 304
                EEL+   NV+     A  T +  + ++  V+ NL+
Sbjct: 252 GALGDEELLRYPNVICTNKSAGWTRQAFERLSQKVLANLE 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 15/212 (7%)

Query: 53  VVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARC-KEKGIRVANTPDVLTDDVADL 111
            V      A+  LI+ L    ++ T ++G D  DL       G+       V    +   
Sbjct: 70  KVKEPLTNAEYALIQKLG-DRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSN 128

Query: 112 AIGLILAVLRRIC-ESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF 170
           +IG     ++ I    +           +        GK+V ++G G +G   A+     
Sbjct: 129 SIGAGELSVQFIARFLEVQQPGRLGGAPDVA------GKTVVVVGAGVVGKEAAQMLRGL 182

Query: 171 DCIIGYN-----SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVN-RQVINA 224
              +        +  +   L  K    L +  +   ++V    L  +   I+   +++  
Sbjct: 183 GAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQ 242

Query: 225 LGPKGVLINIGRGLLVDEHELVSALLQGRLGG 256
           + P  V++N+  G +     L + LL+   G 
Sbjct: 243 MKPGSVIVNVAVGAVGCVQALHTQLLEEGHGV 274

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	100.0
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.91
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.83
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.64
PLN02494	477	adenosylhomocysteinase	99.61
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.52
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.49
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.46
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.44
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.37
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.27
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.27
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.26
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.26
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.25
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.19
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.15
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.1
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.09
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.05
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.05
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.03
PLN02858	1378	fructose-bisphosphate aldolase	99.02
PLN02256	304	arogenate dehydrogenase	99.02
PLN02712	667	arogenate dehydrogenase	99.02
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.0
PLN02858	1378	fructose-bisphosphate aldolase	98.96
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.92
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.9
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.89
PRK08655	437	prephenate dehydrogenase; Provisional	98.86
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.86
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.81
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.8
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.8
PRK07417	279	arogenate dehydrogenase; Reviewed	98.8
PRK05225	487	ketol-acid reductoisomerase; Validated	98.79
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.78
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.76
PRK06545	359	prephenate dehydrogenase; Validated	98.74
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.73
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.71
PLN02712	667	arogenate dehydrogenase	98.7
PLN02688	266	pyrroline-5-carboxylate reductase	98.7
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.7
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.67
PRK08818	370	prephenate dehydrogenase; Provisional	98.66
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.66
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.66
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.66
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.65
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.61
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.61
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.6
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.59
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.59
PRK08507	275	prephenate dehydrogenase; Validated	98.59
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.56
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.56
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.56
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.55
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.54
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.53
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.51
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.51
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.51
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.5
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.48
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.48
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.48
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.46
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.46
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.45
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.45
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.44
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.43
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.42
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.41
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.39
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.37
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.35
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.34
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.31
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.31
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.29
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.29
PRK07680	273	late competence protein ComER; Validated	98.27
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.27
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.25
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.23
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.21
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.19
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.19
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.18
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.15
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.12
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.1
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.08
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.07
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.05
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.03
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.02
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.97
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.97
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.96
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.96
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.95
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.95
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.94
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.92
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.91
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.89
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.87
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PLN00203	519	glutamyl-tRNA reductase	97.85
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.84
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
PRK06141	314	ornithine cyclodeaminase; Validated	97.79
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.79
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.78
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.78
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.77
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.77
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.77
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.76
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.74
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.71
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.69
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.69
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.68
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.68
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.68
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.67
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.67
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.66
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.66
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.6
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.6
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.59
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.57
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.57
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.57
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.57
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.55
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.55
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.53
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.49
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.49
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.47
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.46
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.46
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.46
PRK07340	304	ornithine cyclodeaminase; Validated	97.44
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.44
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.37
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.37
PRK14982	340	acyl-ACP reductase; Provisional	97.37
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.36
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.34
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.34
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.32
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.31
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.3
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.3
PLN02477	410	glutamate dehydrogenase	97.28
PRK08618	325	ornithine cyclodeaminase; Validated	97.26
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.24
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.23
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.22
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.2
PRK06046	326	alanine dehydrogenase; Validated	97.18
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.17
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.15
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.12
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.09
PRK08291	330	ectoine utilization protein EutC; Validated	97.09
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.09
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.08
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.07
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.04
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.03
PRK06823	315	ornithine cyclodeaminase; Validated	97.01
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.01
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.99
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.97
PTZ00117	319	malate dehydrogenase; Provisional	96.96
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.96
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.96
PRK06444	197	prephenate dehydrogenase; Provisional	96.95
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.94
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.92
PRK06199	379	ornithine cyclodeaminase; Validated	96.92
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.89
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.86
PRK09414	445	glutamate dehydrogenase; Provisional	96.86
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.85
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.81
PRK07589	346	ornithine cyclodeaminase; Validated	96.79
PRK06407	301	ornithine cyclodeaminase; Provisional	96.78
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.77
PRK14031	444	glutamate dehydrogenase; Provisional	96.76
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.75
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.75
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.73
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.7
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.69
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.64
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.56
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.53
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.51
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.51
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.51
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.5
COG5322	351	Predicted dehydrogenase [General function predicti	96.5
PRK14030	445	glutamate dehydrogenase; Provisional	96.48
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.46
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.45
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.42
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.42
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.41
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.41
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.38
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.37
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.32
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.31
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.31
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.28
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.27
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.21
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.19
PRK06223	307	malate dehydrogenase; Reviewed	96.17
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.16
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.13
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.13
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.12
PRK12862	763	malic enzyme; Reviewed	96.1
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.08
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.05
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.04
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.03
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.02
PRK12861	764	malic enzyme; Reviewed	96.02
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.0
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.99
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	95.97
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.96
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.95
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	95.91
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.91
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.89
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.89
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.88
PLN02527	306	aspartate carbamoyltransferase	95.85
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.83
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	95.77
PRK02102	331	ornithine carbamoyltransferase; Validated	95.76
PRK10637	457	cysG siroheme synthase; Provisional	95.74
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.74
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.72
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.69
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.69
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.66
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.63
PRK04284	332	ornithine carbamoyltransferase; Provisional	95.62
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.61
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.53
PRK08223	287	hypothetical protein; Validated	95.52
PRK09496	453	trkA potassium transporter peripheral membrane com	95.51
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.51
PLN02342	348	ornithine carbamoyltransferase	95.5
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	95.47
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.44
PRK06270	341	homoserine dehydrogenase; Provisional	95.42
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.34
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.33
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.29
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.28
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.24
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.23
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.23
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.22
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.21
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.21
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.19
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.18
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.08
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.07
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.04
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.02
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.99
PLN02602	350	lactate dehydrogenase	94.97
PRK11579	346	putative oxidoreductase; Provisional	94.96
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	94.9
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.87
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	94.87
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	94.86
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	94.86
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.86
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	94.82
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	94.76
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	94.76
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	94.73
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.72
PRK05086	312	malate dehydrogenase; Provisional	94.7
PRK10669	558	putative cation:proton antiport protein; Provision	94.64
PRK09496	453	trkA potassium transporter peripheral membrane com	94.6
PLN03129	581	NADP-dependent malic enzyme; Provisional	94.58
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.53
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.5
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.48
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.47
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	94.44
PRK13529	563	malate dehydrogenase; Provisional	94.39
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.38
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.38
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.38
PRK06392	326	homoserine dehydrogenase; Provisional	94.36
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.34
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.32
PRK06349	426	homoserine dehydrogenase; Provisional	94.31
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.26
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.26
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.25
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.23
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.12
PRK07411	390	hypothetical protein; Validated	94.08
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.07
PRK07806	248	short chain dehydrogenase; Provisional	94.07
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	94.04
PLN02586	360	probable cinnamyl alcohol dehydrogenase	94.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.0
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	93.95
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.93
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.91
PRK04148	134	hypothetical protein; Provisional	93.87
PRK08300	302	acetaldehyde dehydrogenase; Validated	93.84
COG2344	211	AT-rich DNA-binding protein [General function pred	93.8
PRK15076	431	alpha-galactosidase; Provisional	93.8
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.79
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.69
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.66
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.66
PRK14804	311	ornithine carbamoyltransferase; Provisional	93.65
PTZ00317	559	NADP-dependent malic enzyme; Provisional	93.53
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.53
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.48
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.45
PRK08192	338	aspartate carbamoyltransferase; Provisional	93.45
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	93.44
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	93.44
PLN00106	323	malate dehydrogenase	93.28
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	93.28
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.21
PTZ00325	321	malate dehydrogenase; Provisional	93.15
PRK14851	679	hypothetical protein; Provisional	93.13
CHL00194	317	ycf39 Ycf39; Provisional	93.07
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	93.07
PRK14852	989	hypothetical protein; Provisional	93.06
COG0673	342	MviM Predicted dehydrogenases and related proteins	93.06
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.06
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.99
PRK08328	231	hypothetical protein; Provisional	92.91
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.9
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	92.82
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	92.8
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	92.76
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	92.67
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	92.66
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.66
PRK05442	326	malate dehydrogenase; Provisional	92.65
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.62
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.47
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	92.4
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	92.39
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	92.38
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	92.28
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	92.27
PRK10206	344	putative oxidoreductase; Provisional	92.25
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	92.24
PRK07877	722	hypothetical protein; Provisional	92.23
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	92.2
PLN03209	576	translocon at the inner envelope of chloroplast su	92.18
PLN02214	342	cinnamoyl-CoA reductase	92.14
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.09
PRK08374	336	homoserine dehydrogenase; Provisional	92.03
PLN02178	375	cinnamyl-alcohol dehydrogenase	92.01
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	91.98
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	91.89
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	91.84
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	91.8
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	91.74
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	91.7
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	91.67
PRK12937	245	short chain dehydrogenase; Provisional	91.65
PRK06523	260	short chain dehydrogenase; Provisional	91.64
PRK10537	393	voltage-gated potassium channel; Provisional	91.62
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	91.59
PRK06153	393	hypothetical protein; Provisional	91.59
PLN02383	344	aspartate semialdehyde dehydrogenase	91.58
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	91.56
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	91.46
PLN00112	444	malate dehydrogenase (NADP); Provisional	91.46
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	91.39
PLN02514	357	cinnamyl-alcohol dehydrogenase	91.39
COG2910	211	Putative NADH-flavin reductase [General function p	91.38
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	91.35
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	91.34
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	91.34
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	91.33
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	91.27
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	91.2
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	91.15
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	91.14
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.14
PLN02695	370	GDP-D-mannose-3',5'-epimerase	91.07
PRK05884	223	short chain dehydrogenase; Provisional	91.06
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	91.04
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	91.01
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	90.94
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	90.9
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	90.86
PRK08324	681	short chain dehydrogenase; Validated	90.84
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	90.79
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	90.77
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.74
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	90.71
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	90.67
PLN02427	386	UDP-apiose/xylose synthase	90.57
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	90.46
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.43
PRK12367	245	short chain dehydrogenase; Provisional	90.38
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	90.35
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.32
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	90.31
PRK08265	261	short chain dehydrogenase; Provisional	90.28
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	90.23
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	90.2
PRK06398	258	aldose dehydrogenase; Validated	90.2
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	90.08
PRK08628	258	short chain dehydrogenase; Provisional	90.05
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	89.92
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	89.9
PLN02896	353	cinnamyl-alcohol dehydrogenase	89.82
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	89.78
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.61
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	89.37
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	89.34
PRK12939	250	short chain dehydrogenase; Provisional	89.34
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	89.33
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	89.29
PRK05865	854	hypothetical protein; Provisional	89.28
PRK07523	255	gluconate 5-dehydrogenase; Provisional	89.22
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	89.21
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	89.21
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	89.19
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	89.19
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	89.17
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	89.14
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	89.11
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	89.03
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	89.02
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	89.0
PRK06196	315	oxidoreductase; Provisional	88.94
PRK06128	300	oxidoreductase; Provisional	88.94

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=9.2e-74  Score=537.12  Aligned_cols=311  Identities=34%  Similarity=0.511  Sum_probs=277.7

Q ss_pred             CCcEEEEeCCCChhHHHHHHhcCeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      |+|||++++++.+...+.|++.+++..+... +...+.+.+.+.++|++++. ..++++++++++|+||+|+++|+|+|+
T Consensus         1 ~~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d~   79 (323)
T PRK15409          1 MKPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYDN   79 (323)
T ss_pred             CCceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceeccc
Confidence            5789999999988888888887777543221 22334455668899998875 458999999999999999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccC--cccccccccCCeEEEEecChhHHH
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG--EFKMTTKFTGKSVGILGMGRIGTA  162 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~vgIiG~G~iG~~  162 (317)
                      ||+++|+++||.|+|+||+++++||||++++||+++|++.++++.+++|.|...  ....+.+|+|+|+||||+|+||+.
T Consensus        80 id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~  159 (323)
T PRK15409         80 FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMA  159 (323)
T ss_pred             ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHH
Confidence            999999999999999999999999999999999999999999999999999732  112478999999999999999999


Q ss_pred             HHHHHh-hCCCEEEEeCCCCCCCC--C-ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          163 IAKRAE-AFDCIIGYNSRTEKPNL--N-YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       163 ~a~~l~-~~G~~V~~~~~~~~~~~--~-~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      +|++++ +|||+|.+|++......  . .....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus       160 va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~  239 (323)
T PRK15409        160 LAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP  239 (323)
T ss_pred             HHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence            999998 99999999998753321  1 1234689999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          239 LVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       239 ~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      +||++||+++|++|+|+||+||||++||++. +|||++|||++|||+||.|.+++.++...+++||.+|++|+++.+.|+
T Consensus       240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  319 (323)
T PRK15409        240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN  319 (323)
T ss_pred             ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999999999999865 589999999999999999999999999999999999999999988775

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=8.5e-74  Score=535.75  Aligned_cols=306  Identities=31%  Similarity=0.468  Sum_probs=275.8

Q ss_pred             CCcEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   85 (317)
                      ++++++.++++.++.++.+.+...+.........++.+.+.++++|++++ +.+++++++++.+|+||+|+++|+|+|||
T Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~i   80 (324)
T COG0111           2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNI   80 (324)
T ss_pred             CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEcccccccc
Confidence            67899999999999998887652222211122234455667889999888 77899999999999999999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHH
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAK  165 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~  165 (317)
                      |+++++++||.|+|+|+.|+.+||||+++++|+++|+++.+++.+++|.|.+.. ..+.+|+||||||||+|+||+.+|+
T Consensus        81 d~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~-~~g~el~gkTvGIiG~G~IG~~va~  159 (324)
T COG0111          81 DLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKA-FRGTELAGKTVGIIGLGRIGRAVAK  159 (324)
T ss_pred             CHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccc-cccccccCCEEEEECCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998632 3467999999999999999999999


Q ss_pred             HHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          166 RAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       166 ~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      ++++|||+|++||+.....    .+.....+|++++++||+|++|+|+|++|+||||++.|++||+|++|||+|||++||
T Consensus       160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd  239 (324)
T COG0111         160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD  239 (324)
T ss_pred             HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence            9999999999999954332    223446789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEeeCCCCCCCCCc-ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 042102          242 EHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL  313 (317)
Q Consensus       242 ~~aL~~al~~g~i~ga~lDV~~~EP~~~~-~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  313 (317)
                      ++||++||++|+|+||+||||++||++++ |||++|||++|||+||+|.|+++++...+++|+.+|++|+++.
T Consensus       240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~  312 (324)
T COG0111         240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVV  312 (324)
T ss_pred             HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999885 9999999999999999999999999999999999999999853

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=9e-73  Score=528.43  Aligned_cols=310  Identities=39%  Similarity=0.624  Sum_probs=281.5

Q ss_pred             CCcEEEEeCCCChhHHHHHHhcCeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      +|++++.+..+.+...+++.+.|++..+... .... .+.+.++++|++++....++++++++++|+||+|+..|+||||
T Consensus         1 mk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~   79 (324)
T COG1052           1 MKIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDN   79 (324)
T ss_pred             CCcEEEecCcCCHHHHHHhhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCc
Confidence            5788999999999999999988887765432 2122 5566788999999887889999999999999999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc---ccccccccCCeEEEEecChhHH
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE---FKMTTKFTGKSVGILGMGRIGT  161 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~---~~~~~~l~g~~vgIiG~G~iG~  161 (317)
                      ||+++|+++||.|+|+|++++++||||++++||++.|++.++++.+++|.|....   ...+++++|||+||||+|+||+
T Consensus        80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~  159 (324)
T COG1052          80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQ  159 (324)
T ss_pred             ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHH
Confidence            9999999999999999999999999999999999999999999999999998542   2457899999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          162 AIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       162 ~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ++|+++++|||+|.||++++.+.    .++.+ .+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||
T Consensus       160 avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y-~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG  238 (324)
T COG1052         160 AVARRLKGFGMKVLYYDRSPNPEAEKELGARY-VDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARG  238 (324)
T ss_pred             HHHHHHhcCCCEEEEECCCCChHHHhhcCcee-ccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCc
Confidence            99999999999999999987522    22333 44999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHhCCceEEEeeCCCCCCCC-CcccCCCCc---eEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 042102          238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDV-PEELIGLEN---VVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL  313 (317)
Q Consensus       238 ~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~-~~~L~~~pn---vi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  313 (317)
                      ++||++||++||++|+|+||++|||+.||.+ +++|++++|   |++|||+|+.|.+++.+|++.+++|+.+|++|+++.
T Consensus       239 ~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~  318 (324)
T COG1052         239 GLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPP  318 (324)
T ss_pred             cccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999986 567777766   999999999999999999999999999999999999


Q ss_pred             CCCC
Q 042102          314 TPVV  317 (317)
Q Consensus       314 ~~v~  317 (317)
                      ++|+
T Consensus       319 ~~v~  322 (324)
T COG1052         319 NEVN  322 (324)
T ss_pred             CCCC
Confidence            8875

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=2.4e-71  Score=519.03  Aligned_cols=300  Identities=27%  Similarity=0.427  Sum_probs=263.9

Q ss_pred             cEEEEeCC--CChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102            8 IIVLMVCP--VSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         8 ~~vl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   85 (317)
                      |||+++++  +.+...+.|++.+++..+. .. .++.+.+.+.++|+++++ ..++++++++++|+||+|+++|+|+|+|
T Consensus         1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   77 (311)
T PRK08410          1 MKIVILDAKTLGDKDLSVFEEFGDFQIYP-TT-SPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNV   77 (311)
T ss_pred             CeEEEEecCCCChhhHHHHhhCceEEEeC-CC-CHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccc
Confidence            36887776  4556667787766665432 22 234455668899998875 5689999999999999999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-----cccccccCCeEEEEecChhH
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-----KMTTKFTGKSVGILGMGRIG  160 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgIiG~G~iG  160 (317)
                      |+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|.....     ..+++|+||||||||+|+||
T Consensus        78 d~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG  157 (311)
T PRK08410         78 DIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIG  157 (311)
T ss_pred             cHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHH
Confidence            9999999999999999999999999999999999999999999999999974221     12468999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          161 TAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       161 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      +.+|+++++|||+|++||++...........++++++++||+|++|+|+|++|+|+||++.|++||||++|||+|||++|
T Consensus       158 ~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vV  237 (311)
T PRK08410        158 KRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIV  237 (311)
T ss_pred             HHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcccc
Confidence            99999999999999999987543222223568999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEeeCCCCCCCCCc-ccCCC---CceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102          241 DEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGL---ENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP  311 (317)
Q Consensus       241 d~~aL~~al~~g~i~ga~lDV~~~EP~~~~-~L~~~---pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  311 (317)
                      |++||+++|++|+|+ |+||||++||++++ |||++   |||++|||+||+|.+++.++.+.+++|+.+|++|++
T Consensus       238 De~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        238 NEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             CHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999 99999999998764 89986   899999999999999999999999999999999863

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=2.7e-71  Score=523.20  Aligned_cols=312  Identities=39%  Similarity=0.580  Sum_probs=279.1

Q ss_pred             CCcEEEEeCCCChhHHHHHHhcCeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      |||||++++++.++..+.|++.+++..+... ...++.+.+.+.++|+++++...++++++++++|+||||+++|+|+|+
T Consensus         1 ~~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~   80 (333)
T PRK13243          1 MKPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDN   80 (333)
T ss_pred             CCceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccccc
Confidence            5789999998888888888877766543221 113444566788999998876678999999999999999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc------ccccccccCCeEEEEecCh
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE------FKMTTKFTGKSVGILGMGR  158 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~------~~~~~~l~g~~vgIiG~G~  158 (317)
                      ||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+..      ...+.+|+|+||||||+|.
T Consensus        81 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~  160 (333)
T PRK13243         81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGR  160 (333)
T ss_pred             cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCH
Confidence            9999999999999999999999999999999999999999999999999997421      1246799999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCCC---ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          159 IGTAIAKRAEAFDCIIGYNSRTEKPNLN---YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       159 iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ||+.+|++|++|||+|.+|+++......   .....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|
T Consensus       161 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a  240 (333)
T PRK13243        161 IGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA  240 (333)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence            9999999999999999999987643211   1124589999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102          236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTP  315 (317)
Q Consensus       236 rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  315 (317)
                      ||++||+++|+++|++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++.+.+++||.+|++|+++.|.
T Consensus       241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~  320 (333)
T PRK13243        241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTL  320 (333)
T ss_pred             CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999999999999999999999877999999999999999999999999999999999999999999887


Q ss_pred             CC
Q 042102          316 VV  317 (317)
Q Consensus       316 v~  317 (317)
                      |+
T Consensus       321 v~  322 (333)
T PRK13243        321 VN  322 (333)
T ss_pred             cC
Confidence            74

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-70  Score=528.63  Aligned_cols=312  Identities=26%  Similarity=0.389  Sum_probs=279.2

Q ss_pred             CCCCcEEEEeCCCChhHHHHHHhc-C-eEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCC
Q 042102            4 NSNNIIVLMVCPVSNYLEQEIEKS-F-KVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVG   81 (317)
Q Consensus         4 ~~~~~~vl~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G   81 (317)
                      ++++|||++++++.+...+.|++. + ++..+. ....++.+.+.++++|++++++..++++++++++|+||||+++|+|
T Consensus         7 ~~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G   85 (409)
T PRK11790          7 PKDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHK-GALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIG   85 (409)
T ss_pred             CCCCeEEEEECCCCHHHHHHHHhcCCceEEECC-CCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECcee
Confidence            346789999998888888888764 5 554432 2223444566788999987776678999999999999999999999


Q ss_pred             CCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHH
Q 042102           82 LDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGT  161 (317)
Q Consensus        82 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~  161 (317)
                      +||||+++|+++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|.+.. ..+.+|.||||||||+|+||+
T Consensus        86 ~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~L~gktvGIiG~G~IG~  164 (409)
T PRK11790         86 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA-AGSFEVRGKTLGIVGYGHIGT  164 (409)
T ss_pred             cccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc-cCcccCCCCEEEEECCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999998532 346899999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCC-CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          162 AIAKRAEAFDCIIGYNSRTEKPNL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       162 ~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      .+|+++++|||+|++||++..... +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++|
T Consensus       165 ~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v  244 (409)
T PRK11790        165 QLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVV  244 (409)
T ss_pred             HHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCccc
Confidence            999999999999999998654322 2334568999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEeeCCCCCCCCC-----cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102          241 DEHELVSALLQGRLGGAGLDVFEHEPDVP-----EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTP  315 (317)
Q Consensus       241 d~~aL~~al~~g~i~ga~lDV~~~EP~~~-----~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  315 (317)
                      |++||+++|++|+|+||+||||++||++.     +|||++|||++|||+||+|.++++++...+++|+.+|++|+++.+.
T Consensus       245 de~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~  324 (409)
T PRK11790        245 DIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSA  324 (409)
T ss_pred             CHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence            99999999999999999999999999875     4899999999999999999999999999999999999999999887


Q ss_pred             CC
Q 042102          316 VV  317 (317)
Q Consensus       316 v~  317 (317)
                      ||
T Consensus       325 vn  326 (409)
T PRK11790        325 VN  326 (409)
T ss_pred             ee
Confidence            75

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-70  Score=512.53  Aligned_cols=303  Identities=28%  Similarity=0.470  Sum_probs=262.5

Q ss_pred             EEEEeCCC----ChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            9 IVLMVCPV----SNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         9 ~vl~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      ||++++..    .+...+.|++.+..+...... .++.+.+.+.++|+++++ ..++++++++++|+||||+++|+|+|+
T Consensus         2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~   79 (317)
T PRK06487          2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDAT-TPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNN   79 (317)
T ss_pred             eEEEEccccCCccccchhHHHhhCCeEEEecCC-CHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCccccc
Confidence            57777642    234456666554333222222 334456678899988764 567999999999999999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-----cccccccCCeEEEEecChh
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-----KMTTKFTGKSVGILGMGRI  159 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgIiG~G~i  159 (317)
                      ||+++|+++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|.....     ..+.+|+||||||||+|+|
T Consensus        80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I  159 (317)
T PRK06487         80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL  159 (317)
T ss_pred             cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence            99999999999999999999999999999999999999999999999999974211     1246899999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102          160 GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       160 G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      |+.+|+++++|||+|++|+++....  .....++++++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++
T Consensus       160 G~~vA~~l~~fgm~V~~~~~~~~~~--~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v  237 (317)
T PRK06487        160 GGAVARLAEAFGMRVLIGQLPGRPA--RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL  237 (317)
T ss_pred             HHHHHHHHhhCCCEEEEECCCCCcc--cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence            9999999999999999999864322  12345899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCC--CCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q 042102          240 VDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIG--LENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV  316 (317)
Q Consensus       240 vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~--~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  316 (317)
                      ||++||+++|++|+|+||+||||++||+++ +|||+  +|||++|||+||+|.++++++...+++||.+|++|+++ +.|
T Consensus       238 Vde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v  316 (317)
T PRK06487        238 VDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL-RVV  316 (317)
T ss_pred             cCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCC
Confidence            999999999999999999999999999876 48995  89999999999999999999999999999999999865 444

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.4e-69  Score=518.34  Aligned_cols=315  Identities=28%  Similarity=0.399  Sum_probs=276.5

Q ss_pred             CCCCCcEEEEeCCCChh-HHHHHHhc-CeEEEecC-C-CChHHHHhhcc-CCceEEEEeCCCCCCHHHHhcCCC--ceEE
Q 042102            3 NNSNNIIVLMVCPVSNY-LEQEIEKS-FKVFKLWH-F-EDKEQFINTHK-DSIQAVVGSAAAGADAELIESLPK--LEIV   75 (317)
Q Consensus         3 ~~~~~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~-~-~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~l~~~~~--Lk~i   75 (317)
                      |+..|++|+++.++.++ ..+.|.+. +++..+.. . ...++.+.+.+ .++|+++++...++++++++++|+  ||+|
T Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I   90 (386)
T PLN02306         11 NPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF   90 (386)
T ss_pred             CCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence            56679999999998774 67778764 66654321 1 12344455555 569998887667899999999996  6999


Q ss_pred             EECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCcc-Cc-ccccccccCCeEEE
Q 042102           76 ATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKK-GE-FKMTTKFTGKSVGI  153 (317)
Q Consensus        76 ~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~-~~-~~~~~~l~g~~vgI  153 (317)
                      +++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|.. .. ...+.+++|+||||
T Consensus        91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGI  170 (386)
T PLN02306         91 SNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGV  170 (386)
T ss_pred             EECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999998852 11 12467899999999


Q ss_pred             EecChhHHHHHHHHh-hCCCEEEEeCCCCCCCC-------C------------ccccCCHHHhcccCCEEEEeccCChhh
Q 042102          154 LGMGRIGTAIAKRAE-AFDCIIGYNSRTEKPNL-------N------------YKYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       154 iG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~-------~------------~~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      ||+|.||+.+|++++ +|||+|++||++.....       +            .....++++++++||+|++|+|+|++|
T Consensus       171 iG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T  250 (386)
T PLN02306        171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTT  250 (386)
T ss_pred             ECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhh
Confidence            999999999999985 99999999998753210       0            112358999999999999999999999


Q ss_pred             hccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHH
Q 042102          214 QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRK  293 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~  293 (317)
                      +|||+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||+++++||++|||++|||+||+|.++++
T Consensus       251 ~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~~~  330 (386)
T PLN02306        251 YHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTRE  330 (386)
T ss_pred             hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999877799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          294 AMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       294 ~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      ++.+.+++|+.+|++|+++.|.|+
T Consensus       331 ~~~~~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        331 GMATLAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             HHHHHHHHHHHHHHcCCCCccccc
Confidence            999999999999999999988875

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.9e-69  Score=503.84  Aligned_cols=270  Identities=27%  Similarity=0.453  Sum_probs=244.8

Q ss_pred             HHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHH
Q 042102           40 EQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAV  119 (317)
Q Consensus        40 ~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~  119 (317)
                      ++.+.+.++++|++++ +..++++++++++|+||+|+++|+|+|+||+++|.++||.|+|+||+++.+||||++++||++
T Consensus        35 ~~~~~~~~~~~d~ii~-~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~  113 (314)
T PRK06932         35 AEQTIERAKDADIVIT-SKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL  113 (314)
T ss_pred             hHHHHHHhCCCcEEEE-eCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHH
Confidence            3444566789998776 456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhHHHHHHHcCCCccCcc-----cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHH
Q 042102          120 LRRICESDRYVRSGEWKKGEF-----KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLI  194 (317)
Q Consensus       120 ~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~  194 (317)
                      +|++..+++.+++|.|.....     ..+.+|+|+||||||+|.||+.+|+++++|||+|++|++....... ....+++
T Consensus       114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~  192 (314)
T PRK06932        114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFE  192 (314)
T ss_pred             HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHH
Confidence            999999999999999973211     1246899999999999999999999999999999999976432211 1246899


Q ss_pred             HhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccC
Q 042102          195 DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELI  273 (317)
Q Consensus       195 el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~  273 (317)
                      +++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+++ +|||
T Consensus       193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~  272 (314)
T PRK06932        193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLI  272 (314)
T ss_pred             HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999875 4888


Q ss_pred             ----CCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102          274 ----GLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP  311 (317)
Q Consensus       274 ----~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  311 (317)
                          ++|||++|||+||+|.++++++.+.+++||.+|++|++
T Consensus       273 ~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        273 QAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             HhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence                59999999999999999999999999999999998763

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=5.3e-68  Score=502.87  Aligned_cols=304  Identities=26%  Similarity=0.387  Sum_probs=265.9

Q ss_pred             CCCcEEEEeCCCChhH----HHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCC
Q 042102            5 SNNIIVLMVCPVSNYL----EQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSV   80 (317)
Q Consensus         5 ~~~~~vl~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~   80 (317)
                      ++|||||++.+..+..    .+.+ +.+++..+.. . ..+++.+.++++|+++++ ..++++++++.+|+||||+++++
T Consensus        16 ~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~   91 (347)
T PLN02928         16 MRPTRVLFCGPEFPASYSYTREYL-QKYPFIQVDA-V-AREDVPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGV   91 (347)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHh-hcCCeeEecC-C-CHHHHHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCc
Confidence            5689999998777653    2333 3344443322 2 233355668899988764 56799999999999999999999


Q ss_pred             CCCcCChhhHhhCCcEEEeCCCC---CcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecC
Q 042102           81 GLDKIDLARCKEKGIRVANTPDV---LTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMG  157 (317)
Q Consensus        81 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G  157 (317)
                      |+|++|++++.++||.|+|+|++   ++.+||||+++++|+++|++..+++.++++.|..   +.+.+|+|+|+||||+|
T Consensus        92 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~gktvGIiG~G  168 (347)
T PLN02928         92 GLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE---PIGDTLFGKTVFILGYG  168 (347)
T ss_pred             ccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc---ccccCCCCCEEEEECCC
Confidence            99999999999999999999985   7899999999999999999999999999999964   34678999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCCC----------------ccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          158 RIGTAIAKRAEAFDCIIGYNSRTEKPNLN----------------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       158 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------------~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      .||+.+|++|++|||+|++|+++......                .....++++++++||+|++|+|+|++|+++|+++.
T Consensus       169 ~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~  248 (347)
T PLN02928        169 AIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEF  248 (347)
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHH
Confidence            99999999999999999999987432110                01346899999999999999999999999999999


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVV  300 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~  300 (317)
                      |++||+|++|||+|||++||++||+++|++|+|+||+||||++||+++ +|||++|||++|||+||+|.++++++.+.++
T Consensus       249 l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~  328 (347)
T PLN02928        249 LSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG  328 (347)
T ss_pred             HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875 4899999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCC
Q 042102          301 GNLQAHFGKKPLLTP  315 (317)
Q Consensus       301 ~nl~~~~~g~~~~~~  315 (317)
                      +|+.+|++|+++.+.
T Consensus       329 ~nl~~~~~g~~~~~~  343 (347)
T PLN02928        329 DAALQLHAGRPLTGI  343 (347)
T ss_pred             HHHHHHHCCCCCCce
Confidence            999999999988653

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=7.9e-68  Score=504.86  Aligned_cols=294  Identities=25%  Similarity=0.388  Sum_probs=260.9

Q ss_pred             HHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeC--CCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcE
Q 042102           20 LEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSA--AAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIR   96 (317)
Q Consensus        20 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~   96 (317)
                      +++.|++. ++++...+.+..++.+.+.++++|++++..  ..++++++++++|+||||+++|+|+||||+++|.++||.
T Consensus        67 ~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~  146 (386)
T PLN03139         67 IRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLT  146 (386)
T ss_pred             HHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeE
Confidence            55667665 555543332223455567789999988753  246999999999999999999999999999999999999


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc-ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEE
Q 042102           97 VANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG  175 (317)
Q Consensus        97 v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~  175 (317)
                      |+|++|+++.+||||++++||++.|++.++++.+++|.|.... ...+++|.|+||||||+|+||+.+|++|++|||+|.
T Consensus       147 V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~  226 (386)
T PLN03139        147 VAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLL  226 (386)
T ss_pred             EEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEE
Confidence            9999999999999999999999999999999999999997422 124679999999999999999999999999999999


Q ss_pred             EeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          176 YNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       176 ~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      +||++..+.     .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||+++|+++|+
T Consensus       227 ~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~  306 (386)
T PLN03139        227 YHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS  306 (386)
T ss_pred             EECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence            999875322     223344689999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 042102          251 QGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL  313 (317)
Q Consensus       251 ~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  313 (317)
                      +|+|+||++|||++||++. +|||.+|||++|||+||.|.+++.++++.+++||.+|++|+++.
T Consensus       307 sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~  370 (386)
T PLN03139        307 SGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFP  370 (386)
T ss_pred             cCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9999999999999999876 48999999999999999999999999999999999999999653

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=6.7e-68  Score=505.68  Aligned_cols=295  Identities=26%  Similarity=0.434  Sum_probs=262.7

Q ss_pred             HHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeC--CCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEE
Q 042102           21 EQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSA--AAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV   97 (317)
Q Consensus        21 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v   97 (317)
                      ++.|++. ++++...+.+..++.+.+.++++|++++++  ..++++++++++|+||||+++|+|+||||+++|+++||.|
T Consensus        61 ~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V  140 (385)
T PRK07574         61 RKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITV  140 (385)
T ss_pred             HHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEE
Confidence            3556655 566543322223455567789999998753  3579999999999999999999999999999999999999


Q ss_pred             EeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEE
Q 042102           98 ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY  176 (317)
Q Consensus        98 ~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~  176 (317)
                      +|++++++.+||||++++||+++|++.++++.+++|.|..... ..+++|+|+||||||+|+||+.+|++|++|||+|.+
T Consensus       141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~  220 (385)
T PRK07574        141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY  220 (385)
T ss_pred             EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            9999999999999999999999999999999999999984321 246789999999999999999999999999999999


Q ss_pred             eCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          177 NSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       177 ~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      ||++..+.     .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||+++|+++|++
T Consensus       221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  300 (385)
T PRK07574        221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES  300 (385)
T ss_pred             ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence            99876321     2233457899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102          252 GRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTP  315 (317)
Q Consensus       252 g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  315 (317)
                      |+|+||+||||++||++. +|||++|||++|||+||+|.++++++.+.+++||++|++|+++.|+
T Consensus       301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~  365 (385)
T PRK07574        301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE  365 (385)
T ss_pred             CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999876 4999999999999999999999999999999999999999999775

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=1.7e-67  Score=524.22  Aligned_cols=306  Identities=29%  Similarity=0.442  Sum_probs=275.8

Q ss_pred             EEEEeCCCChhHHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCCh
Q 042102            9 IVLMVCPVSNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDL   87 (317)
Q Consensus         9 ~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   87 (317)
                      ||++++++.+...+.|++. +++... ... .++.+.+.++++|++++++.+++++++++++|+||||+++|+|+||||+
T Consensus         1 ~vli~~~~~~~~~~~l~~~~~~~~~~-~~~-~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~   78 (525)
T TIGR01327         1 KVLIADPISPDGIDILEDVGVEVDVQ-TGL-SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDI   78 (525)
T ss_pred             CEEEeCCCCHHHHHHHHhcCcEEEeC-CCC-CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcH
Confidence            5899999888888888765 555532 212 2344566788999998877778999999999999999999999999999


Q ss_pred             hhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH
Q 042102           88 ARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA  167 (317)
Q Consensus        88 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l  167 (317)
                      ++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+.. ..+.+|+||||||||+|.||+.+|++|
T Consensus        79 ~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~-~~g~~l~gktvgIiG~G~IG~~vA~~l  157 (525)
T TIGR01327        79 EAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKA-FMGTELYGKTLGVIGLGRIGSIVAKRA  157 (525)
T ss_pred             HHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccc-cCccccCCCEEEEECCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998532 357899999999999999999999999


Q ss_pred             hhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102          168 EAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       168 ~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ++|||+|++||++....    .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++
T Consensus       158 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~  237 (525)
T TIGR01327       158 KAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEA  237 (525)
T ss_pred             HhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHH
Confidence            99999999999863321    22333458999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          244 ELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       244 aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      ||+++|++|+|+||+||||++||++++|||++|||++|||+||+|.+++.+++..+++|+.+|++|+++.+.|+
T Consensus       238 aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  311 (525)
T TIGR01327       238 ALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVN  311 (525)
T ss_pred             HHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceee
Confidence            99999999999999999999999877799999999999999999999999999999999999999999988774

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-67  Score=522.05  Aligned_cols=306  Identities=28%  Similarity=0.444  Sum_probs=275.7

Q ss_pred             cEEEEeCCCChhHHHHHHhc--CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102            8 IIVLMVCPVSNYLEQEIEKS--FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   85 (317)
                      |||++++++.+...+.|++.  +++... ... .++.+.+.++++|++++++.+++++++++++|+||||+++|+|+|||
T Consensus         1 m~ili~~~~~~~~~~~l~~~~~~~v~~~-~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (526)
T PRK13581          1 MKVLVSDPISPAGLEILKDAPGVEVDVK-TGL-DKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNV   78 (526)
T ss_pred             CeEEEeCCCCHHHHHHHhccCCeEEEeC-CCC-CHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccc
Confidence            47999999888888888775  455432 112 23445667889999988777789999999999999999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHH
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAK  165 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~  165 (317)
                      |+++|+++||.|+|+|++++.+||||++++||+++|+++++++.+++|.|.+.. ..+.+|+||||||||+|.||+.+|+
T Consensus        79 d~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~-~~g~~l~gktvgIiG~G~IG~~vA~  157 (526)
T PRK13581         79 DVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKK-FMGVELYGKTLGIIGLGRIGSEVAK  157 (526)
T ss_pred             cHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccC-ccccccCCCEEEEECCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997532 3578899999999999999999999


Q ss_pred             HHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          166 RAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       166 ~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      ++++|||+|++||++....    .+... .++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||
T Consensus       158 ~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd  236 (526)
T PRK13581        158 RAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIID  236 (526)
T ss_pred             HHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeC
Confidence            9999999999999864321    12222 389999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          242 EHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       242 ~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      +++|+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+++.++.+.+++|+.+|++|+++.|.|+
T Consensus       237 e~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  312 (526)
T PRK13581        237 EAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVN  312 (526)
T ss_pred             HHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceee
Confidence            9999999999999999999999999887799999999999999999999999999999999999999999988874

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-67  Score=477.05  Aligned_cols=298  Identities=26%  Similarity=0.421  Sum_probs=273.4

Q ss_pred             EEEEeCCCChhHHHHHHhcC-eEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHh-cCCCceEEEECCCCCCcCC
Q 042102            9 IVLMVCPVSNYLEQEIEKSF-KVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIE-SLPKLEIVATCSVGLDKID   86 (317)
Q Consensus         9 ~vl~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~-~~~~Lk~i~~~~~G~d~id   86 (317)
                      +||+++++.+.-.+.|++.+ ++...++.. .+ ++.+.++++|++++++.+++++++|+ ...+||+|+++++|+||+|
T Consensus         8 ~il~~e~~~~~~~~~l~~~g~~v~~~~~~~-~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD   85 (406)
T KOG0068|consen    8 KILVAESLDQACIEILKDNGYQVEFKKNLS-LE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD   85 (406)
T ss_pred             eEEEecccchHHHHHHHhcCceEEEeccCC-HH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence            79999999999999999986 565544433 33 56677899999999999999999999 5568999999999999999


Q ss_pred             hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHH
Q 042102           87 LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKR  166 (317)
Q Consensus        87 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~  166 (317)
                      ++++.++||.|.|+|.+|+.++||+++++++++.|++++....+++|.|.+..+ +|.+++|||+||+|+|+||+.+|++
T Consensus        86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~-~G~el~GKTLgvlG~GrIGseVA~r  164 (406)
T KOG0068|consen   86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKY-LGWELRGKTLGVLGLGRIGSEVAVR  164 (406)
T ss_pred             hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecce-eeeEEeccEEEEeecccchHHHHHH
Confidence            999999999999999999999999999999999999999999999999996543 7899999999999999999999999


Q ss_pred             HhhCCCEEEEeCCCCCCCC-Cc--cccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102          167 AEAFDCIIGYNSRTEKPNL-NY--KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       167 l~~~G~~V~~~~~~~~~~~-~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ++++||+|++||+...... ..  ....+++|+++.||+|++|+|++|+|++++|.+.|++||+|..+||++||.+||++
T Consensus       165 ~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~  244 (406)
T KOG0068|consen  165 AKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP  244 (406)
T ss_pred             HHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence            9999999999987543321 11  13578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEeeCCCCCCCCC---cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCC
Q 042102          244 ELVSALLQGRLGGAGLDVFEHEPDVP---EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGK  309 (317)
Q Consensus       244 aL~~al~~g~i~ga~lDV~~~EP~~~---~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g  309 (317)
                      +|+++|++|+++||++|||+.||+..   +.|.++|||+.|||+|++|.|++.+++..+++++..|.+|
T Consensus       245 ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~  313 (406)
T KOG0068|consen  245 ALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING  313 (406)
T ss_pred             HHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999874   5899999999999999999999999999999999999998

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-65  Score=483.64  Aligned_cols=308  Identities=19%  Similarity=0.304  Sum_probs=266.0

Q ss_pred             cEEEEeCCCC--hhH-HHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCC--CceEEEECCCC
Q 042102            8 IIVLMVCPVS--NYL-EQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLP--KLEIVATCSVG   81 (317)
Q Consensus         8 ~~vl~~~~~~--~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~--~Lk~i~~~~~G   81 (317)
                      |||++.....  ..+ .+.+++. +++... ..+..++. .+.+.++|+++++...++++++++++|  +||+|++.|+|
T Consensus         2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   79 (330)
T PRK12480          2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTS-KELLSSAT-VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG   79 (330)
T ss_pred             cEEEEEeCcHHHHHHHHHHHHhcCeEEEEc-CCCCCHHH-HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccc
Confidence            7777776432  223 3344443 333331 22223343 567899999988766789999999998  89999999999


Q ss_pred             CCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHH
Q 042102           82 LDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGT  161 (317)
Q Consensus        82 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~  161 (317)
                      +|+||+++|+++||.|+|+|++++++||||+++++|+++|+++++++.+++|.|.+.....+++|+|++|||||+|.||+
T Consensus        80 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~  159 (330)
T PRK12480         80 FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGA  159 (330)
T ss_pred             cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHH
Confidence            99999999999999999999999999999999999999999999999999997643222346799999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCCCc-cccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          162 AIAKRAEAFDCIIGYNSRTEKPNLNY-KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       162 ~~a~~l~~~G~~V~~~~~~~~~~~~~-~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      .+|++|++||++|.+||+++...... ....++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||.+|
T Consensus       160 ~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~v  239 (330)
T PRK12480        160 ATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVI  239 (330)
T ss_pred             HHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcccc
Confidence            99999999999999999876543222 23458999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEeeCCCCCCCC----------C----cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHH
Q 042102          241 DEHELVSALLQGRLGGAGLDVFEHEPDV----------P----EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH  306 (317)
Q Consensus       241 d~~aL~~al~~g~i~ga~lDV~~~EP~~----------~----~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~  306 (317)
                      |+++|+++|++|+|+||+||||++||+.          +    +|||++|||++|||+|++|.++++++.+.+++|+.+|
T Consensus       240 d~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~  319 (330)
T PRK12480        240 NTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSV  319 (330)
T ss_pred             CHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999952          1    2699999999999999999999999999999999999


Q ss_pred             HCCCCCCCCCC
Q 042102          307 FGKKPLLTPVV  317 (317)
Q Consensus       307 ~~g~~~~~~v~  317 (317)
                      ++|++..++|+
T Consensus       320 ~~~~~~~~~~~  330 (330)
T PRK12480        320 INTGTCETRLN  330 (330)
T ss_pred             HhCCCCcccCC
Confidence            99999999886

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=5.3e-65  Score=480.36  Aligned_cols=311  Identities=19%  Similarity=0.252  Sum_probs=273.4

Q ss_pred             CCcEEEEeCCCChhHHHHHHhcCeEEE-ecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCC--ceEEEECCCCC
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKSFKVFK-LWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPK--LEIVATCSVGL   82 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~   82 (317)
                      +|++|+++.+......+.+.+.+.+.. .+.....++. .+.+.++|+++++..+++++++++++|+  ||+|+++|+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~   80 (332)
T PRK08605          2 TKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDN-VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGF   80 (332)
T ss_pred             cEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHH-HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEccccc
Confidence            678999999887778888776665542 2221223343 3567899999888778999999999997  99999999999


Q ss_pred             CcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHH
Q 042102           83 DKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTA  162 (317)
Q Consensus        83 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~  162 (317)
                      ||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+.....+++|+|++|||||+|.||+.
T Consensus        81 d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~  160 (332)
T PRK08605         81 DTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLA  160 (332)
T ss_pred             chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999987532222478999999999999999999


Q ss_pred             HHHHH-hhCCCEEEEeCCCCCCCC--CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102          163 IAKRA-EAFDCIIGYNSRTEKPNL--NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       163 ~a~~l-~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      +|++| ++||++|++||++.....  ......++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||.+
T Consensus       161 vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~  240 (332)
T PRK08605        161 VAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSL  240 (332)
T ss_pred             HHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcc
Confidence            99999 789999999998764321  122345899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeeCCCCCCC--CCc------------ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHH
Q 042102          240 VDEHELVSALLQGRLGGAGLDVFEHEPD--VPE------------ELIGLENVVLLPHVASATVETRKAMADLVVGNLQA  305 (317)
Q Consensus       240 vd~~aL~~al~~g~i~ga~lDV~~~EP~--~~~------------~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~  305 (317)
                      +|+++|+++|++|+|+||+||||+.||+  +.+            +||++|||++|||+||+|.++++++...+++|+.+
T Consensus       241 vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~  320 (332)
T PRK08605        241 VDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLE  320 (332)
T ss_pred             cCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999983  221            49999999999999999999999999999999999


Q ss_pred             HHCCCCCCCCCC
Q 042102          306 HFGKKPLLTPVV  317 (317)
Q Consensus       306 ~~~g~~~~~~v~  317 (317)
                      |++|++..++||
T Consensus       321 ~~~g~~~~~~~~  332 (332)
T PRK08605        321 VLQTGTTRLRVN  332 (332)
T ss_pred             HHcCCCCCCCcC
Confidence            999999999886

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=1.6e-61  Score=452.31  Aligned_cols=293  Identities=22%  Similarity=0.315  Sum_probs=247.5

Q ss_pred             cEEEEeCCC-Chh-HHHHHHhcCeEEEe--cCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCC
Q 042102            8 IIVLMVCPV-SNY-LEQEIEKSFKVFKL--WHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLD   83 (317)
Q Consensus         8 ~~vl~~~~~-~~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   83 (317)
                      |.+++..+. ... +.+.|++.++-..+  +...+        ..++|+++++..   +.+.++ .|+||||++.|+|+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~--------~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d   68 (312)
T PRK15469          1 MDIIFYHPTFDTQWWIEALRKALPQARVRAWKSGD--------NDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVD   68 (312)
T ss_pred             CEEEEeCCccCHHHHHHHHHHHCCCCeEEecCCCC--------CccCeEEEEeCC---ChHHhc-cCCceEEEEcccccc
Confidence            366777654 333 66777765442221  21111        367888887642   457776 589999999999999


Q ss_pred             cCChhh-----HhhCCcEEEeCCC-CCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecC
Q 042102           84 KIDLAR-----CKEKGIRVANTPD-VLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMG  157 (317)
Q Consensus        84 ~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G  157 (317)
                      ++|.+.     +.++||.|+|+++ .++.+||||++++||+++|++.++.+.+++|.|...   ...+++|+||||||+|
T Consensus        69 ~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~---~~~~l~g~tvgIvG~G  145 (312)
T PRK15469         69 SILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL---PEYHREDFTIGILGAG  145 (312)
T ss_pred             hhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC---CCCCcCCCEEEEECCC
Confidence            998322     4458999999864 689999999999999999999999999999999742   2457999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCCCc---cccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102          158 RIGTAIAKRAEAFDCIIGYNSRTEKPNLNY---KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       158 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~  234 (317)
                      .||+.+|++|++|||+|.+|+++.+...+.   ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+
T Consensus       146 ~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~  225 (312)
T PRK15469        146 VLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNL  225 (312)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEEC
Confidence            999999999999999999999876543222   12458999999999999999999999999999999999999999999


Q ss_pred             CCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 042102          235 GRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL  313 (317)
Q Consensus       235 ~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  313 (317)
                      |||++||+++|+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.+.  ++...+.+|+++|++|+++.
T Consensus       226 aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~  303 (312)
T PRK15469        226 ARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVC  303 (312)
T ss_pred             CCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCc
Confidence            99999999999999999999999999999999876 4899999999999999999874  68899999999999999999


Q ss_pred             CCCC
Q 042102          314 TPVV  317 (317)
Q Consensus       314 ~~v~  317 (317)
                      |.|+
T Consensus       304 ~~V~  307 (312)
T PRK15469        304 GQVD  307 (312)
T ss_pred             ccCC
Confidence            9874

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=3e-61  Score=458.08  Aligned_cols=275  Identities=23%  Similarity=0.318  Sum_probs=241.6

Q ss_pred             cEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCCh
Q 042102            8 IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDL   87 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   87 (317)
                      ||||+.+.. +...+.+++.+++.+....+...    +.+.++|++++++.+++++++++ .|+||+|+++++|+||||+
T Consensus         1 mkIl~d~~~-~~~~~~~~~~~ev~~~~~~~~~~----~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~   74 (378)
T PRK15438          1 MKILVDENM-PYARELFSRLGEVKAVPGRPIPV----AQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDE   74 (378)
T ss_pred             CEEEEeCCc-chHHHHHhhcCcEEEeCCCCCCH----HHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCH
Confidence            578888765 46656666666776543222122    23678999999888899999996 6999999999999999999


Q ss_pred             hhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH
Q 042102           88 ARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA  167 (317)
Q Consensus        88 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l  167 (317)
                      ++++++||.|+|+||+|+.+||||+++++|++.|+.                   +.+|+|+||||||+|+||+.+|++|
T Consensus        75 ~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-------------------g~~L~gktvGIIG~G~IG~~vA~~l  135 (378)
T PRK15438         75 AWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-------------------GFSLHDRTVGIVGVGNVGRRLQARL  135 (378)
T ss_pred             HHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-------------------CCCcCCCEEEEECcCHHHHHHHHHH
Confidence            999999999999999999999999999999998862                   2469999999999999999999999


Q ss_pred             hhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChh----hhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102          168 EAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       168 ~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~----t~~li~~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ++|||+|++||+............++++++++||+|++|+|+|++    |+|+|+++.|++||+|++|||+|||++||++
T Consensus       136 ~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~  215 (378)
T PRK15438        136 EALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNT  215 (378)
T ss_pred             HHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHH
Confidence            999999999997543221112356899999999999999999996    9999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHC
Q 042102          244 ELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFG  308 (317)
Q Consensus       244 aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~  308 (317)
                      ||+++|++|++.||+||||++||.++.+||..++ ++|||+||+|.++..++..++++|+.+|+.
T Consensus       216 AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~  279 (378)
T PRK15438        216 ALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG  279 (378)
T ss_pred             HHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999987778988776 999999999999999999999999999994

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.1e-61  Score=446.14  Aligned_cols=283  Identities=26%  Similarity=0.355  Sum_probs=244.1

Q ss_pred             cEEEEeCCCChhHHHHHHhc---CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            8 IIVLMVCPVSNYLEQEIEKS---FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      |++++..++.+.+.+.+.+.   ++++.   .+        ...++|++++...       +..+++||||+++|+|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~   62 (303)
T PRK06436          1 MNVYVNFPMSKKLLEICRDILDLDDVHW---YP--------DYYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDH   62 (303)
T ss_pred             CeEEEEccCCHHHHHHHHhhcccceeEe---cc--------ccCCCCEEEecCC-------cCCCCCeEEEEECCcccCc
Confidence            45677788888888876553   33332   11        1356777755432       2345899999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHH
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA  164 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a  164 (317)
                      ||+++|+++||.++|. |.++.+||||++++||+++|+++++++.+++|.|...   .+.+|+|+||||||+|.||+.+|
T Consensus        63 id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~---~~~~L~gktvgIiG~G~IG~~vA  138 (303)
T PRK06436         63 IDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS---PTKLLYNKSLGILGYGGIGRRVA  138 (303)
T ss_pred             ccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC---CCCCCCCCEEEEECcCHHHHHHH
Confidence            9999999988887775 7899999999999999999999999999999999842   35789999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCCCcc-ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102          165 KRAEAFDCIIGYNSRTEKPNLNYK-YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       165 ~~l~~~G~~V~~~~~~~~~~~~~~-~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      +++++|||+|++|+++.... +.. ...++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++
T Consensus       139 ~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~  217 (303)
T PRK06436        139 LLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKN  217 (303)
T ss_pred             HHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHH
Confidence            99999999999999875432 222 2568999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCC-CccHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q 042102          244 ELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVA-SATVETRKAMADLVVGNLQAHFGKKPLLTPV  316 (317)
Q Consensus       244 aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a-~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  316 (317)
                      +|+++|++|++.||+||||++||++++.  .+|||++|||++ +.|.++++++...+++|+.+|++|++ .|.|
T Consensus       218 aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V  288 (303)
T PRK06436        218 DMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIV  288 (303)
T ss_pred             HHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceE
Confidence            9999999999999999999999986654  789999999986 58899999999999999999999987 5655

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.6e-60  Score=454.29  Aligned_cols=278  Identities=22%  Similarity=0.373  Sum_probs=243.7

Q ss_pred             cEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCCh
Q 042102            8 IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDL   87 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   87 (317)
                      |||++.+.+ |...+.+++..++..... .   +...+.+.++|++++++.+++++++++. |+||||+++++|+||||+
T Consensus         1 mkI~~d~~~-p~~~~~~~~~~~v~~~~~-~---~~~~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~   74 (381)
T PRK00257          1 MKIVADENI-PLLDAFFAGFGEIRRLPG-R---AFDRAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDHLDL   74 (381)
T ss_pred             CEEEEecCc-hhHHHHHhhCCcEEEcCC-c---ccCHHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccccCH
Confidence            688888876 444455555455554321 1   1223346889999888888999999984 899999999999999999


Q ss_pred             hhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH
Q 042102           88 ARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA  167 (317)
Q Consensus        88 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l  167 (317)
                      ++++++||.|+|+||+|+.+||||+++++|++.|+.                   +.++.|+||||||+|+||+.+|+++
T Consensus        75 ~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-------------------g~~l~gktvGIIG~G~IG~~va~~l  135 (381)
T PRK00257         75 DYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-------------------GVDLAERTYGVVGAGHVGGRLVRVL  135 (381)
T ss_pred             HHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-------------------CCCcCcCEEEEECCCHHHHHHHHHH
Confidence            999999999999999999999999999999998751                   3579999999999999999999999


Q ss_pred             hhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCCh----hhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102          168 EAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTE----ETQHIVNRQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       168 ~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~----~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ++|||+|++||+......+.....++++++++||+|++|+|+|+    +|+++|+++.|++||+|++|||+|||++||++
T Consensus       136 ~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~  215 (381)
T PRK00257        136 RGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQ  215 (381)
T ss_pred             HHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHH
Confidence            99999999999854332222345689999999999999999999    59999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102          244 ELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP  311 (317)
Q Consensus       244 aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  311 (317)
                      ||+++|++|++.+|+||||++||.++++||+. |+++|||+||+|.++..++..++.+|+.+|+++.+
T Consensus       216 AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~  282 (381)
T PRK00257        216 ALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPA  282 (381)
T ss_pred             HHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999877789986 99999999999999999999999999999999875

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.2e-60  Score=442.41  Aligned_cols=268  Identities=49%  Similarity=0.839  Sum_probs=244.8

Q ss_pred             ceEEEEeCCCCCCHHHHhcC-CCceEEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHH
Q 042102           50 IQAVVGSAAAGADAELIESL-PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDR  128 (317)
Q Consensus        50 ~~~ii~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~  128 (317)
                      ..++.+......+.+.+... |+||+|+++|+|+||||+++|++|||+|+|+|+.+.++|||++++++|.++|++..+++
T Consensus        62 ~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~  141 (336)
T KOG0069|consen   62 RIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNE  141 (336)
T ss_pred             eeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhh
Confidence            34444444566778887765 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCc-cCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC-c---cccCCHHHhcccCCEE
Q 042102          129 YVRSGEWK-KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN-Y---KYYPNLIDLASNCQIL  203 (317)
Q Consensus       129 ~~~~~~w~-~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-~---~~~~~l~el~~~aDvV  203 (317)
                      .+++|.|. ...++.+..+.||||||+|+|+||+.+|++|++||+.+.|++|++..... .   ....++++++++||+|
T Consensus       142 ~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~i  221 (336)
T KOG0069|consen  142 MVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVI  221 (336)
T ss_pred             hhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEE
Confidence            99999994 23345688999999999999999999999999999889999987664322 1   2245899999999999


Q ss_pred             EEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEccc
Q 042102          204 VVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPH  283 (317)
Q Consensus       204 ~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH  283 (317)
                      ++|||+|++|+|+||++.|.+||+|+++||++||.++|+++++++|++|+|.+++||||++||.++++|+.++|+++|||
T Consensus       222 vv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PH  301 (336)
T KOG0069|consen  222 VVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPH  301 (336)
T ss_pred             EEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999977789999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          284 VASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       284 ~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      +|+.|.+.+++|+..++.|+.+++.|+++.+++.
T Consensus       302 igs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~  335 (336)
T KOG0069|consen  302 IGSATLETREKMAEIVLNNLLAFFSGKPLLTPVL  335 (336)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence            9999999999999999999999999999988763

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=2.2e-48  Score=336.85  Aligned_cols=173  Identities=41%  Similarity=0.631  Sum_probs=152.0

Q ss_pred             HHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Ccc
Q 042102          113 IGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NYK  188 (317)
Q Consensus       113 l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~  188 (317)
                      +++||++.|+++++++.++++.|.......+++++|+||||||+|.||+.+|+++++|||+|++|+++.....    ...
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            5899999999999999999999932223457899999999999999999999999999999999999886532    112


Q ss_pred             ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC
Q 042102          189 YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV  268 (317)
Q Consensus       189 ~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~  268 (317)
                      ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||++
T Consensus        81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~  160 (178)
T PF02826_consen   81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP  160 (178)
T ss_dssp             EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred             eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Cc-ccCCCCceEEcccCC
Q 042102          269 PE-ELIGLENVVLLPHVA  285 (317)
Q Consensus       269 ~~-~L~~~pnvi~tPH~a  285 (317)
                      ++ |||++|||++|||+|
T Consensus       161 ~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  161 ADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTHHHHTSTTEEEESS-T
T ss_pred             CCChHHcCCCEEEeCccC
Confidence            76 999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=100.00  E-value=4.5e-33  Score=256.17  Aligned_cols=259  Identities=25%  Similarity=0.372  Sum_probs=229.4

Q ss_pred             cCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHH
Q 042102           47 KDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES  126 (317)
Q Consensus        47 ~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~  126 (317)
                      +.++-+-..+.+..++++.+++++.||++.+.+.|+|++|+.+|.+.||.|||.|+...+.+|+-+++.||.++|+....
T Consensus        71 Lneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~  150 (435)
T KOG0067|consen   71 LNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWL  150 (435)
T ss_pred             HHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchh
Confidence            33344455666778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCccCcccc------cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC----CCCccccCCHHHh
Q 042102          127 DRYVRSGEWKKGEFKM------TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP----NLNYKYYPNLIDL  196 (317)
Q Consensus       127 ~~~~~~~~w~~~~~~~------~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~----~~~~~~~~~l~el  196 (317)
                      .+..++|.|.....+.      ....+|.++|++|+|..|+.++.++++||+.|+.||+....    ..+.....+++++
T Consensus       151 cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~  230 (435)
T KOG0067|consen  151 CQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDL  230 (435)
T ss_pred             hhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchh
Confidence            9999999886322111      34678999999999999999999999999999999987543    2344556679999


Q ss_pred             cccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CCcccCC
Q 042102          197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPD--VPEELIG  274 (317)
Q Consensus       197 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~--~~~~L~~  274 (317)
                      +.++|.+++||.+++.+.++|+...+++|+.|+.++|++||.++|+++|.++|+.|++.+++       |.  .-.||.+
T Consensus       231 ~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d  303 (435)
T KOG0067|consen  231 LYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKD  303 (435)
T ss_pred             hhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999887       22  2248999


Q ss_pred             CCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCC
Q 042102          275 LENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPL  312 (317)
Q Consensus       275 ~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  312 (317)
                      .||.++|||.++++..+..++.+..+..+++-..|.-+
T Consensus       304 ~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip  341 (435)
T KOG0067|consen  304 APNLICTPHTAWYSEAASVELREVAALEIRRAITGRIP  341 (435)
T ss_pred             CCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCc
Confidence            99999999999999999999999999999888777654

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.91  E-value=3.2e-23  Score=170.94  Aligned_cols=101  Identities=28%  Similarity=0.441  Sum_probs=86.1

Q ss_pred             EEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCChhh
Q 042102           10 VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLAR   89 (317)
Q Consensus        10 vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~   89 (317)
                      ||+++++.++.++.|++.+++....  ...++.+.+.++++|++++++.+++++++++.+|+||||++.|+|+|+||+++
T Consensus         1 ili~~~~~~~~~~~l~~~~~v~~~~--~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~   78 (133)
T PF00389_consen    1 ILITDPLPDEEIERLEEGFEVEFCD--SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEA   78 (133)
T ss_dssp             EEESSS-SHHHHHHHHHTSEEEEES--SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHH
T ss_pred             eEEeccCCHHHHHHHHCCceEEEeC--CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHH
Confidence            7999999999999999967666543  22455566778999999997777799999999999999999999999999999


Q ss_pred             HhhCCcEEEeCCCCCcHHHHHHH
Q 042102           90 CKEKGIRVANTPDVLTDDVADLA  112 (317)
Q Consensus        90 ~~~~gI~v~n~~~~~~~~vAE~a  112 (317)
                      |+++||.|+|+||+++.+||||+
T Consensus        79 a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   79 AKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             HHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             HhhCeEEEEEeCCcCCcchhccc
Confidence            99999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.87  E-value=2.2e-21  Score=188.27  Aligned_cols=167  Identities=20%  Similarity=0.290  Sum_probs=135.7

Q ss_pred             ECCCCCCcC-ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEe
Q 042102           77 TCSVGLDKI-DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILG  155 (317)
Q Consensus        77 ~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG  155 (317)
                      -+++|+..+ .+......+|+|+|+++++..+++|+++++++++...+      +|.+         +..+.|++|+|+|
T Consensus       197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~---------~~~LaGKtVgVIG  261 (476)
T PTZ00075        197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRAT---------DVMIAGKTVVVCG  261 (476)
T ss_pred             cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhc---------CCCcCCCEEEEEC
Confidence            457787765 22333446899999999999999999999999987333      3333         3469999999999


Q ss_pred             cChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcE
Q 042102          156 MGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV  230 (317)
Q Consensus       156 ~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gav  230 (317)
                      +|.||+.+|+++++||++|+++++++...     .++ ...++++++++||+|++|.    .+.++|+++.|+.||+|++
T Consensus       262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAi  336 (476)
T PTZ00075        262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAI  336 (476)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcE
Confidence            99999999999999999999997664332     122 2457999999999999985    3788999999999999999


Q ss_pred             EEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCc
Q 042102          231 LINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE  270 (317)
Q Consensus       231 lVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~  270 (317)
                      +||+||+   |++.+.++|+++.    ++|+++.||....
T Consensus       337 LINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~  369 (476)
T PTZ00075        337 VGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDR  369 (476)
T ss_pred             EEEcCCC---chHHhHHHHHhcC----CceeecccCCCCe
Confidence            9999999   7888889988654    6899999996543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.83  E-value=1.9e-20  Score=173.60  Aligned_cols=176  Identities=18%  Similarity=0.205  Sum_probs=139.8

Q ss_pred             ccCCceEEEEeC----------------CCCCCHHHHhcCCCceEEEECCCCCCcCChh-hHhhCCcEEE------eCCC
Q 042102           46 HKDSIQAVVGSA----------------AAGADAELIESLPKLEIVATCSVGLDKIDLA-RCKEKGIRVA------NTPD  102 (317)
Q Consensus        46 ~~~~~~~ii~~~----------------~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~------n~~~  102 (317)
                      .++++|+++.+-                ...+++++++.+|   .++...+|+++.|++ +|+++||.|+      |++.
T Consensus        51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~  127 (287)
T TIGR02853        51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI  127 (287)
T ss_pred             hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence            357788877642                2236788999888   377888999999998 9999999999      9999


Q ss_pred             CCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          103 VLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       103 ~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +|+.++||.++.+++..                      .+.+++|++++|+|+|.||+.+|+.|+++|++|.+++|+..
T Consensus       128 ~n~~~~Ae~ai~~al~~----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       128 YNSIPTAEGAIMMAIEH----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             EccHhHHHHHHHHHHHh----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            99999999999877743                      12368999999999999999999999999999999999764


Q ss_pred             CC-----CCcc--ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc-ccCHHHHHHHHHhCCc
Q 042102          183 PN-----LNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL-LVDEHELVSALLQGRL  254 (317)
Q Consensus       183 ~~-----~~~~--~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~-~vd~~aL~~al~~g~i  254 (317)
                      ..     .+..  ...++.++++++|+|++++|..     +++++.++.||+++++||++..+ -+|.    ++.++..+
T Consensus       186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~  256 (287)
T TIGR02853       186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGI  256 (287)
T ss_pred             HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCC
Confidence            32     1111  2345788899999999999953     67889999999999999998743 2443    44455555


Q ss_pred             e
Q 042102          255 G  255 (317)
Q Consensus       255 ~  255 (317)
                      .
T Consensus       257 ~  257 (287)
T TIGR02853       257 K  257 (287)
T ss_pred             E
Confidence            5

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.64  E-value=5.7e-15  Score=137.65  Aligned_cols=200  Identities=15%  Similarity=0.207  Sum_probs=143.0

Q ss_pred             cEEEEeCCCCh--hHHHHHHh-cCeEEEec-CCCC-------hHHHHhhccCCceEEEEeCC----------------CC
Q 042102            8 IIVLMVCPVSN--YLEQEIEK-SFKVFKLW-HFED-------KEQFINTHKDSIQAVVGSAA----------------AG   60 (317)
Q Consensus         8 ~~vl~~~~~~~--~~~~~l~~-~~~~~~~~-~~~~-------~~~~~~~~~~~~~~ii~~~~----------------~~   60 (317)
                      .++.+.....-  +..+.|.+ .+++.... +..+       ......+.+.++|+++..-.                ..
T Consensus         3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~   82 (296)
T PRK08306          3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLV   82 (296)
T ss_pred             cEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCc
Confidence            34555554333  34455654 57776421 1110       01112344678898886411                12


Q ss_pred             CCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEEEeCCCC------CcHHHHHHHHHHHHHHhhchhHHHHHHHcCC
Q 042102           61 ADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDV------LTDDVADLAIGLILAVLRRICESDRYVRSGE  134 (317)
Q Consensus        61 ~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~  134 (317)
                      ++++.++.+|++..+. .|.+.++++ +.|.++||.+.+..+.      ++.++||.++.+.+..               
T Consensus        83 ~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~---------------  145 (296)
T PRK08306         83 LTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEH---------------  145 (296)
T ss_pred             chHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHh---------------
Confidence            4688999999997554 588889988 7899999999997764      8889999977654321               


Q ss_pred             CccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc--ccCCHHHhcccCCEEEEec
Q 042102          135 WKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK--YYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       135 w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~--~~~~l~el~~~aDvV~~~l  207 (317)
                             .+.+++|++++|+|+|.+|+.+++.|+.+|++|.++++++...     .+..  ...++.+.++++|+|+.++
T Consensus       146 -------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        146 -------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             -------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECC
Confidence                   1235789999999999999999999999999999999886432     1222  2246778899999999998


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      |.     .+++++.++.|++++++||++.
T Consensus       219 p~-----~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        219 PA-----LVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             Ch-----hhhhHHHHHcCCCCcEEEEEcc
Confidence            83     4678999999999999999975

>PLN02494 adenosylhomocysteinase

Probab=99.61  E-value=9.5e-16  Score=148.85  Aligned_cols=116  Identities=18%  Similarity=0.207  Sum_probs=100.4

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      .+.|++|+|+|+|.||+.+|+++++||++|+++++++...     .++. ..+++++++.+|+|+.+    ..+++++++
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~  325 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV  325 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence            4789999999999999999999999999999998876432     1222 34788999999999873    347889999


Q ss_pred             HHHhccCCCcEEEEeCC-CcccCHHHHHHH--HHhCCceEEEeeCCCCCC
Q 042102          220 QVINALGPKGVLINIGR-GLLVDEHELVSA--LLQGRLGGAGLDVFEHEP  266 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~r-g~~vd~~aL~~a--l~~g~i~ga~lDV~~~EP  266 (317)
                      +.|+.||+|++++|+|| +..||+++|.++  ++.+.++ +.+|+|+.|-
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            99999999999999999 679999999998  9999998 9999998854

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.52  E-value=4.5e-14  Score=135.98  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=98.4

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      .+.|++|+|+|+|.||+.+|++++++|++|+++++.+...     .++ ...+++++++.+|+|+.+..    +.++|+.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence            4789999999999999999999999999999998765432     122 23467889999999987644    6788999


Q ss_pred             HHHhccCCCcEEEEeCCCcc-cCHHHHHHHHHhCCceEEEeeCCCC
Q 042102          220 QVINALGPKGVLINIGRGLL-VDEHELVSALLQGRLGGAGLDVFEH  264 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~-vd~~aL~~al~~g~i~ga~lDV~~~  264 (317)
                      +.|..||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999998887777789998874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.49  E-value=6.3e-14  Score=130.19  Aligned_cols=88  Identities=18%  Similarity=0.247  Sum_probs=75.0

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ..|+|+||||||+|.||+++|++|+++|++|+++++.....     .+.. ..++++++++||+|++++|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            46999999999999999999999999999999887653321     1232 35899999999999999997 67799999


Q ss_pred             HHHHhccCCCcEEEE
Q 042102          219 RQVINALGPKGVLIN  233 (317)
Q Consensus       219 ~~~l~~mk~gavlVN  233 (317)
                      ++.++.||+|++|+-
T Consensus        90 ~eil~~MK~GaiL~f  104 (335)
T PRK13403         90 AEVEENLREGQMLLF  104 (335)
T ss_pred             HHHHhcCCCCCEEEE
Confidence            999999999998754

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.46  E-value=2.3e-13  Score=125.06  Aligned_cols=111  Identities=15%  Similarity=0.222  Sum_probs=100.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQ  220 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~  220 (317)
                      ++|||||+|.||..||++|...|+.|.+|||++.+.      .+.....+..|+.+.+|+|++|+|..++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            479999999999999999999999999999997762      3555677889999999999999999999999874  57


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      .++.+|+|+++||+++.+......+.+.++++.+.  .+|.
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA  119 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA  119 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence            89999999999999999999999999999999987  6773

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.44  E-value=1.5e-13  Score=117.13  Aligned_cols=111  Identities=14%  Similarity=0.273  Sum_probs=89.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc-HHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN-RQVI  222 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~-~~~l  222 (317)
                      ++|||||+|.||+.+|++|...|++|.+||+++++.     .+.....++.|++++||+|++++|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            589999999999999999999999999999886542     3455678999999999999999999998888763 2378


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      +.+++|.++||++....-....+.+.+.+..+.  .+|.
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA  118 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence            889999999999999999999999999988876  6664

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.37  E-value=1.9e-12  Score=125.53  Aligned_cols=152  Identities=17%  Similarity=0.195  Sum_probs=110.8

Q ss_pred             EECCCCCCcC-ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEE
Q 042102           76 ATCSVGLDKI-DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGIL  154 (317)
Q Consensus        76 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIi  154 (317)
                      =-+++|+..+ ......+.+++|.|++..+..+.-|...+.-               .+.|..-.......+.|++|+|+
T Consensus       154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~ai~rat~~~l~Gk~VlVi  218 (425)
T PRK05476        154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDGIKRATNVLIAGKVVVVA  218 (425)
T ss_pred             ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------------hhhHHHHHHhccCCCCCCEEEEE
Confidence            3467788775 3333345789999999988877554332222               22232000001234789999999


Q ss_pred             ecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102          155 GMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG  229 (317)
Q Consensus       155 G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  229 (317)
                      |+|.||+.+|++++++|++|+++++++...     .++. ..+++++++.+|+|+.+..    +.++|+.+.|..||+|+
T Consensus       219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~Ga  293 (425)
T PRK05476        219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGA  293 (425)
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999876442     1222 3468899999999988753    56789999999999999


Q ss_pred             EEEEeCCCcc-cCHHHHHH
Q 042102          230 VLINIGRGLL-VDEHELVS  247 (317)
Q Consensus       230 vlVN~~rg~~-vd~~aL~~  247 (317)
                      +++|+|+... +|.++|.+
T Consensus       294 iliNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        294 ILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             EEEEcCCCCCccChHHHhh
Confidence            9999999876 78777754

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.27  E-value=9.5e-12  Score=105.00  Aligned_cols=99  Identities=17%  Similarity=0.303  Sum_probs=71.6

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ..+.||++.|+|||.+|+.+|+.|+++|++|.+++..+...     .++. ..+++++++++|+++.+..    ..+++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence            46899999999999999999999999999999999876432     2333 3579999999999888855    457889


Q ss_pred             HHHHhccCCCcEEEEeCCCcc-cCHHHHHH
Q 042102          219 RQVINALGPKGVLINIGRGLL-VDEHELVS  247 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~-vd~~aL~~  247 (317)
                      .+.|++||+|+++.|++.-.. +|.+.|.+
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            999999999999999987555 56655443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.27  E-value=1.7e-11  Score=113.87  Aligned_cols=109  Identities=10%  Similarity=0.207  Sum_probs=91.1

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccc-c-HHHH
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIV-N-RQVI  222 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li-~-~~~l  222 (317)
                      +|||||+|.||+.+|+.|...|++|.+|++++...     .+.....+..+++++||+|++|+|.++.++.++ + ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            58999999999999999999999999999986432     223345678899999999999999988887764 3 3467


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD  260 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD  260 (317)
                      ..+++|.++||+++....+.+.+.+.++++.+.  .+|
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~  116 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD  116 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence            788999999999999998889999999987665  455

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.26  E-value=2.8e-11  Score=113.05  Aligned_cols=109  Identities=17%  Similarity=0.276  Sum_probs=92.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhccc---CCEEEEeccCChhhhccccHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASN---CQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~---aDvV~~~lp~~~~t~~li~~~  220 (317)
                      ++|||||+|.||+.+|++|...|.+|.+||+++...     .+.....++++++++   +|+|++++|..+.++.++ .+
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence            379999999999999999999999999999876432     233445688888776   699999999988888877 46


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD  260 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD  260 (317)
                      .+..+++|.++||+++....+...+.+.+.+..+.  .+|
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            77889999999999999999999999999888775  577

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.26  E-value=2e-11  Score=113.60  Aligned_cols=107  Identities=15%  Similarity=0.260  Sum_probs=90.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~  221 (317)
                      ++|||||+|.||+.+|+.+...|++|.+||+++...     .+.....++++++++||+|++++|.+..++.++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999876432     2233456789999999999999999888887763  346


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++.+++|.++||+++..+...+++.+.+.+..+.
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~  116 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE  116 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            7789999999999999988888999999887665

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.25  E-value=2.9e-11  Score=112.82  Aligned_cols=111  Identities=10%  Similarity=0.174  Sum_probs=94.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~  221 (317)
                      ++|||||+|.||..+|+.|...|++|.+||+++...     .+.....+..+++++||+|++|+|....++.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            379999999999999999999999999999976542     2333456888999999999999999887777663  346


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      +..+++|.++||++++.+...+.+.+.+.+..+.  .+|.
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            7788999999999999999999999999998877  5664

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.19  E-value=1e-10  Score=109.36  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=92.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhccc---CCEEEEeccCChhhhccccHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASN---CQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~---aDvV~~~lp~~~~t~~li~~~  220 (317)
                      ++|||||+|.||+.+|++|...|.+|.+||+++...     .+.....+++++++.   +|+|++++|..+.++.++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            379999999999999999999999999999986432     233445678888775   699999999987777776 46


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      .+..+++|.++||++++.......+.+.+++..+.  .+|.
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            77889999999999999999999999999998887  5674

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.15  E-value=1.3e-10  Score=114.87  Aligned_cols=116  Identities=13%  Similarity=0.165  Sum_probs=96.7

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------Ccc---ccCCHHHhccc---CCEEEEeccCChhhh
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYK---YYPNLIDLASN---CQILVVACSLTEETQ  214 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~---~~~~l~el~~~---aDvV~~~lp~~~~t~  214 (317)
                      +|||||+|.||+.||++|...|++|.+|||++.+..         +..   ...+++|+++.   +|+|++|+|..+.++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            699999999999999999999999999999865321         221   35678888775   999999999999999


Q ss_pred             ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 042102          215 HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP  266 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP  266 (317)
                      .++ ...++.+++|.++||+|....-+...+.+.+++..+.....=|...++
T Consensus        88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            888 568889999999999999999999999999999988843333444433

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.10  E-value=3.1e-10  Score=105.72  Aligned_cols=111  Identities=11%  Similarity=0.122  Sum_probs=91.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccH--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR--QVI  222 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~--~~l  222 (317)
                      ++|||||+|.||+.++++|...|++|.+|++++...    .+.....+..+++++||+|++++|..++++.++..  ..+
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            379999999999999999999999999998865321    23334567889999999999999998888876632  356


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      +.+++|.++|+++....-....+.+.+.+..+.  .+|.
T Consensus        81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            778999999999999988888999999888765  6674

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.09  E-value=2.9e-10  Score=106.95  Aligned_cols=91  Identities=15%  Similarity=0.214  Sum_probs=74.0

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      ..++|++|||||+|+||+++|+.|+.+|++|.++++.....      .+.. ..+..+++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            45899999999999999999999999999998776543221      1222 34889999999999999997765 6777


Q ss_pred             cHHHHhccCCCcEEEEeCCC
Q 042102          218 NRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg  237 (317)
                      +++.+..|++|+++ -.+.|
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCC
Confidence            77888899999988 66666

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.05  E-value=7.5e-10  Score=107.24  Aligned_cols=99  Identities=15%  Similarity=0.205  Sum_probs=80.6

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ..+.|++|+|+|+|.||+.+++.++++|++|+++++++...     .++ ...++++.++.+|+|+.+..    +.++++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-~~~~~~e~v~~aDVVI~atG----~~~~i~  272 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-EVMTMEEAVKEGDIFVTTTG----NKDIIT  272 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-EEccHHHHHcCCCEEEECCC----CHHHHH
Confidence            35789999999999999999999999999999998775432     222 22356788899999988754    456788


Q ss_pred             HHHHhccCCCcEEEEeCCCcc-cCHHHHHH
Q 042102          219 RQVINALGPKGVLINIGRGLL-VDEHELVS  247 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~-vd~~aL~~  247 (317)
                      ...+..||+|++++|+|++.+ +|...|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 77777654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.05  E-value=5.7e-10  Score=101.83  Aligned_cols=114  Identities=11%  Similarity=0.187  Sum_probs=97.0

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--  218 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--  218 (317)
                      -+.++||+||+|.||..|+..|-..|++|++|||+..+.     .+.....++.|+.+.||+|+.++|.....+.++.  
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~  112 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK  112 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence            357899999999999999999999999999999987654     3555678999999999999999999999888763  


Q ss_pred             HHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          219 RQVINALGPKGVL-INIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       219 ~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      ...|+..++|... |+.+.-+.--...|.++++.....  .+|-
T Consensus       113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA  154 (327)
T KOG0409|consen  113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA  154 (327)
T ss_pred             CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence            4467888888877 899988877778899999988776  5663

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.03  E-value=1.1e-09  Score=107.99  Aligned_cols=110  Identities=15%  Similarity=0.242  Sum_probs=94.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----C-----C--ccccCCHHHhcc---cCCEEEEeccCChhhh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----L-----N--YKYYPNLIDLAS---NCQILVVACSLTEETQ  214 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~-----~--~~~~~~l~el~~---~aDvV~~~lp~~~~t~  214 (317)
                      .+|||||+|.||+.+|++|...|++|.+|||++...    .     +  .....+++++++   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            379999999999999999999999999999986541    0     2  123568888876   5899999999999999


Q ss_pred             ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          215 HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      .++ ++.+..+++|.++||++.+..-|...+.+.+.+..+.  .+|+
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda  125 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM  125 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence            888 4677889999999999999999999999999999988  5553

>PLN02858 fructose-bisphosphate aldolase

Probab=99.02  E-value=9.9e-10  Score=120.41  Aligned_cols=113  Identities=14%  Similarity=0.132  Sum_probs=97.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccc--cH
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIV--NR  219 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li--~~  219 (317)
                      ..++|||||+|.||..||++|...|+.|.+||+++.+.     .+.....++.|+.++||+|++|+|..++++.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            35689999999999999999999999999999986543     344567899999999999999999999999876  35


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCC--ceEEEeeC
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGR--LGGAGLDV  261 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~--i~ga~lDV  261 (317)
                      ..++.+++|.++|++|+..+-....+.+.+.+..  +.  .+|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence            6788899999999999999999999999998877  54  6774

>PLN02256 arogenate dehydrogenase

Probab=99.02  E-value=3.7e-09  Score=98.93  Aligned_cols=135  Identities=13%  Similarity=0.116  Sum_probs=89.7

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhc-ccCCEEEEeccCChhhhccccHH
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLA-SNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      -++++|||||+|.||+.+++.++..|.+|.+++++....    .+.....++++++ ..+|+|++|+|.. .+..++.+-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence            367899999999999999999999999999998875321    1233345777776 4799999999964 566666443


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccC
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHV  284 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~  284 (317)
                      ....+++++++++++...-+..+++.+.+..+. .  .+=....-+... ...+...+++++|+.
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~-~--~V~~HPmaG~e~~~~~~~~~~~~~~~~~  174 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF-D--ILCTHPMFGPESGKGGWAGLPFVYDKVR  174 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC-e--EEecCCCCCCCCCccccCCCeEEEecce
Confidence            256689999999999966555556665553321 1  111122211111 134555667777653

>PLN02712 arogenate dehydrogenase

Probab=99.02  E-value=7.5e-10  Score=113.63  Aligned_cols=108  Identities=16%  Similarity=0.251  Sum_probs=83.2

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcc-cCCEEEEeccCChhhhccc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLAS-NCQILVVACSLTEETQHIV  217 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~-~aDvV~~~lp~~~~t~~li  217 (317)
                      ++++.+++|||||+|.||+.+|+.++.+|++|.+|+++....    .+.....++++++. .+|+|++|+|. ..+..++
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi  442 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL  442 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence            456789999999999999999999999999999999874321    22333467888775 59999999995 5677777


Q ss_pred             cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      .+-....||+|++++|++.+.-...+.+.+.+..
T Consensus       443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            6655557999999999999875444555555443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.00  E-value=2.2e-09  Score=100.32  Aligned_cols=109  Identities=17%  Similarity=0.199  Sum_probs=88.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHh---cccCCEEEEeccCChhhhccccHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDL---ASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el---~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      ++|||||+|.||..+|+.|...|.+|.+|||++...     .+.....+++++   +.++|+|++++|.. .++.++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            479999999999999999999999999999986532     122223455554   46789999999988 777777 46


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      ....+++|.++||++.+...+...+.+.+++..+.  .+|.
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda  117 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC  117 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence            77888999999999999888999999999887776  5664

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=98.96  E-value=1.9e-09  Score=118.30  Aligned_cols=112  Identities=13%  Similarity=0.100  Sum_probs=95.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccc--cHH
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIV--NRQ  220 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li--~~~  220 (317)
                      .++|||||+|.||..||++|...|++|.+||+++...     .+.....+..+++++||+|++|+|..++++.++  ...
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            4789999999999999999999999999999876542     233345788999999999999999999998887  345


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHh--CCceEEEeeC
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQ--GRLGGAGLDV  261 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~--g~i~ga~lDV  261 (317)
                      .++.+++|.++||++...+-..+.+.+.+.+  ..+.  .+|.
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA  444 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA  444 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence            7888999999999999998888899999988  5555  5664

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.92  E-value=2.8e-09  Score=98.99  Aligned_cols=107  Identities=8%  Similarity=0.049  Sum_probs=87.3

Q ss_pred             EEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHHHhcc
Q 042102          153 ILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQVINAL  225 (317)
Q Consensus       153 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~l~~m  225 (317)
                      |||+|.||..+|+.|...|.+|.+|++++...     .+.....++.+++++||+|++|+|....++.++.  ...+..+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999876532     2333456889999999999999998887777662  4566788


Q ss_pred             CCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       226 k~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      ++|.++||++...+-....+.+.+++..+.  .+|.
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda  114 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA  114 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence            999999999987776777888888877665  5773

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.90  E-value=1.1e-08  Score=95.22  Aligned_cols=99  Identities=18%  Similarity=0.180  Sum_probs=74.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C------------ccccCCHHHhcccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N------------YKYYPNLIDLASNC  200 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~------------~~~~~~l~el~~~a  200 (317)
                      ++|||||+|.||..+|..+...|++|.+||+++....                +            .....+..+.++.|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            5899999999999999999999999999998764311                0            01122223568999


Q ss_pred             CEEEEeccCChhhhccccHHHHhccCCCcEEE-EeCCCcccCHHHHHHHHH
Q 042102          201 QILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSALL  250 (317)
Q Consensus       201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlV-N~~rg~~vd~~aL~~al~  250 (317)
                      |+|+.++|.+++.+..+-++..+.++++++|+ |+|.-.   ...+.+.+.
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            99999999999988777677777799999987 676653   445555554

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.89  E-value=6.2e-09  Score=102.79  Aligned_cols=109  Identities=11%  Similarity=0.176  Sum_probs=89.8

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C---C--ccccCCHHHhc---ccCCEEEEeccCChhhhcc
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L---N--YKYYPNLIDLA---SNCQILVVACSLTEETQHI  216 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~---~--~~~~~~l~el~---~~aDvV~~~lp~~~~t~~l  216 (317)
                      .|||||+|.||+.+|++|...|++|.+|+|++...     .   +  .....+++++.   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            38999999999999999999999999999976532     1   1  22345677765   5799999999998888888


Q ss_pred             ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      + .+.+..+++|.++||++....-|...+.+.+.+..+.  .+|.
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda  122 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS  122 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence            7 4677889999999999999988988999999888887  5554

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.86  E-value=2.1e-08  Score=98.48  Aligned_cols=128  Identities=17%  Similarity=0.250  Sum_probs=90.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      ++|+||| +|.||+.+|+.|+..|.+|.++++++...      .+.....+..+.+.+||+|++++|.. .+..++ ++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence            4799998 89999999999999999999999875431      12233457788899999999999964 345555 456


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CCcccCCCCceEEcccC
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPD--VPEELIGLENVVLLPHV  284 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~--~~~~L~~~pnvi~tPH~  284 (317)
                      ...+++++++++++.......+++.+.+..+ ..  .+..   -|.  +..+++.-..++++|+-
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence            6778999999999985544445555554332 11  2222   232  22357777889999964

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.86  E-value=9.4e-09  Score=96.43  Aligned_cols=83  Identities=24%  Similarity=0.378  Sum_probs=68.9

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh-cc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN-AL  225 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~-~m  225 (317)
                      .+++|||||+|.+|+.+|++|...|++|.+|+|+..        .+++++++++|+|++++|. +.++.++.. ... .+
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~~~~   72 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQALNL   72 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHHhcC
Confidence            467999999999999999999999999999998653        4688999999999999997 467777633 323 47


Q ss_pred             CCCcEEEEeCCCcc
Q 042102          226 GPKGVLINIGRGLL  239 (317)
Q Consensus       226 k~gavlVN~~rg~~  239 (317)
                      ++++++|++++|-.
T Consensus        73 ~~~~ivi~~s~gi~   86 (308)
T PRK14619         73 PPETIIVTATKGLD   86 (308)
T ss_pred             CCCcEEEEeCCccc
Confidence            88999999987543

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.81  E-value=7.4e-09  Score=96.55  Aligned_cols=106  Identities=18%  Similarity=0.254  Sum_probs=86.0

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      .+.||++.|.|||.+|+.+|.+++++|++|++....+-..     .++ ...+++++...+|+++.+.-    ++++|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf-~V~~m~~Aa~~gDifiT~TG----nkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKTGDIFVTATG----NKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCc-EEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence            4689999999999999999999999999999988766443     223 34579999999999998866    6789999


Q ss_pred             HHHhccCCCcEEEEeCCCcc-cCHHHHHH-HHHhCCce
Q 042102          220 QVINALGPKGVLINIGRGLL-VDEHELVS-ALLQGRLG  255 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~-vd~~aL~~-al~~g~i~  255 (317)
                      ++|..||+|+++-|.|.-.+ +|...|.+ +++...++
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr  318 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR  318 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence            99999999999999997666 57666653 34444444

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.80  E-value=1.9e-08  Score=98.33  Aligned_cols=131  Identities=11%  Similarity=0.141  Sum_probs=89.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCc----------------cccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNY----------------KYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~----------------~~~~~l~el~~~aDvV~~~lp  208 (317)
                      ++|||||+|.||..+|..+.. |++|++||+++.+.    .+.                ....+..+.+++||++++|+|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp   85 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP   85 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence            689999999999999999877 79999999876432    111                012233456899999999999


Q ss_pred             CC------hhhhccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC--Cce-E-EEeeCCCCCCCCCc----cc
Q 042102          209 LT------EETQHIV--NRQVINALGPKGVLINIGRGLLVDEHELVSALLQG--RLG-G-AGLDVFEHEPDVPE----EL  272 (317)
Q Consensus       209 ~~------~~t~~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g--~i~-g-a~lDV~~~EP~~~~----~L  272 (317)
                      ..      ++...++  .+...+.+++|.++|+.|.-.+--.+.+.+.+.+.  .+. + ...=++.+||..+.    .+
T Consensus        86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~  165 (425)
T PRK15182         86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL  165 (425)
T ss_pred             CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence            66      3334444  24566789999999999998887777654443332  222 1 11114677887653    57


Q ss_pred             CCCCceEE
Q 042102          273 IGLENVVL  280 (317)
Q Consensus       273 ~~~pnvi~  280 (317)
                      ...|+++.
T Consensus       166 ~~~~riv~  173 (425)
T PRK15182        166 TNIKKITS  173 (425)
T ss_pred             cCCCeEEE
Confidence            77777754

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.80  E-value=1.5e-08  Score=95.12  Aligned_cols=92  Identities=13%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeC-CCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNS-RTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~-~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      |+|++|||||+|+||+++|+.|+.+|++|++++ +.....     .+.. ..+..+++++||+|++++|.... ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            578999999999999999999999999887544 332221     1222 34688899999999999996544 334456


Q ss_pred             HHHhccCCCcEEEEeCCCccc
Q 042102          220 QVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~v  240 (317)
                      +....+++|. +|.++.|=-+
T Consensus        79 ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCccH
Confidence            6677888886 7888887544

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.80  E-value=2.5e-08  Score=92.26  Aligned_cols=129  Identities=19%  Similarity=0.238  Sum_probs=82.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCc-cccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNY-KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~-~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      ++|||||+|.||+.+|..|+..|.+|.+|++++...     .+. ....+..+.+++||+|++++|.... ..++ ++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~-~~~~-~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLL-LPPS-EQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHH-HHHH-HHHH
Confidence            479999999999999999999999999999875432     111 1122223568899999999995543 3333 5566


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCC---CCCC-CC---cccCCCCceEEcccCC
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFE---HEPD-VP---EELIGLENVVLLPHVA  285 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~---~EP~-~~---~~L~~~pnvi~tPH~a  285 (317)
                      ..+++++++++++.-.   .+ ..+++....-.  .+....   .|.. ..   ..|+.-.++++||+-.
T Consensus        79 ~~l~~~~ii~d~~Svk---~~-~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~  142 (279)
T PRK07417         79 PALPPEAIVTDVGSVK---AP-IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN  142 (279)
T ss_pred             HhCCCCcEEEeCcchH---HH-HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC
Confidence            7789999999988744   22 23333322112  222221   1111 11   1367778899999754

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.79  E-value=5.9e-09  Score=100.81  Aligned_cols=96  Identities=18%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             CCccCcccc-cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC------CCC-----CCccccCCHHHhcccCC
Q 042102          134 EWKKGEFKM-TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE------KPN-----LNYKYYPNLIDLASNCQ  201 (317)
Q Consensus       134 ~w~~~~~~~-~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~------~~~-----~~~~~~~~l~el~~~aD  201 (317)
                      .|.+..++. ...|+|+||+|||+|.+|+.-|..|+..|.+|.+--|..      ...     .++ ...+++|++++||
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~AD   99 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQAD   99 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCC
Confidence            466555533 357999999999999999988888888888776332221      111     222 3467999999999


Q ss_pred             EEEEeccCChhhhccccHHHHhccCCCcEEE
Q 042102          202 ILVVACSLTEETQHIVNRQVINALGPKGVLI  232 (317)
Q Consensus       202 vV~~~lp~~~~t~~li~~~~l~~mk~gavlV  232 (317)
                      +|++.+|++.  ++.+.++.++.||+|+.|.
T Consensus       100 vVviLlPDt~--q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225        100 LVINLTPDKQ--HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             EEEEcCChHH--HHHHHHHHHhhCCCCCEEE
Confidence            9999999993  6777799999999999864

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.78  E-value=5.5e-08  Score=90.30  Aligned_cols=110  Identities=13%  Similarity=0.069  Sum_probs=79.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC-----------------------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN-----------------------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-----------------------------~~~~~~l~el~~~  199 (317)
                      ++|+|||+|.||..+|..+...|++|.+||+++.....                             .....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            47999999999999999999999999999987543100                             1124567889999


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVL-INIGRGLLVDEHELVSALLQGRLGGAGLDVF  262 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i~ga~lDV~  262 (317)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+   ..+.+.++ ..-+..++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~-~~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTK-RPERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcC-CcccEEEEecC
Confidence            99999999988776655445566778999876 78877443   45555553 22223455555

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.76  E-value=3.5e-08  Score=91.58  Aligned_cols=80  Identities=20%  Similarity=0.340  Sum_probs=68.1

Q ss_pred             cccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||+|+|||.| .||+.+|.+|...|++|.++++..         .++.++.++||+|+++++..    +++.+..
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------~~l~e~~~~ADIVIsavg~~----~~v~~~~  220 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------TDAKALCRQADIVVAAVGRP----RLIDADW  220 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhcCCEEEEecCCh----hcccHhh
Confidence            457999999999996 999999999999999999997643         27899999999999999855    3565554


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                         +|+|+++||+|--.
T Consensus       221 ---ik~GaiVIDvgin~  234 (301)
T PRK14194        221 ---LKPGAVVIDVGINR  234 (301)
T ss_pred             ---ccCCcEEEEecccc
Confidence               79999999998654

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.74  E-value=1.3e-07  Score=90.75  Aligned_cols=136  Identities=17%  Similarity=0.180  Sum_probs=88.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------CCc--cccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------LNY--KYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|+|||+|.||+++|+.|+..|..|.++++++...       .+.  ....++++++++||+|++++|.. .+..++. 
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~-   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA-   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence            479999999999999999999998887777654422       111  12346788899999999999974 4566653 


Q ss_pred             HHHh-ccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC----------cccCCCCceEEcccCCCcc
Q 042102          220 QVIN-ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP----------EELIGLENVVLLPHVASAT  288 (317)
Q Consensus       220 ~~l~-~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~----------~~L~~~pnvi~tPH~a~~t  288 (317)
                      +... .+++++++++++.-..--.+.+.+.+ .....  .++.+   |...          ..|+.....++||+-. .+
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~-~~  151 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH-TD  151 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC-CC
Confidence            3333 47899999999876543333333321 12222  34432   3221          1477777889999743 33


Q ss_pred             HHHHH
Q 042102          289 VETRK  293 (317)
Q Consensus       289 ~~~~~  293 (317)
                      .+..+
T Consensus       152 ~~~~~  156 (359)
T PRK06545        152 PDAVA  156 (359)
T ss_pred             HHHHH
Confidence            44433

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.73  E-value=9.8e-08  Score=89.43  Aligned_cols=140  Identities=14%  Similarity=0.225  Sum_probs=88.5

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CCc--cccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LNY--KYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      .++|+|||+|.||+.+++.++..|.  +|.++++++...     .+.  ....++++.+++||+|++++|... +..++ 
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~-   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA-   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH-
Confidence            4689999999999999999998885  899999875421     111  123567788899999999999643 23333 


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCC---CC---CCCC-cccCCCCceEEcccCCCccHHH
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFE---HE---PDVP-EELIGLENVVLLPHVASATVET  291 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~---~E---P~~~-~~L~~~pnvi~tPH~a~~t~~~  291 (317)
                      ++....++++.++++++....--.+++.+.+. ..+.  .+..+.   .|   |... .+|+.-.+++++|+-+ .+.+.
T Consensus        84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~-~~~~~  159 (307)
T PRK07502         84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEG-TDPAA  159 (307)
T ss_pred             HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCC-CCHHH
Confidence            44556789999999987644222222322222 1222  333322   12   1111 2577777899999754 34444


Q ss_pred             HH
Q 042102          292 RK  293 (317)
Q Consensus       292 ~~  293 (317)
                      .+
T Consensus       160 ~~  161 (307)
T PRK07502        160 VA  161 (307)
T ss_pred             HH
Confidence            43

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.71  E-value=1.4e-07  Score=92.18  Aligned_cols=104  Identities=11%  Similarity=0.117  Sum_probs=74.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----C--ccccCCHHHh---------------cccCCEEEEec
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----N--YKYYPNLIDL---------------ASNCQILVVAC  207 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~--~~~~~~l~el---------------~~~aDvV~~~l  207 (317)
                      ++|+|||+|.||..+|..|+..|.+|++||+++....    +  ......++++               ++.||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            6899999999999999999999999999998765321    0  0112234443               34799999999


Q ss_pred             cCC------hhhhccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          208 SLT------EETQHIV--NRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       208 p~~------~~t~~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      |..      ++...+.  -+...+.+++|+++|+.|.-.+--.+.+...+.+.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            964      1212221  24566778999999999997777777777666653

>PLN02712 arogenate dehydrogenase

Probab=98.70  E-value=3.1e-08  Score=101.85  Aligned_cols=93  Identities=16%  Similarity=0.282  Sum_probs=72.0

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhc-ccCCEEEEeccCChhhhccccH
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLA-SNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      .-+.++|||||+|.||+.+|+.++.+|++|.+++++....    .+.....++++++ .+||+|++|+|. ..+..++.+
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~  127 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS  127 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence            3455799999999999999999999999999998864321    2333455777865 569999999995 467777765


Q ss_pred             HHHhccCCCcEEEEeCCCc
Q 042102          220 QVINALGPKGVLINIGRGL  238 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~  238 (317)
                      -.+..+++|++++|+++-.
T Consensus       128 l~~~~l~~g~iVvDv~SvK  146 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLSVK  146 (667)
T ss_pred             hhhhcCCCCeEEEECCCCc
Confidence            4446789999999997544

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.70  E-value=2.1e-07  Score=85.20  Aligned_cols=98  Identities=16%  Similarity=0.268  Sum_probs=73.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC----EEEEe-CCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC----IIGYN-SRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~-~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ++|||||+|.||+++++.|...|.    +|+++ +|++...     .+.....+..+++++||+|++++| .+....++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            479999999999999999998887    88888 8765432     233345678888999999999996 45566666 


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      .+....++++.++|++.-|  +..+.+.+.+.
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            3455667889999988665  46666665553

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.70  E-value=2e-08  Score=84.58  Aligned_cols=89  Identities=13%  Similarity=0.264  Sum_probs=62.9

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      |+||+|+|||||..|++-|.+|+..|.+|.+-.+...+.      .++ ...+..|++++||+|++.+|...+ ..+..+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf-~v~~~~eAv~~aDvV~~L~PD~~q-~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF-EVMSVAEAVKKADVVMLLLPDEVQ-PEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--ECCEHHHHHHC-SEEEE-S-HHHH-HHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC-eeccHHHHHhhCCEEEEeCChHHH-HHHHHH
Confidence            679999999999999999999999999998776654421      222 346899999999999999996544 335567


Q ss_pred             HHHhccCCCcEEEEeCCC
Q 042102          220 QVINALGPKGVLINIGRG  237 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg  237 (317)
                      +....||+|+.++ .+.|
T Consensus        80 ~I~p~l~~G~~L~-fahG   96 (165)
T PF07991_consen   80 EIAPNLKPGATLV-FAHG   96 (165)
T ss_dssp             HHHHHS-TT-EEE-ESSS
T ss_pred             HHHhhCCCCCEEE-eCCc
Confidence            7888999999865 4444

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.67  E-value=2.4e-08  Score=96.06  Aligned_cols=91  Identities=16%  Similarity=0.272  Sum_probs=72.4

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcc------ccCCHHHhcccCCEEEEeccCC-h
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYK------YYPNLIDLASNCQILVVACSLT-E  211 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~------~~~~l~el~~~aDvV~~~lp~~-~  211 (317)
                      .+.+.+|.|+|+|.+|+.+++.++.+|++|.++|++....      .+..      ...++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            3678899999999999999999999999999999865321      1110      1134677889999999998653 2


Q ss_pred             hhhccccHHHHhccCCCcEEEEeC
Q 042102          212 ETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      .+..+++++.++.||+++++||++
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEe
Confidence            345688999999999999999997

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.66  E-value=7e-07  Score=85.63  Aligned_cols=121  Identities=13%  Similarity=0.201  Sum_probs=82.5

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhh-CCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH-
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEA-FDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI-  222 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l-  222 (317)
                      +...+|+|||+ |.||+.+|+.++. +|.+|+++|+...      ...++++.+++||+|++|+|.... ..++. +.. 
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~~~-~~~l~-~l~~   73 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIRHT-AALIE-EYVA   73 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHHHH-HHHHH-HHhh
Confidence            34579999999 9999999999985 5889999998521      234678889999999999996543 33442 222 


Q ss_pred             --hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC-C--cccCCCCceEEccc
Q 042102          223 --NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV-P--EELIGLENVVLLPH  283 (317)
Q Consensus       223 --~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~-~--~~L~~~pnvi~tPH  283 (317)
                        ..+++|+++++++.-.-    ...+++.....     ++...-|.. +  ..+++.-++++||.
T Consensus        74 ~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         74 LAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             hhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence              34799999999987442    22222222211     223334432 1  25777788999996

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.66  E-value=2.8e-07  Score=85.62  Aligned_cols=136  Identities=12%  Similarity=0.122  Sum_probs=90.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------------------------------CccccCCHHHhcc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------------------------------NYKYYPNLIDLAS  198 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------------~~~~~~~l~el~~  198 (317)
                      ++|+|||.|.||..+|..+...|.+|..+|++++...                              ......++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            5899999999999999999999999999998753210                              0112467888899


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCce
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENV  278 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnv  278 (317)
                      .||+|+.++|...+...-+-++..+.++++++++..+++  .....+.+.+.... +..++-.       ..|.+..|.+
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~lv  153 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNNTA  153 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCeE
Confidence            999999999977655444445566678889988543333  34455666554222 2223221       2345677888


Q ss_pred             EEcccCCCccHHHHHHH
Q 042102          279 VLLPHVASATVETRKAM  295 (317)
Q Consensus       279 i~tPH~a~~t~~~~~~~  295 (317)
                      .+.|+-. .+.+..+++
T Consensus       154 evv~~~~-t~~~~~~~~  169 (287)
T PRK08293        154 EIMGHPG-TDPEVFDTV  169 (287)
T ss_pred             EEeCCCC-CCHHHHHHH
Confidence            8988744 344444443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.66  E-value=2.9e-08  Score=76.60  Aligned_cols=85  Identities=19%  Similarity=0.297  Sum_probs=61.9

Q ss_pred             eEEEEecChhHHHHHHHHhhCC---CEEE-EeCCCCCCC------CCccccC-CHHHhcccCCEEEEeccCChhhhcccc
Q 042102          150 SVGILGMGRIGTAIAKRAEAFD---CIIG-YNSRTEKPN------LNYKYYP-NLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G---~~V~-~~~~~~~~~------~~~~~~~-~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ||||||+|+||+.+++.+...|   .+|. +++|+++..      .+..... +..+++++||+|++++|...- ..+ -
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~-~~v-~   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQL-PEV-L   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGH-HHH-H
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHH-HHH-H
Confidence            6999999999999999999999   8998 558876543      1222233 789999999999999995432 223 2


Q ss_pred             HHHHhccCCCcEEEEeCCC
Q 042102          219 RQVINALGPKGVLINIGRG  237 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg  237 (317)
                      .+. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            333 566789999998654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.66  E-value=4.8e-07  Score=85.28  Aligned_cols=100  Identities=11%  Similarity=0.151  Sum_probs=78.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------C----C-----ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------L----N-----YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~----~-----~~~~~~l~el~~~aDvV  203 (317)
                      ++|||||.|.||..+|..+...|++|..||++++..                .    +     .....+++++++.||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            589999999999999999999999999999875421                0    0     12345788999999999


Q ss_pred             EEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          204 VVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       204 ~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      +-++|.+.+.+.-+-++..+.++++++| .++..+ ....++.+.+.
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~  132 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARAT  132 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcC
Confidence            9999999998887778888889999954 444443 35556666664

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.65  E-value=6e-07  Score=86.54  Aligned_cols=81  Identities=14%  Similarity=0.262  Sum_probs=66.4

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhcc
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL  225 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~m  225 (317)
                      ..++|+||| +|.||+.+|+.|+..|..|.+|++..        ..+.++++++||+|++|+|.... ..++ ++... +
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~--------~~~~~~~~~~aDlVilavP~~~~-~~~~-~~l~~-l  165 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD--------WDRAEDILADAGMVIVSVPIHLT-EEVI-ARLPP-L  165 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc--------chhHHHHHhcCCEEEEeCcHHHH-HHHH-HHHhC-C
Confidence            447999999 99999999999999999999999753        13577889999999999997753 4455 33444 8


Q ss_pred             CCCcEEEEeCCCc
Q 042102          226 GPKGVLINIGRGL  238 (317)
Q Consensus       226 k~gavlVN~~rg~  238 (317)
                      ++|+++++++.-.
T Consensus       166 ~~~~iv~Dv~SvK  178 (374)
T PRK11199        166 PEDCILVDLTSVK  178 (374)
T ss_pred             CCCcEEEECCCcc
Confidence            9999999997754

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.61  E-value=3.6e-07  Score=89.16  Aligned_cols=132  Identities=11%  Similarity=0.143  Sum_probs=86.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------------------------CC-ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------------------------LN-YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------------------~~-~~~~~~l~el~~~aDvV  203 (317)
                      ++|||||+|.||..+|..|...|.+|++||+++...                        .+ .....++.+++++||+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            479999999999999999999999999999865421                        01 12335678889999999


Q ss_pred             EEeccCChhh------hccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHHHH-HhC-CceEEEeeC---CCCCCCCCc
Q 042102          204 VVACSLTEET------QHIV--NRQVINALGPKGVLINIGRGLLVDEHELVSAL-LQG-RLGGAGLDV---FEHEPDVPE  270 (317)
Q Consensus       204 ~~~lp~~~~t------~~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al-~~g-~i~ga~lDV---~~~EP~~~~  270 (317)
                      ++|+|.....      ..+.  .+...+.+++|.++|+.|.-.+=-.+.+.+.+ ++. .+. .+.|.   +.+|...+.
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~G  159 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLREG  159 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCCC
Confidence            9999965431      1121  13455678999999999865554555665444 431 111 12332   234443332


Q ss_pred             ----ccCCCCceEEc
Q 042102          271 ----ELIGLENVVLL  281 (317)
Q Consensus       271 ----~L~~~pnvi~t  281 (317)
                          .++..+.+++.
T Consensus       160 ~~~~~~~~~~~iv~G  174 (411)
T TIGR03026       160 NAVHDLLNPDRIVGG  174 (411)
T ss_pred             ChhhhhcCCCEEEEe
Confidence                35667777766

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.61  E-value=4.2e-07  Score=84.01  Aligned_cols=130  Identities=18%  Similarity=0.264  Sum_probs=85.5

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEe--CCCCCCC-----CCcc--ccCC-HHHhcccCCEEEEeccCChhhhccc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYN--SRTEKPN-----LNYK--YYPN-LIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~--~~~~~~~-----~~~~--~~~~-l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      .++|+|+|+|.||+.+|+.++..|..+.++  |++....     .+..  ...+ ..+.+..+|+|++++|-.. |..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~-~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA-TEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH-HHHHH
Confidence            368999999999999999999999977544  4443221     1211  1123 3677888999999999664 34444


Q ss_pred             cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC----CcccCCCCceEEcccCC
Q 042102          218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV----PEELIGLENVVLLPHVA  285 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~----~~~L~~~pnvi~tPH~a  285 (317)
                       ++.-..+|+|+++++++.-.---.++..+.+.+..      .+...-|..    ..+++..-.+++||.-.
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~  146 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEG  146 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCC
Confidence             45555899999999998755433334444433321      122333431    23788888999999643

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.60  E-value=3.6e-07  Score=85.00  Aligned_cols=98  Identities=21%  Similarity=0.261  Sum_probs=72.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  199 (317)
                      ++|+|||.|.||..+|..+...|.+|.+||++++...                +             .....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            5899999999999999999999999999998753210                1             11234554 5789


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEE-EeCCCcccCHHHHHHHHH
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSALL  250 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV-N~~rg~~vd~~aL~~al~  250 (317)
                      ||+|+.++|...+.+..+-++..+.++++++++ |++.-.   ...+.+.+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~  132 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATD  132 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC
Confidence            999999999887755544456667789999998 655543   345666653

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.59  E-value=2.4e-06  Score=84.84  Aligned_cols=211  Identities=15%  Similarity=0.207  Sum_probs=123.8

Q ss_pred             CCChhHHHHHHh-cCeEEEecCCCC-----hHHHHh--------hccCCceEEEEeCCCCCCHHHHhcCC-CceEEEECC
Q 042102           15 PVSNYLEQEIEK-SFKVFKLWHFED-----KEQFIN--------THKDSIQAVVGSAAAGADAELIESLP-KLEIVATCS   79 (317)
Q Consensus        15 ~~~~~~~~~l~~-~~~~~~~~~~~~-----~~~~~~--------~~~~~~~~ii~~~~~~~~~~~l~~~~-~Lk~i~~~~   79 (317)
                      ++.|+..++|.+ .|++..-.....     ++++.+        +.+.++|+|+-- . +.+.+.++.+. +--+|+...
T Consensus        16 AltP~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV-~-~P~~~e~~~l~~g~tli~~l~   93 (511)
T TIGR00561        16 AATPKTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKV-N-APSDAEIAELPAGKALVSFIW   93 (511)
T ss_pred             ccCHHHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEe-C-CCCHHHHHhcCCCCEEEEEcC
Confidence            356777777755 577764332111     233322        111246766531 2 23445566654 556677766


Q ss_pred             CCCCcCChhhHhhCCcEEEeCCCCC--c--------HHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCC
Q 042102           80 VGLDKIDLARCKEKGIRVANTPDVL--T--------DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGK  149 (317)
Q Consensus        80 ~G~d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~  149 (317)
                      ...|.=-++++.+++|++..-.-..  +        .++|+.+      .+|-+.+..+..  |.+..+.......+.+.
T Consensus        94 p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA------Gy~Avi~Aa~~l--gr~~~g~~taag~vp~a  165 (511)
T TIGR00561        94 PAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA------GYRAIIEAAHEF--GRFFTGQITAAGKVPPA  165 (511)
T ss_pred             ccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH------HHHHHHHHHHHh--hhhcCCceecCCCCCCC
Confidence            6665545688899999988733111  1        2233322      233332222221  11111100111245678


Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-----------------cCC----------HHHhc
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-----------------YPN----------LIDLA  197 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-----------------~~~----------l~el~  197 (317)
                      ++.|+|+|.+|...++.++.+|++|.+++++....     .+...                 ..+          +.+.+
T Consensus       166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~  245 (511)
T TIGR00561       166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQA  245 (511)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988765321     11110                 001          44567


Q ss_pred             ccCCEEEEec--cCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          198 SNCQILVVAC--SLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       198 ~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      +++|+|+.++  |..+. ..++.++.++.||+|+++||++-
T Consensus       246 ~~~DIVI~TalipG~~a-P~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       246 KEVDIIITTALIPGKPA-PKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             CCCCEEEECcccCCCCC-CeeehHHHHhhCCCCCEEEEeee
Confidence            8899998876  44332 35889999999999999999964

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.59  E-value=2e-07  Score=79.89  Aligned_cols=89  Identities=22%  Similarity=0.349  Sum_probs=74.1

Q ss_pred             ccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          144 TKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .++.|+++.|||.|.+ |..+++.|...|++|.+.+|+.         .++.+.++++|+|+++.+..    ++|.++. 
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~----~ii~~~~-  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP----GLVKGDM-  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC----ceecHHH-
Confidence            3689999999999996 8889999999999998888753         46888999999999998843    3688875 


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                        ++++.++||+|...-+|       ..++++.
T Consensus       106 --~~~~~viIDla~prdvd-------~~~~~~~  129 (168)
T cd01080         106 --VKPGAVVIDVGINRVPD-------KSGGKLV  129 (168)
T ss_pred             --ccCCeEEEEccCCCccc-------ccCCCee
Confidence              57899999999988777       4455554

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.59  E-value=5.1e-07  Score=83.28  Aligned_cols=127  Identities=15%  Similarity=0.237  Sum_probs=80.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CCcc-ccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LNYK-YYPNLIDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~~~-~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      ++|+|||+|.||+.+|+.|+..|.  +|.++++++...     .+.. ...+..++. +||+|++++|.... ..++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~-~~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAI-IEIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHH-HHHH-HH
Confidence            379999999999999999998775  788999875431     1221 234666765 49999999996553 3334 34


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCC---C---CCCCc-ccCCCCceEEcccC
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEH---E---PDVPE-ELIGLENVVLLPHV  284 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~---E---P~~~~-~L~~~pnvi~tPH~  284 (317)
                      ..+ +++++++++++.-    -..+.+.+.+.. .+..++..+.   |   |.... .+++-..++++|.-
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~  142 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVE  142 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence            555 8899999997552    234555554321 1123444433   1   21111 36666668888853

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.56  E-value=2.3e-07  Score=85.62  Aligned_cols=81  Identities=15%  Similarity=0.247  Sum_probs=69.3

Q ss_pred             cccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.|+++.|||.|.+ |+.++..|...|++|+++...         ..++.+.+++||+|+++++    +.++|+.+ 
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~~-  218 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTAD-  218 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCHH-
Confidence            34799999999999999 999999999999999886532         2468899999999999999    56788874 


Q ss_pred             HhccCCCcEEEEeCCCcc
Q 042102          222 INALGPKGVLINIGRGLL  239 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~  239 (317)
                        .+|+|+++||+|.-.+
T Consensus       219 --~ik~gavVIDVGin~~  234 (285)
T PRK14189        219 --MVKPGATVIDVGMNRD  234 (285)
T ss_pred             --HcCCCCEEEEcccccc
Confidence              4799999999997553

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.56  E-value=7.9e-07  Score=82.30  Aligned_cols=99  Identities=14%  Similarity=0.179  Sum_probs=72.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  199 (317)
                      ++|+|||.|.||..+|..+...|.+|.++|+++....                +             .....+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            4799999999999999999999999999997654220                0             01133454 4799


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      ||+|+.++|.+.+.+.-+-++..+.++++++++....|  +....+.+.+.
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~  131 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK  131 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence            99999999977776644445566678999988544444  55567777774

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.56  E-value=2.4e-07  Score=86.07  Aligned_cols=79  Identities=22%  Similarity=0.369  Sum_probs=66.7

Q ss_pred             ccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeC-CCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          144 TKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNS-RTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~-~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      .++.||+|+||| .|.+|+.+|.+|...|+.|.+|+ ++.          ++++++++||+|+++++...    ++.+..
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~  219 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW  219 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence            368999999999 99999999999999999999995 542          57899999999999999654    455443


Q ss_pred             HhccCCCcEEEEeCCCcc
Q 042102          222 INALGPKGVLINIGRGLL  239 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~  239 (317)
                         +|+|+++||+|--.+
T Consensus       220 ---lk~GavVIDvGin~~  234 (296)
T PRK14188        220 ---IKPGATVIDVGINRI  234 (296)
T ss_pred             ---ecCCCEEEEcCCccc
Confidence               899999999986543

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.55  E-value=5.3e-07  Score=79.47  Aligned_cols=105  Identities=15%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------CccccCCHHHhcc-cCCEEEEeccCChhhhc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------NYKYYPNLIDLAS-NCQILVVACSLTEETQH  215 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~-~aDvV~~~lp~~~~t~~  215 (317)
                      +.+++|++++|+|+|++|+.+|++|..+|++|+++|++.....      +.. ..+.++++. +||+++.+..     .+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~l~~~~~Dv~vp~A~-----~~   96 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPEEIYSVDADVFAPCAL-----GG   96 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcchhhccccCCEEEeccc-----cc
Confidence            3468999999999999999999999999999999998754321      222 123455554 7999886655     36


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +|+++.++.|+ ..+++.-+-+.+-| ..-.+.|++..+.
T Consensus        97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            89999999997 56778888888776 5666778888886

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.54  E-value=7.4e-07  Score=89.00  Aligned_cols=101  Identities=11%  Similarity=0.107  Sum_probs=74.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------------------------C-ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------------------------N-YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~el~~~aDvV  203 (317)
                      ++|||||.|.||..+|..+...|++|.+||+++....                        + .....++.+++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            4899999999999999999999999999998754311                        1 22356788999999999


Q ss_pred             EEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          204 VVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       204 ~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      +.++|...+.+..+-++.-+.++++++| .++..++ ....+.+.+..
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence            9999988776654434444557777654 4444443 35566666643

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.53  E-value=1.8e-06  Score=80.32  Aligned_cols=88  Identities=17%  Similarity=0.112  Sum_probs=72.4

Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCC----------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102          160 GTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG  229 (317)
Q Consensus       160 G~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  229 (317)
                      |+.||++|...|+.|.+||++....          .+.....+..+++++||+|++|+|..++++.++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            8999999999999999998765321          244456789999999999999999998888887 56888999999


Q ss_pred             EEEEeCCCcccCHHHHHHHHHh
Q 042102          230 VLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       230 vlVN~~rg~~vd~~aL~~al~~  251 (317)
                      ++||++.   ++.+.++..++.
T Consensus       111 IVID~ST---IsP~t~~~~~e~  129 (341)
T TIGR01724       111 VICNTCT---VSPVVLYYSLEK  129 (341)
T ss_pred             EEEECCC---CCHHHHHHHHHH
Confidence            9999966   556666666665

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.51  E-value=3.5e-07  Score=86.45  Aligned_cols=98  Identities=20%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C--------C------ccccCCHHHhcccCCEEEEecc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L--------N------YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~--------~------~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .++|+|||+|.||..+|.+|...|.+|.+|+|+++..     .        +      .....++.++++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            4589999999999999999999999999999864321     0        1      1234578888899999999999


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeCCC-cccC--HHHHHHHHHh
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIGRG-LLVD--EHELVSALLQ  251 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg-~~vd--~~aL~~al~~  251 (317)
                      ... +     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            663 2     5566888999999999997 3332  4456666654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.51  E-value=5.1e-07  Score=75.58  Aligned_cols=106  Identities=20%  Similarity=0.214  Sum_probs=78.0

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCC------Cc----cccCCHHHhcccCCEEEEeccCChh-
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNL------NY----KYYPNLIDLASNCQILVVACSLTEE-  212 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~----~~~~~l~el~~~aDvV~~~lp~~~~-  212 (317)
                      .+.+++++|+|.|.||+.+++.+...| .+|.+++++.....      ..    ....+..++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            366889999999999999999999886 68999998754321      11    1245677788999999999998764 


Q ss_pred             hhc-cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          213 TQH-IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       213 t~~-li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ... .+..   ..++++.+++|++..+.. . .+.+.+++..+.
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~  134 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGAK  134 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCc
Confidence            222 2333   236899999999876433 3 787888777654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.51  E-value=4.4e-07  Score=83.71  Aligned_cols=80  Identities=23%  Similarity=0.370  Sum_probs=66.8

Q ss_pred             cccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||+++|||. |.+|+.+|.+|...|++|.++...         ..++.+.+++||+|+++++..    +++....
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~----~~v~~~~  219 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRG----HFVTKEF  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCcc----ccCCHHH
Confidence            44799999999999 999999999999999999988321         136899999999999999944    4566654


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                         +|+|+++||+|--.
T Consensus       220 ---ik~GavVIDvgin~  233 (284)
T PRK14179        220 ---VKEGAVVIDVGMNR  233 (284)
T ss_pred             ---ccCCcEEEEeccee
Confidence               79999999998554

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.50  E-value=1.3e-06  Score=81.97  Aligned_cols=135  Identities=15%  Similarity=0.122  Sum_probs=83.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CC-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LN-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~el~~~  199 (317)
                      ++|+|||.|.||..+|..+...|.+|.+||+++...                .+             .....++.++++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999875311                11             1234678889999


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceE
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVV  279 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi  279 (317)
                      ||+|+.++|...+....+-++ ++.+.++..+|..+... .....+.+.+.....  ...|-+-+ |.     +-.|=+.
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts~-~~~~~la~~~~~~~~--~~~~hp~~-p~-----~~~~lve  152 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTSA-LLASAFTEHLAGRER--CLVAHPIN-PP-----YLIPVVE  152 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCCC-CCHHHHHHhcCCccc--EEEEecCC-Cc-----ccCceEE
Confidence            999999999876544333233 34443444444433333 345567777754332  23443332 21     1112356


Q ss_pred             EcccCCCccHHHHHH
Q 042102          280 LLPHVASATVETRKA  294 (317)
Q Consensus       280 ~tPH~a~~t~~~~~~  294 (317)
                      ++|+-+ .+.+..++
T Consensus       153 iv~~~~-t~~~~~~~  166 (308)
T PRK06129        153 VVPAPW-TAPATLAR  166 (308)
T ss_pred             EeCCCC-CCHHHHHH
Confidence            888744 33444443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.48  E-value=1.6e-06  Score=81.36  Aligned_cols=99  Identities=14%  Similarity=0.179  Sum_probs=69.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------C--------------ccccCCHHHhcccCCEEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------N--------------YKYYPNLIDLASNCQILV  204 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~--------------~~~~~~l~el~~~aDvV~  204 (317)
                      ++|+|||.|.||..+|..+...|++|.++|++.....          +              .....++++++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            5899999999999999999999999999997653210          0              112356778899999999


Q ss_pred             EeccCChhh-hccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          205 VACSLTEET-QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       205 ~~lp~~~~t-~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      +++|...+. ..++ ++.-..++++++++....|  +....+.+.+.
T Consensus        85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            999987643 3333 3333346677776544334  33557777664

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.48  E-value=3.8e-07  Score=84.14  Aligned_cols=98  Identities=14%  Similarity=0.208  Sum_probs=73.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC----EEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC----IIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ++|||||+|+||+++++.|...|.    +|++++|+....      .+.....+..+++++||+|++++|. .....++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence            589999999999999999987774    699999876432      2233345777889999999999994 5566655 


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      ++.-..++++.++|++.-|-  +.+.|.+.+.
T Consensus        81 ~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~  110 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAGK--SIKSTENEFD  110 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence            34445578889999998774  5556666664

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.48  E-value=1.6e-06  Score=80.62  Aligned_cols=99  Identities=17%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------------------Cc-------------cccCCHHHh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------------------NY-------------KYYPNLIDL  196 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~el  196 (317)
                      ++|+|||.|.||..+|..+...|++|.++|+++....                   +.             ....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            5899999999999999999999999999998754210                   00             012234 56


Q ss_pred             cccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       197 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      +++||+|+.++|...+...-+-++.-+.++++++|++...|-  ....+.+.+.
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~  134 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALE  134 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcC
Confidence            789999999999876544434344555678999998776663  4556766664

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.46  E-value=3.9e-07  Score=84.07  Aligned_cols=104  Identities=22%  Similarity=0.207  Sum_probs=77.6

Q ss_pred             cCCeEEEEecChhHHHHHHHHhh--CCCEEE-EeCCCCCCCC------C-ccccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA--FDCIIG-YNSRTEKPNL------N-YKYYPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~--~G~~V~-~~~~~~~~~~------~-~~~~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      ..++|||||+|.||+.+++.+..  .++++. +++++++...      + ...+.+++++++++|+|++|+|.... .  
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~--   81 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-R--   81 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-H--
Confidence            34799999999999999999985  478875 6787654321      1 13457899999999999999996533 1  


Q ss_pred             ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                        +-....++.|.-++..+.|.+.+.++|.++.+++...
T Consensus        82 --e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         82 --AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             --HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence              1123345667777778899888889999998887665

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.46  E-value=9.6e-07  Score=78.51  Aligned_cols=113  Identities=17%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHh---cccCCEEEEeccCChhhhccccHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDL---ASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el---~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      +++|.||+|+||..++++|+.-|.+|++||+++...     .+.....+++++   +...-+|-+++|...-|..+| .+
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence            479999999999999999999999999999987542     233345566665   566789999999887777766 45


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEH  264 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~  264 (317)
                      .-..|.+|-++|+-+...--|....++.|++..|.  .+||=.+
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS  121 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS  121 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence            66778999999999988888888888999999997  8898543

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.45  E-value=6.6e-07  Score=82.73  Aligned_cols=100  Identities=18%  Similarity=0.231  Sum_probs=72.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCCCC-------CCccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEKPN-------LNYKYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~-------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+++|||||+|+||+++++.|...|    .+|.+++|+....       .+.....+..+++++||+|++++|... ...
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~-~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD-VAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH-HHH
Confidence            3579999999999999999998877    6788999865321       133345678888999999999999544 333


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      ++ ......++++.++|++.-|-  ..+.+.+.+.
T Consensus        81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~  112 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ  112 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence            33 34445578899999986553  5556666554

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.45  E-value=2.3e-07  Score=84.93  Aligned_cols=90  Identities=17%  Similarity=0.241  Sum_probs=76.1

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      .+.||.+.|.|||.+|+..|+.|++||++|++....+-..     .++ ...+++|+.++.|+++.+.-    .+++|..
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~-~V~tm~ea~~e~difVTtTG----c~dii~~  285 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGY-EVTTLEEAIREVDIFVTTTG----CKDIITG  285 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhcc-EeeeHHHhhhcCCEEEEccC----CcchhhH
Confidence            4689999999999999999999999999999987655432     223 35689999999999888755    5778999


Q ss_pred             HHHhccCCCcEEEEeCCCcc
Q 042102          220 QVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~  239 (317)
                      ++|.+||+++++-|+|.-.+
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHHhCcCCcEEeccccccc
Confidence            99999999999999987654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.44  E-value=1.1e-06  Score=81.60  Aligned_cols=98  Identities=18%  Similarity=0.256  Sum_probs=72.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------Cc-------------cccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------NY-------------KYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~el~~~  199 (317)
                      ++|||||.|.||..+|..+...|++|..||+++....                +.             ....++ +.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            3899999999999999999999999999998765311                00             023456 55899


Q ss_pred             CCEEEEeccCChhhhccccHHHHhcc-CCCcEEEEeCCCcccCHHHHHHHH
Q 042102          200 CQILVVACSLTEETQHIVNRQVINAL-GPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~m-k~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      ||+|+-++|.+.+.+.-+-.+.-+.+ ++++++++.+.+-.+.  .+..++
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~  133 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAAT  133 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhc
Confidence            99999999999998876655444445 8899998876665443  344443

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.43  E-value=1.4e-06  Score=84.24  Aligned_cols=123  Identities=9%  Similarity=0.072  Sum_probs=84.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----C-----------------Cccc--cCCHHHhcccCCEEEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----L-----------------NYKY--YPNLIDLASNCQILVV  205 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~-----------------~~~~--~~~l~el~~~aDvV~~  205 (317)
                      ++|+|||+|.||..+|..++ .|++|+++|+++...    .                 ....  ..+..++++.||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            47999999999999997766 599999999875431    0                 0111  2235677899999999


Q ss_pred             eccCCh----------hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCc----c
Q 042102          206 ACSLTE----------ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE----E  271 (317)
Q Consensus       206 ~lp~~~----------~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~----~  271 (317)
                      |+|..-          ..+..+ +.... +++|.++|+.|.-.+=-.+.+.+.+.+..+.      +.+|...+.    .
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d  151 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD  151 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence            999652          112222 23333 7999999999998877777888777654332      466665443    4


Q ss_pred             cCCCCceEE
Q 042102          272 LIGLENVVL  280 (317)
Q Consensus       272 L~~~pnvi~  280 (317)
                      +...|++++
T Consensus       152 ~~~p~rvv~  160 (388)
T PRK15057        152 NLHPSRIVI  160 (388)
T ss_pred             ccCCCEEEE
Confidence            666666654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.42  E-value=1.6e-06  Score=86.68  Aligned_cols=112  Identities=21%  Similarity=0.334  Sum_probs=81.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  199 (317)
                      ++|||||.|.||+.||..+...|+.|.+||++++...                +             .....++++ ++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            5899999999999999999999999999998765311                1             122356655 569


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHh-CCceEEEeeCCCCCC
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVL-INIGRGLLVDEHELVSALLQ-GRLGGAGLDVFEHEP  266 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~-g~i~ga~lDV~~~EP  266 (317)
                      ||+|+-++|.+.+.+..+-++.-..+++++++ .|+|.-++   ..+..++.. .++  .++..|.+-|
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~  150 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVP  150 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCcc
Confidence            99999999999998876655555567899999 59987665   356665543 233  4566665444

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.41  E-value=9.3e-07  Score=81.69  Aligned_cols=79  Identities=15%  Similarity=0.313  Sum_probs=67.6

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      ..+.|+++.|||.|. +|+.+|..|...|++|+++.+..         .++.+.+++||+|+++++.    .++|.++. 
T Consensus       154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~-  219 (286)
T PRK14175        154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV-  219 (286)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH-
Confidence            469999999999999 99999999999999998887532         3688999999999999984    45788765 


Q ss_pred             hccCCCcEEEEeCCCc
Q 042102          223 NALGPKGVLINIGRGL  238 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~  238 (317)
                        +|+|+++||+|-..
T Consensus       220 --vk~gavVIDvGi~~  233 (286)
T PRK14175        220 --VKEGAVIIDVGNTP  233 (286)
T ss_pred             --cCCCcEEEEcCCCc
Confidence              68999999998654

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.39  E-value=6.1e-07  Score=84.29  Aligned_cols=90  Identities=18%  Similarity=0.278  Sum_probs=68.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C--------------CccccCCHHHhcccCCEEEEeccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L--------------NYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~--------------~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ++|+|||+|.||..+|..|...|.+|.+|++++...     .              +.....++++.++.||+|++++|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            479999999999999999999999999999864321     0              122345777888999999999996


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                       ..+..++ +...+.+++++++|+++.|--.
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence             4555555 3455667889999999765433

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.37  E-value=3.3e-07  Score=74.85  Aligned_cols=104  Identities=18%  Similarity=0.318  Sum_probs=60.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ...+|||||.|++|..+++.|...|+.|. +++|+....      .+.....++++++..+|++++++|++. ...+ .+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~v-a~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEV-AE   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHH-HH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHH-HH
Confidence            34699999999999999999999999886 556765321      122334578899999999999999874 3332 23


Q ss_pred             HHHhc--cCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102          220 QVINA--LGPKGVLINIGRGLLVDEHELVSALLQGRL  254 (317)
Q Consensus       220 ~~l~~--mk~gavlVN~~rg~~vd~~aL~~al~~g~i  254 (317)
                      +.-..  .++|.+++-|| |. ...+-|..+-+.|-+
T Consensus        87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga~  121 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGAI  121 (127)
T ss_dssp             HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-E
T ss_pred             HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCCe
Confidence            33333  68999999984 22 222334444444443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.35  E-value=1.5e-06  Score=86.86  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=81.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  199 (317)
                      ++|||||.|.||+.||..+...|+.|.+||++++...                +             .....++++ ++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            5799999999999999999999999999998754311                1             112456655 579


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEE-EeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP  266 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV-N~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP  266 (317)
                      ||+|+.++|.+.+.+..+-.+.-+.++++++|. |+|.-++   ..+.+.+. ...+..++..|.+-|
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~-~p~r~~G~HFf~Pap  148 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLA-RPERVAGLHFFNPAP  148 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcC-cccceEEEeccCccc
Confidence            999999999988877765555556678888876 6665443   45666664 233445677666544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.34  E-value=4.1e-06  Score=87.52  Aligned_cols=131  Identities=16%  Similarity=0.185  Sum_probs=88.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCC-----CCcc--ccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPN-----LNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~-----~~~~--~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|||||+|.||+++++.++..|  .+|.++|++....     .+..  ...++.++++++|+|++++|.. .+..++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  4799999876432     1221  2346788899999999999964 344444 3


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC----------CcccCCCCceEEcccCCC
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV----------PEELIGLENVVLLPHVAS  286 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~----------~~~L~~~pnvi~tPH~a~  286 (317)
                      +..+.++++.++++++.-...-.+.+.+.+....+     .+..+-|..          ...|+.-.+++++|+-..
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET  153 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence            34455788999999987543334455555433222     223333321          125788889999997543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.31  E-value=4.8e-07  Score=74.68  Aligned_cols=94  Identities=20%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      +++|+++.|||.|.+|+.++..|...|++ |.+++|+.++..         .  .....++.+.+.++|+|+.+.|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999995 999999865321         0  12345666778999999999886543


Q ss_pred             hhccccHHHHhccCCCc-EEEEeCCCcccC
Q 042102          213 TQHIVNRQVINALGPKG-VLINIGRGLLVD  241 (317)
Q Consensus       213 t~~li~~~~l~~mk~ga-vlVN~~rg~~vd  241 (317)
                         .+.++.++..++.. ++++.+...-|+
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             ---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence               67888887765543 888887654443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.31  E-value=5e-07  Score=80.32  Aligned_cols=127  Identities=13%  Similarity=0.156  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH--hhCCCEEE-EeCCCCC
Q 042102          106 DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA--EAFDCIIG-YNSRTEK  182 (317)
Q Consensus       106 ~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l--~~~G~~V~-~~~~~~~  182 (317)
                      ...++|.+..++...|++..         |.          ..++++|||+|.+|+.+++.+  ...|+++. ++|+.+.
T Consensus        61 ~~~~gy~v~~l~~~~~~~l~---------~~----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~  121 (213)
T PRK05472         61 KRGVGYNVEELLEFIEKILG---------LD----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE  121 (213)
T ss_pred             CCCCCeeHHHHHHHHHHHhC---------CC----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence            44456888888888888751         11          235899999999999999863  46788875 5666443


Q ss_pred             CCC----C--ccccCCHHHhccc--CCEEEEeccCChh---hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          183 PNL----N--YKYYPNLIDLASN--CQILVVACSLTEE---TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       183 ~~~----~--~~~~~~l~el~~~--aDvV~~~lp~~~~---t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      ...    +  .....++.+++++  .|.+++++|.+..   ...+.......-|...++.+|+.+|.+|+.++|..+|..
T Consensus       122 ~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~  201 (213)
T PRK05472        122 KIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT  201 (213)
T ss_pred             hcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence            221    1  1123457777755  9999999998765   222333333445667788999999999999999998874

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.29  E-value=4e-06  Score=63.65  Aligned_cols=67  Identities=27%  Similarity=0.351  Sum_probs=56.5

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhC-CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAF-DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      ..+.+++++|+|.|.+|+.++..+... +.+|.++++                     |+++.+.+.    .+++.++..
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~   73 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT   73 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence            347889999999999999999999988 568888887                     999999874    345666678


Q ss_pred             hccCCCcEEEEeC
Q 042102          223 NALGPKGVLINIG  235 (317)
Q Consensus       223 ~~mk~gavlVN~~  235 (317)
                      ..+++++++++++
T Consensus        74 ~~~~~~~~v~~~a   86 (86)
T cd05191          74 AKINEGAVVIDLA   86 (86)
T ss_pred             HhcCCCCEEEecC
Confidence            8899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.29  E-value=1.7e-06  Score=78.98  Aligned_cols=98  Identities=12%  Similarity=0.208  Sum_probs=71.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC---EEEEeCCCCCCC------C-CccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC---IIGYNSRTEKPN------L-NYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~------~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ++|||||+|+||+.+++.|...|.   .+.+++|+....      . +.....+..++++++|+|++++| ......++.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~   79 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR   79 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence            379999999999999999987775   357888865432      1 22345678888999999999999 344454443


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      .  + .+++|.++|.+.  .-+..+.|.+.+..+
T Consensus        80 ~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         80 A--L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             H--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            2  2 257899999987  336777787777653

>PRK07680 late competence protein ComER; Validated

Probab=98.27  E-value=1.8e-06  Score=79.52  Aligned_cols=98  Identities=12%  Similarity=0.236  Sum_probs=71.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC----EEEEeCCCCCCC-------CCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC----IIGYNSRTEKPN-------LNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~-------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      ++|||||+|.||+.+++.|...|.    +|.+++|+.+..       .+.....+..+++.++|+|++++|.. ....++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHH
Confidence            379999999999999999988773    789999875432       12333467888899999999999733 344444


Q ss_pred             cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          218 NRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                       ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence             3444567788999999855  36666766554

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.27  E-value=2.3e-06  Score=84.47  Aligned_cols=100  Identities=11%  Similarity=0.138  Sum_probs=85.6

Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCC----------CccccCCHHHhccc---CCEEEEeccCChhhhccccHHHHhcc
Q 042102          159 IGTAIAKRAEAFDCIIGYNSRTEKPNL----------NYKYYPNLIDLASN---CQILVVACSLTEETQHIVNRQVINAL  225 (317)
Q Consensus       159 iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el~~~---aDvV~~~lp~~~~t~~li~~~~l~~m  225 (317)
                      ||+.||++|...|++|.+|||++.+..          +.....+++++++.   +|+|++++|..+.++.++ ...++.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            799999999999999999999865321          24456789988774   899999999999999988 4688899


Q ss_pred             CCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       226 k~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      .+|.++||++....-|...+.+.+++..+.  .+|.
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~--fvda  113 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIH--FIGM  113 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCe--EEec
Confidence            999999999999999999999999998887  4553

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.25  E-value=3.9e-06  Score=73.72  Aligned_cols=86  Identities=21%  Similarity=0.214  Sum_probs=64.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-CC------C-ccccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-NL------N-YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-~~------~-~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      ++++|+|.|+||..+|+++...|.+|.+-+++... ..      + .....+.++..+.+|+|++++|...-..  +.++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~--v~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD--VLAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh--HHHH
Confidence            58999999999999999999999999877554332 11      1 1234578899999999999999765322  3355


Q ss_pred             HHhccCCCcEEEEeCCC
Q 042102          221 VINALGPKGVLINIGRG  237 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg  237 (317)
                      ....++ |.++|++.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            666666 8999998653

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.23  E-value=3.4e-05  Score=76.88  Aligned_cols=210  Identities=13%  Similarity=0.225  Sum_probs=121.4

Q ss_pred             CChhHHHHHHh-cCeEEEecCCCC-----hHHHHh---------hccCCceEEEEeCCCCCCHHHHhcCC-CceEEEECC
Q 042102           16 VSNYLEQEIEK-SFKVFKLWHFED-----KEQFIN---------THKDSIQAVVGSAAAGADAELIESLP-KLEIVATCS   79 (317)
Q Consensus        16 ~~~~~~~~l~~-~~~~~~~~~~~~-----~~~~~~---------~~~~~~~~ii~~~~~~~~~~~l~~~~-~Lk~i~~~~   79 (317)
                      +.|+..++|.+ .|++..-.....     ++++.+         +.+ ++|+|+-- . ..+.+.++.++ .--+|+...
T Consensus        18 ltP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV-~-~P~~~e~~~l~~g~~li~~l~   94 (509)
T PRK09424         18 ATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKV-N-APSDDEIALLREGATLVSFIW   94 (509)
T ss_pred             cCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEe-C-CCCHHHHHhcCCCCEEEEEeC
Confidence            56777777755 577765332111     333322         112 46766632 1 23455566665 455677776


Q ss_pred             CCCCcCChhhHhhCCcEEEeCCCCC--c--------HHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCC
Q 042102           80 VGLDKIDLARCKEKGIRVANTPDVL--T--------DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGK  149 (317)
Q Consensus        80 ~G~d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~  149 (317)
                      ...|.=-++.+.++||++..-.-.-  +        .++|+.+      .+|-+.+..+..  +....+.........|.
T Consensus        95 p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA------Gy~Av~~aa~~~--~~~~~g~~taaG~~pg~  166 (509)
T PRK09424         95 PAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA------GYRAVIEAAHEF--GRFFTGQITAAGKVPPA  166 (509)
T ss_pred             cccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh------HHHHHHHHHHHh--cccCCCceeccCCcCCC
Confidence            6666555688899999887722211  0        1222221      222222222221  11111100111245799


Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc--c-----------------CC--------HHHhc
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY--Y-----------------PN--------LIDLA  197 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~--~-----------------~~--------l~el~  197 (317)
                      +|.|+|.|.+|...+..++.+|++|.++|+++...     .+...  .                 .+        +.+.+
T Consensus       167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~  246 (509)
T PRK09424        167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA  246 (509)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence            99999999999999999999999999999875431     12110  0                 01        11223


Q ss_pred             ccCCEEEEeccCChh-hhccccHHHHhccCCCcEEEEeCC
Q 042102          198 SNCQILVVACSLTEE-TQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       198 ~~aDvV~~~lp~~~~-t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      +++|+|+.+...... ...++.++.++.||+|+++|++|-
T Consensus       247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            579999988764321 223557899999999999999974

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.21  E-value=5.6e-06  Score=70.25  Aligned_cols=81  Identities=19%  Similarity=0.345  Sum_probs=59.1

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|+.|..+....         .++++.+++||+|+.+..    ..++|..+.
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G----~~~~i~~~~   97 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVG----KPNLIKADW   97 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SS----STT-B-GGG
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeec----ccccccccc
Confidence            3469999999999995 99999999999999998876432         478999999999999987    356777654


Q ss_pred             HhccCCCcEEEEeCCCcc
Q 042102          222 INALGPKGVLINIGRGLL  239 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~  239 (317)
                         +|+|+++||+|.-..
T Consensus        98 ---ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   98 ---IKPGAVVIDVGINYV  112 (160)
T ss_dssp             ---S-TTEEEEE--CEEE
T ss_pred             ---ccCCcEEEecCCccc
Confidence               599999999987665

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.19  E-value=9e-06  Score=75.20  Aligned_cols=102  Identities=15%  Similarity=0.257  Sum_probs=71.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCCCC-------C-CccccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEKPN-------L-NYKYYPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~-------~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      .+|+|||+|.||+.+++.+...|    .+|.+++++....       . ......+..++++++|+|++++|.. ....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHH
Confidence            47999999999999999998777    5788888754221       1 1122457788899999999999933 23333


Q ss_pred             ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102          217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRL  254 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i  254 (317)
                      + .+....++++..+|.+.-|  +..+.|.+.+...++
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v  115 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV  115 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence            3 3333456778899999877  666677776643333

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.19  E-value=2.5e-06  Score=72.24  Aligned_cols=87  Identities=20%  Similarity=0.295  Sum_probs=62.6

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------------C------CccccCCHHHhcccCCEEEEeccCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------------L------NYKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~------~~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      +|+|+|.|+.|.++|..|...|.+|..|.++++..             .      ......+++++++.+|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            68999999999999999999999999999874310             1      1123468999999999999999954


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      .. +.+ -++....++++..+|++..|=
T Consensus        81 ~~-~~~-~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 AH-REV-LEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             GH-HHH-HHHHTTTSHTT-EEEETS-SE
T ss_pred             HH-HHH-HHHHhhccCCCCEEEEecCCc
Confidence            32 333 345556678899999998663

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.18  E-value=1.2e-06  Score=74.94  Aligned_cols=92  Identities=16%  Similarity=0.317  Sum_probs=66.4

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CC-----c---------------------cccCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LN-----Y---------------------KYYPN  192 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~-----~---------------------~~~~~  192 (317)
                      ..+...+|.|+|.|++|+..++.++++|++|..+|......     ..     .                     .....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            45778999999999999999999999999999888654311     00     0                     01124


Q ss_pred             HHHhcccCCEEEEe-ccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          193 LIDLASNCQILVVA-CSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       193 l~el~~~aDvV~~~-lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      +.+.++.+|+|+.+ +-..+..-.++.++.++.||+|++++|++
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            67889999998864 44555667799999999999999999985

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.15  E-value=1.3e-05  Score=74.04  Aligned_cols=79  Identities=19%  Similarity=0.305  Sum_probs=65.9

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .++.|+++.|||.|. +|+.++..|...|++|+++...         ..++.+.+++||+|+.+++-    .+++..+. 
T Consensus       155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvi~avG~----p~~v~~~~-  220 (285)
T PRK10792        155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------TKNLRHHVRNADLLVVAVGK----PGFIPGEW-  220 (285)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------CCCHHHHHhhCCEEEEcCCC----cccccHHH-
Confidence            469999999999999 9999999999999999887643         23689999999999999852    24676644 


Q ss_pred             hccCCCcEEEEeCCCc
Q 042102          223 NALGPKGVLINIGRGL  238 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~  238 (317)
                        +|+|+++||+|--.
T Consensus       221 --vk~gavVIDvGin~  234 (285)
T PRK10792        221 --IKPGAIVIDVGINR  234 (285)
T ss_pred             --cCCCcEEEEccccc
Confidence              68999999998543

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=9e-06  Score=75.07  Aligned_cols=80  Identities=18%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             cccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.|++|.|||-| .+|+.+|..|...|+.|.++...         ..++.+.+++||+|+++++    ..+++..++
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~---------t~~l~~~~~~ADIvV~AvG----~p~~i~~~~  218 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL---------TKDLSFYTQNADIVCVGVG----KPDLIKASM  218 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC---------cHHHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence            347899999999999 99999999999999999887432         2357899999999999987    456788877


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                      +   |+|+++||+|-..
T Consensus       219 v---k~GavVIDvGi~~  232 (285)
T PRK14191        219 V---KKGAVVVDIGINR  232 (285)
T ss_pred             c---CCCcEEEEeeccc
Confidence            5   8999999998654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.12  E-value=1.3e-05  Score=72.03  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=98.1

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCE---EEEeCCCC----CCCC-----------Cc---cccCCHHHhcccCCE
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCI---IGYNSRTE----KPNL-----------NY---KYYPNLIDLASNCQI  202 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~---V~~~~~~~----~~~~-----------~~---~~~~~l~el~~~aDv  202 (317)
                      ..+.++++.|+|.|.+|+.++..|...|++   |+.+||+.    ....           ..   ....++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            357889999999999999999999999984   88999872    2110           00   011367788889999


Q ss_pred             EEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCC-ceEEEeeCCCCCCCCCcccCCCCceEEc
Q 042102          203 LVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGR-LGGAGLDVFEHEPDVPEELIGLENVVLL  281 (317)
Q Consensus       203 V~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~-i~ga~lDV~~~EP~~~~~L~~~pnvi~t  281 (317)
                      |+.+.|     .++++++.++.|+++.+++..+..  ..|.-+.++.+.|- |..-+.   .      --..+..|+++-
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~---~------~~~~Q~nn~~~f  164 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR---S------DFPNQVNNVLGF  164 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC---C------CCccccceeeec
Confidence            999876     477889999999999999888833  34444444444433 232221   1      124577899999


Q ss_pred             ccCCCccHH-----HHHHHHHHHHHHHHHHH
Q 042102          282 PHVASATVE-----TRKAMADLVVGNLQAHF  307 (317)
Q Consensus       282 PH~a~~t~~-----~~~~~~~~~~~nl~~~~  307 (317)
                      |=++-..-.     .-+.|...+++.|-++.
T Consensus       165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~  195 (226)
T cd05311         165 PGIFRGALDVRATKITEEMKLAAAEAIADLA  195 (226)
T ss_pred             chhhHHHHHcCCcCCCHHHHHHHHHHHHhhC
Confidence            987642221     12445455555555444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.10  E-value=3.6e-06  Score=77.58  Aligned_cols=90  Identities=18%  Similarity=0.264  Sum_probs=71.3

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------C------ccccCCHHHhcccCCEEEEe--ccCC
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------N------YKYYPNLIDLASNCQILVVA--CSLT  210 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~------~~~~~~l~el~~~aDvV~~~--lp~~  210 (317)
                      .+..-+|.|+|.|.+|...|+.+.++|.+|...|.+.+...      +      ......+++.+.++|+|+-+  +|..
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            46667899999999999999999999999999988754321      1      11124588999999999876  4443


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      + .-.++.++++++||||+++||++
T Consensus       245 k-aPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         245 K-APKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             C-CceehhHHHHHhcCCCcEEEEEE
Confidence            3 34578899999999999999985

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=9.2e-06  Score=74.78  Aligned_cols=80  Identities=19%  Similarity=0.292  Sum_probs=67.6

Q ss_pred             cccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.|+++.|+|.+ ..|+.+|..+..+|++|..+....         .++.+.+++||+|+.+++..    +++.++.
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk~----~lv~~~~  213 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGKA----GFITPDM  213 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCcc----cccCHHH
Confidence            347999999999999 999999999999999998765432         36899999999999999632    6788887


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                      +   |+|+++||+|-..
T Consensus       214 v---k~GavVIDVgi~~  227 (279)
T PRK14178        214 V---KPGATVIDVGINQ  227 (279)
T ss_pred             c---CCCcEEEEeeccc
Confidence            5   9999999998544

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=1.3e-05  Score=73.93  Aligned_cols=79  Identities=19%  Similarity=0.319  Sum_probs=66.1

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.|+++.|||.|. +|+.+|..|...|++|.++...         ..++.+..++||+|++++.-    .+++.++ 
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvv~AvG~----p~~i~~~-  224 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------TDDLKKYTLDADILVVATGV----KHLIKAD-  224 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------CCCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence            3478999999999999 9999999999999999887642         23689999999999998763    3577766 


Q ss_pred             HhccCCCcEEEEeCCC
Q 042102          222 INALGPKGVLINIGRG  237 (317)
Q Consensus       222 l~~mk~gavlVN~~rg  237 (317)
                        .+|+|+++||+|--
T Consensus       225 --~vk~gavVIDvGin  238 (287)
T PRK14176        225 --MVKEGAVIFDVGIT  238 (287)
T ss_pred             --HcCCCcEEEEeccc
Confidence              46899999999864

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.08  E-value=2.9e-05  Score=67.65  Aligned_cols=89  Identities=11%  Similarity=0.197  Sum_probs=67.0

Q ss_pred             cccccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCC------CCCcccc--CC----HHHhcccCCEEEEec
Q 042102          141 KMTTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKP------NLNYKYY--PN----LIDLASNCQILVVAC  207 (317)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~------~~~~~~~--~~----l~el~~~aDvV~~~l  207 (317)
                      +.+.++.||++.|||-+. +|+.+|..|...|++|+.++.+.-.      .......  .+    +.+.+++||+|++++
T Consensus        55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv  134 (197)
T cd01079          55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV  134 (197)
T ss_pred             ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence            346789999999999986 5899999999999999988532210      0000111  12    789999999999999


Q ss_pred             cCChhhhcc-ccHHHHhccCCCcEEEEeCC
Q 042102          208 SLTEETQHI-VNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       208 p~~~~t~~l-i~~~~l~~mk~gavlVN~~r  236 (317)
                      +    ..++ +..+.+   |+|+++||+|-
T Consensus       135 G----~~~~~i~~d~i---k~GavVIDVGi  157 (197)
T cd01079         135 P----SPNYKVPTELL---KDGAICINFAS  157 (197)
T ss_pred             C----CCCCccCHHHc---CCCcEEEEcCC
Confidence            8    4466 777664   89999999984

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=1.7e-05  Score=73.60  Aligned_cols=80  Identities=16%  Similarity=0.276  Sum_probs=66.2

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.|+++.|+|.|. +|++++..|...|++|.++++.         ..++.+.++++|+|+.+++ .   .+++..+.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG-~---~~~v~~~~  220 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVG-K---PELIKKDW  220 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccC-C---CCcCCHHH
Confidence            3468999999999998 9999999999999999888762         2367888899999999996 2   23677655


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                         +|+|++++|++-..
T Consensus       221 ---lk~gavViDvg~n~  234 (283)
T PRK14192        221 ---IKQGAVVVDAGFHP  234 (283)
T ss_pred             ---cCCCCEEEEEEEee
Confidence               69999999998544

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.07  E-value=3.7e-05  Score=63.85  Aligned_cols=80  Identities=15%  Similarity=0.192  Sum_probs=66.8

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.|+++.|+|-+. +|+.++..|...|++|..++...         .++++.+++||+|+++.+..    ++|..+.
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~   89 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW   89 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence            4579999999999875 68999999999999998887532         36889999999999998854    5688766


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                         +|||++++|++...
T Consensus        90 ---ikpGa~Vidvg~~~  103 (140)
T cd05212          90 ---IKPGATVINCSPTK  103 (140)
T ss_pred             ---cCCCCEEEEcCCCc
Confidence               68999999998655

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.05  E-value=1e-05  Score=70.50  Aligned_cols=132  Identities=9%  Similarity=0.094  Sum_probs=76.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------------CCC-------------ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------------NLN-------------YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------------~~~-------------~~~~~~l~el~~~aDvV  203 (317)
                      |+|+|+|+|.+|..+|..+...|++|+++|.+++.            +.+             .....+.++.+++||++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            58999999999999999999999999999976431            000             11345678889999999


Q ss_pred             EEeccCChhhhcccc--------HHHHhccCCCcEEEEeCCCcccCHH-HHHHHHHhCCceEEEee-CCCCCCCCCc---
Q 042102          204 VVACSLTEETQHIVN--------RQVINALGPKGVLINIGRGLLVDEH-ELVSALLQGRLGGAGLD-VFEHEPDVPE---  270 (317)
Q Consensus       204 ~~~lp~~~~t~~li~--------~~~l~~mk~gavlVN~~rg~~vd~~-aL~~al~~g~i~ga~lD-V~~~EP~~~~---  270 (317)
                      ++|+|-...-.+-.|        +...+.++++.++|.-|.-.+=-.+ -+...|++..-...-++ +|.+|-..+.   
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~  160 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI  160 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence            999984332232222        3455668999999999887664444 33445554332110111 1556655442   


Q ss_pred             -ccCCCCceEE
Q 042102          271 -ELIGLENVVL  280 (317)
Q Consensus       271 -~L~~~pnvi~  280 (317)
                       .+...|++++
T Consensus       161 ~d~~~~~rvV~  171 (185)
T PF03721_consen  161 EDFRNPPRVVG  171 (185)
T ss_dssp             HHHHSSSEEEE
T ss_pred             hhccCCCEEEE
Confidence             5778888875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.03  E-value=7.3e-06  Score=80.17  Aligned_cols=94  Identities=19%  Similarity=0.214  Sum_probs=70.1

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCC------Cc--cccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNL------NY--KYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+.|++|+|+|.|.||+.+++.|+..| .+|.+++|+.....      +.  ....++.+.+.++|+|+.+++.   +..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence            478999999999999999999999999 58999998764321      11  1124567788999999999663   356


Q ss_pred             cccHHHHhccC----CCcEEEEeCCCcccC
Q 042102          216 IVNRQVINALG----PKGVLINIGRGLLVD  241 (317)
Q Consensus       216 li~~~~l~~mk----~gavlVN~~rg~~vd  241 (317)
                      +++++.++.+.    .+.+++|.+...=+|
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            78888887652    245899998644343

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.02  E-value=1.9e-05  Score=72.67  Aligned_cols=102  Identities=19%  Similarity=0.231  Sum_probs=69.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--CCEE-EEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--DCII-GYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V-~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|||||+|.||+.+++.+...  ++++ .++|++....      .+...+.++++++.++|+|+.|.|.....     +
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~-----~   76 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVE-----E   76 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHH-----H
Confidence            4899999999999999998765  5664 5688765421      12234578999989999999998743221     1


Q ss_pred             HHHhccCCCcEEEEeCCCcccCH---HHHHHHHHhCCce
Q 042102          220 QVINALGPKGVLINIGRGLLVDE---HELVSALLQGRLG  255 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~---~aL~~al~~g~i~  255 (317)
                      -....++.|.-++..+.|.+.|.   +.|.++.+++...
T Consensus        77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence            12234556666677888887764   4666666666544

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.97  E-value=4.7e-05  Score=69.73  Aligned_cols=99  Identities=19%  Similarity=0.217  Sum_probs=74.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCCCCC------CccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEKPNL------NYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ++|||||+|+||++++.-|..-|    .+|++.+|+.+...      +.....+.+++..++|+|++++.  |+    .-
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence            58999999999999999999888    47999998875432      12225677899999999999977  32    22


Q ss_pred             HHHHhccC---CCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          219 RQVINALG---PKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       219 ~~~l~~mk---~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++.++.++   ++.++|.++-|  |..+.|.+.+.+.++.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vv  113 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVV  113 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCceE
Confidence            55666666   68999999877  4556777777644443

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.97  E-value=1.7e-05  Score=72.89  Aligned_cols=85  Identities=15%  Similarity=0.220  Sum_probs=66.4

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      -|.||||+|||||.-|++=|..|+..|.+|++=-|.....      .++ ...+.+|++++||+|.+.+|...+.. +..
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf-~V~~v~ea~k~ADvim~L~PDe~q~~-vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGF-KVYTVEEAAKRADVVMILLPDEQQKE-VYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCC-EeecHHHHhhcCCEEEEeCchhhHHH-HHH
Confidence            5899999999999999999999999999986544433221      222 35689999999999999999765533 556


Q ss_pred             HHHHhccCCCcEE
Q 042102          219 RQVINALGPKGVL  231 (317)
Q Consensus       219 ~~~l~~mk~gavl  231 (317)
                      ++.-..||+|+.+
T Consensus        93 ~~I~p~Lk~G~aL  105 (338)
T COG0059          93 KEIAPNLKEGAAL  105 (338)
T ss_pred             HHhhhhhcCCceE
Confidence            6777788988854

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.00025  Score=67.57  Aligned_cols=153  Identities=13%  Similarity=0.198  Sum_probs=114.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CCccccCCHHHh---cccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYYPNLIDL---ASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el---~~~aDvV~~~lp~~~~t~~  215 (317)
                      ..+|+||+|.||+.+|......|++|.+|+|+..+.          .....+.+++|+   ++.-.-|++++-....+..
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            469999999999999999999999999999987542          112234566665   6777888888776533344


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHH
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAM  295 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~  295 (317)
                      +| +..+..|.+|-++|+-|...--|...-.++|.+..|...+.-|-..|-..-.    =|  -+   +-|.+.++++++
T Consensus        84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~----GP--Si---MpGG~~eay~~v  153 (473)
T COG0362          84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARH----GP--SI---MPGGQKEAYELV  153 (473)
T ss_pred             HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccccc----CC--Cc---CCCCCHHHHHHH
Confidence            44 5678889999999999999999999999999999999999999887753211    11  12   237788998888


Q ss_pred             HHHHHHHHHHHHCCCCC
Q 042102          296 ADLVVGNLQAHFGKKPL  312 (317)
Q Consensus       296 ~~~~~~nl~~~~~g~~~  312 (317)
                      .. +++.|.+-..|+|=
T Consensus       154 ~p-il~~IaAk~~g~pC  169 (473)
T COG0362         154 AP-ILTKIAAKVDGEPC  169 (473)
T ss_pred             HH-HHHHHHhhcCCCCc
Confidence            66 44555555556653

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=5.2e-05  Score=69.99  Aligned_cols=80  Identities=23%  Similarity=0.378  Sum_probs=66.8

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|++|+.+...         ..++.+..++||+|++++.    ..+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------T~~l~~~~~~ADIvI~AvG----~~~~i~~~~  218 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------TKDLPQVAKEADILVVATG----LAKFVKKDY  218 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence            4579999999999986 6999999999999999877532         1368999999999999988    446788776


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                      +   |+|+++||+|--.
T Consensus       219 v---k~GavVIDvGin~  232 (284)
T PRK14170        219 I---KPGAIVIDVGMDR  232 (284)
T ss_pred             c---CCCCEEEEccCcc
Confidence            4   8999999998655

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.96  E-value=3.5e-05  Score=73.38  Aligned_cols=90  Identities=14%  Similarity=0.094  Sum_probs=70.3

Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCC----------CCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102          160 GTAIAKRAEAFDCIIGYNSRTEKP----------NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG  229 (317)
Q Consensus       160 G~~~a~~l~~~G~~V~~~~~~~~~----------~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  229 (317)
                      |..+|.+|...|.+|.+||++...          ..+.....+..+++++||+|++++|....++.++ ......+++|+
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            889999999999999999987641          1233345678888999999999999766577776 46777889999


Q ss_pred             EEEEeCCCcccCH-HHHHHHHH
Q 042102          230 VLINIGRGLLVDE-HELVSALL  250 (317)
Q Consensus       230 vlVN~~rg~~vd~-~aL~~al~  250 (317)
                      ++||++.+..... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999876655 55666664

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.95  E-value=1.8e-05  Score=72.41  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC---CEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD---CIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|+|||+|.||+.+++.+...|   .+|.+++|+.+..      .+.....+.++++.++|+|++++|... .+.++ +
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~-~~~v~-~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV-MEEVL-S   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH-HHHHH-H
Confidence            58999999999999999998888   6889999875432      122334577888899999999998432 33333 2


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      .....+  +.++|++.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            222223  46788886654  5566666554

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.95  E-value=3.7e-05  Score=70.41  Aligned_cols=97  Identities=27%  Similarity=0.443  Sum_probs=64.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      .++|||||+|+||+++++.+..-|    -++.+++++.... +.....+..+++.+||+|++++|.. .+..++. +...
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavkp~-~~~~vl~-~i~~   79 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVKPD-LAGKVLL-EIKP   79 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeCHH-HHHHHHH-HHHh
Confidence            468999999999999999998765    2488888765432 2233456778889999999998833 3444443 3333


Q ss_pred             ccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          224 ALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      .++++ .+|.+.-|  +..+.+.+.+.
T Consensus        80 ~l~~~-~iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         80 YLGSK-LLISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             hccCC-EEEEEeCC--ccHHHHHHHcC
Confidence            44544 45665544  33555555543

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.94  E-value=3.7e-05  Score=70.84  Aligned_cols=80  Identities=15%  Similarity=0.287  Sum_probs=66.7

Q ss_pred             cccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-| .+|+.+|.+|...|++|..+...         ..++.+..++||+|++++.    ..+++..++
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~  218 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF---------TKDLKAHTKKADIVIVGVG----KPNLITEDM  218 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CcCHHHHHhhCCEEEEecC----cccccCHHH
Confidence            347999999999999 88999999999999999876432         2368899999999999987    456788776


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                      +   |+|+++||+|--.
T Consensus       219 v---k~gavvIDvGin~  232 (281)
T PRK14183        219 V---KEGAIVIDIGINR  232 (281)
T ss_pred             c---CCCcEEEEeeccc
Confidence            4   8999999998544

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.92  E-value=1.7e-05  Score=70.81  Aligned_cols=89  Identities=16%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------------Cc---cccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------------NY---KYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~---~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+||| .|.||+.+++.|...|.+|.+++|+++...             +.   ....+..+.++++|+|++++|...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            4799997 899999999999999999998888753210             10   112356788999999999999553


Q ss_pred             hhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          212 ETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      - ..++ ++.-..++ +.++|++.-|--.
T Consensus        81 ~-~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        81 V-LKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             H-HHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            2 2233 22222343 5899999766433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.91  E-value=2.1e-05  Score=73.92  Aligned_cols=91  Identities=20%  Similarity=0.302  Sum_probs=63.6

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC------CCcc--ccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN------LNYK--YYPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~------~~~~--~~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      +.|++|+|+|.|.||+.+++.++..|. +|.+++|++...      .+..  ...++.+.+.++|+|+.+.|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            689999999999999999999998774 788999876432      1111  123466778899999999986543 222


Q ss_pred             ccHHHHhcc-CCCcEEEEeCCCc
Q 042102          217 VNRQVINAL-GPKGVLINIGRGL  238 (317)
Q Consensus       217 i~~~~l~~m-k~gavlVN~~rg~  238 (317)
                       .+..++.. +++.++||++...
T Consensus       255 -~~~~~~~~~~~~~~viDlavPr  276 (311)
T cd05213         255 -VERAMKKRSGKPRLIVDLAVPR  276 (311)
T ss_pred             -HHHHHhhCCCCCeEEEEeCCCC
Confidence             23333332 3577888888543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=6.7e-05  Score=69.34  Aligned_cols=113  Identities=20%  Similarity=0.311  Sum_probs=82.9

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.+|..|...|++|+.+...         ..++.+.+++||+|+.++.    ..++|..++
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~  219 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVG----KPKLITADM  219 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence            3479999999999875 6999999999999999887532         2368899999999999986    446888887


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET  291 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~  291 (317)
                      +   |+|+++||+|.-.+.          +|++   .=||-..      ...+. --.+||.-||...-.
T Consensus       220 i---k~gavVIDvGi~~~~----------~gkl---~GDvd~e------~v~~~-a~~iTPVPGGVGpvT  266 (284)
T PRK14190        220 V---KEGAVVIDVGVNRLE----------NGKL---CGDVDFD------NVKEK-ASYITPVPGGVGPMT  266 (284)
T ss_pred             c---CCCCEEEEeeccccC----------CCCe---eccCcHH------HHhhh-ceEecCCCCCChHHH
Confidence            6   899999999876532          3444   3455211      11112 236899877766543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.89  E-value=1.9e-05  Score=68.45  Aligned_cols=97  Identities=16%  Similarity=0.229  Sum_probs=66.7

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CC-------------ccccCCHHHhcccC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LN-------------YKYYPNLIDLASNC  200 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~el~~~a  200 (317)
                      +|+|||.|.||+.+|..+...|++|..+|+++...                .+             .....+++++. .|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            69999999999999999999999999999876421                00             11246788888 99


Q ss_pred             CEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      |+|+=++|-+-+.+.-+-++.-+.++++++|...+.+  .....|...+
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~  126 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAAL  126 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTS
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhcc
Confidence            9999999988877755556666678899998655333  4444565555

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=8.1e-05  Score=68.83  Aligned_cols=79  Identities=22%  Similarity=0.389  Sum_probs=65.7

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .++.||++.|||-+. +|+.++..|...|++|..+...         ..++.+..++||+|++++.    -.+++..+.+
T Consensus       155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------T~~L~~~~~~ADIvV~AvG----kp~~i~~~~v  221 (288)
T PRK14171        155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------THNLSSITSKADIVVAAIG----SPLKLTAEYF  221 (288)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CCCccCHHHc
Confidence            468999999999985 6999999999999999877532         2368999999999999988    3468888764


Q ss_pred             hccCCCcEEEEeCCCc
Q 042102          223 NALGPKGVLINIGRGL  238 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~  238 (317)
                         |+|+++||+|--.
T Consensus       222 ---k~GavVIDvGin~  234 (288)
T PRK14171        222 ---NPESIVIDVGINR  234 (288)
T ss_pred             ---CCCCEEEEeeccc
Confidence               8999999998533

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=9.1e-05  Score=68.86  Aligned_cols=118  Identities=19%  Similarity=0.251  Sum_probs=84.0

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|++|..+...         ..++.+..++||+|+++++    ..+++..++
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~  219 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------TQDLASITREADILVAAAG----RPNLIGAEM  219 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            3479999999999885 6999999999999999887532         2368899999999999988    346788776


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETR  292 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~  292 (317)
                         .|+|+++||+|--.+.+.+      .+|++   .=||-..      ...+. --.+||--||...-..
T Consensus       220 ---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~------~v~~~-a~~iTPVPGGVGp~T~  271 (297)
T PRK14186        220 ---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFE------EVEPV-AAAITPVPGGVGPMTV  271 (297)
T ss_pred             ---cCCCCEEEEeccccccccc------cCCce---eCCccHH------HHHhh-ceEecCCCCCchHHHH
Confidence               4899999999866543211      13444   3455321      11222 2368998787665443

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.87  E-value=2.2e-05  Score=76.96  Aligned_cols=91  Identities=16%  Similarity=0.246  Sum_probs=66.9

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------C--ccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------N--YKYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+.|++|+|+|.|.||+.+++.|+..|+ +|.+++|+.....      +  .....++.+.+.++|+|+.+.+..   ..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence            3789999999999999999999999998 7999998764321      1  111234567788999999997644   34


Q ss_pred             cccHHHHhcc-----CCCcEEEEeCCCc
Q 042102          216 IVNRQVINAL-----GPKGVLINIGRGL  238 (317)
Q Consensus       216 li~~~~l~~m-----k~gavlVN~~rg~  238 (317)
                      ++.++.++.+     +.+.++||++-..
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~Pr  283 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAVPR  283 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence            5677777654     2457888887533

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=6.6e-05  Score=69.29  Aligned_cols=113  Identities=25%  Similarity=0.337  Sum_probs=81.7

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.+|..|...|++|+.+....         .++.+..++||+|+++++    ..+++..++
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG----~p~~i~~~~  217 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVG----VPHFIGADA  217 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            3468999999999985 69999999999999998775321         368899999999999988    456788876


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET  291 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~  291 (317)
                         +|+|+++||+|--.+.          +|++   .-||-..+      .... --.+||-=||...-.
T Consensus       218 ---vk~GavVIDvGin~~~----------~gkl---~GDVd~~~------v~~~-a~~iTPVPGGVGp~T  264 (282)
T PRK14169        218 ---VKPGAVVIDVGISRGA----------DGKL---LGDVDEAA------VAPI-ASAITPVPGGVGPMT  264 (282)
T ss_pred             ---cCCCcEEEEeeccccC----------CCCe---eecCcHHH------HHhh-ccEecCCCCCcHHHH
Confidence               5899999999864432          3454   34553211      1111 237899777755433

>PLN00203 glutamyl-tRNA reductase

Probab=97.85  E-value=2.2e-05  Score=78.61  Aligned_cols=91  Identities=16%  Similarity=0.307  Sum_probs=68.8

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------Cc----cccCCHHHhcccCCEEEEeccCChh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------NY----KYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------~~----~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ++.+++|+|||.|.||+.+++.|...|+ +|++++|+.....       +.    ....++.+.+.++|+|+++.|.   
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s---  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS---  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence            3779999999999999999999999997 6999998864321       11    1224567789999999998763   


Q ss_pred             hhccccHHHHhccCCC-------cEEEEeCCCc
Q 042102          213 TQHIVNRQVINALGPK-------GVLINIGRGL  238 (317)
Q Consensus       213 t~~li~~~~l~~mk~g-------avlVN~~rg~  238 (317)
                      ...+|.++.++.++++       -+|||.+=..
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            3557888888877432       4788887543

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.84  E-value=8.9e-05  Score=66.90  Aligned_cols=101  Identities=15%  Similarity=0.215  Sum_probs=66.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCC---CE-EEEeCCC-CCCC------CCccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFD---CI-IGYNSRT-EKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G---~~-V~~~~~~-~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+++|||||.|.+|+.+++.+...|   .+ +++++++ .+..      .+.....+.+++++++|+|++++|... .+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-HEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-HHH
Confidence            3578999999999999999987665   33 6667664 2221      122334678889999999999999542 233


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      ++ ++.-..++ +.++|+++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            33 22222233 6789999766  4555666666443

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=0.00013  Score=67.15  Aligned_cols=79  Identities=19%  Similarity=0.353  Sum_probs=66.3

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .++.||++.|||-+. +|+.++..|...|++|+.+...         ..++.+..++||+|+++++    -.++|.+++ 
T Consensus       154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~-  219 (278)
T PRK14172        154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------TKNLKEVCKKADILVVAIG----RPKFIDEEY-  219 (278)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCccCHHH-
Confidence            469999999999885 6999999999999999887642         2368999999999999988    446788877 


Q ss_pred             hccCCCcEEEEeCCCc
Q 042102          223 NALGPKGVLINIGRGL  238 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~  238 (317)
                        .|+|+++||+|--.
T Consensus       220 --ik~gavVIDvGin~  233 (278)
T PRK14172        220 --VKEGAIVIDVGTSS  233 (278)
T ss_pred             --cCCCcEEEEeeccc
Confidence              58999999997544

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=8.8e-05  Score=68.47  Aligned_cols=80  Identities=13%  Similarity=0.261  Sum_probs=66.7

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.+|..|...|++|+.+....         .++.+..++||+|++++.    -.+++.++.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvG----kp~~i~~~~  218 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAG----CVNLLRSDM  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence            3469999999999985 69999999999999998776432         368999999999999988    456788876


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                         .|+|+++||+|--.
T Consensus       219 ---vk~GavVIDvGin~  232 (282)
T PRK14166        219 ---VKEGVIVVDVGINR  232 (282)
T ss_pred             ---cCCCCEEEEecccc
Confidence               48999999998543

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=9.9e-05  Score=68.14  Aligned_cols=80  Identities=19%  Similarity=0.295  Sum_probs=66.7

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|++|+.+...         ..++.+..++||+|++++.    ..+++..++
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------T~~l~~~~~~ADIvIsAvG----k~~~i~~~~  220 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------TQNLPSIVRQADIIVGAVG----KPEFIKADW  220 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEeCC----CcCccCHHH
Confidence            3479999999999985 6999999999999999987642         2368899999999999988    456788776


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                      +   |+|+++||+|--.
T Consensus       221 i---k~gavVIDvGin~  234 (284)
T PRK14177        221 I---SEGAVLLDAGYNP  234 (284)
T ss_pred             c---CCCCEEEEecCcc
Confidence            4   8999999998543

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.79  E-value=9.8e-05  Score=69.56  Aligned_cols=84  Identities=17%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhh-CC-CEEEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA-FD-CIIGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      ..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|++.+..         +  .....++++++++||+|+++.|..   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            46799999999999999986553 55 47999999865421         1  223467889999999998877744   


Q ss_pred             hccccHHHHhccCCCcEEEEeCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ..++..+   .+++|+.+.-++.
T Consensus       201 ~pvl~~~---~l~~g~~i~~ig~  220 (314)
T PRK06141        201 EPLVRGE---WLKPGTHLDLVGN  220 (314)
T ss_pred             CCEecHH---HcCCCCEEEeeCC
Confidence            4566654   4689995544444

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.79  E-value=8.9e-05  Score=70.26  Aligned_cols=103  Identities=16%  Similarity=0.234  Sum_probs=71.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCc-----------------cccCCHHHhcccCCEEEEec
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNY-----------------KYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~-----------------~~~~~l~el~~~aDvV~~~l  207 (317)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....    .+.                 ....+. +.++.+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence            579999999999999999999999999998854211    010                 012233 5678999999999


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      |... ...++ +...+.++++.++|.+.-| +-..+.+.+.+...++.
T Consensus        82 k~~~-~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         82 KSAA-TADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL  126 (341)
T ss_pred             cCcc-hHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence            8653 34444 4455667889999888654 44456676766655543

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.78  E-value=0.0001  Score=68.55  Aligned_cols=134  Identities=16%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|++|+.+...         ..++++..++||+|++++.-    .+++..+.
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~  228 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------TPDPESIVREADIVIAAAGQ----AMMIKGDW  228 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            3479999999999986 6999999999999999987542         23689999999999999863    36888876


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhC-CceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQG-RLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVV  300 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g-~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~  300 (317)
                         .|+|+++||+|--.+-+.     ...+| +   ..-||...+      ..+. --.+||--||...-...-+.+.++
T Consensus       229 ---vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~------v~~~-a~~iTPVPGGVGp~T~a~L~~N~v  290 (299)
T PLN02516        229 ---IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAE------VSKV-AGWITPVPGGVGPMTVAMLLKNTV  290 (299)
T ss_pred             ---cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHH------hhhh-ceEecCCCCCchHHHHHHHHHHHH
Confidence               489999999986443221     11123 3   345654211      1111 135899777766544433334444


Q ss_pred             HHHHHHH
Q 042102          301 GNLQAHF  307 (317)
Q Consensus       301 ~nl~~~~  307 (317)
                      +-.++++
T Consensus       291 ~a~~~~~  297 (299)
T PLN02516        291 DGAKRVF  297 (299)
T ss_pred             HHHHHHh
Confidence            3334433

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.78  E-value=8.1e-05  Score=70.23  Aligned_cols=80  Identities=15%  Similarity=0.311  Sum_probs=66.5

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.+|..|...|++|..+....         .++.+..++||+|++++.    ..+++..+.
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvG----kp~~v~~d~  275 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAG----IPNLVRGSW  275 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            4479999999999986 59999999999999998775322         368899999999999988    456788876


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                      +   |+|+++||+|--.
T Consensus       276 v---k~GavVIDVGin~  289 (345)
T PLN02897        276 L---KPGAVVIDVGTTP  289 (345)
T ss_pred             c---CCCCEEEEccccc
Confidence            4   8999999998644

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.77  E-value=0.00011  Score=67.83  Aligned_cols=79  Identities=16%  Similarity=0.299  Sum_probs=66.0

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|++|..+....         .++.+..++||+|+++++    ..++|.+++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvG----kp~~i~~~~  219 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVG----KPNFITADM  219 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccC----CcCcCCHHH
Confidence            4469999999999885 69999999999999998875422         368889999999999988    446788866


Q ss_pred             HhccCCCcEEEEeCCC
Q 042102          222 INALGPKGVLINIGRG  237 (317)
Q Consensus       222 l~~mk~gavlVN~~rg  237 (317)
                         .|+|+++||+|--
T Consensus       220 ---vk~gavVIDvGin  232 (282)
T PRK14180        220 ---VKEGAVVIDVGIN  232 (282)
T ss_pred             ---cCCCcEEEEeccc
Confidence               4899999999853

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.77  E-value=0.00011  Score=67.89  Aligned_cols=134  Identities=19%  Similarity=0.243  Sum_probs=89.2

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|++|+.+....         .++.+..++||+|++++.    ..+++..++
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~  216 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVG----RPHLITPEM  216 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence            4479999999999875 69999999999999998775422         368899999999999987    346888877


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVG  301 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~  301 (317)
                      +   |+|+++||+|--.+.++        .|+. ...=||- .+      ..... -.+||-=||...-...-+.+.+++
T Consensus       217 v---k~GavVIDVGin~~~~~--------~gk~-~l~GDVd-~~------v~~~a-~~iTPVPGGVGp~T~a~L~~N~~~  276 (287)
T PRK14173        217 V---RPGAVVVDVGINRVGGN--------GGRD-ILTGDVH-PE------VAEVA-GALTPVPGGVGPMTVAMLMANTVI  276 (287)
T ss_pred             c---CCCCEEEEccCccccCC--------CCce-eeecccc-Hh------HHhhC-cEEecCCCChhHHHHHHHHHHHHH
Confidence            5   89999999997654321        3441 1244554 11      11111 268887677554433333333333


Q ss_pred             HHHHHHCC
Q 042102          302 NLQAHFGK  309 (317)
Q Consensus       302 nl~~~~~g  309 (317)
                      -.++...|
T Consensus       277 a~~~~~~~  284 (287)
T PRK14173        277 AALRRRGG  284 (287)
T ss_pred             HHHHHccC
Confidence            33333333

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.77  E-value=0.00037  Score=69.23  Aligned_cols=132  Identities=9%  Similarity=0.081  Sum_probs=85.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--CCEEEEeCCCCCCC------------CC------------ccccCCHHHhcccCCE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--DCIIGYNSRTEKPN------------LN------------YKYYPNLIDLASNCQI  202 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~------------~~------------~~~~~~l~el~~~aDv  202 (317)
                      ++|+|||+|.+|..+|..|...  |.+|+++|..+..-            .+            .....+..+.++.||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            5899999999999999999865  68899998754321            00            1123456778899999


Q ss_pred             EEEeccCChh-----------hhccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee-CCCCCCCC
Q 042102          203 LVVACSLTEE-----------TQHIV--NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD-VFEHEPDV  268 (317)
Q Consensus       203 V~~~lp~~~~-----------t~~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD-V~~~EP~~  268 (317)
                      +++|+|....           ...+.  .+..-+.+++|.++|.-|.-.+=-.+.+.+.+.+.. .|.-+. ++.+|-+.
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~  160 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA  160 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence            9999863221           11221  134455679999999988866555567777766521 111111 24566554


Q ss_pred             Cc----ccCCCCceEEc
Q 042102          269 PE----ELIGLENVVLL  281 (317)
Q Consensus       269 ~~----~L~~~pnvi~t  281 (317)
                      +.    .+...|++++-
T Consensus       161 ~G~a~~d~~~p~riViG  177 (473)
T PLN02353        161 EGTAIEDLFKPDRVLIG  177 (473)
T ss_pred             CCCcccccCCCCEEEEc
Confidence            42    57788888753

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.76  E-value=0.00012  Score=67.67  Aligned_cols=81  Identities=17%  Similarity=0.370  Sum_probs=66.1

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhC----CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAF----DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      +.++.||++.|||-+. +|+.+|..|...    ++.|+.+...         ..++.+.+++||+|+++++    ..+++
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------T~~l~~~~~~ADIvV~AvG----~p~~i  214 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------SENLTEILKTADIIIAAIG----VPLFI  214 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence            3468999999999985 699999999887    7888876532         2368999999999999987    34678


Q ss_pred             cHHHHhccCCCcEEEEeCCCcc
Q 042102          218 NRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      ..+++   |+|+++||+|--.+
T Consensus       215 ~~~~i---k~GavVIDvGin~~  233 (287)
T PRK14181        215 KEEMI---AEKAVIVDVGTSRV  233 (287)
T ss_pred             CHHHc---CCCCEEEEeccccc
Confidence            88774   89999999986553

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=0.00012  Score=67.82  Aligned_cols=80  Identities=21%  Similarity=0.351  Sum_probs=66.9

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|++|+.+....         .++.+..++||+|++++.    ..+++..++
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvG----kp~~i~~~~  221 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVG----IPNFVKYSW  221 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            3469999999999985 69999999999999998876422         368899999999999988    446788877


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                      +   |+|+++||+|--.
T Consensus       222 i---k~gaiVIDVGin~  235 (294)
T PRK14187        222 I---KKGAIVIDVGINS  235 (294)
T ss_pred             c---CCCCEEEEecccc
Confidence            5   7999999998644

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.74  E-value=0.00044  Score=66.07  Aligned_cols=139  Identities=17%  Similarity=0.269  Sum_probs=90.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------------C------------C-ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------------L------------N-YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~------------~-~~~~~~l~el~~~aDvV  203 (317)
                      .+|||||+|-||-.+|..+...|++|+++|-+++.-            .            + .....+.++ ++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence            699999999999999999999999999999765321            0            0 011233333 5599999


Q ss_pred             EEeccC--Ch----hhhcccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC--CceEEEeeC---CCCCCCCC-
Q 042102          204 VVACSL--TE----ETQHIVN--RQVINALGPKGVLINIGRGLLVDEHELVSALLQG--RLGGAGLDV---FEHEPDVP-  269 (317)
Q Consensus       204 ~~~lp~--~~----~t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g--~i~ga~lDV---~~~EP~~~-  269 (317)
                      ++|+|-  +.    +.-.+.+  +..-+.||+|.++|==|.-.+=-.+.++.-|.+.  .+. ..-|+   +.+|---| 
T Consensus        89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~PG  167 (436)
T COG0677          89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLPG  167 (436)
T ss_pred             EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCCC
Confidence            999883  21    1111111  3345579999999988887776677777776553  233 22453   45665333 


Q ss_pred             c---ccCCCCceEEcccCCCccHHHHHH
Q 042102          270 E---ELIGLENVVLLPHVASATVETRKA  294 (317)
Q Consensus       270 ~---~L~~~pnvi~tPH~a~~t~~~~~~  294 (317)
                      +   .+.+.|+|     +||.|..+.+.
T Consensus       168 ~~~~el~~~~kV-----IgG~tp~~~e~  190 (436)
T COG0677         168 NVLKELVNNPKV-----IGGVTPKCAEL  190 (436)
T ss_pred             chhhhhhcCCce-----eecCCHHHHHH
Confidence            2   46677877     47777665443

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.71  E-value=0.00014  Score=68.90  Aligned_cols=95  Identities=11%  Similarity=0.118  Sum_probs=64.5

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCCccc-cCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKY-YPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~-~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .+.|+++.|||.|.||+.+++.|...|. +|++.+|+.... .+.. .....+...++|+|+++..-|.....++..+.+
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~  249 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESL  249 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHH
Confidence            5889999999999999999999999996 699999987531 1110 011225568999999874434444456666666


Q ss_pred             hccCCCcEEEEeCCCcccC
Q 042102          223 NALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd  241 (317)
                      +..++ -+|||.+=..=||
T Consensus       250 ~~~~~-r~~iDLAvPRdId  267 (338)
T PRK00676        250 ADIPD-RIVFDFNVPRTFP  267 (338)
T ss_pred             hhccC-cEEEEecCCCCCc
Confidence            55332 3777776444333

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.69  E-value=7.3e-05  Score=69.19  Aligned_cols=108  Identities=15%  Similarity=0.156  Sum_probs=70.3

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCCC----c------cccCCHHHhcccCCEEEEeccCChhh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNLN----Y------KYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~----~------~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      .+.++++.|+|.|.+|++++..|...| .+|.+++|+.+....    .      ....++.+.+.++|+|+.++|..-..
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~  199 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence            578899999999999999999999999 589999997643210    0      00113356778899999999965321


Q ss_pred             hccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102          214 QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRL  254 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i  254 (317)
                      ..-...-.+..++++.+++++.-.+ ..+ .|+++.++..+
T Consensus       200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~  238 (278)
T PRK00258        200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQGA  238 (278)
T ss_pred             CCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCcC
Confidence            1001111234567788888886543 233 44444444433

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.69  E-value=0.00019  Score=66.17  Aligned_cols=79  Identities=18%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .++.||++.|||-+. +|+.++.+|...|++|..+...         ..++.+..++||+|+++++    ..++|..+++
T Consensus       153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------T~nl~~~~~~ADIvI~AvG----k~~~i~~~~i  219 (282)
T PRK14182        153 VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------TADLAGEVGRADILVAAIG----KAELVKGAWV  219 (282)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHHc
Confidence            468999999999985 6999999999999999887542         2368899999999999987    3567888764


Q ss_pred             hccCCCcEEEEeCCCc
Q 042102          223 NALGPKGVLINIGRGL  238 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~  238 (317)
                         |+|+++||+|--.
T Consensus       220 ---k~gaiVIDvGin~  232 (282)
T PRK14182        220 ---KEGAVVIDVGMNR  232 (282)
T ss_pred             ---CCCCEEEEeecee
Confidence               8999999998654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.68  E-value=0.00031  Score=65.20  Aligned_cols=103  Identities=16%  Similarity=0.172  Sum_probs=70.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCc-----------cccCCHHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNY-----------KYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~-----------~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ++|+|||.|.||+.+|..|...|.+|..++++....     .+.           ....+..++ +.+|+|++++|.. +
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            479999999999999999999999999988743321     111           112345555 8999999999954 3


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +..++ +.....+.+++.+|....| +-.++.+.+.+...++.
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            34333 3344456677888888776 33355666666555554

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.68  E-value=0.00013  Score=66.95  Aligned_cols=113  Identities=22%  Similarity=0.319  Sum_probs=83.8

Q ss_pred             cccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.+++|+++.|||-++| |+.++..|...+++|.++....         .++.+..++||+|++++-    -.++|..+.
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d~  217 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKADM  217 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Ccccccccc
Confidence            34799999999999985 8999999999999999886432         478899999999999977    346777655


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET  291 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~  291 (317)
                         .|+|+++|++|--.+-+          +++.   -||-..+       ...-.-.+||--||...-.
T Consensus       218 ---vk~gavVIDVGinrv~~----------~kl~---GDVdf~~-------v~~~a~~iTPVPGGVGPmT  264 (283)
T COG0190         218 ---VKPGAVVIDVGINRVND----------GKLV---GDVDFDS-------VKEKASAITPVPGGVGPMT  264 (283)
T ss_pred             ---ccCCCEEEecCCccccC----------CceE---eeccHHH-------HHHhhcccCCCCCccCHHH
Confidence               58999999998655433          5554   4654322       2222336888878776543

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.68  E-value=0.00037  Score=65.16  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=91.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhc-ccCCEEEEeccCChhhhccccHHHH
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLA-SNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      -.+|||||+|++|+-.|+.+...|+.|..++|+.-..    .+...+..+.+++ .+.|+|++|+... .+..++-.--+
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilatypf  130 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATYPF  130 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhcCc
Confidence            4589999999999999999999999999999976322    2334566777776 4599999987633 24444433346


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC-CCcccCCCCceEEcccCC
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPD-VPEELIGLENVVLLPHVA  285 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~-~~~~L~~~pnvi~tPH~a  285 (317)
                      +.+|.|++++++-.-....-+++.+-|-+.--.-..=-.|  .|. .++.+..+|=|+.-=.++
T Consensus       131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmf--GPksvnh~wqglpfVydkvRig  192 (480)
T KOG2380|consen  131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMF--GPKSVNHEWQGLPFVYDKVRIG  192 (480)
T ss_pred             hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCc--CCCcCCCccccCceEEEEeecc
Confidence            6789999999998877777777777664432211111112  232 234566788776665544

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.67  E-value=0.00015  Score=63.34  Aligned_cols=94  Identities=15%  Similarity=0.087  Sum_probs=59.3

Q ss_pred             ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------Cc-------cccCCHHHhcccCCEEEE
Q 042102          144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------NY-------KYYPNLIDLASNCQILVV  205 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~-------~~~~~l~el~~~aDvV~~  205 (317)
                      ..++++++.|+|. |.+|+.+++.+...|.+|..++|+.....          +.       ....++.+.++++|+|+.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            3578899999996 99999999999999999998888653210          00       001223456777887777


Q ss_pred             eccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          206 ACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       206 ~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      +.|....+  .+.  .-...+++.+++|+.+...++
T Consensus       104 at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~  135 (194)
T cd01078         104 AGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVG  135 (194)
T ss_pred             CCCCCcee--chh--hhcccCceeEEEEccCCCCCC
Confidence            77654321  111  111234466677766655443

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.67  E-value=0.00017  Score=68.46  Aligned_cols=80  Identities=19%  Similarity=0.313  Sum_probs=66.7

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|++|..+...         ..++.+..++||+|+.++.    ..+++..+.
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------T~nl~~~~r~ADIVIsAvG----kp~~i~~d~  292 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITREADIIISAVG----QPNMVRGSW  292 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCcCCHHH
Confidence            3469999999999985 6999999999999999887532         2468999999999999987    456788877


Q ss_pred             HhccCCCcEEEEeCCCc
Q 042102          222 INALGPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~  238 (317)
                      +   |+|+++||+|--.
T Consensus       293 v---K~GAvVIDVGIn~  306 (364)
T PLN02616        293 I---KPGAVVIDVGINP  306 (364)
T ss_pred             c---CCCCEEEeccccc
Confidence            4   8999999998544

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.66  E-value=0.00016  Score=67.30  Aligned_cols=104  Identities=13%  Similarity=0.223  Sum_probs=70.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC----CCCc-------------cccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP----NLNY-------------KYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~----~~~~-------------~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+|+|.|.+|..+|..|...|.+|..++|....    ..+.             ....+.++....+|+|++++|...
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~   80 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ   80 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC
Confidence            47999999999999999999999999988872110    0010             012345666789999999999543


Q ss_pred             hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                       +..++ +.....++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        81 -~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         81 -LDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             -HHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence             33333 3334446778888887665 34466777777655544

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.66  E-value=0.00021  Score=66.09  Aligned_cols=112  Identities=18%  Similarity=0.288  Sum_probs=82.1

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhh--CCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEA--FDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      +.++.||++.|||-+. +|+.++..|..  .+++|..+...         ..++.+..++||+|++++.    ..+++..
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvG----kp~~i~~  219 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAG----VAHLVTA  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecC----CcCccCH
Confidence            4479999999999875 69999999987  78999887542         2368999999999999988    3467888


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET  291 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~  291 (317)
                      +++   |+|+++||+|.-.+          .+|++   .-||- .+      ..... -.+||-=||...-.
T Consensus       220 ~~i---k~GavVIDvGin~~----------~~gkl---~GDvd-~~------v~~~a-~~iTPVPGGVGp~T  267 (284)
T PRK14193        220 DMV---KPGAAVLDVGVSRA----------GDGKL---VGDVH-PD------VWEVA-GAVSPNPGGVGPMT  267 (284)
T ss_pred             HHc---CCCCEEEEcccccc----------CCCcE---EeecC-Hh------HHhhC-CEEeCCCCChhHHH
Confidence            774   89999999986553          24554   44654 11      11222 26899877766433

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.60  E-value=0.00023  Score=66.15  Aligned_cols=79  Identities=16%  Similarity=0.357  Sum_probs=64.1

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhh----CCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEA----FDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      .++.||++.|||-+. +|+.++..|..    .|++|..+....         .++.+.+++||+|+.+++..    ++|.
T Consensus       155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~~----~li~  221 (295)
T PRK14174        155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGKA----RFIT  221 (295)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCcc----CccC
Confidence            469999999999985 69999999876    578887665322         35899999999999999532    6788


Q ss_pred             HHHHhccCCCcEEEEeCCCc
Q 042102          219 RQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~  238 (317)
                      ++++   |+|+++||+|-..
T Consensus       222 ~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        222 ADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             HHHc---CCCCEEEEeeccc
Confidence            8887   9999999998544

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.60  E-value=0.002  Score=57.91  Aligned_cols=104  Identities=15%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-----------------CCC----c--cccCCHHHh-ccc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-----------------NLN----Y--KYYPNLIDL-ASN  199 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-----------------~~~----~--~~~~~l~el-~~~  199 (317)
                      .++.|++|+|.|+|++|+.+++.|..+|++|++...+...                 ..+    +  ....+.+++ -.+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            4689999999999999999999999999999854332100                 000    0  001122332 246


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ||+++-|.+     .+.++.+...+++ =.+++--+-+.+ . ..-.+.|+++.+.
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~  154 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL  154 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence            898888865     4567888888887 344555556665 4 5566888888886

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.59  E-value=0.00024  Score=65.67  Aligned_cols=79  Identities=19%  Similarity=0.346  Sum_probs=65.2

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhh----CCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEA----FDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      +.++.||++.|||-+. +|+.++..|..    .+++|..+....         .++.+.+++||+|+.+++    ..+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG----~p~li  218 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIG----RPRFV  218 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecC----CCCcC
Confidence            3468999999999986 69999999987    788887765321         368999999999999985    45678


Q ss_pred             cHHHHhccCCCcEEEEeCCC
Q 042102          218 NRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg  237 (317)
                      .++++   |+|+++||+|--
T Consensus       219 ~~~~v---k~GavVIDVGi~  235 (286)
T PRK14184        219 TADMV---KPGAVVVDVGIN  235 (286)
T ss_pred             CHHHc---CCCCEEEEeeee
Confidence            88776   999999999843

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.57  E-value=0.00024  Score=67.22  Aligned_cols=84  Identities=19%  Similarity=0.270  Sum_probs=63.2

Q ss_pred             CCeEEEEecChhHHHHHHHHhh-CC-CEEEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEA-FD-CIIGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      -+++||||.|.+|+..++.+.. +. -+|.+|+++.+...         +  .....+.++++++||+|++|+|.+   .
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence            4689999999999987776653 33 47899999865421         1  223578999999999999998854   4


Q ss_pred             ccccHHHHhccCCCcEEEEeCCC
Q 042102          215 HIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      .++..+.   +|||+.+..+|.-
T Consensus       205 P~~~~~~---l~~g~~v~~vGs~  224 (325)
T TIGR02371       205 PVVKADW---VSEGTHINAIGAD  224 (325)
T ss_pred             cEecHHH---cCCCCEEEecCCC
Confidence            5666554   5999999999853

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.57  E-value=0.00042  Score=63.79  Aligned_cols=105  Identities=14%  Similarity=0.052  Sum_probs=72.5

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------CccccCCHHH-hcccCCEEEEeccCC--hhh
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYKYYPNLID-LASNCQILVVACSLT--EET  213 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~e-l~~~aDvV~~~lp~~--~~t  213 (317)
                      ..+++++|+|.|.+|++++..+...|++|.+++|+..+..         +.....++++ ...++|+|+.++|..  +..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            4678999999999999999999999999999998754321         1111123333 345799999999974  222


Q ss_pred             hc-cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          214 QH-IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       214 ~~-li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .. .+.   .+.++++.+++|+.-.+. ++ .|.+..++..+.
T Consensus       195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~G~~  232 (270)
T TIGR00507       195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSLGTK  232 (270)
T ss_pred             CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCCe
Confidence            11 122   345789999999977664 33 577777666654

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.57  E-value=0.00033  Score=65.00  Aligned_cols=80  Identities=20%  Similarity=0.337  Sum_probs=64.9

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhC----CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAF----DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      +.++.||++.|||-+. +|+.++..|...    +++|..+....         .++.+..++||+|++++.    ..++|
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvG----kp~~i  218 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALG----QPEFV  218 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccC----CcCcc
Confidence            3469999999999985 699999999866    68888774321         368999999999999988    44678


Q ss_pred             cHHHHhccCCCcEEEEeCCCc
Q 042102          218 NRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~  238 (317)
                      ..+.   .|+|+++||+|--.
T Consensus       219 ~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        219 KADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             CHHH---cCCCCEEEEecCcc
Confidence            8766   58999999998644

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.57  E-value=7.4e-05  Score=58.68  Aligned_cols=87  Identities=15%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-CCCcc-ccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-NLNYK-YYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-~~~~~-~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .++|++|.|||.|.+|..-++.|...|++|.++++.... ..... ....+++.+..+|+|+.+.+.. +    +++...
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~-~----~n~~i~   78 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDP-E----LNEAIY   78 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-H-H----HHHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCH-H----HHHHHH
Confidence            588999999999999999999999999999999887310 01111 1233456688899888776532 2    345555


Q ss_pred             hccCCCcEEEEeCC
Q 042102          223 NALGPKGVLINIGR  236 (317)
Q Consensus       223 ~~mk~gavlVN~~r  236 (317)
                      ...+.-.++||++-
T Consensus        79 ~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   79 ADARARGILVNVVD   92 (103)
T ss_dssp             HHHHHTTSEEEETT
T ss_pred             HHHhhCCEEEEECC
Confidence            56666677888753

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.55  E-value=0.00036  Score=64.90  Aligned_cols=80  Identities=15%  Similarity=0.258  Sum_probs=64.5

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhC----CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAF----DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      +.++.||++.|||-+. +|+.+|..|...    +++|..+...         ..++.+..++||+|++++.    -.+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~~l~~~~~~ADIvIsAvG----kp~~i  218 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------TDDLAAKTRRADIVVAAAG----VPELI  218 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence            3469999999999985 699999999765    7889876432         1368899999999999977    34578


Q ss_pred             cHHHHhccCCCcEEEEeCCCc
Q 042102          218 NRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~  238 (317)
                      ..++   .|+|+++||+|--.
T Consensus       219 ~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        219 DGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CHHH---cCCCCEEEEccccc
Confidence            8766   58999999998544

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.55  E-value=0.00035  Score=65.02  Aligned_cols=133  Identities=17%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhC----CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAF----DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      +.++.|+++.|||-+. +|+.+|..|...    +++|..+...         ..++.+..++||+|++++.    ..+++
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------T~~l~~~~~~ADIvVsAvG----kp~~i  222 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------SKNLARHCQRADILIVAAG----VPNLV  222 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------CcCHHHHHhhCCEEEEecC----CcCcc
Confidence            4579999999999875 699999999876    7888876432         2368899999999999986    34678


Q ss_pred             cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHH
Q 042102          218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD  297 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~  297 (317)
                      ..+.+   |+|+++||+|--.+.+.      .++|+.. ..-||-..      ...+. --.+||--||...-...-+.+
T Consensus       223 ~~~~i---k~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe------~v~~~-a~~iTPVPGGVGp~T~a~L~~  285 (297)
T PRK14168        223 KPEWI---KPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFD------AVKEI-AGKITPVPGGVGPMTIAMLMR  285 (297)
T ss_pred             CHHHc---CCCCEEEecCCCccCcc------ccCCCcc-eeccccHH------HHHhh-ccEecCCCCCchHHHHHHHHH
Confidence            88764   89999999986553211      1234311 23454311      11222 136889777766544333333


Q ss_pred             HHHHHHHH
Q 042102          298 LVVGNLQA  305 (317)
Q Consensus       298 ~~~~nl~~  305 (317)
                      .+++..++
T Consensus       286 N~~~a~~~  293 (297)
T PRK14168        286 NTLKSAKF  293 (297)
T ss_pred             HHHHHHHH
Confidence            34333333

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.53  E-value=0.00035  Score=66.53  Aligned_cols=90  Identities=26%  Similarity=0.268  Sum_probs=63.9

Q ss_pred             eEEEEecChhHHHHHHHHhhCC--------CEEEEeCCCC-----C-----------C--CCC------ccccCCHHHhc
Q 042102          150 SVGILGMGRIGTAIAKRAEAFD--------CIIGYNSRTE-----K-----------P--NLN------YKYYPNLIDLA  197 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G--------~~V~~~~~~~-----~-----------~--~~~------~~~~~~l~el~  197 (317)
                      +|+|||.|+.|.++|..|...|        .+|..|.+..     .           .  .++      .....++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998766        8998887622     0           0  011      11346789999


Q ss_pred             ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          198 SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       198 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      +.||+|++++|... .+.++ .+.-..++++..+|+++-|=-.+
T Consensus        81 ~~ADiIIlAVPs~~-i~~vl-~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        81 KGADILVFVIPHQF-LEGIC-KQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             hcCCEEEEECChHH-HHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence            99999999999432 23332 34444678889999998874333

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.49  E-value=0.00094  Score=62.48  Aligned_cols=111  Identities=19%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CC-------------ccccCCHHHhcc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LN-------------YKYYPNLIDLAS  198 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~el~~  198 (317)
                      -++|||||.|.||+.+|..+..-|+.|..+|++++..                .+             .....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            3699999999999999999988779999999874321                00             00112222 689


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVL-INIGRGLLVDEHELVSALLQGRLGGAGLDVFE  263 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~  263 (317)
                      .||+|+=++|-+-+.+.-+-++.=+..+|+++| -|||+   +.-.++.+++ +.+=+..++=.|.
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~-~rper~iG~HFfN  143 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEAL-KRPERFIGLHFFN  143 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHh-CCchhEEEEeccC
Confidence            999999999998888776656666678899998 55554   4455677777 4444445555443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.49  E-value=0.00049  Score=60.66  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=67.0

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC---CCC---------CCC-----------------cc-----
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT---EKP---------NLN-----------------YK-----  188 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~---~~~---------~~~-----------------~~-----  188 (317)
                      ..|..++|+|+|+|.+|..+|+.|...|. ++..+|+.   ...         ..+                 ..     
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            45888999999999999999999999998 68888865   110         000                 00     


Q ss_pred             ---ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102          189 ---YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       189 ---~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~  234 (317)
                         ...++.++++++|+|+.+ ..+.+++.++.......++...++...
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~  144 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS  144 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence               012345678899999888 688889988888888888876666643

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.47  E-value=0.00031  Score=68.57  Aligned_cols=87  Identities=23%  Similarity=0.344  Sum_probs=63.1

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------C---ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------N---YKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~---~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .+.|+++.|||.|.+|+.+++.|...|. ++++++|+.....      +   ...+.++.+.+.++|+|+.|.+..   .
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence            5789999999999999999999999996 7999999864321      1   112345677899999999997743   3


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                      .+|..+...  .+.-++||.+=
T Consensus       255 ~vi~~~~~~--~~~~~~iDLav  274 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDISI  274 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeCC
Confidence            456655542  22356677653

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.46  E-value=0.00035  Score=65.58  Aligned_cols=96  Identities=22%  Similarity=0.327  Sum_probs=69.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC-----------C--CC------CccccCCHHHhcccCCEEEEeccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK-----------P--NL------NYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~-----------~--~~------~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ++|+|+|.|.-|.++|+.|...|..|..|.|.++           +  ..      ......++.++++.||+|++.+|.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            5899999999999999999999999988876432           1  01      122457899999999999999993


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHH
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV  246 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~  246 (317)
                      . ..+.++. ..-..+++++.+|+++-|=-.+.-.+.
T Consensus        82 ~-~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l~  116 (329)
T COG0240          82 Q-ALREVLR-QLKPLLLKDAIIVSATKGLEPETGRLL  116 (329)
T ss_pred             H-HHHHHHH-HHhhhccCCCeEEEEeccccCCCcchH
Confidence            3 2333222 222456799999999877555444333

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.46  E-value=0.00037  Score=65.98  Aligned_cols=82  Identities=22%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             EEEEecChhHHHHHHHHhh-CCCEEEE-eCCCCCCC------CCc------------------cccCCHHHhcccCCEEE
Q 042102          151 VGILGMGRIGTAIAKRAEA-FDCIIGY-NSRTEKPN------LNY------------------KYYPNLIDLASNCQILV  204 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~------~~~------------------~~~~~l~el~~~aDvV~  204 (317)
                      |||+|||.||+.+++.+.. -+++|.+ .|..++..      .++                  ....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999998764 4577764 44333210      010                  11336889999999999


Q ss_pred             EeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          205 VACSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       205 ~~lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      .|.|.   +.+..+++.+..|+.+++|+..-
T Consensus        81 e~Tp~---~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        81 DATPG---GIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             ECCCC---CCChhhHHHHHhCCcCEEEECCC
Confidence            88654   46678999999999999888753

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.46  E-value=0.00025  Score=68.66  Aligned_cols=94  Identities=17%  Similarity=0.281  Sum_probs=68.3

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------C--ccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------N--YKYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      +|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+..      +  +....++.+.+.++|+|+++..   +...
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence            4899999999999999999999999996 7899999876431      2  2234567788999999999854   3345


Q ss_pred             cccHHHHhcc-C--CCcEEEEeCCCcccC
Q 042102          216 IVNRQVINAL-G--PKGVLINIGRGLLVD  241 (317)
Q Consensus       216 li~~~~l~~m-k--~gavlVN~~rg~~vd  241 (317)
                      ++..+.+... +  +.-++||.+=..-|+
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavPRdie  280 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVPRDVE  280 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCCCCCC
Confidence            6666655433 2  124788887544343

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.44  E-value=0.00036  Score=65.46  Aligned_cols=85  Identities=12%  Similarity=0.074  Sum_probs=65.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC---------Cccc-cCCHHHhcccCCEEEEeccCChhhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL---------NYKY-YPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~~~~-~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      ..++++|+|.|.+|+..++.+.. ++. +|.+|+|++.+..         +... ..+.++++.++|+|+.+.|.+   .
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence            46799999999999999999864 675 6899999865321         1111 357889999999999998865   3


Q ss_pred             ccccHHHHhccCCCcEEEEeCCCc
Q 042102          215 HIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      .+|..    .+|||+.+..+|.-.
T Consensus       201 Pl~~~----~~~~g~hi~~iGs~~  220 (304)
T PRK07340        201 PVYPE----AARAGRLVVAVGAFT  220 (304)
T ss_pred             ceeCc----cCCCCCEEEecCCCC
Confidence            56654    269999999998543

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.44  E-value=0.00052  Score=65.95  Aligned_cols=92  Identities=16%  Similarity=0.217  Sum_probs=63.5

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCC-------CEEEEeCCCCCC------------------CCC------ccccCCHHHh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFD-------CIIGYNSRTEKP------------------NLN------YKYYPNLIDL  196 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~~------------------~~~------~~~~~~l~el  196 (317)
                      .++|+|||.|..|.++|..|...|       .+|..|.+.+.-                  .++      .....+++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            358999999999999999997655       788877766531                  011      1124678899


Q ss_pred             cccCCEEEEeccCChhhhccccHHHHh--ccCCCcEEEEeCCCcccC
Q 042102          197 ASNCQILVVACSLTEETQHIVNRQVIN--ALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       197 ~~~aDvV~~~lp~~~~t~~li~~~~l~--~mk~gavlVN~~rg~~vd  241 (317)
                      ++.||+|++++|... .+.++ ++.-.  .+++++++|+++-|=-.+
T Consensus        91 v~~aDiIvlAVPsq~-l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         91 VEDADLLIFVIPHQF-LESVL-SQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             HhcCCEEEEEcChHH-HHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence            999999999999432 33332 22222  456678999998775443

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.37  E-value=0.00045  Score=61.23  Aligned_cols=92  Identities=24%  Similarity=0.275  Sum_probs=63.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--CCE-EEEeCCCCCCCC------CccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--DCI-IGYNSRTEKPNL------NYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--G~~-V~~~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      .+|||||+|.||+.+.+.++.-  +++ +.+||++.++..      ......+++|++++.|+++=|.. .++.+    +
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~----e   75 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVR----E   75 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHH----H
Confidence            4799999999999999999742  454 678898765432      12234679999999998887744 22223    2


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHH
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHEL  245 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL  245 (317)
                      -..+.+|.|-=+|=+|-|.+.|+.-+
T Consensus        76 ~~~~~L~~g~d~iV~SVGALad~~l~  101 (255)
T COG1712          76 YVPKILKAGIDVIVMSVGALADEGLR  101 (255)
T ss_pred             HhHHHHhcCCCEEEEechhccChHHH
Confidence            23344566666666777888876543

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.37  E-value=0.0028  Score=59.50  Aligned_cols=106  Identities=18%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---CCcc--------------ccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---LNYK--------------YYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~--------------~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+|||.|.||..+|.+|...|.+|.++.|+....   .+..              ...+. +....+|+|+++++...
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~~   84 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTTA   84 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCCC
Confidence            689999999999999999999999998887754211   0100              01122 34678999999999553


Q ss_pred             hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEE
Q 042102          212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAG  258 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~  258 (317)
                       +...+ +..-..+++++.++...-| +-.++.|.+.+...++.++.
T Consensus        85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence             23222 2334456778888887665 44667777777666766543

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.37  E-value=0.00056  Score=64.95  Aligned_cols=95  Identities=16%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             ccccccCCeEEEEec-ChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC------CccccCCHHHhcccCCEEEEeccCChh
Q 042102          142 MTTKFTGKSVGILGM-GRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL------NYKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       142 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ++..+.|++|.|+|. |.||+.+++.|.. .|. +++..+|+.....      ......++++.+.++|+|+.+....  
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~--  226 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP--  226 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence            355799999999999 8999999999974 564 7888888653321      1112235778999999887665432  


Q ss_pred             hhc-cccHHHHhccCCCcEEEEeCCCcccCH
Q 042102          213 TQH-IVNRQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       213 t~~-li~~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                       .. +++++.+   +++.++||.|+..=||.
T Consensus       227 -~~~~I~~~~l---~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        227 -KGVEIDPETL---KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             -cCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence             23 3777654   79999999999877764

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.36  E-value=0.004  Score=56.84  Aligned_cols=105  Identities=16%  Similarity=0.121  Sum_probs=71.3

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEE-eCCCC-----C--------------CCCC-----c------cccCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY-NSRTE-----K--------------PNLN-----Y------KYYPN  192 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~-----~--------------~~~~-----~------~~~~~  192 (317)
                      .++.|+||.|-|+|++|+.+|+.|..+|++|++ .|.+.     +              ....     +      ....+
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~  113 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE  113 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence            468999999999999999999999999999884 44110     0              0000     0      00112


Q ss_pred             HHHh-cccCCEEEEeccCChhhhccccHHHHhccC--CCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          193 LIDL-ASNCQILVVACSLTEETQHIVNRQVINALG--PKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       193 l~el-~~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .+++ -..||+++-|     .+.+.|+++..+.++  +-.+++-.+-|++-+  +-.+.|.++.|.
T Consensus       114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            2333 3468988877     357889999888885  345566777777655  445777787776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.34  E-value=0.00077  Score=64.22  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-------------CC-C------ccccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-------------NL-N------YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-------------~~-~------~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      ++|+|||.|.+|..+|..|...| .|..|.+++..             .. +      .....++.+.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            58999999999999999999888 55555553211             00 1      1123567788999999999999


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      .. .++..+ ++.-..++++..+|++.-|=-
T Consensus        87 s~-~~~~vl-~~i~~~l~~~~~vIsl~kGi~  115 (341)
T PRK12439         87 SH-GFRGVL-TELAKELRPWVPVVSLVKGLE  115 (341)
T ss_pred             HH-HHHHHH-HHHHhhcCCCCEEEEEEeCCc
Confidence            32 344433 334445678888999887643

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.34  E-value=0.0042  Score=58.59  Aligned_cols=152  Identities=13%  Similarity=0.143  Sum_probs=114.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------CccccCCHHHh---cccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------NYKYYPNLIDL---ASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---~~~aDvV~~~lp~~~~t~~  215 (317)
                      ..+|+||++.|||.++-.....|+.|.+|+|+..+..          ...-..+++++   ++.-..|++.+.....+..
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            4699999999999999999999999999999764321          11224567776   6778888888877766666


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHH
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKA  294 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~  294 (317)
                      +| ++....|.+|-++|+-+...--|...-.+.|.+..|-..+.-|-..|...- .|-       +   +-|.+.+++.+
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-------l---MpGg~~~Awp~  155 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-------L---MPGGSKEAWPH  155 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-------c---CCCCChHHHHH
Confidence            66 567788999999999999999999999999999998888888887776422 121       1   23677888888


Q ss_pred             HHHHHHHHHHHHHCCCC
Q 042102          295 MADLVVGNLQAHFGKKP  311 (317)
Q Consensus       295 ~~~~~~~nl~~~~~g~~  311 (317)
                      +-.++.+---..-+|+|
T Consensus       156 ik~ifq~iaakv~~~ep  172 (487)
T KOG2653|consen  156 IKDIFQKIAAKVSDGEP  172 (487)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            86655444333335554

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.32  E-value=0.0012  Score=52.94  Aligned_cols=100  Identities=24%  Similarity=0.369  Sum_probs=69.6

Q ss_pred             CeEEEEe----cChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102          149 KSVGILG----MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA  224 (317)
Q Consensus       149 ~~vgIiG----~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~  224 (317)
                      |+++|||    -+..|..+.+.|+..|++|+..++....-.+...+.++.|.-...|++++++|... +..++.  .+..
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~-~~~~v~--~~~~   77 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDK-VPEIVD--EAAA   77 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHH-HHHHHH--HHHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHH-HHHHHH--HHHH
Confidence            5899999    78999999999999999999999887666677778899985588999999998433 233332  2334


Q ss_pred             cCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          225 LGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       225 mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +..+.+++..+    ..++.+.+.+++..+.
T Consensus        78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   78 LGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            46778888877    6677888888888776

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.31  E-value=0.00093  Score=63.27  Aligned_cols=84  Identities=15%  Similarity=0.130  Sum_probs=64.2

Q ss_pred             cCCeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCCC----------Cc--cccCCHHHhcccCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPNL----------NY--KYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ..++++|||.|.+|+..++.+. .++. +|.+|+|+..+..          +.  ....++++.+++||+|+.+.|..  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            3569999999999999999886 4775 6899999865321          11  22467889999999999998864  


Q ss_pred             hhccccHHHHhccCCCcEEEEeCC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                       ..+|..+.   +|+|+.+..++.
T Consensus       206 -~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 -TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             -CcEecHHH---cCCCcEEEeeCC
Confidence             35666554   689998888864

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.30  E-value=0.00061  Score=64.43  Aligned_cols=85  Identities=21%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc------cCCHHHhcccCCEEEEeccCChhhhc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY------YPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~------~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .|++|+|+|+|..|....+.++++|++|++++++.++.     .+...      ....+++-+.+|+++.+.+ .. +- 
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~-~~-  242 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PA-TL-  242 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hh-hH-
Confidence            48999999999999999999999999999999987653     11111      1122333333788888777 32 22 


Q ss_pred             cccHHHHhccCCCcEEEEeCCC
Q 042102          216 IVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg  237 (317)
                         ...++.+|++..++-+|=.
T Consensus       243 ---~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         243 ---EPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ---HHHHHHHhcCCEEEEECCC
Confidence               3456667777777766543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.30  E-value=0.0095  Score=53.17  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=68.4

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC----------CC------CCCcccc-----CCHHHh-cccC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE----------KP------NLNYKYY-----PNLIDL-ASNC  200 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~----------~~------~~~~~~~-----~~l~el-~~~a  200 (317)
                      .++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+.          +.      .......     .+-+++ -..|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            46899999999999999999999999999765 455443          10      0000000     111233 2378


Q ss_pred             CEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      |+++-|.+     .+.|+.+....++ -.+++--+.+++-+  .-.+.|.+..+.
T Consensus        99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            99988876     3478888888786 44556666777655  345666666665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PLN02477 glutamate dehydrogenase

Probab=97.28  E-value=0.0073  Score=58.87  Aligned_cols=105  Identities=15%  Similarity=0.173  Sum_probs=71.6

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC-----CCC---------------CCcc--ccCCHHHh-cc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE-----KPN---------------LNYK--YYPNLIDL-AS  198 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-----~~~---------------~~~~--~~~~l~el-~~  198 (317)
                      +.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+.     +..               .++.  ...+.+++ ..
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            447899999999999999999999999999988 444431     000               0000  01122232 44


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .||+++-|.     ..+.|+++....++ -.+++--+-+.+ .. .-.+.|++..|.
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~  329 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV  329 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence            788887763     45678888888875 456677778887 33 345788888876

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.26  E-value=0.00086  Score=63.47  Aligned_cols=84  Identities=14%  Similarity=0.120  Sum_probs=63.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ..++++|||.|.+|+..+..+. ..++ +|.+++|++++..          +  .....+++++++++|+|+++.|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            4678999999999998887764 4576 6889999765321          1  123567899999999999999855  


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                       ..++.    +.+|+|+.++.+|.-
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCCC
Confidence             34554    456999999888753

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.24  E-value=0.00094  Score=63.02  Aligned_cols=88  Identities=18%  Similarity=0.273  Sum_probs=60.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-------------CCCc------cccCCHHHhc-ccCCEEEEecc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-------------NLNY------KYYPNLIDLA-SNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-------------~~~~------~~~~~l~el~-~~aDvV~~~lp  208 (317)
                      ++|+|||.|.+|..+|..|...|.+|..|+|+.+.             ..+.      ....++.+.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            37999999999999999999999999999885420             0011      1234566665 58999999999


Q ss_pred             CChhhhccccHHHHh-ccCCCcEEEEeCCCc
Q 042102          209 LTEETQHIVNRQVIN-ALGPKGVLINIGRGL  238 (317)
Q Consensus       209 ~~~~t~~li~~~~l~-~mk~gavlVN~~rg~  238 (317)
                      ... +..++ ++... .++++..+|.+.-|-
T Consensus        81 s~~-~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 TQQ-LRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             HHH-HHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            443 33333 23333 566777777776664

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.23  E-value=0.0016  Score=68.24  Aligned_cols=110  Identities=15%  Similarity=0.150  Sum_probs=78.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  199 (317)
                      ++|+|||.|.||..+|..+...|++|..+|++++...                +             .....+++ .++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5799999999999999999999999999998754210                0             01123454 5799


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEE-EeCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSALLQGRLGGAGLDVFE  263 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV-N~~rg~~vd~~aL~~al~~g~i~ga~lDV~~  263 (317)
                      ||+|+=++|-+-+.+.-+-++.=+.++++++|. |+|.   ++...|.+.+.. +=+-.++..|.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~-p~r~ig~Hff~  475 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSR-PEKVIGMHYFS  475 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCC-ccceEEEeccC
Confidence            999999999888877766666667789999885 4433   555667766643 23334565553

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.22  E-value=0.0017  Score=59.28  Aligned_cols=98  Identities=18%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhC---CCEEE-EeCCCCCCC----CCccccCCHHHh-cccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF---DCIIG-YNSRTEKPN----LNYKYYPNLIDL-ASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~-~~~~~~~~~----~~~~~~~~l~el-~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|||||+|.||+.+++.+..-   ++++. ++++.....    .......+++++ ....|+|+=|..-..     +-+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~a-----v~e   77 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQA-----IAE   77 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHH-----HHH
Confidence            5899999999999999998643   35554 556554221    123346789997 688999888865221     112


Q ss_pred             HHHhccCCCcEEEEeCCCcccCH---HHHHHHHHh
Q 042102          220 QVINALGPKGVLINIGRGLLVDE---HELVSALLQ  251 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~---~aL~~al~~  251 (317)
                      --.+.++.|.-++=.|-|.+.|.   +.|.++.++
T Consensus        78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            22333556777777778888874   344454444

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.20  E-value=0.0024  Score=66.69  Aligned_cols=110  Identities=16%  Similarity=0.144  Sum_probs=77.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  199 (317)
                      ++|+|||.|.||+.+|..+...|++|..+|.+++...                +             .....++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999998754210                0             0112345 45799


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF  262 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~  262 (317)
                      ||+|+=++|-+-+.+.-+-++.-+.++++++|....++  +....|.+.+.. +-+..++-.|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff  452 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFF  452 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecC
Confidence            99999999988887776666666778999988543332  444566666642 2233344444

>PRK06046 alanine dehydrogenase; Validated

Probab=97.18  E-value=0.00084  Score=63.59  Aligned_cols=82  Identities=21%  Similarity=0.299  Sum_probs=61.5

Q ss_pred             CCeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccCChhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      -+++||||.|.+|+..++.+. ..+. +|.+|+|+.....          +  .....+++++++ +|+|++++|.+   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            358999999999999998886 3455 5778998764321          1  123567888887 99999999865   


Q ss_pred             hccccHHHHhccCCCcEEEEeCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ..+|..+.   +|+|+.+..+|.
T Consensus       205 ~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        205 KPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             CcEecHHH---cCCCCEEEecCC
Confidence            35677654   589999888874

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.17  E-value=0.00099  Score=61.90  Aligned_cols=91  Identities=15%  Similarity=0.009  Sum_probs=61.2

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC-------------ccccCCHHHhcccCCEEEEeccCC
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN-------------YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-------------~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      .+.++++.|+|.|.+|++++..|...|+ +|.+++|+..+...             .....++.+.++++|+|+.+.|..
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            3567899999999999999999999998 79999997643210             001234555678899999998853


Q ss_pred             hh-hhc-cccHHHHhccCCCcEEEEeCCCc
Q 042102          211 EE-TQH-IVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       211 ~~-t~~-li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      -. ... .++.   +.++++.+++|+.-.+
T Consensus       204 m~~~~~~~~~~---~~l~~~~~v~DivY~P  230 (284)
T PRK12549        204 MAKHPGLPLPA---ELLRPGLWVADIVYFP  230 (284)
T ss_pred             CCCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence            11 111 1222   2356666777765544

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.15  E-value=0.00075  Score=64.00  Aligned_cols=58  Identities=26%  Similarity=0.384  Sum_probs=46.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc-------cccC---CHHHhcccCCEEEE
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY-------KYYP---NLIDLASNCQILVV  205 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-------~~~~---~l~el~~~aDvV~~  205 (317)
                      ++||||||-|..|+.|+...+.+|.+|.+.|+.++.....       ..++   .+.++++.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999999999999999999877654211       0122   47889999999965

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.12  E-value=0.003  Score=65.94  Aligned_cols=99  Identities=18%  Similarity=0.127  Sum_probs=72.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  199 (317)
                      ++|+|||.|.||..+|..+...|++|..+|++++...                +             .....++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5799999999999999999999999999998754210                0             0112344 45799


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      ||+|+=++|-+-+.+.-+-++.-+.++|+++|-...+  -++...|...+.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS--~l~i~~ia~~~~  441 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTS--TISISLLAKALK  441 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHhhcC
Confidence            9999999998888776555666677899999854333  245556666664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.09  E-value=0.0033  Score=57.48  Aligned_cols=119  Identities=14%  Similarity=0.132  Sum_probs=68.0

Q ss_pred             HHHHHhhCC--CEEEEeCCCCCCC-----CCcc--ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEE
Q 042102          163 IAKRAEAFD--CIIGYNSRTEKPN-----LNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN  233 (317)
Q Consensus       163 ~a~~l~~~G--~~V~~~~~~~~~~-----~~~~--~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN  233 (317)
                      +|+.|+..|  .+|+++|+++...     .+..  ...+ .+.++++|+|++|+|... +..++ ++....+++|+++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~~-~~~~l-~~~~~~~~~~~iv~D   77 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVSA-IEDVL-EEIAPYLKPGAIVTD   77 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HHH-HHHHH-HHHHCGS-TTSEEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHHH-HHHHH-HHhhhhcCCCcEEEE
Confidence            467777777  7999999876532     2222  1223 578999999999999654 33333 556667999999999


Q ss_pred             eCCCcccCHHHHHHHHHhCCceEEEe-eCCCCCCCC----CcccCCCCceEEcccCC
Q 042102          234 IGRGLLVDEHELVSALLQGRLGGAGL-DVFEHEPDV----PEELIGLENVVLLPHVA  285 (317)
Q Consensus       234 ~~rg~~vd~~aL~~al~~g~i~ga~l-DV~~~EP~~----~~~L~~~pnvi~tPH~a  285 (317)
                      ++.-..--.+++.+.+. ......+. =.|.+|-..    ...|+.--++++||+-.
T Consensus        78 v~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   78 VGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             --S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             eCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            98755433344444444 22222221 123333211    12688888999999855

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.09  E-value=0.00098  Score=63.22  Aligned_cols=83  Identities=11%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC----------Cc--cccCCHHHhcccCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL----------NY--KYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~~--~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ..++++|||.|.+|+..+..+.. .+. +|.+|+|+..+..          +.  ....++++++++||+|+++.|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            35799999999999998888874 564 7899998854321          11  22467899999999999998864  


Q ss_pred             hhccccHHHHhccCCCcEEEEeC
Q 042102          213 TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~  235 (317)
                       ..++..+.   +++|+.+..++
T Consensus       209 -~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 -EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             -CcEecHHH---cCCCceEEeeC
Confidence             34666544   57887766654

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.09  E-value=0.001  Score=62.64  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=54.5

Q ss_pred             CeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCC--------C---CccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPN--------L---NYKYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~--------~---~~~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      +++||+|.|..|+.-++.+.. ++. +|.+|+|++...        .   ......+.++++++||+|+.+.|.+..+ .
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence            489999999999998887754 666 789999986431        1   1224578999999999999998866432 5


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcc
Q 042102          216 IVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      ++..+   .+|||+.++.+|....
T Consensus       208 ~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  208 VFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             SB-GG---GS-TT-EEEE-S-SST
T ss_pred             cccHH---HcCCCcEEEEecCCCC
Confidence            67765   4689999999987544

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.08  E-value=0.0014  Score=57.92  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          141 KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |+.-++.|++|.|||.|.+|...++.|...|++|.++++..
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45567999999999999999999999999999999988654

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.07  E-value=0.0015  Score=65.15  Aligned_cols=68  Identities=18%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc-----cccCCHHHh--cccCCEEEEeccCCh
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY-----KYYPNLIDL--ASNCQILVVACSLTE  211 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~el--~~~aDvV~~~lp~~~  211 (317)
                      ..+.+++++|+|.|.+|++++..+...|++|.+++|+..+....     ....++.++  +.++|+|++|+|...
T Consensus       328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~  402 (477)
T PRK09310        328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSV  402 (477)
T ss_pred             CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCC
Confidence            45789999999999999999999999999999998865332110     011122222  568999999999653

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.04  E-value=0.0019  Score=60.82  Aligned_cols=102  Identities=11%  Similarity=0.086  Sum_probs=66.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCC-CCC---CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTE-KPN---LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~-~~~---~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .+|||||+|+||+.+++.+... ++++. +++++. ...   .+.....+.++++.+.|+|++|.|....     -+...
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~   78 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA   78 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence            6899999999999999999765 78865 578764 211   1222335677788999999999986533     13344


Q ss_pred             hccCCCcEEEEeCCC--cccC-HHHHHHHHHh-CCce
Q 042102          223 NALGPKGVLINIGRG--LLVD-EHELVSALLQ-GRLG  255 (317)
Q Consensus       223 ~~mk~gavlVN~~rg--~~vd-~~aL~~al~~-g~i~  255 (317)
                      ..++.|.-+|+..--  .+-+ .+.+.++-++ |++.
T Consensus        79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            556777777777431  1112 2344444553 6665

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.03  E-value=0.0016  Score=52.40  Aligned_cols=85  Identities=15%  Similarity=0.150  Sum_probs=53.1

Q ss_pred             eEEEEe-cChhHHHHHHHHhhC-CCEEEEe-CCCCCCCCC-------cc-c-cCCHH-Hh--cccCCEEEEeccCChhhh
Q 042102          150 SVGILG-MGRIGTAIAKRAEAF-DCIIGYN-SRTEKPNLN-------YK-Y-YPNLI-DL--ASNCQILVVACSLTEETQ  214 (317)
Q Consensus       150 ~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~~-------~~-~-~~~l~-el--~~~aDvV~~~lp~~~~t~  214 (317)
                      ++||+| .|.+|+.+++.+... ++++... ++.......       .. . ....+ +.  ..++|+|++|+|......
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            589999 599999999999874 7776544 432211100       00 0 01111 12  258999999999775433


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                       .+. .....+++|.++|+++.
T Consensus        81 -~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       81 -IAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             -HHH-HHHhhhcCCCEEEECCc
Confidence             221 23456789999999973

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.01  E-value=0.0026  Score=59.94  Aligned_cols=83  Identities=14%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      -++++|+|.|..++.-++.+.. +.. +|.+|+|++....         +  .....+.++++++||+|+++.+.+   .
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence            4699999999999988887764 444 7999999875421         1  122567899999999999997744   4


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                      .+|..+.   +|||+.++.+|.
T Consensus       205 P~~~~~~---l~~G~hi~~iGs  223 (315)
T PRK06823        205 PLLQAED---IQPGTHITAVGA  223 (315)
T ss_pred             ceeCHHH---cCCCcEEEecCC
Confidence            6777654   589999999974

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.01  E-value=0.0027  Score=58.34  Aligned_cols=102  Identities=20%  Similarity=0.186  Sum_probs=62.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC-------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN-------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|||||+|.||+.+++.+... ++++. ++++.....       .+.....+++++-.+.|+|+.|.|.... .    +
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence            4899999999999999998765 45543 333322111       1233456788875569999999885432 1    2


Q ss_pred             HHHhccCCCcEEEEeCCCcccCH---HHHHHHHHhCCce
Q 042102          220 QVINALGPKGVLINIGRGLLVDE---HELVSALLQGRLG  255 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~---~aL~~al~~g~i~  255 (317)
                      -....++.|.-++-.+-|.+.|.   +.|.++.+++...
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            22333455555555555655554   3456666655544

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.99  E-value=0.0067  Score=56.68  Aligned_cols=109  Identities=9%  Similarity=0.154  Sum_probs=75.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeC--CCCCCCCCccccCCHHHhcccCCEEEEeccCChhhh---c------
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNS--RTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQ---H------  215 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~--~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~---~------  215 (317)
                      .|++++|||.=.=-..++++|.+.|++|.++.  .......+.....+.+++++++|+|++-+|.+.+..   .      
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~   80 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK   80 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence            37899999998888999999999999887543  222223455555677889999999999988754321   1      


Q ss_pred             -cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102          216 -IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF  262 (317)
Q Consensus       216 -li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~  262 (317)
                       -++.+.++.|++|..++ +|.+..-    +-+.+++.++.  .+|..
T Consensus        81 ~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~--~~~~~  121 (296)
T PRK08306         81 LVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK--LVELF  121 (296)
T ss_pred             CcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe--EEEEe
Confidence             13578899999998544 4443321    33556678887  34544

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.97  E-value=0.005  Score=64.23  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=75.7

Q ss_pred             CeEEEEecChhHHHHHHHHh-hCCCEEEEeCCCCCCC----------------CC-------------ccccCCHHHhcc
Q 042102          149 KSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRTEKPN----------------LN-------------YKYYPNLIDLAS  198 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~el~~  198 (317)
                      ++|+|||.|.||+.+|..+. ..|++|..+|.+++..                .+             .....++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999887 5899999999875321                00             0112344 4679


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF  262 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~  262 (317)
                      .||+|+=++|-+.+.+.-+-++.-+.++++++|....++  +....|...+.. +=+..++--|
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hff  444 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYF  444 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecC
Confidence            999999999998887766656666778999888543332  344456666632 2233455544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.96  E-value=0.0039  Score=58.86  Aligned_cols=112  Identities=14%  Similarity=0.175  Sum_probs=68.6

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCC-------------C--cc--ccCCHHHhcccCCEEEEec
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNL-------------N--YK--YYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~-------------~--~~--~~~~l~el~~~aDvV~~~l  207 (317)
                      +..++|+|||.|.+|..++..+...| .++..+|.......             +  ..  ...+++ .++.||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            35679999999999999999998778 58888887653211             0  01  124555 779999999998


Q ss_pred             --cCChh-hh--------cccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHH--HhCCceEEE
Q 042102          208 --SLTEE-TQ--------HIVN--RQVINALGPKGVLINIGRGLLVDEHELVSAL--LQGRLGGAG  258 (317)
Q Consensus       208 --p~~~~-t~--------~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al--~~g~i~ga~  258 (317)
                        |..+. ++        .++.  .+.+....|.+++|+++-..=+-...+.+.-  ...++.|.+
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence              43331 11        1110  1233445688999998653323333343332  135666555

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.96  E-value=0.0086  Score=62.56  Aligned_cols=110  Identities=14%  Similarity=0.116  Sum_probs=77.3

Q ss_pred             CeEEEEecChhHHHHHHHHh-hCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhcc
Q 042102          149 KSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLAS  198 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~  198 (317)
                      ++|+|||.|.||..+|..+. ..|+.|..+|.+++...                +             .....++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 78999999998654210                0             0112344 4579


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF  262 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~  262 (317)
                      .||+|+=++|-+.+.+.-+-++.=+.++|+++|....++  +....|.+.+.. +-+.+++-.|
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff  449 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYF  449 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecC
Confidence            999999999988887766656666778999998654433  455566666642 2233455544

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.96  E-value=0.0026  Score=59.68  Aligned_cols=111  Identities=20%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------C----ccccCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------N----YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|||.|.+|..+|..+...|. +|..+|.......             .    .....+.++ +++||+|+++.+..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999988775 8988887543210             0    011345666 79999999997732


Q ss_pred             hh-----------hhcccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHH--HHhCCceEEE--ee
Q 042102          211 EE-----------TQHIVN--RQVINALGPKGVLINIGRGLLVDEHELVSA--LLQGRLGGAG--LD  260 (317)
Q Consensus       211 ~~-----------t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~a--l~~g~i~ga~--lD  260 (317)
                      ..           +..++.  .+.+....+++++|+++-..=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            11           111221  122333457899999876443334444444  4455666665  66

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.95  E-value=0.0015  Score=57.40  Aligned_cols=61  Identities=11%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP  227 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~  227 (317)
                      ++++|||. |.||+.++..++..|+.|.                     +++||+|++|+|.... .     +.++.+. 
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~~~-~-----~~i~~~~-   52 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPIDAA-L-----NYIESYD-   52 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHHHH-H-----HHHHHhC-
Confidence            47999999 9999999999999999885                     4689999999995532 2     2333333 


Q ss_pred             CcEEEEeCCCc
Q 042102          228 KGVLINIGRGL  238 (317)
Q Consensus       228 gavlVN~~rg~  238 (317)
                       .+++|++.-.
T Consensus        53 -~~v~Dv~SvK   62 (197)
T PRK06444         53 -NNFVEISSVK   62 (197)
T ss_pred             -CeEEeccccC
Confidence             3788997633

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.94  E-value=0.0027  Score=60.10  Aligned_cols=82  Identities=21%  Similarity=0.217  Sum_probs=65.8

Q ss_pred             CeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          149 KSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      +++||||.|..++.-++.++. ++. +|.+|+|+++...          +  .....+.+++++.||+|+.+.|.++   
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---  207 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---  207 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence            489999999999999988864 666 6899999875421          1  2346789999999999999999775   


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                      .++..+.   +|||+.+..+|.
T Consensus       208 Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             CeecHhh---cCCCcEEEecCC
Confidence            6777766   479999999984

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.92  E-value=0.0058  Score=49.53  Aligned_cols=95  Identities=20%  Similarity=0.233  Sum_probs=56.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHhh-CCCEE-EEeCCCCCC-------------CCCccccCCHHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILGM-GRIGTAIAKRAEA-FDCII-GYNSRTEKP-------------NLNYKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~-~G~~V-~~~~~~~~~-------------~~~~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ++|+|+|+ |+||+.+++.+.. -|+++ .++++....             ..+.....++++++.++|+++-..  +++
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~   78 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD   78 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence            37999999 9999999999987 77885 466666521             122334578999999999887764  333


Q ss_pred             -hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          213 -TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       213 -t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                       +...+ +..   ++.|.-+|-...|---++.+.++.+
T Consensus        79 ~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~  112 (124)
T PF01113_consen   79 AVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEEL  112 (124)
T ss_dssp             HHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred             HhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHH
Confidence             22211 222   3345556655555533333444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.92  E-value=0.0017  Score=62.80  Aligned_cols=88  Identities=22%  Similarity=0.238  Sum_probs=65.8

Q ss_pred             CCeEEEEecChhHHHHHHHHhh-CC-C-EEEEeCCCCCCC----------C-C---ccccCCHHHhcccCCEEEEeccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEA-FD-C-IIGYNSRTEKPN----------L-N---YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~-~G-~-~V~~~~~~~~~~----------~-~---~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      -+++||||.|..++.-++.+.. +. . +|.+|+|++...          . +   .....+.++++++||+|+.+.+.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            3689999999999999888775 43 4 799999986431          0 1   223578999999999999998764


Q ss_pred             h---hhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          211 E---ETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       211 ~---~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      .   ++..+|..+.   +|||+.++.++.-+
T Consensus       235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e  262 (379)
T PRK06199        235 TGDPSTYPYVKREW---VKPGAFLLMPAACR  262 (379)
T ss_pred             CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence            3   3456777654   57999887776543

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.89  E-value=0.0016  Score=60.69  Aligned_cols=36  Identities=33%  Similarity=0.503  Sum_probs=34.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|+.+||+|+|.+|+.-.+.+++||++|+++|++.+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~  216 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK  216 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence            799999999999999999999999999999998763

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.86  E-value=0.0023  Score=58.57  Aligned_cols=110  Identities=16%  Similarity=0.211  Sum_probs=70.6

Q ss_pred             EEEEec-ChhHHHHHHHHhhCC----CEEEEeCCCCCCCCC----------------ccccCCHHHhcccCCEEEEeccC
Q 042102          151 VGILGM-GRIGTAIAKRAEAFD----CIIGYNSRTEKPNLN----------------YKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       151 vgIiG~-G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~----------------~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      |+|||. |.+|..++..+...|    .+|..+|...+...+                .....++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999998777    588889876543210                01134567889999999996422


Q ss_pred             C--h---------hhhcccc--HHHHhccCCCcEEEEeCCCcccCHH--HHHHH--HHhCCceEEE-eeCC
Q 042102          210 T--E---------ETQHIVN--RQVINALGPKGVLINIGRGLLVDEH--ELVSA--LLQGRLGGAG-LDVF  262 (317)
Q Consensus       210 ~--~---------~t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~--aL~~a--l~~g~i~ga~-lDV~  262 (317)
                      .  +         .+..++.  .+.+....|+++++|.+  ..+|.-  .+.+.  +...++.|.+ +|..
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence            1  1         0111111  12333445899999995  444443  34344  4567788888 7753

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.86  E-value=0.0059  Score=60.05  Aligned_cols=106  Identities=15%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEe-CCCC-----CC---------------C-CCcc-----ccCCHHH
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN-SRTE-----KP---------------N-LNYK-----YYPNLID  195 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~-----~~---------------~-~~~~-----~~~~l~e  195 (317)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|++. |.+.     +.               . .++.     ...+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            34689999999999999999999999999999876 4211     00               0 0000     0112333


Q ss_pred             hcc-cCCEEEEeccCChhhhccccHHHHhccC--CCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          196 LAS-NCQILVVACSLTEETQHIVNRQVINALG--PKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       196 l~~-~aDvV~~~lp~~~~t~~li~~~~l~~mk--~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++. .||+++-|..     .+.|+.+....++  .-.+++-.+-|.+ . ..-.+.|.++.|.
T Consensus       307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t-~~A~~~L~~rGI~  362 (445)
T PRK09414        307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-T-PEAIEVFLEAGVL  362 (445)
T ss_pred             ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-C-HHHHHHHHHCCcE
Confidence            333 6998888764     5668877777663  2345666777777 3 3455777777776

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.85  E-value=0.0025  Score=61.53  Aligned_cols=84  Identities=10%  Similarity=0.149  Sum_probs=59.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCCC---------------ccccCCHHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNLN---------------YKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ++|.|||.|.||+.+|..|..-| .+|++-||+..+...               ......+.+++++.|+|+.++|..- 
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~-   80 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV-   80 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence            58999999999999999999988 899999998543210               1112357788888899999888542 


Q ss_pred             hhccccHHHH-hccCCCcEEEEeCCCc
Q 042102          213 TQHIVNRQVI-NALGPKGVLINIGRGL  238 (317)
Q Consensus       213 t~~li~~~~l-~~mk~gavlVN~~rg~  238 (317)
                           +...+ ..++.|.-.++++-.+
T Consensus        81 -----~~~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          81 -----DLTILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             -----hHHHHHHHHHhCCCEEEcccCC
Confidence                 22333 3345666667766544

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.81  E-value=0.011  Score=56.68  Aligned_cols=131  Identities=10%  Similarity=0.162  Sum_probs=85.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------------CC-------------ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------------LN-------------YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~el~~~aDvV  203 (317)
                      ++|.|+|.|-+|...+..+..+|.+|+.+|..+.+-            ++             ..+..+.++.++.+|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            589999999999999999999999999998654320            10             22346788899999999


Q ss_pred             EEeccCChhhhcccc--------HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC-CCCCCCCCc----
Q 042102          204 VVACSLTEETQHIVN--------RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV-FEHEPDVPE----  270 (317)
Q Consensus       204 ~~~lp~~~~t~~li~--------~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV-~~~EP~~~~----  270 (317)
                      ++++|-.+.-.|-++        ++..+.++..+++|+=|.-.+=-.+.+.+-+....-.. -++| +.+|=+-..    
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~  159 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY  159 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence            999986655445444        34555677669999988755544444444443333211 2332 344444332    


Q ss_pred             ccCCCCceEE
Q 042102          271 ELIGLENVVL  280 (317)
Q Consensus       271 ~L~~~pnvi~  280 (317)
                      ..+..+++++
T Consensus       160 D~~~PdRIVi  169 (414)
T COG1004         160 DFLYPDRIVI  169 (414)
T ss_pred             hccCCCeEEE
Confidence            3555566664

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.79  E-value=0.0038  Score=59.58  Aligned_cols=85  Identities=9%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             CCeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      -++++|||.|..++.-++.+. -+.. +|.+|+|++....         +  .....++++++++||+|+++.|.+. ..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence            368999999999988877554 4555 6899999865421         1  2235789999999999999987432 22


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                      -+|..+.   +|||+.+.-+|.
T Consensus       208 Pvl~~~~---lkpG~hV~aIGs  226 (346)
T PRK07589        208 TILTDDM---VEPGMHINAVGG  226 (346)
T ss_pred             ceecHHH---cCCCcEEEecCC
Confidence            4566654   589998877764

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.78  E-value=0.0059  Score=57.21  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccCChhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      -+++||||.|..|+.-++.+.. +.. +|.+|+|++....          +  .....+.++++.+||+|+.+.+.+   
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~---  193 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD---  193 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence            4699999999999988877764 455 7999999865421          1  223568999999999999988844   


Q ss_pred             hccccHHHHhccCCCcEEEEeCCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ..+|..+.   +|||+.+.-+|..
T Consensus       194 ~P~~~~~~---l~pg~hV~aiGs~  214 (301)
T PRK06407        194 TPIFNRKY---LGDEYHVNLAGSN  214 (301)
T ss_pred             CcEecHHH---cCCCceEEecCCC
Confidence            46777664   5789887777653

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.77  E-value=0.0084  Score=50.79  Aligned_cols=89  Identities=9%  Similarity=0.152  Sum_probs=65.7

Q ss_pred             cCCeEEEEe--cChhHHHHHHHHhhCCCEEEEeCCCCC--CC----------------CCccccCCHHHhcccCCEEEEe
Q 042102          147 TGKSVGILG--MGRIGTAIAKRAEAFDCIIGYNSRTEK--PN----------------LNYKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       147 ~g~~vgIiG--~G~iG~~~a~~l~~~G~~V~~~~~~~~--~~----------------~~~~~~~~l~el~~~aDvV~~~  206 (317)
                      .|+||++||  -+++.++++..+..||+++.+..+..-  +.                .......++++.++++|+|..-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            488999999  389999999999999999988877551  11                0123457899999999998776


Q ss_pred             ccC----Chh-------hhccccHHHHhccCCCcEEEEeC
Q 042102          207 CSL----TEE-------TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       207 lp~----~~~-------t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      .-.    .+.       ....++++.++.+|++++|.-+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            443    111       11457899999999999999885

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.76  E-value=0.026  Score=55.49  Aligned_cols=106  Identities=13%  Similarity=0.102  Sum_probs=68.3

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CC--------------------c-----cccCC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LN--------------------Y-----KYYPN  192 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~--------------------~-----~~~~~  192 (317)
                      +.+|.|++|.|.|+|++|+..|+.|..+|++|++.+.+....     ..                    +     ....+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            457899999999999999999999999999998744321100     00                    0     00112


Q ss_pred             HHHhc-ccCCEEEEeccCChhhhccccHHHHhccCC-CcEEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          193 LIDLA-SNCQILVVACSLTEETQHIVNRQVINALGP-KGVLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       193 l~el~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk~-gavlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .++++ ..||+++-|.     +.+.|+++..+.++. |..+|-- +.| ++..++. +.|.++.|.
T Consensus       303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~  361 (444)
T PRK14031        303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL  361 (444)
T ss_pred             CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence            23332 4588777663     467889888888864 4444444 555 6665555 455555554

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.75  E-value=0.0022  Score=51.61  Aligned_cols=82  Identities=13%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             eEEEEe-cChhHHHHHHHHhh-CCCEEE-EeCCCCCCCCC----------c---cccCCHHHhcccCCEEEEeccCChhh
Q 042102          150 SVGILG-MGRIGTAIAKRAEA-FDCIIG-YNSRTEKPNLN----------Y---KYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       150 ~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~~~----------~---~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      +||||| .|.+|+.+.++|.. ..+++. +++++......          .   .....-.+.+..+|+|++|+|.....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            699999 99999999999976 345543 44544411110          0   00111223459999999998854332


Q ss_pred             hccccHHHHhccCCCcEEEEeCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      +  +....   .++|..+|+.+.
T Consensus        81 ~--~~~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   81 E--LAPKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             H--HHHHH---HHTTSEEEESSS
T ss_pred             H--HHHHH---hhCCcEEEeCCH
Confidence            2  22222   578999999874

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.75  E-value=0.0033  Score=53.25  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=36.7

Q ss_pred             ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      +|+.-+++|++|.|||.|.+|...++.|...|++|.++++.
T Consensus         5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719          5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            45667899999999999999999999999999999988654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.73  E-value=0.042  Score=48.58  Aligned_cols=42  Identities=12%  Similarity=0.145  Sum_probs=36.9

Q ss_pred             cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          141 KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      |+.-++.|++|.|||.|.+|..-++.|..+|++|.++++...
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            344568999999999999999999999999999999987543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.70  E-value=0.0023  Score=50.86  Aligned_cols=101  Identities=20%  Similarity=0.279  Sum_probs=64.3

Q ss_pred             eEEEEecChhHHHHHHHHhhC--CCEE-EEeCCCCCCC------CCccccCCHHHhcc--cCCEEEEeccCChhhhcccc
Q 042102          150 SVGILGMGRIGTAIAKRAEAF--DCII-GYNSRTEKPN------LNYKYYPNLIDLAS--NCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~--G~~V-~~~~~~~~~~------~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~  218 (317)
                      ++||||+|.+|+.....+...  ++++ .++|+++...      .+...+.+++++++  +.|+|+++.|......  +-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence            799999999999998888766  4565 4778765432      23446788999988  7999999999654322  12


Q ss_pred             HHHHhccCCC-cEEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          219 RQVINALGPK-GVLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       219 ~~~l~~mk~g-avlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ...   ++.| .+++.- ---.+-+.+.|.++.++.+..
T Consensus        80 ~~~---l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~  115 (120)
T PF01408_consen   80 KKA---LEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK  115 (120)
T ss_dssp             HHH---HHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred             HHH---HHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence            222   3333 444442 111333555666666555443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.69  E-value=0.0036  Score=55.16  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=33.4

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46899999999999999999999999998 78888765

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.64  E-value=0.034  Score=50.63  Aligned_cols=175  Identities=16%  Similarity=0.125  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-----------EEEE
Q 042102          108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-----------IIGY  176 (317)
Q Consensus       108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-----------~V~~  176 (317)
                      +|=-+++-+|+.+|-.                   +..|...++.|+|.|..|-.+|+.+...+.           +++.
T Consensus         4 TaaV~lAgllnAlk~~-------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~   64 (254)
T cd00762           4 TASVAVAGLLAALKVT-------------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWX   64 (254)
T ss_pred             hHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEE
Confidence            3445677777776632                   346788999999999999999999987665           5777


Q ss_pred             eCCCCC-----C-CC----C---c----cccCCHHHhcc--cCCEEEEeccCChhhhccccHHHHhccC---CCcEEEEe
Q 042102          177 NSRTEK-----P-NL----N---Y----KYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQVINALG---PKGVLINI  234 (317)
Q Consensus       177 ~~~~~~-----~-~~----~---~----~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk---~gavlVN~  234 (317)
                      +|+..-     . ..    .   +    ....+|.|+++  +.|+++-..-    ..|+|.++.++.|.   +.+++.=.
T Consensus        65 vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaL  140 (254)
T cd00762          65 VDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFAL  140 (254)
T ss_pred             ECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEEC
Confidence            776421     0 00    0   1    12358999999  9998876532    34789999999999   89999999


Q ss_pred             CCCccc---CHHHHHHHHHhCCceEEEeeCCCCCCCCCc---ccCCCCceEEcccCCCccHHH-----HHHHHHHHHHHH
Q 042102          235 GRGLLV---DEHELVSALLQGRLGGAGLDVFEHEPDVPE---ELIGLENVVLLPHVASATVET-----RKAMADLVVGNL  303 (317)
Q Consensus       235 ~rg~~v---d~~aL~~al~~g~i~ga~lDV~~~EP~~~~---~L~~~pnvi~tPH~a~~t~~~-----~~~~~~~~~~nl  303 (317)
                      |....-   ..++.+++=+...|.+.+.-.+..+-  +.   ..-+..|+++-|=++-..-.+     -+.|.-.+++.|
T Consensus       141 SNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~--~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aL  218 (254)
T cd00762         141 SNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL--NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAI  218 (254)
T ss_pred             CCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc--CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHH
Confidence            887663   33333333222234433221111111  11   244778999999877432211     244444445555


Q ss_pred             HHHH
Q 042102          304 QAHF  307 (317)
Q Consensus       304 ~~~~  307 (317)
                      -++.
T Consensus       219 A~~v  222 (254)
T cd00762         219 ASSV  222 (254)
T ss_pred             HhhC
Confidence            4443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.56  E-value=0.013  Score=53.28  Aligned_cols=88  Identities=18%  Similarity=0.298  Sum_probs=58.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPK  228 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g  228 (317)
                      .++-|+|.|.+++.+++.++.+|++|.++|..+.....        .....++.+....|          .+.+..+.++
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~--------~~~~~~~~~~~~~~----------~~~~~~~~~~  162 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE--------DLPDGVATLVTDEP----------EAEVAEAPPG  162 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc--------cCCCCceEEecCCH----------HHHHhcCCCC
Confidence            48999999999999999999999999998865431111        11123333222212          1222234567


Q ss_pred             cEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102          229 GVLINIGRGLLVDEHELVSALLQGRL  254 (317)
Q Consensus       229 avlVN~~rg~~vd~~aL~~al~~g~i  254 (317)
                      ..+|=+.++.-.|.+.|..+|.+...
T Consensus       163 t~vvi~th~h~~D~~~L~~aL~~~~~  188 (246)
T TIGR02964       163 SYFLVLTHDHALDLELCHAALRRGDF  188 (246)
T ss_pred             cEEEEEeCChHHHHHHHHHHHhCCCC
Confidence            77777778888898888888854444

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.53  E-value=0.075  Score=49.10  Aligned_cols=178  Identities=16%  Similarity=0.155  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhC----CC-------EEEE
Q 042102          108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF----DC-------IIGY  176 (317)
Q Consensus       108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~  176 (317)
                      +|=-+++-+|+.+|-.                   +..|...+|.|+|.|..|-.+|+.+...    |+       +++.
T Consensus         4 Ta~V~lAgllnAlk~~-------------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~   64 (279)
T cd05312           4 TAAVALAGLLAALRIT-------------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWL   64 (279)
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEE
Confidence            4455677777776643                   3467889999999999999999999876    76       6888


Q ss_pred             eCCCCC-----CCC-C----c----c--ccCCHHHhcc--cCCEEEEeccCChhhhccccHHHHhccC---CCcEEEEeC
Q 042102          177 NSRTEK-----PNL-N----Y----K--YYPNLIDLAS--NCQILVVACSLTEETQHIVNRQVINALG---PKGVLINIG  235 (317)
Q Consensus       177 ~~~~~~-----~~~-~----~----~--~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk---~gavlVN~~  235 (317)
                      +|+..-     ... .    +    .  ...+|.|+++  ++|+++-+--    .-|+|+++.++.|.   +.+++.=.|
T Consensus        65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLS  140 (279)
T cd05312          65 VDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALS  140 (279)
T ss_pred             EcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECC
Confidence            886521     100 0    0    1  2357999999  8898877522    24789999999998   899999999


Q ss_pred             CCcccCHHHHHHHHH--hCC-ceEEEeeCCCCCCCC-CcccCCCCceEEcccCCCccHH-----HHHHHHHHHHHHHHHH
Q 042102          236 RGLLVDEHELVSALL--QGR-LGGAGLDVFEHEPDV-PEELIGLENVVLLPHVASATVE-----TRKAMADLVVGNLQAH  306 (317)
Q Consensus       236 rg~~vd~~aL~~al~--~g~-i~ga~lDV~~~EP~~-~~~L~~~pnvi~tPH~a~~t~~-----~~~~~~~~~~~nl~~~  306 (317)
                      ....--|-.-.++.+  +|+ |.+.+.-.-+-+... ....-+..|+++-|=++-..-.     .-+.|...+++.|-++
T Consensus       141 NPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~  220 (279)
T cd05312         141 NPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASL  220 (279)
T ss_pred             CcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHh
Confidence            876533322223333  355 443331110001000 0134567899999987743221     1245555555555554


Q ss_pred             HC
Q 042102          307 FG  308 (317)
Q Consensus       307 ~~  308 (317)
                      ..
T Consensus       221 ~~  222 (279)
T cd05312         221 VT  222 (279)
T ss_pred             CC
Confidence            43

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.51  E-value=0.0081  Score=56.82  Aligned_cols=112  Identities=16%  Similarity=0.162  Sum_probs=67.2

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------C----ccccCCHHHhcccCCEEEEec
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------N----YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDvV~~~l  207 (317)
                      +..++|+|||.|.+|..+|..+...|. +|..+|.+++...             +    .....+. +.++.||+|+.+.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            455799999999999999999887785 8888997765210             0    0112455 5679999999975


Q ss_pred             cCCh----------------hhhcccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHHH--hCCceEEE
Q 042102          208 SLTE----------------ETQHIVN--RQVINALGPKGVLINIGRGLLVDEHELVSALL--QGRLGGAG  258 (317)
Q Consensus       208 p~~~----------------~t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~--~g~i~ga~  258 (317)
                      -...                .+..++.  .+.+....|.++++|++-..=+-...+.+...  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            2211                1111111  11233345778999987433222333333321  34666666

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.51  E-value=0.0078  Score=58.84  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=63.2

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc-----cccCCHHHhcccCCEEEEeccCChhhh--------
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY-----KYYPNLIDLASNCQILVVACSLTEETQ--------  214 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~el~~~aDvV~~~lp~~~~t~--------  214 (317)
                      .++|.|||+|.+|.++|+.|+..|++|.++|++.......     ......+....++|+|+.+.+..+...        
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            3689999999999999999999999999999765422110     011223344577998888765443211        


Q ss_pred             --ccccHHHH--hc--cCCC-cEEEEeCCCcccCHHHHHHHHHhC
Q 042102          215 --HIVNRQVI--NA--LGPK-GVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       215 --~li~~~~l--~~--mk~g-avlVN~~rg~~vd~~aL~~al~~g  252 (317)
                        .++....+  ..  +.+. .+=|--+.|..--.+-|.+.|+..
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence              12222121  11  2122 233444567777666777777653

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.51  E-value=0.017  Score=52.91  Aligned_cols=60  Identities=22%  Similarity=0.308  Sum_probs=44.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhC-CCEEE-EeCCCCCCC-----CCccccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAF-DCIIG-YNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .+|+|+|+ |.||+.+++.+... ++++. ++++.....     .+.....+++++++.+|+|+.++|
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence            48999998 99999999988764 68765 577654322     122345789999989999997765

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.50  E-value=0.0081  Score=54.60  Aligned_cols=104  Identities=16%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEe--------CCCCCC---------C-CC-cccc----------CCHH-
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN--------SRTEKP---------N-LN-YKYY----------PNLI-  194 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~--------~~~~~~---------~-~~-~~~~----------~~l~-  194 (317)
                      ++.|+++.|-|+|++|+.+|+.|...|++|++.        ++..-.         . .. ...+          .+-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            589999999999999999999999999998765        221100         0 00 0001          1121 


Q ss_pred             Hhc-ccCCEEEEeccCChhhhccccHHHHh-ccCCCcEEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          195 DLA-SNCQILVVACSLTEETQHIVNRQVIN-ALGPKGVLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       195 el~-~~aDvV~~~lp~~~~t~~li~~~~l~-~mk~gavlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +++ ..||+++.|.     ..+.|+++... .++.++-+|-- +.+.+ ..++.. .|.+..|.
T Consensus       109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGIL  165 (244)
T ss_dssp             HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-E
T ss_pred             ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCE
Confidence            444 5899999882     35678888888 88877665554 55555 455554 88888886

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.50  E-value=0.011  Score=53.97  Aligned_cols=96  Identities=22%  Similarity=0.189  Sum_probs=66.1

Q ss_pred             ccccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCC-----------CCCccccCCHHHhcccCCEEEEeccC
Q 042102          142 MTTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKP-----------NLNYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       142 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      +|.+++..|++|+|+ |.||..+|+-|.+.+++....-|....           ..+.....+++..+.+.|+++.....
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~  240 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM  240 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence            578899999999997 999999999999988866544432211           11223345666666666655544332


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCCCcccCH
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      .  +-..|+...   +|||+++|+-++..=||+
T Consensus       241 ~--~g~~I~pq~---lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         241 P--KGVEIFPQH---LKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             C--CCceechhh---ccCCeEEEcCCcCccccc
Confidence            2  334577755   699999999998877775

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.48  E-value=0.059  Score=53.04  Aligned_cols=155  Identities=13%  Similarity=0.099  Sum_probs=90.2

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEE--------eCCCCCCC-C--------------------Cc--cccC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY--------NSRTEKPN-L--------------------NY--KYYP  191 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~--------~~~~~~~~-~--------------------~~--~~~~  191 (317)
                      +.++.|+||.|=|+|++|+.+|+.|..+|++|++        |++..-.. .                    .+  ....
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            4568999999999999999999999999999987        45321100 0                    00  0011


Q ss_pred             CHHHhc-ccCCEEEEeccCChhhhccccHHHHhccC-C-CcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC
Q 042102          192 NLIDLA-SNCQILVVACSLTEETQHIVNRQVINALG-P-KGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV  268 (317)
Q Consensus       192 ~l~el~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk-~-gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~  268 (317)
                      +.++++ ..||+++-|.     +.+.|+++..+.+. . -.+++--+-+ ++..++- +.|.+..|. ++=|+.-+-=..
T Consensus       303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGGV  374 (445)
T PRK14030        303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGGV  374 (445)
T ss_pred             CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCCe
Confidence            223333 3588777663     57788888887773 2 3445666667 5655543 667777776 333433221100


Q ss_pred             CcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHH
Q 042102          269 PEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF  307 (317)
Q Consensus       269 ~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~  307 (317)
                        -...++-+--.-|.-|..++..+++.+.+.+.+.+.+
T Consensus       375 --ivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~  411 (445)
T PRK14030        375 --ATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCV  411 (445)
T ss_pred             --eeehhhhhccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence              0011111122245556666666666666665555544

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.46  E-value=0.0025  Score=59.19  Aligned_cols=65  Identities=12%  Similarity=0.118  Sum_probs=47.2

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC----------cccc---CCHHHhcccCCEEEEeccCC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN----------YKYY---PNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~----------~~~~---~~l~el~~~aDvV~~~lp~~  210 (317)
                      +.|+++.|||.|.+|++++..|...|+ +|.+++|+..+...          ....   .++.+.+.++|+|+.+.|..
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            678899999999999999999999998 69999997543210          0001   12334556778888887754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.45  E-value=0.026  Score=55.51  Aligned_cols=106  Identities=13%  Similarity=0.084  Sum_probs=67.7

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC-----CCC-------------------CCcc------ccC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE-----KPN-------------------LNYK------YYP  191 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-----~~~-------------------~~~~------~~~  191 (317)
                      +.++.|+||.|=|+|++|+.+|+.|..+|++|+ +.|.+.     +..                   ..+.      ...
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            456899999999999999999999999999988 444431     000                   0000      001


Q ss_pred             CHHHhc-ccCCEEEEeccCChhhhccccHHHHhcc-CCCcEEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          192 NLIDLA-SNCQILVVACSLTEETQHIVNRQVINAL-GPKGVLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       192 ~l~el~-~~aDvV~~~lp~~~~t~~li~~~~l~~m-k~gavlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +.++++ -.||+.+-|.     +.+.|+.+..+.+ +.++.+|-= +-+.+-. + -.+.|++..|.
T Consensus       312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~  371 (454)
T PTZ00079        312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI  371 (454)
T ss_pred             CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE
Confidence            112222 3688777663     5778888877766 556665554 4555543 3 44667777775

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.42  E-value=0.017  Score=53.70  Aligned_cols=37  Identities=22%  Similarity=0.277  Sum_probs=33.4

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCC
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~  181 (317)
                      .+.|+++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            36789999999999999999999999995 99999875

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.42  E-value=0.012  Score=55.08  Aligned_cols=92  Identities=20%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------------Cc--cccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------------NY--KYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~~--~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+|||.|.+|+.+|..|...|.  +|..+|+..+...             ..  .....-.+.++.||+|+++.....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            489999999999999999998884  7999998665321             00  011122345789999999876421


Q ss_pred             h---hh--------cccc--HHHHhccCCCcEEEEeCCCcccCH
Q 042102          212 E---TQ--------HIVN--RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       212 ~---t~--------~li~--~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      .   ++        .++.  .+.+....|.+++++++  ..+|.
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~  122 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV  122 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence            1   11        1111  12344456789999986  44443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.41  E-value=0.012  Score=56.79  Aligned_cols=102  Identities=17%  Similarity=0.291  Sum_probs=70.2

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------------------C------CCccccCCHHHhc-
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------------------N------LNYKYYPNLIDLA-  197 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------------------~------~~~~~~~~l~el~-  197 (317)
                      +.+|.|+||.|=|+|++|+.+|+.|...|.+|++.+.+...                  .      .+... .+-++++ 
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~-i~~~e~~~  280 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEY-ITNEELLE  280 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceE-cccccccc
Confidence            34589999999999999999999999999999887765430                  0      01111 1224443 


Q ss_pred             ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          198 SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       198 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      ..||+++-|     ++.+.|+.+..+++|-. +++--+.|++-. ++--..++.|
T Consensus       281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~-eA~~i~~erG  328 (411)
T COG0334         281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTP-EADEILLERG  328 (411)
T ss_pred             ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCH-HHHHHHHHCC
Confidence            468876655     35778998888888865 777888888653 3333333444

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.41  E-value=0.0075  Score=57.43  Aligned_cols=37  Identities=27%  Similarity=0.291  Sum_probs=33.2

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46899999999999999999999999998 78877764

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.38  E-value=0.032  Score=53.96  Aligned_cols=179  Identities=15%  Similarity=0.142  Sum_probs=112.2

Q ss_pred             hCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCC
Q 042102           92 EKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD  171 (317)
Q Consensus        92 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G  171 (317)
                      +..|+|.|..=   .-+|=.+++.+++.+|-.                   ++.|+..+|.+.|.|..|-.+++.+++.|
T Consensus       165 ~~~IPvFhDDq---qGTaiv~lA~llnalk~~-------------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g  222 (432)
T COG0281         165 RMNIPVFHDDQ---QGTAIVTLAALLNALKLT-------------------GKKLKDQKIVINGAGAAGIAIADLLVAAG  222 (432)
T ss_pred             cCCCCcccccc---cHHHHHHHHHHHHHHHHh-------------------CCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence            35788888754   334555677777765433                   56788999999999999999999999999


Q ss_pred             C---EEEEeCCCCCC---CC-----Ccc---------ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEE
Q 042102          172 C---IIGYNSRTEKP---NL-----NYK---------YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVL  231 (317)
Q Consensus       172 ~---~V~~~~~~~~~---~~-----~~~---------~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl  231 (317)
                      +   +|+.+|+..--   ..     ...         .... ++.+..+|+++-+--     .|.|.++.++.|.+.+++
T Consensus       223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma~~PiI  296 (432)
T COG0281         223 VKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMAKHPII  296 (432)
T ss_pred             CCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhccCCEE
Confidence            8   58888865211   10     000         0111 457889998776622     289999999999999999


Q ss_pred             EEeCCCcccCHHHHHHHHHhC-CceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH-----HHHHHHHHHHHHHH
Q 042102          232 INIGRGLLVDEHELVSALLQG-RLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET-----RKAMADLVVGNLQA  305 (317)
Q Consensus       232 VN~~rg~~vd~~aL~~al~~g-~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~-----~~~~~~~~~~nl~~  305 (317)
                      .=+|....--....+.....| .|-+.      ..|..|.   +..|+++-|-++-.--.+     -+.|.-.+++-|-.
T Consensus       297 falaNP~pEi~Pe~a~~~~~~aaivaT------Grsd~Pn---QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~  367 (432)
T COG0281         297 FALANPTPEITPEDAKEWGDGAAIVAT------GRSDYPN---QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD  367 (432)
T ss_pred             eecCCCCccCCHHHHhhcCCCCEEEEe------CCCCCcc---cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence            988876532111112222222 34322      2222222   888999999987432222     24444444555555


Q ss_pred             HH
Q 042102          306 HF  307 (317)
Q Consensus       306 ~~  307 (317)
                      +.
T Consensus       368 ~~  369 (432)
T COG0281         368 LA  369 (432)
T ss_pred             hc
Confidence            43

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.37  E-value=0.014  Score=55.06  Aligned_cols=89  Identities=16%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC--------------ccccCCHHHhcccCCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN--------------YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      .+++|+|||.|.+|..+|-.+...|.  ++..+|.......+              .....+-.+.+++||+|+++.-..
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~   84 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP   84 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence            56799999999999999999988887  78899976543210              011112345689999999875431


Q ss_pred             h---hhh--------cccc--HHHHhccCCCcEEEEeC
Q 042102          211 E---ETQ--------HIVN--RQVINALGPKGVLINIG  235 (317)
Q Consensus       211 ~---~t~--------~li~--~~~l~~mk~gavlVN~~  235 (317)
                      .   .++        .++.  .+.+..-.+.+++++++
T Consensus        85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            1   111        1111  11222234688999987

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.32  E-value=0.0012  Score=58.68  Aligned_cols=117  Identities=21%  Similarity=0.231  Sum_probs=74.2

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------------------C--c-------------cccC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------------------N--Y-------------KYYP  191 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~--~-------------~~~~  191 (317)
                      -.-+.|+|||.|.||+.+|+.+..-|..|..+|++.+...                   .  .             ....
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            3446899999999999999999999999999998764310                   0  0             0123


Q ss_pred             CHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 042102          192 NLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVL-INIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP  266 (317)
Q Consensus       192 ~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP  266 (317)
                      ++.++++.+|+|+=++--+-..+.-+-++.=..+|+.+++ -|+|+   .....+..+++.... .++|-.|.+-|
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP  160 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP  160 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch
Confidence            4556667777666554433333322223333346777776 46655   344556666655444 46888887655

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.31  E-value=0.061  Score=50.49  Aligned_cols=90  Identities=10%  Similarity=0.145  Sum_probs=64.2

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----------CC--ccccCCHHHhcccCCEEEEec----
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----------LN--YKYYPNLIDLASNCQILVVAC----  207 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----------~~--~~~~~~l~el~~~aDvV~~~l----  207 (317)
                      +.|++|+++|= +++.++.+..+..+|++|.+..+..-..           .+  .....++++.++++|+|..-.    
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~  229 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM  229 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence            78899999998 7899999999999999998887643211           11  223578999999999998741    


Q ss_pred             cCC---hh-----hhccccHHHHhccCCCcEEEEeC
Q 042102          208 SLT---EE-----TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       208 p~~---~~-----t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ...   .+     -..-++++.++.+|++++|.-+.
T Consensus       230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl  265 (304)
T PRK00779        230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL  265 (304)
T ss_pred             ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence            110   11     12345777777788888777764

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.31  E-value=0.0071  Score=53.68  Aligned_cols=89  Identities=18%  Similarity=0.237  Sum_probs=61.8

Q ss_pred             ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------C---ccccCCHHHhcccCCEEEEeccC
Q 042102          140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------N---YKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~---~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      .+..-++.|++|.|||.|.+|..=++.+...|++|+++++...+..       .   .....+.++ +..+++|+.+++.
T Consensus         4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d   82 (210)
T COG1648           4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDD   82 (210)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCC
Confidence            3456689999999999999999999999999999999987662210       0   011122333 3337888877664


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEe
Q 042102          210 TEETQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~  234 (317)
                      .+     +|++.+..+++-.++||+
T Consensus        83 ~~-----ln~~i~~~a~~~~i~vNv  102 (210)
T COG1648          83 EE-----LNERIAKAARERRILVNV  102 (210)
T ss_pred             HH-----HHHHHHHHHHHhCCceec
Confidence            33     456666666666677776

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.28  E-value=0.0084  Score=53.78  Aligned_cols=88  Identities=15%  Similarity=0.205  Sum_probs=58.4

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC-------------CCC-----------------c--c--
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP-------------NLN-----------------Y--K--  188 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~--~--  188 (317)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|...-.             ..+                 .  .  
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46889999999999999999999999998 67777643210             000                 0  0  


Q ss_pred             --c--cCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          189 --Y--YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       189 --~--~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                        .  ..++.++++++|+|+.|+. +.+++.++++...+   .+.-+|..+
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence              0  1234567888998887765 55666666654443   344566654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.27  E-value=0.03  Score=52.55  Aligned_cols=89  Identities=9%  Similarity=0.156  Sum_probs=61.9

Q ss_pred             ccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCCCCCC---CCccccCCHHHhcccCCEEEEeccCC--------h
Q 042102          146 FTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRTEKPN---LNYKYYPNLIDLASNCQILVVACSLT--------E  211 (317)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~~~~~l~el~~~aDvV~~~lp~~--------~  211 (317)
                      +.|++|+++|=   +++.++++..+..||+++.+..+..-..   .......+++++++.+|+|....=..        +
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~  233 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLP  233 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccchH
Confidence            78999999998   5899999999999999998887644221   11234678999999999887743110        0


Q ss_pred             h-----hhccccHHHHhccCCCcEEEEe
Q 042102          212 E-----TQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       212 ~-----t~~li~~~~l~~mk~gavlVN~  234 (317)
                      +     -...++++.++.+|++++|.-+
T Consensus       234 ~~~~~~~~y~v~~~ll~~a~~~~~~mHc  261 (305)
T PRK00856        234 SYEEYKRSYGLTAERLALAKPDAIVMHP  261 (305)
T ss_pred             HHHHHhccCccCHHHHhhcCCCCEEECC
Confidence            0     0123456666666666666655

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.21  E-value=0.0091  Score=57.51  Aligned_cols=58  Identities=22%  Similarity=0.361  Sum_probs=44.2

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC----cc---ccC---CHHHhcccCCEEEE
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN----YK---YYP---NLIDLASNCQILVV  205 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----~~---~~~---~l~el~~~aDvV~~  205 (317)
                      .++|||||.|..|+.++..++.+|++|+++++.+.....    ..   .+.   .+.++++.||+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            378999999999999999999999999999886544211    00   122   36678889998764

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.0096  Score=58.94  Aligned_cols=108  Identities=12%  Similarity=0.092  Sum_probs=66.8

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CCccc--cCCHHHhcccCCEEEEeccCChh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKY--YPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~--~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      -+.+++|+|+|+|..|.++|+.|+..|++|.++|......          .+...  .....+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            4678899999999999999999999999999999764321          11111  11223546789988887 43222


Q ss_pred             hh-----------ccccHH-HHhcc-CCCcEEEEeCCCcccCHHHHHHHHHhCC
Q 042102          213 TQ-----------HIVNRQ-VINAL-GPKGVLINIGRGLLVDEHELVSALLQGR  253 (317)
Q Consensus       213 t~-----------~li~~~-~l~~m-k~gavlVN~~rg~~vd~~aL~~al~~g~  253 (317)
                      +.           .++++- .+.+. +...+-|--+.|..--.+-+.+.|....
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            11           122221 22222 2223344445688777777777776533

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.19  E-value=0.13  Score=53.98  Aligned_cols=157  Identities=12%  Similarity=0.105  Sum_probs=105.8

Q ss_pred             CCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC
Q 042102           93 KGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC  172 (317)
Q Consensus        93 ~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~  172 (317)
                      ..|+|.|..-   .-+|=-+++.+++.+|-.                   ++.+...+|.|.|.|..|-.+++.+...|.
T Consensus       152 ~~ip~f~DD~---~GTa~v~lA~l~na~~~~-------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  209 (752)
T PRK07232        152 MDIPVFHDDQ---HGTAIISAAALLNALELV-------------------GKKIEDVKIVVSGAGAAAIACLNLLVALGA  209 (752)
T ss_pred             cCCCeecccc---chHHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence            3689988743   334555777777776633                   346888899999999999999999999998


Q ss_pred             ---EEEEeCCCCC----C---CCC-------ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          173 ---IIGYNSRTEK----P---NLN-------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       173 ---~V~~~~~~~~----~---~~~-------~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                         +++.+|+..-    .   ...       .....+|.|+++.+|+++-. .    +.|+|.++.++.|.+.+++.=.|
T Consensus       210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals  284 (752)
T PRK07232        210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALA  284 (752)
T ss_pred             CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecC
Confidence               6888886421    1   000       01235899999999977654 2    24899999999999999999998


Q ss_pred             CCccc-CHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCC
Q 042102          236 RGLLV-DEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVAS  286 (317)
Q Consensus       236 rg~~v-d~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~  286 (317)
                      ....- ..+..+ ....|.|.+.+   -...      .-+..|+++-|-++-
T Consensus       285 NP~~E~~p~~a~-~~~~~~i~atG---rs~~------pnQ~NN~~~FPgi~~  326 (752)
T PRK07232        285 NPDPEITPEEAK-AVRPDAIIATG---RSDY------PNQVNNVLCFPYIFR  326 (752)
T ss_pred             CCCccCCHHHHH-HhcCCEEEEEC---CcCC------CCcccceeecchhhH
Confidence            87752 222222 22223454433   1111      235668888886653

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.17  E-value=0.023  Score=53.15  Aligned_cols=58  Identities=16%  Similarity=0.206  Sum_probs=42.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC---------------cc--ccCCHHHhcccCCEEEEec
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN---------------YK--YYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~---------------~~--~~~~l~el~~~aDvV~~~l  207 (317)
                      ++|+|||.|.+|..+|..+...|. +|..+|..++...+               ..  ...+. +.++.||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence            589999999999999999987664 89989875532100               00  12345 4579999999985

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.16  E-value=0.0096  Score=49.21  Aligned_cols=85  Identities=14%  Similarity=0.232  Sum_probs=49.8

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcE
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV  230 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gav  230 (317)
                      +-|+|.|.+++++++.++.+|++|.++|+.++.             +..++-+. +.+. ++..     +.+ .+.++..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~-~~~~-----~~~-~~~~~t~   59 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP-DDIL-----EDL-EIDPNTA   59 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH-HHHH-----HHC--S-TT-E
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh-HHHH-----hcc-CCCCCeE
Confidence            468999999999999999999999998876431             12334322 2221 1111     111 3556666


Q ss_pred             EEEeCCCcccCHHHHHHHHHhCCceEEE
Q 042102          231 LINIGRGLLVDEHELVSALLQGRLGGAG  258 (317)
Q Consensus       231 lVN~~rg~~vd~~aL~~al~~g~i~ga~  258 (317)
                      +| +.++.-.|.+.|.++|++ +....+
T Consensus        60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG   85 (136)
T PF13478_consen   60 VV-MTHDHELDAEALEAALAS-PARYIG   85 (136)
T ss_dssp             EE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred             EE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence            66 788888999888888877 444343

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.13  E-value=0.061  Score=50.05  Aligned_cols=109  Identities=12%  Similarity=0.155  Sum_probs=76.5

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC--CCCCCCccccCCHHHhcccCCEEEEeccCChhhh---------c-
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT--EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQ---------H-  215 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~---------~-  215 (317)
                      |++++|||.=.=-..+++.|...|++|..+.-.  .....+.......++.++++|+|++=+|.+....         . 
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~   80 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV   80 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence            679999998888889999999999987655432  2223344455566677999999999999765421         1 


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFE  263 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~  263 (317)
                      .++++.+++|+++++ +-+|    ++..++-++.++..|.  ..|.++
T Consensus        81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~  121 (287)
T TIGR02853        81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE  121 (287)
T ss_pred             cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence            246889999997665 4444    3445666677778876  554443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.13  E-value=0.02  Score=54.73  Aligned_cols=82  Identities=15%  Similarity=0.187  Sum_probs=53.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhC-CCEEE-EeCCCC--CCCC--------Cc-c-cc--CCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAF-DCIIG-YNSRTE--KPNL--------NY-K-YY--PNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~--~~~~--------~~-~-~~--~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+|+|. |.+|+.+++.|... +.++. .+++..  .+..        .. . ..  .+.++++.++|+|++|+|...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            47999998 99999999999977 56776 334322  1110        00 0 01  245566678999999999553


Q ss_pred             hhhccccHHHHhc-cCCCcEEEEeCC
Q 042102          212 ETQHIVNRQVINA-LGPKGVLINIGR  236 (317)
Q Consensus       212 ~t~~li~~~~l~~-mk~gavlVN~~r  236 (317)
                      .      ++.... .+.|..+|+.|.
T Consensus        81 s------~~~~~~~~~~G~~VIDlS~  100 (346)
T TIGR01850        81 S------AELAPELLAAGVKVIDLSA  100 (346)
T ss_pred             H------HHHHHHHHhCCCEEEeCCh
Confidence            2      333332 256888998873

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.12  E-value=0.099  Score=49.74  Aligned_cols=91  Identities=10%  Similarity=0.100  Sum_probs=64.1

Q ss_pred             cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCC-CC-------------CC--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEK-PN-------------LN--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~-~~-------------~~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|++|++||=+  ++.++.+..+..+|++|.+..+..- +.             .+  +....++++.+++||+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            3789999999986  6788889999999999988776421 11             11  22357899999999999873


Q ss_pred             c----cCC-h---h-----hhccccHHHHhcc-CCCcEEEEeC
Q 042102          207 C----SLT-E---E-----TQHIVNRQVINAL-GPKGVLINIG  235 (317)
Q Consensus       207 l----p~~-~---~-----t~~li~~~~l~~m-k~gavlVN~~  235 (317)
                      .    ... +   +     ....++++.++.. |++++|.-+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            2    110 0   1     1223677888876 7888888774

>PRK12862 malic enzyme; Reviewed

Probab=96.10  E-value=0.068  Score=56.15  Aligned_cols=156  Identities=10%  Similarity=0.104  Sum_probs=105.5

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-
Q 042102           94 GIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-  172 (317)
Q Consensus        94 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-  172 (317)
                      .|++.|..-   .-+|=.+++.+++.+|-.                   ++.+...+|.|.|.|..|-.+|+.+...|. 
T Consensus       161 ~ip~f~DD~---~GTa~v~la~l~~a~~~~-------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  218 (763)
T PRK12862        161 KIPVFHDDQ---HGTAIIVAAALLNGLKLV-------------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK  218 (763)
T ss_pred             CCceEecCc---ccHHHHHHHHHHHHHHHh-------------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence            699999843   334555677777776533                   356888999999999999999999999998 


Q ss_pred             --EEEEeCCCC-----CC--CCC-------ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          173 --IIGYNSRTE-----KP--NLN-------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       173 --~V~~~~~~~-----~~--~~~-------~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                        +++.+|+..     ..  ...       .....+|.|+++.+|+++-.--     .|+|+++.++.|.+.+++.=.|.
T Consensus       219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v~~M~~~piifalsN  293 (763)
T PRK12862        219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSA-----AGVLKPEMVKKMAPRPLIFALAN  293 (763)
T ss_pred             cccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCCEEEeCCC
Confidence              688888542     11  000       0123579999999998776421     47999999999999999999988


Q ss_pred             Cccc-CHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCC
Q 042102          237 GLLV-DEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVAS  286 (317)
Q Consensus       237 g~~v-d~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~  286 (317)
                      ...- ..+..++ ...|.|.+.+-   ..      -.-+..|+++-|=++-
T Consensus       294 P~~E~~p~~a~~-~~~~~i~atGr---s~------~p~Q~NN~~~FPgi~~  334 (763)
T PRK12862        294 PTPEILPEEARA-VRPDAIIATGR---SD------YPNQVNNVLCFPYIFR  334 (763)
T ss_pred             CcccCCHHHHHH-hcCCEEEEECC---cC------CCCcccceeeccchhh
Confidence            7642 2222222 22234544331   11      1235668888887763

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.08  E-value=0.041  Score=51.24  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=33.2

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCC
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  181 (317)
                      .+.|+++.|+|.|..+++++..|...|+ +|.+++|+.
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4678999999999999999999988897 799999975

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.05  E-value=0.013  Score=53.22  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=31.9

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ..|.+++|+|||+|.+|..+++.|...|. ++.++|.
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   64 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF   64 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46899999999999999999999999997 6777664

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.04  E-value=0.076  Score=50.06  Aligned_cols=90  Identities=9%  Similarity=0.031  Sum_probs=66.5

Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCC-----------------------CC-------------ccccC--CHHHhcccC
Q 042102          159 IGTAIAKRAEAFDCIIGYNSRTEKPN-----------------------LN-------------YKYYP--NLIDLASNC  200 (317)
Q Consensus       159 iG~~~a~~l~~~G~~V~~~~~~~~~~-----------------------~~-------------~~~~~--~l~el~~~a  200 (317)
                      ||..+|..+...|++|..+|++++..                       .+             .....  +..+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            68899999999999999999877310                       00             00111  255788999


Q ss_pred             CEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      |+|+-++|.+.+.+.-+-++..+.++++++|..  .-+......|.+.+.
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcC
Confidence            999999999999888777777788999999844  444456667777663

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.03  E-value=0.015  Score=57.11  Aligned_cols=61  Identities=8%  Similarity=0.048  Sum_probs=44.2

Q ss_pred             CeEEEEecChhHHHHHH---HH---hhCCCEEEEeCCCCCCCC-----------------CccccCCHHHhcccCCEEEE
Q 042102          149 KSVGILGMGRIGTAIAK---RA---EAFDCIIGYNSRTEKPNL-----------------NYKYYPNLIDLASNCQILVV  205 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~---~l---~~~G~~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~aDvV~~  205 (317)
                      .+|+|||.|.+|...+-   .+   ...|.+|..+|+.+....                 ......++.+.++.||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            37999999999998554   22   334568999998764210                 11124678899999999999


Q ss_pred             eccC
Q 042102          206 ACSL  209 (317)
Q Consensus       206 ~lp~  209 (317)
                      +.|.
T Consensus        81 ai~~   84 (423)
T cd05297          81 TIQV   84 (423)
T ss_pred             eeEe
Confidence            9983

linked to 3D####ucture

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.02  E-value=0.12  Score=49.16  Aligned_cols=91  Identities=10%  Similarity=0.061  Sum_probs=65.5

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--------------CC--ccccCCHHHhcccCCEEEEec
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--------------LN--YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~el~~~aDvV~~~l  207 (317)
                      .+.|++|+++|= .++.++.+..+..+|++|.+..+..-..              .+  .....++++.++++|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            488999999997 6788888999999999998887643211              01  223578999999999998832


Q ss_pred             -----cCC---hh------hhccccHHHHhccCCCcEEEEeC
Q 042102          208 -----SLT---EE------TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       208 -----p~~---~~------t~~li~~~~l~~mk~gavlVN~~  235 (317)
                           ...   ++      ....++++.++.+|++++|.-+.
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL  272 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL  272 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence                 110   01      12456788888888888887774

>PRK12861 malic enzyme; Reviewed

Probab=96.02  E-value=0.073  Score=55.72  Aligned_cols=155  Identities=11%  Similarity=0.083  Sum_probs=105.4

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-
Q 042102           94 GIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-  172 (317)
Q Consensus        94 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-  172 (317)
                      .|+++|..-   .-+|=.+++.+++.+|-.                   ++.+...+|.|.|.|..|..+++.+...|. 
T Consensus       157 ~ipvf~DD~---qGTa~v~lA~llnal~~~-------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~  214 (764)
T PRK12861        157 KIPVFHDDQ---HGTAITVSAAFINGLKVV-------------------GKSIKEVKVVTSGAGAAALACLDLLVDLGLP  214 (764)
T ss_pred             CCCeecccc---chHHHHHHHHHHHHHHHh-------------------CCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence            799999843   334555777788776633                   356888899999999999999999999998 


Q ss_pred             --EEEEeCCCC-----CCC--CC-------ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          173 --IIGYNSRTE-----KPN--LN-------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       173 --~V~~~~~~~-----~~~--~~-------~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                        +++.+|+..     ...  ..       .....+|.|+++.+|+++-. .    ..|+|.++.++.|.+.+++.=.|.
T Consensus       215 ~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PIIFaLsN  289 (764)
T PRK12861        215 VENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPLILALAN  289 (764)
T ss_pred             hhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCEEEECCC
Confidence              688888532     110  00       01235899999999977654 2    248999999999999999999988


Q ss_pred             Cccc-CHHHHHHHHHhCC-ceEEEeeCCCCCCCCCcccCCCCceEEcccCCC
Q 042102          237 GLLV-DEHELVSALLQGR-LGGAGLDVFEHEPDVPEELIGLENVVLLPHVAS  286 (317)
Q Consensus       237 g~~v-d~~aL~~al~~g~-i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~  286 (317)
                      ...- ..+..+ + ..|+ |.+.+      .   ....-+..|+++-|=++-
T Consensus       290 PtpE~~pe~a~-~-~~g~aivaTG------r---s~~pnQ~NN~l~FPgi~~  330 (764)
T PRK12861        290 PTPEIFPELAH-A-TRDDVVIATG------R---SDYPNQVNNVLCFPYIFR  330 (764)
T ss_pred             CCccCCHHHHH-h-cCCCEEEEeC------C---cCCCCccceeeecchhhH
Confidence            6642 112222 2 2344 43221      1   112245679999997763

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.00  E-value=0.073  Score=52.66  Aligned_cols=110  Identities=24%  Similarity=0.277  Sum_probs=77.4

Q ss_pred             cccCCeEEEEec----ChhHHHHHHHHhhCCC--EEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          145 KFTGKSVGILGM----GRIGTAIAKRAEAFDC--IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       145 ~l~g~~vgIiG~----G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      -++-++|+|||.    |.+|..+.+.++..|+  +|+..++......+...+.+++++-...|++++++|... +..++.
T Consensus         4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~-~~~~l~   82 (447)
T TIGR02717         4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKY-VPQVVE   82 (447)
T ss_pred             ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHH-HHHHHH
Confidence            367789999999    8899999999998887  688888776555666678899999888999999999443 333332


Q ss_pred             HHHHhccCCCcE-EEEeCCCcc-----cCHHHHHHHHHhCCceEE
Q 042102          219 RQVINALGPKGV-LINIGRGLL-----VDEHELVSALLQGRLGGA  257 (317)
Q Consensus       219 ~~~l~~mk~gav-lVN~~rg~~-----vd~~aL~~al~~g~i~ga  257 (317)
                       +..+ .+-.++ ++.-+-++.     ..++.+.+..+++.++-.
T Consensus        83 -e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        83 -ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             -HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence             2222 333344 444333332     235788888888877733

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.99  E-value=0.037  Score=54.00  Aligned_cols=86  Identities=15%  Similarity=0.173  Sum_probs=62.6

Q ss_pred             ccCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--CccccCCHHHhcccCCEEEEeccCChhh
Q 042102          146 FTGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--NYKYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       146 l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      +.|++|+|+|+          ..-...+++.|...|++|.+||+......  ......++++.++.+|.|+++.+..+ -
T Consensus       311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~-~  389 (411)
T TIGR03026       311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE-F  389 (411)
T ss_pred             ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH-H
Confidence            68999999998          55778999999999999999998753321  11124688899999999999987554 2


Q ss_pred             hccccHHHHhc-cCCCcEEEEe
Q 042102          214 QHIVNRQVINA-LGPKGVLINI  234 (317)
Q Consensus       214 ~~li~~~~l~~-mk~gavlVN~  234 (317)
                      +. ++-+.+.. |+ ..++||+
T Consensus       390 ~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       390 KD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             hc-cCHHHHHHhcC-CCEEEeC
Confidence            22 34444443 54 5578874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=95.97  E-value=0.1  Score=49.05  Aligned_cols=90  Identities=10%  Similarity=0.145  Sum_probs=64.0

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--------------CC--ccccCCHHHhcccCCEEEEec-
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--------------LN--YKYYPNLIDLASNCQILVVAC-  207 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~el~~~aDvV~~~l-  207 (317)
                      +.|.+|+++|= +++-++.+..+..||++|.+..+..-..              .+  .....++++.+++||+|..-. 
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w  225 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW  225 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            78999999997 6888999999999999998877543211              11  223578999999999998742 


Q ss_pred             -cCC-----hh-----hhccccHHHHhccCCCcEEEEeC
Q 042102          208 -SLT-----EE-----TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       208 -p~~-----~~-----t~~li~~~~l~~mk~gavlVN~~  235 (317)
                       ...     ++     ....++++.++.+|+++++.-+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL  264 (304)
T ss_pred             ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence             100     01     12346778888888888877764

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.96  E-value=0.018  Score=52.12  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46889999999999999999999999997 67776653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.95  E-value=0.0091  Score=53.56  Aligned_cols=64  Identities=19%  Similarity=0.194  Sum_probs=48.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------Ccc-------ccCCHHHh-cccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------NYK-------YYPNLIDL-ASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~-------~~~~l~el-~~~aDvV~~~lp~~~~  212 (317)
                      +++.|+|+|.+|..+|+.|...|..|...++.+....       ...       ....|.++ +.++|.++.+...+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence            5799999999999999999999999998887654311       110       11236666 8899999998876654

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.91  E-value=0.034  Score=53.07  Aligned_cols=62  Identities=23%  Similarity=0.201  Sum_probs=42.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEEE-eCCCCCCC------------------------CCccccCCHHHhcccCCE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIGY-NSRTEKPN------------------------LNYKYYPNLIDLASNCQI  202 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~-~~~~~~~~------------------------~~~~~~~~l~el~~~aDv  202 (317)
                      .+|||+|+|.||+.+++.+... ++++.+ .++.++..                        .+.....++++++..+|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            4799999999999999988753 577654 44332100                        011122457788889999


Q ss_pred             EEEeccCC
Q 042102          203 LVVACSLT  210 (317)
Q Consensus       203 V~~~lp~~  210 (317)
                      |+.+.|..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99998754

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.91  E-value=0.013  Score=54.34  Aligned_cols=92  Identities=14%  Similarity=0.221  Sum_probs=69.1

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------------------CCccccC----------CH
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------------------LNYKYYP----------NL  193 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------------~~~~~~~----------~l  193 (317)
                      +-...+.++-++|+|.+|-..+...+..|+-|..++..+...                   -++....          -+
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~  238 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV  238 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence            345677889999999999999999999999998887543210                   0111111          14


Q ss_pred             HHhcccCCEEEEe--ccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          194 IDLASNCQILVVA--CSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       194 ~el~~~aDvV~~~--lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      .+.+++.|+|+..  +|..+.-+ ++.++..++||||+++||.+
T Consensus       239 a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         239 AEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEeh
Confidence            4678999999875  67777644 88999999999999999984

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.89  E-value=0.041  Score=51.58  Aligned_cols=107  Identities=20%  Similarity=0.216  Sum_probs=69.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------CCCcc-----------ccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------NLNYK-----------YYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------~~~~~-----------~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+|+|.|.||.-+|-+|...|.+|..+.|....      ..+..           ......+....+|+|++++...+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~   82 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD   82 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence            58999999999999999999999999888875311      10110           00111123467899999987543


Q ss_pred             hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEE
Q 042102          212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAG  258 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~  258 (317)
                       +...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++.
T Consensus        83 -~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~  126 (305)
T PRK05708         83 -AEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFAS  126 (305)
T ss_pred             -HHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEE
Confidence             33332 3455567788887777554 34556677777666666543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.89  E-value=0.0074  Score=50.06  Aligned_cols=105  Identities=18%  Similarity=0.239  Sum_probs=68.5

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCcc--------------ccCCHHHhcccCCEEEEeccCChh
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYK--------------YYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~--------------~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      |+|+|.|.||.-+|.+|+..|.+|..+.+.....    .+..              ......+....+|+|++++...+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~~   80 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQL   80 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGGH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccch
Confidence            6899999999999999999999999888765110    0100              011223467889999999875543


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEE
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAG  258 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~  258 (317)
                       ...+. ..-..+.+++.++-.--| +-.++.+.+.+...++.++.
T Consensus        81 -~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   81 -EQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             -HHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             -HHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence             33333 244556677777777665 44566666666555665443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.88  E-value=0.062  Score=50.38  Aligned_cols=89  Identities=15%  Similarity=0.142  Sum_probs=63.5

Q ss_pred             ccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCCCCCC-C---------CC--ccccCCHHHhcccCCEEEEeccCC
Q 042102          146 FTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSRTEKP-N---------LN--YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       146 l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~~~-~---------~~--~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      +.|++|+++|-|   ++.++.+..+..||++|.+..+..-. .         .+  .....++++.++.+|+|...- ..
T Consensus       148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~  226 (301)
T TIGR00670       148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ  226 (301)
T ss_pred             CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence            789999999995   99999999999999999887764321 1         01  123578999999999887631 11


Q ss_pred             -------hh-----hhccccHHHHhccCCCcEEEEeC
Q 042102          211 -------EE-----TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       211 -------~~-----t~~li~~~~l~~mk~gavlVN~~  235 (317)
                             ++     ...-++++.++.+|++++|.-+.
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl  263 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL  263 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence                   01     02235677777788887777654

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PLN02527 aspartate carbamoyltransferase

Probab=95.85  E-value=0.065  Score=50.35  Aligned_cols=90  Identities=21%  Similarity=0.336  Sum_probs=61.9

Q ss_pred             ccCCeEEEEecC---hhHHHHHHHHhhC-CCEEEEeCCCCCCC------------CCccccCCHHHhcccCCEEEEeccC
Q 042102          146 FTGKSVGILGMG---RIGTAIAKRAEAF-DCIIGYNSRTEKPN------------LNYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       146 l~g~~vgIiG~G---~iG~~~a~~l~~~-G~~V~~~~~~~~~~------------~~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      +.|.||+++|-+   ++.++.+..+..+ |++|.+..+..-..            .......++++.++.||+|....-.
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q  228 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ  228 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence            789999999976   6889999988887 99998777643211            1122357899999999999884311


Q ss_pred             Ch------h-h-----hccccHHHHhccCCCcEEEEeC
Q 042102          210 TE------E-T-----QHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       210 ~~------~-t-----~~li~~~~l~~mk~gavlVN~~  235 (317)
                      .+      . -     ...++++.++.+|++++|..+.
T Consensus       229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl  266 (306)
T PLN02527        229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL  266 (306)
T ss_pred             hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence            00      0 1     2345667777777777777654

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.83  E-value=0.03  Score=52.72  Aligned_cols=106  Identities=20%  Similarity=0.215  Sum_probs=64.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------------C-cc-c-cCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------------N-YK-Y-YPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~-~~-~-~~~l~el~~~aDvV~~~lp~~  210 (317)
                      .+|+|||.|.+|..+|-.+...|.  ++..+|...+...             . .. . ..+.++ ++.||+|+++.-..
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence            589999999999999998876665  6888887654211             0 01 1 234554 89999999964321


Q ss_pred             h---hhhc-cc--c-------HHHHhccCCCcEEEEeCCCcccCHH--HHHHH--HHhCCceEE
Q 042102          211 E---ETQH-IV--N-------RQVINALGPKGVLINIGRGLLVDEH--ELVSA--LLQGRLGGA  257 (317)
Q Consensus       211 ~---~t~~-li--~-------~~~l~~mk~gavlVN~~rg~~vd~~--aL~~a--l~~g~i~ga  257 (317)
                      +   .++- ++  |       .+.+....|.+++++++  ..+|.-  .+.+.  +...++.|.
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEec
Confidence            1   1221 11  1       12333457889999997  444432  22332  444565555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.77  E-value=0.015  Score=45.69  Aligned_cols=75  Identities=8%  Similarity=0.051  Sum_probs=52.6

Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCC--------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcE
Q 042102          159 IGTAIAKRAEAFDCIIGYNSRTEKPN--------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV  230 (317)
Q Consensus       159 iG~~~a~~l~~~G~~V~~~~~~~~~~--------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gav  230 (317)
                      -+..+++.|+..|++|.+||+.....        .+.....++++.++.+|+|+++.+... -..+--++....|+++.+
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~~~~~~~~~~~~~~   96 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELDWEEIAKLMRKPPV   96 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCGHHHHHHHSCSSEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccCHHHHHHhcCCCCE
Confidence            46789999999999999999876432        123345689999999999999988543 333322445567888999


Q ss_pred             EEEe
Q 042102          231 LINI  234 (317)
Q Consensus       231 lVN~  234 (317)
                      +|++
T Consensus        97 iiD~  100 (106)
T PF03720_consen   97 IIDG  100 (106)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.76  E-value=0.1  Score=49.60  Aligned_cols=90  Identities=10%  Similarity=0.135  Sum_probs=62.8

Q ss_pred             ccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCC--------------CC--ccccCCHHHhcccCCEEEEec
Q 042102          146 FTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPN--------------LN--YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       146 l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~el~~~aDvV~~~l  207 (317)
                      +.|+||++||-+  ++.++.+..+..||++|.+..+..-..              .+  .....+++++++++|+|..-+
T Consensus       153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  232 (331)
T PRK02102        153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV  232 (331)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            789999999997  788999999999999998877543211              11  123478999999999998743


Q ss_pred             cC---C----hh-----hhccccHHHHh-ccCCCcEEEEeC
Q 042102          208 SL---T----EE-----TQHIVNRQVIN-ALGPKGVLINIG  235 (317)
Q Consensus       208 p~---~----~~-----t~~li~~~~l~-~mk~gavlVN~~  235 (317)
                      =.   .    ++     ....++++.++ .+|++++|.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence            10   0    01     12235677777 467887777664

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.74  E-value=0.02  Score=56.85  Aligned_cols=91  Identities=15%  Similarity=0.200  Sum_probs=60.0

Q ss_pred             ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------C-ccc--cCCHHHhcccCCEEEEeccCC
Q 042102          140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------N-YKY--YPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~-~~~--~~~l~el~~~aDvV~~~lp~~  210 (317)
                      +|+.-+|+|++|.|||.|.++..=++.|..+|++|.++++...+..      + ...  ..=..+.++.+++|+.++...
T Consensus         4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~   83 (457)
T PRK10637          4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD   83 (457)
T ss_pred             eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence            4556789999999999999999988999999999999987543221      0 000  001234567888777775543


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      +     +|+.....++...+++|++
T Consensus        84 ~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         84 A-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             H-----HhHHHHHHHHHcCcEEEEC
Confidence            3     3444444455555666653

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.74  E-value=0.025  Score=52.86  Aligned_cols=57  Identities=12%  Similarity=0.178  Sum_probs=41.1

Q ss_pred             EEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------Cc----cccCCHHHhcccCCEEEEecc
Q 042102          151 VGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------NY----KYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~el~~~aDvV~~~lp  208 (317)
                      |+|||.|.+|..+|..+...|. +|..+|.++....             ..    ....+. +.++.||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999886665 9999998654210             00    012344 45899999999763

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.72  E-value=0.021  Score=55.31  Aligned_cols=92  Identities=13%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhC-CCEEEEeCCCCCCCCC----c--------cccCCHH-HhcccCCEEEEeccCC
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAF-DCIIGYNSRTEKPNLN----Y--------KYYPNLI-DLASNCQILVVACSLT  210 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~----~--------~~~~~l~-el~~~aDvV~~~lp~~  210 (317)
                      -..++|+|+|. |.+|+.+.+.|..- +++|..+.+.......    .        ....+++ +.++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            35569999998 89999999999877 6687665443221100    0        0011222 2258899999999953


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                            ...+....|+.|..+|+.|..-..+.+
T Consensus       116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~  142 (381)
T PLN02968        116 ------TTQEIIKALPKDLKIVDLSADFRLRDI  142 (381)
T ss_pred             ------HHHHHHHHHhCCCEEEEcCchhccCCc
Confidence                  234455556678999999865444443

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.69  E-value=0.023  Score=56.00  Aligned_cols=121  Identities=18%  Similarity=0.254  Sum_probs=74.9

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---------CCccc--cCCHHHhcccCCEEEEe--ccCChh
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---------LNYKY--YPNLIDLASNCQILVVA--CSLTEE  212 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~--~~~l~el~~~aDvV~~~--lp~~~~  212 (317)
                      +.+++|.|+|+|.-|.++++.|+..|++|.++|.++...         .+...  -....+.+..+|+|+..  +|.+..
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p   84 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP   84 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence            459999999999999999999999999999999665541         11111  11122678889998886  332211


Q ss_pred             --------hhccccHH-HHhcc-CCCcEEEEe-CCCcccCHHHHHHHHH--------hCCceEEEeeCCCCCC
Q 042102          213 --------TQHIVNRQ-VINAL-GPKGVLINI-GRGLLVDEHELVSALL--------QGRLGGAGLDVFEHEP  266 (317)
Q Consensus       213 --------t~~li~~~-~l~~m-k~gavlVN~-~rg~~vd~~aL~~al~--------~g~i~ga~lDV~~~EP  266 (317)
                              -..+++.= .|-.. ++..++-=+ +-|..--..-+...|+        .|+|...++|+.++++
T Consensus        85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~  157 (448)
T COG0771          85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE  157 (448)
T ss_pred             HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence                    11122222 22222 233454444 4577655555544444        4677888899988744

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.69  E-value=0.044  Score=48.66  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=32.6

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|.+++|+|||+|.+|..+++.|...|. ++..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46889999999999999999999999998 57777754

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.66  E-value=0.027  Score=53.77  Aligned_cols=86  Identities=16%  Similarity=0.215  Sum_probs=53.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhC-CCEEE-EeCCCCCCC-CC-----cc-----ccCCHHH-hcccCCEEEEeccCChhh
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAF-DCIIG-YNSRTEKPN-LN-----YK-----YYPNLID-LASNCQILVVACSLTEET  213 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-~~-----~~-----~~~~l~e-l~~~aDvV~~~lp~~~~t  213 (317)
                      ++|+|+|. |.+|+.+++.+... ++++. +.++..... ..     ..     ...++++ ...++|+|++|+|.... 
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence            58999997 99999999999876 56764 455432211 00     00     1222222 45789999999996533 


Q ss_pred             hccccHHHHh-ccCCCcEEEEeCCCccc
Q 042102          214 QHIVNRQVIN-ALGPKGVLINIGRGLLV  240 (317)
Q Consensus       214 ~~li~~~~l~-~mk~gavlVN~~rg~~v  240 (317)
                           .+... ..+.|..+||.|-.=-.
T Consensus        82 -----~~~v~~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         82 -----MDLAPQLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             -----HHHHHHHHhCCCEEEECCcccCC
Confidence                 22222 23578999999844333

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.63  E-value=0.18  Score=49.46  Aligned_cols=91  Identities=11%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             cccCCeEEEEecC---hhHHHHHHHHhhC-CCEEEEeCCCCCC-CC---------C--ccccCCHHHhcccCCEEEEecc
Q 042102          145 KFTGKSVGILGMG---RIGTAIAKRAEAF-DCIIGYNSRTEKP-NL---------N--YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       145 ~l~g~~vgIiG~G---~iG~~~a~~l~~~-G~~V~~~~~~~~~-~~---------~--~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .+.|+||++||-+   ++.++.+..+..+ |++|.+..+..-. ..         +  +....++++.++.+|+|....-
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            4789999999994   8899999988876 9999887764321 10         1  2235789999999999987442


Q ss_pred             CCh-----h-----hhccccHHHHhc-cCCCcEEEEeC
Q 042102          209 LTE-----E-----TQHIVNRQVINA-LGPKGVLINIG  235 (317)
Q Consensus       209 ~~~-----~-----t~~li~~~~l~~-mk~gavlVN~~  235 (317)
                      ..+     .     -...++++.++. .|++++|.-+.
T Consensus       318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL  355 (429)
T PRK11891        318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL  355 (429)
T ss_pred             hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence            111     0     113457788887 78888887664

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=95.62  E-value=0.11  Score=49.43  Aligned_cols=90  Identities=12%  Similarity=0.152  Sum_probs=63.0

Q ss_pred             ccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCC--------------CC--ccccCCHHHhcccCCEEEEec
Q 042102          146 FTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPN--------------LN--YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       146 l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~el~~~aDvV~~~l  207 (317)
                      +.|++|++||=+  ++.++.+..+..+|++|.+..+..-..              .+  .....++++.++++|+|..-.
T Consensus       153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  232 (332)
T PRK04284        153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV  232 (332)
T ss_pred             cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence            789999999975  888999999999999998877642111              11  224578999999999998742


Q ss_pred             c----C----Chh-----hhccccHHHHhccC-CCcEEEEeC
Q 042102          208 S----L----TEE-----TQHIVNRQVINALG-PKGVLINIG  235 (317)
Q Consensus       208 p----~----~~~-----t~~li~~~~l~~mk-~gavlVN~~  235 (317)
                      =    .    .++     -...++++.++.+| ++++|.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence            1    0    000     12345777788775 477777764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.61  E-value=0.02  Score=53.86  Aligned_cols=61  Identities=15%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCCCC-------cc--------ccCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPNLN-------YK--------YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~-------~~--------~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|||.|.+|..+|..|...|  .+|..+|+......+       ..        ...+. +.++.||+|+++.+..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~   78 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN   78 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence            47999999999999999998888  479999986542211       00        11233 5689999999998863

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.53  E-value=0.03  Score=55.09  Aligned_cols=107  Identities=16%  Similarity=0.204  Sum_probs=66.4

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------Ccc--ccCCHHHhcccCCEEEEeccCChh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------NYK--YYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~--~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      .+.++++.|+|.|.+|.++|+.|...|++|.++|+......          +..  .....++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            36789999999999999999999999999999998642210          111  112233556789998887543332


Q ss_pred             hh--------cc--cc-HHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHh
Q 042102          213 TQ--------HI--VN-RQVINALGPKGVL-INIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       213 t~--------~l--i~-~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~  251 (317)
                      ..        ++  +. .+.+....+..++ |--+.|..--.+-|.+.|+.
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            22        11  11 1112222223333 44457887777777777765

>PRK08223 hypothetical protein; Validated

Probab=95.52  E-value=0.049  Score=50.61  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=31.8

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ..|++.+|.|||+|.+|..+++.|...|. ++..+|.
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~   59 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF   59 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence            46899999999999999999999999998 6766664

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.51  E-value=0.032  Score=54.80  Aligned_cols=64  Identities=17%  Similarity=0.233  Sum_probs=47.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcc-------ccCCHHHh-cccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYK-------YYPNLIDL-ASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~-------~~~~l~el-~~~aDvV~~~lp~~~~  212 (317)
                      +++.|+|+|.+|+.+++.|...|.+|.++++++...      .+..       ....++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            479999999999999999999999999998765421      1111       11235555 7899999999886554

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.51  E-value=0.084  Score=48.56  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=58.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHhh-CCCEEE-EeCCCCCCC-------------CCccccCCHHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILG-MGRIGTAIAKRAEA-FDCIIG-YNSRTEKPN-------------LNYKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      .+|+|+| +|.||+.+++.+.. -++++. ++++.....             .+.....+++++...+|+|+.+.|... 
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~-   80 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG-   80 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH-
Confidence            4899999 69999999999875 578764 566432111             122334678888667999998875322 


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCc
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRL  254 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i  254 (317)
                      ..    +-....++.|.-+|-...|--. +.+.|.++.++..+
T Consensus        81 ~~----~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~  119 (266)
T TIGR00036        81 VL----NHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGI  119 (266)
T ss_pred             HH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCc
Confidence            11    2223334555444433334322 23345555555333

>PLN02342 ornithine carbamoyltransferase

Probab=95.50  E-value=0.24  Score=47.41  Aligned_cols=91  Identities=12%  Similarity=0.130  Sum_probs=64.0

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC----------C---CccccCCHHHhcccCCEEEEec---
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN----------L---NYKYYPNLIDLASNCQILVVAC---  207 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~---~~~~~~~l~el~~~aDvV~~~l---  207 (317)
                      .+.|+||+++|= .++-++.+..+..||++|.+..+..-..          .   .+....++++.++.+|+|..-.   
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s  270 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS  270 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence            378999999987 3577888888899999998877643211          0   1234578999999999998753   


Q ss_pred             -cCChh--------hhccccHHHHhccCCCcEEEEeC
Q 042102          208 -SLTEE--------TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       208 -p~~~~--------t~~li~~~~l~~mk~gavlVN~~  235 (317)
                       -..+.        ....++++.++.+|++++|.-+.
T Consensus       271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence             11111        12456788888888888877764

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=95.47  E-value=0.15  Score=48.52  Aligned_cols=91  Identities=9%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCC-CC-------------CC--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEK-PN-------------LN--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~-~~-------------~~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|++|++||-+  ++.++++..+..||+++.+..+..- +.             .+  .....++++.++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4789999999976  6899999999999999988776432 11             01  22357899999999999874


Q ss_pred             ccCC----h---------hhhccccHHHHhcc-CCCcEEEEeC
Q 042102          207 CSLT----E---------ETQHIVNRQVINAL-GPKGVLINIG  235 (317)
Q Consensus       207 lp~~----~---------~t~~li~~~~l~~m-k~gavlVN~~  235 (317)
                      .=..    .         -....++++.++.. |++++|.-+.
T Consensus       233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL  275 (336)
T PRK03515        233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL  275 (336)
T ss_pred             CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence            2100    0         01223566666663 6777776664

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.44  E-value=0.052  Score=52.25  Aligned_cols=84  Identities=14%  Similarity=0.222  Sum_probs=61.3

Q ss_pred             ccCCeEEEEecC----------hhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCC
Q 042102          146 FTGKSVGILGMG----------RIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       146 l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      |.||||||+|+-          .-...++++|+..|++|.+||+.....     .+.....+++++++.||+++++..+.
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~  387 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD  387 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence            789999999984          456788999999999999999865432     12345788999999999999987654


Q ss_pred             hhhhccccHHHHhccCCCcEEEE
Q 042102          211 EETQHIVNRQVINALGPKGVLIN  233 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN  233 (317)
                      + -+. ++-+.+ .|| +.++++
T Consensus       388 e-f~~-~d~~~~-~m~-~~~v~D  406 (414)
T COG1004         388 E-FRD-LDFEKL-LMK-TPVVID  406 (414)
T ss_pred             H-Hhc-cChhhh-hcc-CCEEEe
Confidence            3 222 333333 565 566665

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.42  E-value=0.07  Score=50.89  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=63.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhC----------CCEEE-EeCCCCC-----CC-----------CC-cc------ccCCHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF----------DCIIG-YNSRTEK-----PN-----------LN-YK------YYPNLI  194 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~-~~~~~~~-----~~-----------~~-~~------~~~~l~  194 (317)
                      .+|||+|+|.||+.+++.+...          +++|. +.|++..     ..           .+ ..      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4799999999999999998644          56654 4454211     00           00 00      123778


Q ss_pred             Hhc--ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102          195 DLA--SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG  255 (317)
Q Consensus       195 el~--~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~  255 (317)
                      +++  .+.|+|+.++|....+...--.-....++.|.-+|-..-+.+. ..+.|.++.++....
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            887  4689999999965442211112224556667666554333332 456777777766554

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.34  E-value=0.021  Score=45.09  Aligned_cols=81  Identities=21%  Similarity=0.189  Sum_probs=52.5

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc----cC---CHHHh-cccCCEEEEeccCChhhhccc
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY----YP---NLIDL-ASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~---~l~el-~~~aDvV~~~lp~~~~t~~li  217 (317)
                      +-|+|+|.+|+.+++.|+..+.+|.+.+..+...     .+...    ..   .++++ +.++|.++++.+....+.  .
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~--~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENL--L   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH--H
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHH--H
Confidence            5699999999999999999777898888765321     12111    12   23333 788999999988654433  3


Q ss_pred             cHHHHhccCCCcEEEE
Q 042102          218 NRQVINALGPKGVLIN  233 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN  233 (317)
                      -...++.+-+...++-
T Consensus        79 ~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   79 IALLARELNPDIRIIA   94 (116)
T ss_dssp             HHHHHHHHTTTSEEEE
T ss_pred             HHHHHHHHCCCCeEEE
Confidence            3445565556555543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.33  E-value=0.037  Score=54.71  Aligned_cols=108  Identities=17%  Similarity=0.123  Sum_probs=65.6

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEe--ccCC-h----h
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVA--CSLT-E----E  212 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~--lp~~-~----~  212 (317)
                      ++.|++|.|+|+|..|.++|+.|+..|++|.++|......     .+......-.+-+..+|+|+..  +|.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            4678999999999999999999999999999999653211     1111111011235678987753  2221 1    1


Q ss_pred             hh---c----cccH-HHHhc-c-----CCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          213 TQ---H----IVNR-QVINA-L-----GPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       213 t~---~----li~~-~~l~~-m-----k~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      ..   .    ++++ +.+.. +     +...+-|--+.|..--.+-|...|+..
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            11   1    1332 22222 2     223344555689888877788888753

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.29  E-value=0.036  Score=55.44  Aligned_cols=107  Identities=12%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc--cCCHHHhcccCCEEEEeccCChhhh---
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY--YPNLIDLASNCQILVVACSLTEETQ---  214 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~--~~~l~el~~~aDvV~~~lp~~~~t~---  214 (317)
                      .+.|++|.|+|+|.+|.+.++.|+..|++|.++|......     .+...  .....+.++.+|+|+.+-...+...   
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~   88 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLA   88 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHH
Confidence            3578999999999999999999999999999999653211     12211  1123455678998877643222111   


Q ss_pred             -------ccccHHHHh--ccC------CCcE-EEEeCCCcccCHHHHHHHHHh
Q 042102          215 -------HIVNRQVIN--ALG------PKGV-LINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       215 -------~li~~~~l~--~mk------~gav-lVN~~rg~~vd~~aL~~al~~  251 (317)
                             .++++-.+.  .++      +..+ =|--+-|..--..-+.+.|+.
T Consensus        89 ~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         89 AAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             HHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence                   123332221  111      2223 344456887777777777765

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.28  E-value=0.043  Score=54.94  Aligned_cols=110  Identities=17%  Similarity=0.163  Sum_probs=66.0

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------Cccc--cCCHHHhcccCCEEEEe--ccCC--
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYKY--YPNLIDLASNCQILVVA--CSLT--  210 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~--~~~l~el~~~aDvV~~~--lp~~--  210 (317)
                      +.+++|.|+|+|..|.++|+.|+..|.+|.++|.......         +...  .....+.+..+|+|+..  +|.+  
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~   84 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA   84 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence            5688999999999999999999999999999996542210         1111  11123456689988886  4432  


Q ss_pred             ---hh-------hhccccH-HHHh-cc--------CCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          211 ---EE-------TQHIVNR-QVIN-AL--------GPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       211 ---~~-------t~~li~~-~~l~-~m--------k~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                         +.       ...++.+ +.+. .+        ++..+-|--+-|..--..-|.+.|++....
T Consensus        85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~  149 (498)
T PRK02006         85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK  149 (498)
T ss_pred             ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence               21       1122322 2221 12        112333444567777777777777654443

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.24  E-value=0.4  Score=46.04  Aligned_cols=62  Identities=8%  Similarity=0.045  Sum_probs=45.8

Q ss_pred             cccCCeEEEEecC--------hhHHHHHHHHhhCCCEEEEeCCCCCC-C-------------CC--ccccCCHHHhcccC
Q 042102          145 KFTGKSVGILGMG--------RIGTAIAKRAEAFDCIIGYNSRTEKP-N-------------LN--YKYYPNLIDLASNC  200 (317)
Q Consensus       145 ~l~g~~vgIiG~G--------~iG~~~a~~l~~~G~~V~~~~~~~~~-~-------------~~--~~~~~~l~el~~~a  200 (317)
                      .+.|+||+|+|.|        ++.++++..+..||++|.+..+..-. .             .+  .....++++.++.+
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999853        44578888899999999888765311 1             11  12357899999999


Q ss_pred             CEEEEe
Q 042102          201 QILVVA  206 (317)
Q Consensus       201 DvV~~~  206 (317)
                      |+|..-
T Consensus       247 Dvvyt~  252 (357)
T TIGR03316       247 DIVYPK  252 (357)
T ss_pred             CEEEEC
Confidence            999775

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.23  E-value=0.067  Score=49.98  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=26.2

Q ss_pred             eEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      +|.|+|.|.+|..+|+.|...|. ++..+|.
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~   31 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDS   31 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            58999999999999999999998 6766663

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.23  E-value=0.73  Score=41.28  Aligned_cols=42  Identities=17%  Similarity=0.069  Sum_probs=36.4

Q ss_pred             ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ++..-.++|++|.|||.|.++..=++.|..+|++|.++++..
T Consensus        17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i   58 (223)
T PRK05562         17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF   58 (223)
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            345567889999999999999998899999999999998764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.22  E-value=0.091  Score=52.33  Aligned_cols=97  Identities=10%  Similarity=0.189  Sum_probs=68.2

Q ss_pred             cccCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCC-C--------------------------Cc
Q 042102          145 KFTGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPN-L--------------------------NY  187 (317)
Q Consensus       145 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~--------------------------~~  187 (317)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+..... .                          ..
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            588999999998          5678899999999999999999864321 0                          01


Q ss_pred             cccCCHHHhcccCCEEEEeccCChhhhccccHH-HHhccCCCcEEEEeCCCcccCHHHH
Q 042102          188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQ-VINALGPKGVLINIGRGLLVDEHEL  245 (317)
Q Consensus       188 ~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~-~l~~mk~gavlVN~~rg~~vd~~aL  245 (317)
                      ....++.+.++.||+|+++....+ .+. ++-+ ..+.|++..+++|. |+ +.|.+.+
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~  455 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKL  455 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            123456789999999999987654 233 3433 35567766688884 54 3465444

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.21  E-value=0.09  Score=48.81  Aligned_cols=105  Identities=24%  Similarity=0.202  Sum_probs=68.9

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC----------ccccCCHHHh--cccCCEEEEeccCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN----------YKYYPNLIDL--ASNCQILVVACSLT  210 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~----------~~~~~~l~el--~~~aDvV~~~lp~~  210 (317)
                      ....|+++.|+|.|..+++++..|+..|+ +|.+++|+..+...          ......+.++  ..++|+|+.++|..
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            34678999999999999999999999996 79999997654210          0011122222  22699999999964


Q ss_pred             hhhh---ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          211 EETQ---HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       211 ~~t~---~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      -.-.   .+++   .+.++++.++.++--.+. .+.-|..|=+.|
T Consensus       202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G  242 (283)
T COG0169         202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG  242 (283)
T ss_pred             CCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence            3322   1333   456788889888865554 443444444434

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.21  E-value=0.014  Score=48.49  Aligned_cols=91  Identities=18%  Similarity=0.258  Sum_probs=57.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCCC---------------CccccCCHHHhcccCCEEEEeccC-
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPNL---------------NYKYYPNLIDLASNCQILVVACSL-  209 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~~~~~~~l~el~~~aDvV~~~lp~-  209 (317)
                      ++|+|||. |.+|+.+|-.|...+.  ++..+|.......               ......+..+.+++||+|+++.-. 
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            48999999 9999999999976554  7888888743211               011123567889999999998633 


Q ss_pred             -Ch-hhh-ccc--c-------HHHHhccCCCcEEEEeCCCcccC
Q 042102          210 -TE-ETQ-HIV--N-------RQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       210 -~~-~t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                       .+ +++ .++  |       .+.+....|.++++.++  .++|
T Consensus        81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd  122 (141)
T PF00056_consen   81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVD  122 (141)
T ss_dssp             SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHH
T ss_pred             ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHH
Confidence             22 111 111  1       12233445788888874  4455

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.19  E-value=0.038  Score=59.74  Aligned_cols=89  Identities=9%  Similarity=0.138  Sum_probs=63.3

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC-----------------------------C---CCCC--c---
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE-----------------------------K---PNLN--Y---  187 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~-----------------------------~---~~~~--~---  187 (317)
                      .+.-.++.|+|.|++|+..++.+.++|++.  .++..                             .   ...+  +   
T Consensus       200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~~--v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        200 GICPLVFVFTGSGNVSQGAQEIFKLLPHTF--VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCCeEEEEeCCchHHHHHHHHHhhcCCCc--cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            455689999999999999999999886541  11100                             0   0000  0   


Q ss_pred             -------cccCC-HHHhcccCCEEEEeccCChhhhccccHH-HHhccCCCc----EEEEeC
Q 042102          188 -------KYYPN-LIDLASNCQILVVACSLTEETQHIVNRQ-VINALGPKG----VLINIG  235 (317)
Q Consensus       188 -------~~~~~-l~el~~~aDvV~~~lp~~~~t~~li~~~-~l~~mk~ga----vlVN~~  235 (317)
                             .+... +++.+..+|+++.++-..+..-.++.++ ..+.||+|.    +++|++
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                   00111 3568899999999998888888899888 777899998    888875

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.18  E-value=0.048  Score=55.11  Aligned_cols=38  Identities=26%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .+.++++.|+|.|.+|++++..|...|++|.+++|+.+
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e  413 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE  413 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            47789999999999999999999999999999988643

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.08  E-value=0.048  Score=55.70  Aligned_cols=65  Identities=18%  Similarity=0.339  Sum_probs=48.6

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Cc---cccCC---HHHhcccCCEEEEecc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NY---KYYPN---LIDLASNCQILVVACS  208 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~---~~~~~---l~el~~~aDvV~~~lp  208 (317)
                      .....++|||||.|..|+.+++.++.+|++|..++..+....    +.   ..+.+   +.++.+++|+|.....
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            347889999999999999999999999999999987654221    00   01233   5566788999876543

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.07  E-value=0.049  Score=54.15  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------Ccc--ccCCHHHhcccCCEEEEec--cC-Chh
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------NYK--YYPNLIDLASNCQILVVAC--SL-TEE  212 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~~--~~~~l~el~~~aDvV~~~l--p~-~~~  212 (317)
                      +.|++|+|+|+|.-|.++++.|...|++|.++|.......        +..  ......+.+.++|+|+..-  |. ++.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            5689999999999999999999999999999985432111        000  0111234567899887753  32 221


Q ss_pred             h-------hccccHHHH--hc-cC-----CCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          213 T-------QHIVNRQVI--NA-LG-----PKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       213 t-------~~li~~~~l--~~-mk-----~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      .       ..++++-.|  .. ++     ...+-|--+.|..--..-+.+.|+..
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            1       124444433  32 32     12334544568877777777777643

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.04  E-value=0.097  Score=44.97  Aligned_cols=31  Identities=26%  Similarity=0.292  Sum_probs=27.1

Q ss_pred             eEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      +|+|+|+|.+|..+++.|...|. ++..+|..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            58999999999999999999998 58777754

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.02  E-value=0.042  Score=52.39  Aligned_cols=56  Identities=21%  Similarity=0.412  Sum_probs=42.5

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Cc---cccCC---HHHhcccCCEEEE
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NY---KYYPN---LIDLASNCQILVV  205 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~---~~~~~---l~el~~~aDvV~~  205 (317)
                      ||||||.|..|+.+++.++.+|++|++++.++....    +.   ....+   +.++++.||+|..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            599999999999999999999999999987654321    10   01233   6677888998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.99  E-value=0.24  Score=44.11  Aligned_cols=88  Identities=22%  Similarity=0.290  Sum_probs=55.6

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc----c-cCCHHHh-----cccCCEEEEeccCC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK----Y-YPNLIDL-----ASNCQILVVACSLT  210 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~----~-~~~l~el-----~~~aDvV~~~lp~~  210 (317)
                      ..|.+|.|.|.|.+|+.+++.++..|.+|.+.+++.....     +..    . ..+..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            3578999999999999999999999999988877643210     000    0 0111111     23467777665532


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      .     .-...++.|+++..+++++...
T Consensus       213 ~-----~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         213 E-----TLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             H-----HHHHHHHhcccCCEEEEEccCC
Confidence            1     1234566677777777776544

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PLN02602 lactate dehydrogenase

Probab=94.97  E-value=0.11  Score=49.81  Aligned_cols=86  Identities=16%  Similarity=0.318  Sum_probs=55.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC--------------cccc--CCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN--------------YKYY--PNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~--~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|...+...+              ....  .+. +.++.||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            699999999999999999987665  68888876543210              0111  233 4489999999984432


Q ss_pred             h---hhh-ccc--c-------HHHHhccCCCcEEEEeC
Q 042102          211 E---ETQ-HIV--N-------RQVINALGPKGVLINIG  235 (317)
Q Consensus       211 ~---~t~-~li--~-------~~~l~~mk~gavlVN~~  235 (317)
                      .   .++ .++  |       .+.+....|.+++|+++
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            1   122 112  1       12234456889999987

>PRK11579 putative oxidoreductase; Provisional

Probab=94.96  E-value=0.042  Score=52.25  Aligned_cols=63  Identities=14%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             CeEEEEecChhHHH-HHHHHhh-CCCEEE-EeCCCCCCC----CCccccCCHHHhcc--cCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTA-IAKRAEA-FDCIIG-YNSRTEKPN----LNYKYYPNLIDLAS--NCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~-~G~~V~-~~~~~~~~~----~~~~~~~~l~el~~--~aDvV~~~lp~~~  211 (317)
                      .+|||||+|.||+. .+..++. -++++. ++|++....    .....+.+++++++  +.|+|++++|...
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~   76 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT   76 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            48999999999985 4665554 367765 577664321    12234678999996  5799999999754

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=94.90  E-value=0.026  Score=47.94  Aligned_cols=62  Identities=13%  Similarity=0.103  Sum_probs=47.1

Q ss_pred             EEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC---Ccc-------ccCCHHHhcccCCEEEEeccCChh
Q 042102          151 VGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL---NYK-------YYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       151 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~-------~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      |.|+|. |.+|+.+++.|...|.+|.+..|++.+..   +..       ...++.+.++.+|.|+.+++....
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence            678995 99999999999999999999888765421   111       123456788999999999875443

...

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.87  E-value=0.4  Score=45.09  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=81.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------C------CC----ccccCCHHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------N------LN----YKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------~------~~----~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ++|.|+|.|.||.-.+.+|...|..|..+.|.+..      .      .+    ........+.+..+|+|++++.... 
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q-   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ-   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc-
Confidence            58999999999999999999999778777766530      0      11    0112233456678999999987543 


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCc--ccCCCCceEEcccCCCcc
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE--ELIGLENVVLLPHVASAT  288 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~--~L~~~pnvi~tPH~a~~t  288 (317)
                      +...+ +......++.++++-+--| +=.++.+.......++- .++..+...-..+.  .......+.+.+.-++.+
T Consensus        80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            33332 4556667888777655333 33444566666555454 23333322111111  344456777777666554

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=94.87  E-value=0.11  Score=47.31  Aligned_cols=86  Identities=15%  Similarity=0.090  Sum_probs=67.6

Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCC----------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102          160 GTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG  229 (317)
Q Consensus       160 G~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  229 (317)
                      |..||-.+...|.+|...+++.+-.          .+....++=.+..+.+++.++-.|....|-++. ++.++.++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            6788888888999999998876532          233344556678999999999999998888865 78899999999


Q ss_pred             EEEEeCCCcccCHHHHHHHH
Q 042102          230 VLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       230 vlVN~~rg~~vd~~aL~~al  249 (317)
                      ++-|+..-+.+   .|+..|
T Consensus       112 VicnTCT~sp~---vLy~~L  128 (340)
T COG4007         112 VICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             EecccccCchh---HHHHHh
Confidence            99999886654   455555

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=94.86  E-value=0.24  Score=40.87  Aligned_cols=93  Identities=14%  Similarity=0.145  Sum_probs=64.9

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCC---------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEE
Q 042102          162 AIAKRAEAFDCIIGYNSRTEKPN---------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI  232 (317)
Q Consensus       162 ~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV  232 (317)
                      ..+++|...|++|++=.-.....         .++....+.++++++||+|+-.-|.+        .+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence            46778888899998754332211         23334456679999999988876643        56778899999999


Q ss_pred             EeCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 042102          233 NIGRGLLVDEHELVSALLQGRLGGAGLDVFEH  264 (317)
Q Consensus       233 N~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~  264 (317)
                      -...-.  ....+++.|.+.++...++|....
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            876654  588999999999999887776544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=94.86  E-value=0.061  Score=45.00  Aligned_cols=83  Identities=11%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc---cccCCHHHhcccCCEEEEeccCChhhhcccc---H
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY---KYYPNLIDLASNCQILVVACSLTEETQHIVN---R  219 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDvV~~~lp~~~~t~~li~---~  219 (317)
                      ..|++|++||+=   +.++++++..+.++.++|+++......   ......++++++||+|++.-.  .    ++|   .
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs--T----lvN~Ti~   79 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS--T----LVNGTID   79 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH--H----CCTTTHH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee--e----eecCCHH
Confidence            578999999961   237888888889999999887432111   133457789999999988722  1    222   4


Q ss_pred             HHHhccCCCcEEEEeCCC
Q 042102          220 QVINALGPKGVLINIGRG  237 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg  237 (317)
                      +.++..+++..++=+|-.
T Consensus        80 ~iL~~~~~~~~vil~GpS   97 (147)
T PF04016_consen   80 DILELARNAREVILYGPS   97 (147)
T ss_dssp             HHHHHTTTSSEEEEESCC
T ss_pred             HHHHhCccCCeEEEEecC
Confidence            566667767776666543

; PDB: 3L5O_B 3NPG_A.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.86  E-value=0.069  Score=50.91  Aligned_cols=37  Identities=30%  Similarity=0.313  Sum_probs=33.2

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46889999999999999999999999998 78887764

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=94.82  E-value=0.024  Score=54.68  Aligned_cols=60  Identities=20%  Similarity=0.313  Sum_probs=42.2

Q ss_pred             EEEEecChhHHHHHHHHhhCC-C-EEEEeCCCCCCC---------CCcc-------ccCCHHHhcccCCEEEEeccCC
Q 042102          151 VGILGMGRIGTAIAKRAEAFD-C-IIGYNSRTEKPN---------LNYK-------YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G-~-~V~~~~~~~~~~---------~~~~-------~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      |+|+|.|.+|+.+++.|...+ . +|.+.+|+.++.         ....       ...++.++++++|+|+.|+|..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            789999999999999998766 4 888888876541         0111       1123778999999999998744

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=94.76  E-value=0.56  Score=44.60  Aligned_cols=92  Identities=10%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCC-CC-------------CC--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEK-PN-------------LN--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~-~~-------------~~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|++|++||=+  ++.++.+..+..+|++|.+..+..- +.             .+  .....++++.++.+|+|..-
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999976  7899999999999999988776431 10             01  22347899999999999775


Q ss_pred             c----cCC----hh-----hhccccHHHHhcc-CCCcEEEEeCC
Q 042102          207 C----SLT----EE-----TQHIVNRQVINAL-GPKGVLINIGR  236 (317)
Q Consensus       207 l----p~~----~~-----t~~li~~~~l~~m-k~gavlVN~~r  236 (317)
                      .    ...    ++     -...++++.++.. |++++|.-+.-
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP  276 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLP  276 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCC
Confidence            3    100    01     1234577888875 78888887743

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=94.76  E-value=0.25  Score=46.14  Aligned_cols=61  Identities=11%  Similarity=0.121  Sum_probs=47.5

Q ss_pred             ccCCeEEEEe---cChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CC-c-cccCCHHHhcccCCEEEEe
Q 042102          146 FTGKSVGILG---MGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LN-Y-KYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       146 l~g~~vgIiG---~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~-~-~~~~~l~el~~~aDvV~~~  206 (317)
                      +.|++|+|+|   .|+.-++.++.|+.||.+|..+.+..-..          .+ . ......+|.++++|++.+.
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l  231 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML  231 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence            8899999999   89999999999999999999988753222          11 1 2344566699999988553

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=94.73  E-value=0.21  Score=45.61  Aligned_cols=150  Identities=17%  Similarity=0.198  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhC----CC-------EEEE
Q 042102          108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF----DC-------IIGY  176 (317)
Q Consensus       108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~  176 (317)
                      +|=-+++-+++.+|-.                   ++.|...++.|+|.|..|-.+|+.+...    |.       +++.
T Consensus         4 TaaV~lAgll~Al~~~-------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~l   64 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT-------------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWL   64 (255)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEE
T ss_pred             hHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEE
Confidence            4555677777776544                   3458899999999999999999999877    87       4777


Q ss_pred             eCCCC-----CCC-C-----------CccccCCHHHhcccC--CEEEEeccCChhhhccccHHHHhccCC---CcEEEEe
Q 042102          177 NSRTE-----KPN-L-----------NYKYYPNLIDLASNC--QILVVACSLTEETQHIVNRQVINALGP---KGVLINI  234 (317)
Q Consensus       177 ~~~~~-----~~~-~-----------~~~~~~~l~el~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---gavlVN~  234 (317)
                      +|+..     ... .           ......+|.|+++.+  |+++-+--    ..++|+++.++.|.+   .+++.=.
T Consensus        65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma~~~erPIIF~L  140 (255)
T PF03949_consen   65 VDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMAKHNERPIIFPL  140 (255)
T ss_dssp             EETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred             EeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHhccCCCCEEEEC
Confidence            77642     110 0           011124899999999  98877632    467899999999987   8999999


Q ss_pred             CCCcccCHHHHHHHHHh--CCceEEEeeCCCCCCCCC-------cccCCCCceEEcccCC
Q 042102          235 GRGLLVDEHELVSALLQ--GRLGGAGLDVFEHEPDVP-------EELIGLENVVLLPHVA  285 (317)
Q Consensus       235 ~rg~~vd~~aL~~al~~--g~i~ga~lDV~~~EP~~~-------~~L~~~pnvi~tPH~a  285 (317)
                      |....--|-.-.++.+-  |+...|     ...|.++       ...-+..|+++-|=++
T Consensus       141 SNPt~~aE~~peda~~~t~g~ai~A-----tGSpf~pv~~~Gr~~~p~Q~NN~~iFPGig  195 (255)
T PF03949_consen  141 SNPTPKAECTPEDAYEWTDGRAIFA-----TGSPFPPVEYNGRSDYPNQCNNSYIFPGIG  195 (255)
T ss_dssp             SSSCGGSSS-HHHHHHTTTSEEEEE-----ESS----EEETSCEESSCE-SGGGTHHHHH
T ss_pred             CCCCCcccCCHHHHHhhCCceEEEe-----cCCccCCeeeCCeEEecCCCCeeEeeccce
Confidence            98776333333344443  333222     2223222       1244567888888655

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.72  E-value=0.066  Score=51.36  Aligned_cols=37  Identities=14%  Similarity=0.189  Sum_probs=32.4

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 67777653

>PRK05086 malate dehydrogenase; Provisional

Probab=94.70  E-value=0.15  Score=48.06  Aligned_cols=89  Identities=12%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHh---hCCCEEEEeCCCCCCC---CCc---c--c------cCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGM-GRIGTAIAKRAE---AFDCIIGYNSRTEKPN---LNY---K--Y------YPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~---~~G~~V~~~~~~~~~~---~~~---~--~------~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|||. |.+|+.++..+.   ..+..+..+++.+...   .+.   .  .      ..++.+.++.+|+|+++.-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 999999998773   3445778888654321   000   1  0      235567889999999986542


Q ss_pred             hh---hhc-cc------cHHHHh---ccCCCcEEEEeCCC
Q 042102          211 EE---TQH-IV------NRQVIN---ALGPKGVLINIGRG  237 (317)
Q Consensus       211 ~~---t~~-li------~~~~l~---~mk~gavlVN~~rg  237 (317)
                      ..   ++- ++      -++..+   .-.+.+++++++-.
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            11   111 11      122333   33578899998653

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.64  E-value=0.038  Score=56.18  Aligned_cols=83  Identities=14%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----ccCC---HHHh-cccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YYPN---LIDL-ASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~el-~~~aDvV~~~lp~~~~t~~  215 (317)
                      .++-|+|+|++|+.+++.|+..|.+|.+.|.+++..     .+..    ...+   ++++ ++++|.++++.+.+.++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            479999999999999999999999999998765432     1111    1112   3332 6789999999988777655


Q ss_pred             cccHHHHhccCCCcEEEE
Q 042102          216 IVNRQVINALGPKGVLIN  233 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN  233 (317)
                      ++-.  ...+.+...+|-
T Consensus       498 iv~~--~~~~~~~~~iia  513 (558)
T PRK10669        498 IVAS--AREKRPDIEIIA  513 (558)
T ss_pred             HHHH--HHHHCCCCeEEE
Confidence            4432  233345555553

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.60  E-value=0.087  Score=51.71  Aligned_cols=88  Identities=22%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------CCcc--c--cCC---HH-HhcccCCEEEEeccCC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------LNYK--Y--YPN---LI-DLASNCQILVVACSLT  210 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~~--~--~~~---l~-el~~~aDvV~~~lp~~  210 (317)
                      +..+++.|+|+|.+|+.+++.|...|.+|++++.+++..       .+..  .  ..+   ++ .-+.++|.|+++.+.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            346899999999999999999999999999998765421       1111  0  112   32 2367899999888866


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ..+  ++-....+.+.+..+++-+.
T Consensus       309 ~~n--~~~~~~~~~~~~~~ii~~~~  331 (453)
T PRK09496        309 EAN--ILSSLLAKRLGAKKVIALVN  331 (453)
T ss_pred             HHH--HHHHHHHHHhCCCeEEEEEC
Confidence            433  33333445555555655443

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=94.58  E-value=1.3  Score=44.91  Aligned_cols=184  Identities=16%  Similarity=0.144  Sum_probs=116.8

Q ss_pred             hCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhh--
Q 042102           92 EKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEA--  169 (317)
Q Consensus        92 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~--  169 (317)
                      +..|++.|..-   .-+|--+++.+|+.+|-.                   +..|...+|.|+|.|..|-.+|+.+..  
T Consensus       287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~~-------------------g~~l~d~riv~~GAGsAgigia~ll~~~~  344 (581)
T PLN03129        287 RTTHLCFNDDI---QGTAAVALAGLLAALRAT-------------------GGDLADQRILFAGAGEAGTGIAELIALAM  344 (581)
T ss_pred             ccCCCEecccc---chHHHHHHHHHHHHHHHh-------------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence            46899999754   345666788888887633                   346888999999999999999999876  


Q ss_pred             ---CCC-------EEEEeCCCCC-----CC-C---------CccccCCHHHhccc--CCEEEEeccCChhhhccccHHHH
Q 042102          170 ---FDC-------IIGYNSRTEK-----PN-L---------NYKYYPNLIDLASN--CQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       170 ---~G~-------~V~~~~~~~~-----~~-~---------~~~~~~~l~el~~~--aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                         .|.       +++.+|+..-     .. .         ......+|.|+++.  .|+++-+-.    .-|.|.++.+
T Consensus       345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi  420 (581)
T PLN03129        345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSG----VGGTFTKEVL  420 (581)
T ss_pred             HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecC----CCCCCCHHHH
Confidence               466       6777776421     00 0         01123589999999  898876532    2378999999


Q ss_pred             hccC---CCcEEEEeCCCccc---CHHHHHHHHHhCCceEEEeeCCCCCCCCC-------cccCCCCceEEcccCCCccH
Q 042102          223 NALG---PKGVLINIGRGLLV---DEHELVSALLQGRLGGAGLDVFEHEPDVP-------EELIGLENVVLLPHVASATV  289 (317)
Q Consensus       223 ~~mk---~gavlVN~~rg~~v---d~~aL~~al~~g~i~ga~lDV~~~EP~~~-------~~L~~~pnvi~tPH~a~~t~  289 (317)
                      +.|.   +.+++.=.|...--   ..++.+++ .+|+...|     ..-|.++       ...-+..|+++-|=++-..-
T Consensus       421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~A-----tGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal  494 (581)
T PLN03129        421 EAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFA-----SGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGAL  494 (581)
T ss_pred             HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEE-----eCCCCCCeeeCCeeecCccccceeeccchhhHHH
Confidence            9995   88999888876532   22333332 23554323     1222222       12446679999998774322


Q ss_pred             HH-----HHHHHHHHHHHHHHHH
Q 042102          290 ET-----RKAMADLVVGNLQAHF  307 (317)
Q Consensus       290 ~~-----~~~~~~~~~~nl~~~~  307 (317)
                      .+     -+.|.-.+++.|-.+.
T Consensus       495 ~~~a~~Itd~m~~aAA~aLA~~v  517 (581)
T PLN03129        495 LSGAIRVTDDMLLAAAEALAAQV  517 (581)
T ss_pred             hcCCcCCCHHHHHHHHHHHHHhC
Confidence            11     2445555555555544

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.53  E-value=0.032  Score=51.82  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=33.0

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEK  182 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~  182 (317)
                      +.|+++.|+|.|..|++++-.|...|+ +|.+++|+..
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~  162 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS  162 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence            557899999999999999999999998 6889998754

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.50  E-value=0.11  Score=48.34  Aligned_cols=85  Identities=12%  Similarity=0.060  Sum_probs=54.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCCCCcc--ccCCHHH-hcccCCEEEEeccCChhhhccccHHHH
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNLNYK--YYPNLID-LASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~--~~~~l~e-l~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .|+++.|+|.|.+|...++.++.+|++ |.+.++.........  ...+..+ .-...|+|+-+..... +   + ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~-~---~-~~~~  218 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPS-L---I-DTLV  218 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHH-H---H-HHHH
Confidence            477899999999999999999999997 556665433221110  0111111 1234688777755321 1   1 3567


Q ss_pred             hccCCCcEEEEeCC
Q 042102          223 NALGPKGVLINIGR  236 (317)
Q Consensus       223 ~~mk~gavlVN~~r  236 (317)
                      +.++++..++.+|-
T Consensus       219 ~~l~~~G~iv~~G~  232 (308)
T TIGR01202       219 RRLAKGGEIVLAGF  232 (308)
T ss_pred             HhhhcCcEEEEEee
Confidence            78889998888763

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.48  E-value=0.35  Score=39.76  Aligned_cols=31  Identities=23%  Similarity=0.267  Sum_probs=27.8

Q ss_pred             eEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      +|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998 68888764

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.47  E-value=0.042  Score=56.42  Aligned_cols=87  Identities=25%  Similarity=0.312  Sum_probs=60.0

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----ccCC---HHHh-cccCCEEEEeccCChhhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YYPN---LIDL-ASNCQILVVACSLTEETQ  214 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~el-~~~aDvV~~~lp~~~~t~  214 (317)
                      ..++-|+|+|++|+.+++.|...|.++++.|.+++..     .+..    ...+   ++++ +.+||.++++.+..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            4579999999999999999999999999998776431     1111    1122   3333 789999999999877665


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                      .++  ...+.+.|...+|--+|
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeC
Confidence            443  23444556656555444

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=94.44  E-value=0.2  Score=47.13  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=47.6

Q ss_pred             ccCCeEEEEec---ChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEE
Q 042102          146 FTGKSVGILGM---GRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVV  205 (317)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~  205 (317)
                      +.|.+|+++|=   +++.++.+..+..+|+ +|.+..+..-..     .......+++++++.+|+|..
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence            77999999998   5999999999999999 898877643211     112335789999999999976

>PRK13529 malate dehydrogenase; Provisional

Probab=94.39  E-value=2.6  Score=42.77  Aligned_cols=209  Identities=13%  Similarity=0.165  Sum_probs=129.4

Q ss_pred             cCCCceEEEECCCCCCc-CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccc
Q 042102           68 SLPKLEIVATCSVGLDK-IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKF  146 (317)
Q Consensus        68 ~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l  146 (317)
                      .+|+. +|+.=--+..+ +.+..-.+..|++.|..-   .-+|--+++.+|+.+|-.                   +..|
T Consensus       237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi---QGTaaV~LAgll~A~r~~-------------------g~~l  293 (563)
T PRK13529        237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI---QGTGAVTLAGLLAALKIT-------------------GEPL  293 (563)
T ss_pred             hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc---chHHHHHHHHHHHHHHHh-------------------CCCh
Confidence            34564 55555444433 344344456899999764   345566788888887633                   3458


Q ss_pred             cCCeEEEEecChhHHHHHHHHhh----CCC-------EEEEeCCCCC---CCCC-------c----c---------ccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA----FDC-------IIGYNSRTEK---PNLN-------Y----K---------YYPN  192 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~----~G~-------~V~~~~~~~~---~~~~-------~----~---------~~~~  192 (317)
                      ...++.|+|.|..|-.+|+.+..    .|.       +++.+|+..-   ....       +    .         ...+
T Consensus       294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~  373 (563)
T PRK13529        294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVIS  373 (563)
T ss_pred             hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCC
Confidence            88999999999999999999875    577       6888776421   0000       0    0         1147


Q ss_pred             HHHhcccC--CEEEEeccCChhhhccccHHHHhccCC---CcEEEEeCCCcccCHHHHHHHHH--hCCceEEEeeCCCCC
Q 042102          193 LIDLASNC--QILVVACSLTEETQHIVNRQVINALGP---KGVLINIGRGLLVDEHELVSALL--QGRLGGAGLDVFEHE  265 (317)
Q Consensus       193 l~el~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---gavlVN~~rg~~vd~~aL~~al~--~g~i~ga~lDV~~~E  265 (317)
                      |.|+++.+  |+++-+--    .-|.|+++.++.|.+   .+++.=.|+...-.|-.-.++.+  +|+...|     ..-
T Consensus       374 L~e~v~~~kPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~A-----tGs  444 (563)
T PRK13529        374 LLEVVRNVKPTVLIGVSG----QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVA-----TGS  444 (563)
T ss_pred             HHHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEE-----ECC
Confidence            89999988  98776521    247899999999987   89999998876633333333333  4544323     122


Q ss_pred             CCCC-------cccCCCCceEEcccCCCccHH-----HHHHHHHHHHHHHHHHHC
Q 042102          266 PDVP-------EELIGLENVVLLPHVASATVE-----TRKAMADLVVGNLQAHFG  308 (317)
Q Consensus       266 P~~~-------~~L~~~pnvi~tPH~a~~t~~-----~~~~~~~~~~~nl~~~~~  308 (317)
                      |.++       ...-+..|+++-|=++-..-.     .-+.|.-.+++.|-++..
T Consensus       445 pf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~  499 (563)
T PRK13529        445 PFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP  499 (563)
T ss_pred             CCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence            2222       123467799999987742221     124454555555554443

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.38  E-value=0.092  Score=51.98  Aligned_cols=109  Identities=14%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             cccCCeEEEEecChhHHH-HHHHHhhCCCEEEEeCCCCCCC------CCcccc-CCHHHhcccCCEEEEec--cC-Chhh
Q 042102          145 KFTGKSVGILGMGRIGTA-IAKRAEAFDCIIGYNSRTEKPN------LNYKYY-PNLIDLASNCQILVVAC--SL-TEET  213 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~-~a~~l~~~G~~V~~~~~~~~~~------~~~~~~-~~l~el~~~aDvV~~~l--p~-~~~t  213 (317)
                      ..+++++.|+|+|..|.+ +|+.|+..|++|.++|......      .+.... ..-.+.+..+|+|+..-  |. ++..
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~   83 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPEL   83 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHH
Confidence            356789999999999999 7999999999999999754321      111111 11234456899887753  32 2222


Q ss_pred             h-------ccccHHHH-hc-cCCC-cEEEEeCCCcccCHHHHHHHHHhCC
Q 042102          214 Q-------HIVNRQVI-NA-LGPK-GVLINIGRGLLVDEHELVSALLQGR  253 (317)
Q Consensus       214 ~-------~li~~~~l-~~-mk~g-avlVN~~rg~~vd~~aL~~al~~g~  253 (317)
                      .       .++++-.+ .. +++. .+-|--+.|..--..-+.+.|+...
T Consensus        84 ~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         84 VAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            1       23444333 33 3333 3344445788877777777776554

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.38  E-value=0.075  Score=52.68  Aligned_cols=106  Identities=12%  Similarity=0.089  Sum_probs=63.4

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc------c-ccCCHHHhcccCCEEEEec--cC-Chhh--
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY------K-YYPNLIDLASNCQILVVAC--SL-TEET--  213 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~------~-~~~~l~el~~~aDvV~~~l--p~-~~~t--  213 (317)
                      -.|++|+|+|+|.-|.++++.|+. |++|.++|.........      . ......+.+.++|+|+..-  |. ++..  
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~   82 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKI   82 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence            357899999999999999999995 99999998543221100      0 0111234567899887753  22 2221  


Q ss_pred             -----hccccHHHH--hccCCCcEE-EEeCCCcccCHHHHHHHHHhC
Q 042102          214 -----QHIVNRQVI--NALGPKGVL-INIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       214 -----~~li~~~~l--~~mk~gavl-VN~~rg~~vd~~aL~~al~~g  252 (317)
                           ..++++-.|  ..+++..++ |--+.|..--..-+.+.|+..
T Consensus        83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence                 123433333  333332333 444568877777777777753

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.38  E-value=0.14  Score=48.14  Aligned_cols=76  Identities=14%  Similarity=0.186  Sum_probs=50.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCC-EEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhcc-
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL-  225 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~m-  225 (317)
                      .+|+|+| .|..|+++.+.|..-.. ++.....+.....     .+.++.++++|++++++|...+      .+....+ 
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~~s------~~~~~~~~   71 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDDAA------REAVALID   71 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHHHH------HHHHHHHH
Confidence            4899999 79999999999986653 5554433322211     2345567889999999995433      2222222 


Q ss_pred             CCCcEEEEeC
Q 042102          226 GPKGVLINIG  235 (317)
Q Consensus       226 k~gavlVN~~  235 (317)
                      +.|..+||.|
T Consensus        72 ~~g~~VIDlS   81 (313)
T PRK11863         72 NPATRVIDAS   81 (313)
T ss_pred             hCCCEEEECC
Confidence            4688889887

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.36  E-value=0.2  Score=47.53  Aligned_cols=106  Identities=11%  Similarity=0.170  Sum_probs=63.9

Q ss_pred             CeEEEEecChhHHHHHHHHhh--------CCCEEE-EeCCCCC--CCCC--------------cc-c-cC--CHHHhc-c
Q 042102          149 KSVGILGMGRIGTAIAKRAEA--------FDCIIG-YNSRTEK--PNLN--------------YK-Y-YP--NLIDLA-S  198 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~--------~G~~V~-~~~~~~~--~~~~--------------~~-~-~~--~l~el~-~  198 (317)
                      ++|+|+|+|++|+.+++.+..        ++.+|. +.|++..  ...+              .. . ..  ++++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            379999999999999999865        566765 4444321  0000              00 0 11  455553 4


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG  255 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~  255 (317)
                      ++|+|+=+.|...+-..- -.-..+.|+.|.-+|-..-|.+. ..+.|.+..+++...
T Consensus        81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence            689999888753210101 12234556788888877777765 556777777766554

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.34  E-value=0.35  Score=45.73  Aligned_cols=96  Identities=11%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCCCC--CCC---------------ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTEKP--NLN---------------YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~---------------~~~~~~l~el~~~aDvV  203 (317)
                      ++|+|||. |.+|..+|..+...|.       ++..+|.....  ..+               .....+..+.++.||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999998876554       68888874322  100               01123456889999999


Q ss_pred             EEeccCCh---hhhc-cc--cH-------HHHhccC-CCcEEEEeCCCcccCHHHHH
Q 042102          204 VVACSLTE---ETQH-IV--NR-------QVINALG-PKGVLINIGRGLLVDEHELV  246 (317)
Q Consensus       204 ~~~lp~~~---~t~~-li--~~-------~~l~~mk-~gavlVN~~rg~~vd~~aL~  246 (317)
                      +++.-...   +|+- ++  |.       ..+.... |.+++|.++  ..+|.-..+
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  137 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI  137 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence            98754321   1211 11  11       1222334 588999886  556555433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.32  E-value=0.072  Score=51.39  Aligned_cols=37  Identities=14%  Similarity=0.244  Sum_probs=32.8

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|.+.+|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46899999999999999999999999998 77777653

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.31  E-value=0.22  Score=48.93  Aligned_cols=103  Identities=19%  Similarity=0.271  Sum_probs=61.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhC----------CCEEE-EeCCCCCCCC-----CccccCCHHHhcc--cCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF----------DCIIG-YNSRTEKPNL-----NYKYYPNLIDLAS--NCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~-~~~~~~~~~~-----~~~~~~~l~el~~--~aDvV~~~lp~~  210 (317)
                      .+|||+|+|.+|+.+++.+...          +.+|. +++++.....     ......++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            4899999999999998887432          45543 5566543321     1234567889885  479999887653


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG  255 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~  255 (317)
                      ....    .-..+.|+.|.-+|...-+... .-+.|.++.++....
T Consensus        84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            2211    1122445666555533222222 335777777776654

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.26  E-value=0.11  Score=48.09  Aligned_cols=62  Identities=23%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCCcc--ccCCHH-Hh-cccCCEEEEeccC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYK--YYPNLI-DL-ASNCQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~--~~~~l~-el-~~~aDvV~~~lp~  209 (317)
                      ++++.|+|.|..+++++..|+..|+ +|.+++|+.++.....  ...+.. ++ ...+|+|+.+.|.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~  188 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPI  188 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCcc
Confidence            4689999999999999999999998 5999999865331110  001111 11 2447788887774

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.26  E-value=0.11  Score=51.28  Aligned_cols=108  Identities=12%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---------CCccc--cCCHHHhcccCCEEEEeccCC---h
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---------LNYKY--YPNLIDLASNCQILVVACSLT---E  211 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~--~~~l~el~~~aDvV~~~lp~~---~  211 (317)
                      +.++++.|+|.|.+|.++|+.|...|++|.++|......         .+...  ....++.+..+|+|+..--..   +
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            568899999999999999999999999999998654321         01111  111233456799888763332   2


Q ss_pred             hhh-------ccccH-HHHhc-cC---CCcEEEEeCCCcccCHHHHHHHHHhCC
Q 042102          212 ETQ-------HIVNR-QVINA-LG---PKGVLINIGRGLLVDEHELVSALLQGR  253 (317)
Q Consensus       212 ~t~-------~li~~-~~l~~-mk---~gavlVN~~rg~~vd~~aL~~al~~g~  253 (317)
                      ...       .++.+ +.+.. ++   ...+-|--+.|..--..-+.+.|+...
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            221       12222 23323 32   123344445688777777777776533

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.25  E-value=0.12  Score=50.34  Aligned_cols=36  Identities=17%  Similarity=0.265  Sum_probs=31.8

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ..|.+.+|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~   74 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF   74 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            46889999999999999999999999898 6777764

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.23  E-value=0.17  Score=47.75  Aligned_cols=85  Identities=16%  Similarity=0.246  Sum_probs=57.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc-----cCCHHHhcc---cCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY-----YPNLIDLAS---NCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~el~~---~aDvV~~~lp~~~~  212 (317)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++++..     .++..     ..++.++..   ..|+++-+.... .
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~  247 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S  247 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence            58899999999999999999999999 588877664332     12111     112333332   268887775532 2


Q ss_pred             hhccccHHHHhccCCCcEEEEeCC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      +    -...++.+++|..+|.+|.
T Consensus       248 ~----~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        248 S----INTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H----HHHHHHHhhcCCEEEEEcc
Confidence            1    1456778899999999875

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.12  E-value=0.15  Score=49.91  Aligned_cols=69  Identities=9%  Similarity=0.048  Sum_probs=53.3

Q ss_pred             cccccCCeEEEEec----------ChhHHHHHHHHhhCC-CEEEEeCCCCCCCC----CccccCCHHHhcccCCEEEEec
Q 042102          143 TTKFTGKSVGILGM----------GRIGTAIAKRAEAFD-CIIGYNSRTEKPNL----NYKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       143 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDvV~~~l  207 (317)
                      +.++.|++|+|+|+          ..-...+++.|+..| ++|.+||+......    ......++++.++.||+|+++.
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            34578999999998          557789999999996 99999998743211    1112468899999999999998


Q ss_pred             cCCh
Q 042102          208 SLTE  211 (317)
Q Consensus       208 p~~~  211 (317)
                      +..+
T Consensus       395 ~~~~  398 (415)
T PRK11064        395 DHSQ  398 (415)
T ss_pred             CCHH
Confidence            8653

>PRK07411 hypothetical protein; Validated

Probab=94.08  E-value=0.12  Score=50.25  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=31.9

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ..|...+|+|||+|.+|..+++.|...|. ++..+|.
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~   70 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF   70 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            46899999999999999999999999998 6777764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.07  E-value=0.052  Score=44.34  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      .++|.|+|+|.+|..+++.|...|+ ++..+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            5799999999999999999999998 67777753

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.07  E-value=0.18  Score=44.82  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.|+++.|.|. |.||+.+++.|...|++|.+..|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999996 8999999999999999998877653

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=94.04  E-value=0.09  Score=56.92  Aligned_cols=64  Identities=17%  Similarity=0.145  Sum_probs=44.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhC-CCE-------------EEEeCCCCCCC-------CCc---cc-cCCHH---Hhcc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAF-DCI-------------IGYNSRTEKPN-------LNY---KY-YPNLI---DLAS  198 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~-G~~-------------V~~~~~~~~~~-------~~~---~~-~~~l~---el~~  198 (317)
                      ..++|+|||.|.||+..++.|... +.+             |.+.|++.+..       .+.   .. ..+.+   ++++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            467999999999999999999754 233             77788765321       011   11 23444   4457


Q ss_pred             cCCEEEEeccCC
Q 042102          199 NCQILVVACSLT  210 (317)
Q Consensus       199 ~aDvV~~~lp~~  210 (317)
                      ++|+|++++|..
T Consensus       648 ~~DaVIsalP~~  659 (1042)
T PLN02819        648 QVDVVISLLPAS  659 (1042)
T ss_pred             CCCEEEECCCch
Confidence            899999999974

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=94.00  E-value=0.24  Score=47.29  Aligned_cols=85  Identities=20%  Similarity=0.337  Sum_probs=55.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccc---cC---CHHHhcccCCEEEEeccCChhhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKY---YP---NLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~---~~---~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .|.+|.|.|.|.+|..+++.++.+|.+|++.+.+....      .+...   ..   .+.++....|+++-+..... + 
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~-~-  260 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVH-A-  260 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHH-H-
Confidence            57899999999999999999999999987665443221      12111   11   12233335687776654211 1 


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                        + ...++.++++..+|.++.
T Consensus       261 --~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        261 --L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             --H-HHHHHHhcCCcEEEEeCC
Confidence              1 345677888888888764

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.00  E-value=0.13  Score=48.79  Aligned_cols=85  Identities=21%  Similarity=0.312  Sum_probs=56.3

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC---CCCC-----CCcccc----CCHHH--hcccCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT---EKPN-----LNYKYY----PNLID--LASNCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~---~~~~-----~~~~~~----~~l~e--l~~~aDvV~~~lp~~~~  212 (317)
                      .|.+|.|+|.|.+|..+++.++..|++|++.+++   +++.     .++...    .+..+  .....|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            5789999999999999999999999999988763   2111     111111    11111  2235788887765221 


Q ss_pred             hhccccHHHHhccCCCcEEEEeCC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                         .+ ...++.++++..++.+|.
T Consensus       251 ---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             ---HH-HHHHHHccCCcEEEEEec
Confidence               12 456777888888888764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=93.95  E-value=0.25  Score=46.66  Aligned_cols=91  Identities=24%  Similarity=0.285  Sum_probs=63.4

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhh-------CCCEEEEe--CCCCCC--C----------------C------CccccCC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEA-------FDCIIGYN--SRTEKP--N----------------L------NYKYYPN  192 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~-------~G~~V~~~--~~~~~~--~----------------~------~~~~~~~  192 (317)
                      -.-++|+|||.|+=|+.+|+.+..       |..+|..|  +.....  .                +      ......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            345799999999999999998852       33345433  211111  0                0      1123468


Q ss_pred             HHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          193 LIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       193 l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      +.+++.+||+++..+|-+-- .. |.++.....|+++..|.+.-|=
T Consensus        99 l~ea~~dADilvf~vPhQf~-~~-ic~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPHQFI-PR-ICEQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             HHHHhccCCEEEEeCChhhH-HH-HHHHHhcccCCCCeEEEeecce
Confidence            99999999999999996543 22 4567788899999999987763

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.93  E-value=0.11  Score=38.39  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=31.1

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      ++.|||.|.+|-.+|..++.+|.+|..+.+.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58999999999999999999999999888776544

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.91  E-value=0.095  Score=51.50  Aligned_cols=107  Identities=16%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------Ccccc--CCHHHhccc-CCEEEEec--cC-C
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYKYY--PNLIDLASN-CQILVVAC--SL-T  210 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~-aDvV~~~l--p~-~  210 (317)
                      +.|+++.|+|.|.+|.++|+.|+..|++|.++|+......         +....  ....+++.. +|+|+..-  |. .
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~   82 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN   82 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence            6789999999999999999999999999999986542210         11111  122334444 89887754  22 2


Q ss_pred             hh-------hhccccHHHH-hccCC-CcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          211 EE-------TQHIVNRQVI-NALGP-KGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       211 ~~-------t~~li~~~~l-~~mk~-gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      +.       ...++.+-.| ..+.+ ..+-|--+.|..--..-+.+.|+..
T Consensus        83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            21       1122333333 23333 3344555678877777777777653

>PRK04148 hypothetical protein; Provisional

Probab=93.87  E-value=0.11  Score=42.78  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=43.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------Ccc---ccCCHHHhcccCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------NYK---YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~---~~~~l~el~~~aDvV~~~lp  208 (317)
                      +++++..||+| -|..+|..|+..|.+|++.|.++....       .+.   ....-.++-+.+|+|-..-|
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp   86 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP   86 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence            56789999999 899999999999999999998765321       110   11223355666776665555

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=93.84  E-value=0.22  Score=46.64  Aligned_cols=83  Identities=17%  Similarity=0.135  Sum_probs=52.8

Q ss_pred             CCeEEEEecChhHHHHHHHHhh-CCCEEE-EeCCCCCCC-------CCccc-cCCHHHhcc-----cCCEEEEeccCChh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEA-FDCIIG-YNSRTEKPN-------LNYKY-YPNLIDLAS-----NCQILVVACSLTEE  212 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------~~~~~-~~~l~el~~-----~aDvV~~~lp~~~~  212 (317)
                      ..++||||.|.||+..+..+.. -++++. +++++++..       .+... +.+.+++++     +.|+|+.+.|....
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4689999999999996666654 356664 566554321       22222 467888874     58889999885432


Q ss_pred             hhccccHHHHhccCCCcEEEEeC
Q 042102          213 TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      -+     -.....+.|..+|+-+
T Consensus        84 ~e-----~a~~a~eaGk~VID~s  101 (302)
T PRK08300         84 VR-----HAAKLREAGIRAIDLT  101 (302)
T ss_pred             HH-----HHHHHHHcCCeEEECC
Confidence            21     1223346677777765

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.80  E-value=0.063  Score=46.52  Aligned_cols=62  Identities=15%  Similarity=0.178  Sum_probs=44.0

Q ss_pred             eEEEEecChhHHHHHHH--HhhCCCEE-EEeCCCCCCC----CC--ccccCCHHHhcc--cCCEEEEeccCCh
Q 042102          150 SVGILGMGRIGTAIAKR--AEAFDCII-GYNSRTEKPN----LN--YKYYPNLIDLAS--NCQILVVACSLTE  211 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~--l~~~G~~V-~~~~~~~~~~----~~--~~~~~~l~el~~--~aDvV~~~lp~~~  211 (317)
                      ++.|||.|++|++++..  .+..||++ .+||..++.-    .+  ....+++++.++  +.|+.++|+|...
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~  158 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH  158 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence            69999999999999874  35788986 4788765421    11  122456777777  6778999999643

>PRK15076 alpha-galactosidase; Provisional

Probab=93.80  E-value=0.088  Score=51.85  Aligned_cols=109  Identities=10%  Similarity=0.069  Sum_probs=66.2

Q ss_pred             CeEEEEecChhHHHHHH--HH---hhC-CCEEEEeCCCCCCCC-------------C----ccccCCHHHhcccCCEEEE
Q 042102          149 KSVGILGMGRIGTAIAK--RA---EAF-DCIIGYNSRTEKPNL-------------N----YKYYPNLIDLASNCQILVV  205 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~--~l---~~~-G~~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDvV~~  205 (317)
                      ++|+|||.|.+|...+-  .+   .++ |.+|..+|..++...             +    .....++.+.++.||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            48999999999955433  22   333 458999997653211             1    1124577899999999999


Q ss_pred             eccCC--hhh----------hccc-----------------c-------HHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          206 ACSLT--EET----------QHIV-----------------N-------RQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       206 ~lp~~--~~t----------~~li-----------------~-------~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      +.-..  +.-          .|++                 +       .+.++...|++++||.+...=+-..++. .+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            86653  111          0111                 1       1233445689999999876645555555 33


Q ss_pred             HhCCceEEE
Q 042102          250 LQGRLGGAG  258 (317)
Q Consensus       250 ~~g~i~ga~  258 (317)
                      ...++.|.+
T Consensus       161 ~~~rviG~c  169 (431)
T PRK15076        161 PGIKTVGLC  169 (431)
T ss_pred             CCCCEEEEC
Confidence            445666554

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.79  E-value=0.083  Score=54.47  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=57.0

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----ccCC---HHH-hcccCCEEEEeccCChhhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YYPN---LID-LASNCQILVVACSLTEETQ  214 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~e-l~~~aDvV~~~lp~~~~t~  214 (317)
                      ..+|-|+|+|++|+.+++.|...|.++.+.|.+++..     .+..    ...+   +++ =++++|.++++.+.++.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            4689999999999999999999999998888765421     1211    1122   232 2678999999998777655


Q ss_pred             ccccHHHHhccCCCcEEEE
Q 042102          215 HIVNRQVINALGPKGVLIN  233 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN  233 (317)
                      .++  ...+.+.|...++-
T Consensus       480 ~i~--~~ar~~~p~~~iia  496 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIA  496 (621)
T ss_pred             HHH--HHHHHhCCCCeEEE
Confidence            433  23444455555544

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.69  E-value=0.18  Score=46.13  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~  181 (317)
                      .|.+|.|+|.|.+|..+++.++.+|++ |++.+++.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~  155 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP  155 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            688999999999999999999999996 87776554

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.66  E-value=0.24  Score=46.80  Aligned_cols=86  Identities=13%  Similarity=0.164  Sum_probs=55.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhh-CC-CEEEEeCCCCCCCC---CccccCCHHHhcc--cCCEEEEeccC--Chhhhccc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA-FD-CIIGYNSRTEKPNL---NYKYYPNLIDLAS--NCQILVVACSL--TEETQHIV  217 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~---~~~~~~~l~el~~--~aDvV~~~lp~--~~~t~~li  217 (317)
                      .|.+|.|+|.|.+|...++.++. +| .+|++.++++.+..   ........+++..  ..|+|+=+...  ++.+   +
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~~~~~~---~  239 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGRGSQSA---I  239 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCCccHHH---H
Confidence            47899999999999999998885 55 57888887654321   1111011122222  36888877653  2221   2


Q ss_pred             cHHHHhccCCCcEEEEeCC
Q 042102          218 NRQVINALGPKGVLINIGR  236 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~r  236 (317)
                       ...++.++++..++.+|-
T Consensus       240 -~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         240 -NQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             -HHHHHhCcCCcEEEEEee
Confidence             356778999999888764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.66  E-value=0.54  Score=44.20  Aligned_cols=107  Identities=21%  Similarity=0.307  Sum_probs=62.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCC--CCCC-------------C--cc--ccCCHHHhcccCCEEEEe
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTE--KPNL-------------N--YK--YYPNLIDLASNCQILVVA  206 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~--~~~~-------------~--~~--~~~~l~el~~~aDvV~~~  206 (317)
                      ++|+|+|. |.+|..++..|...|.  +|..+|+..  +...             +  ..  ...+. +.++.||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            58999998 9999999999988776  488888743  2110             0  00  11243 459999999998


Q ss_pred             ccCChh---hh-cc-------cc--HHHHhccCCCcEEEEeCCCcccCHHHHHH----HHHhCCceEEE
Q 042102          207 CSLTEE---TQ-HI-------VN--RQVINALGPKGVLINIGRGLLVDEHELVS----ALLQGRLGGAG  258 (317)
Q Consensus       207 lp~~~~---t~-~l-------i~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~----al~~g~i~ga~  258 (317)
                      ......   ++ .+       +.  ...+....+++++|+++  ..+|.-..+-    -+..+++.|.+
T Consensus        80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g  146 (309)
T cd05294          80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG  146 (309)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence            753211   21 11       10  11233345677877776  5555443222    13345555553

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=93.65  E-value=0.63  Score=43.84  Aligned_cols=62  Identities=10%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC------------CC-ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN------------LN-YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~-~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|++|++||- +++.++.+..+..+|++|.+..+..-..            .+ .....++++.++.+|+|..-
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            378999999997 6899999999999999998887644210            01 12246899999999999874

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=93.53  E-value=5.3  Score=40.52  Aligned_cols=208  Identities=13%  Similarity=0.115  Sum_probs=126.5

Q ss_pred             cCCCceEEEECCCCCCc-CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccc
Q 042102           68 SLPKLEIVATCSVGLDK-IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKF  146 (317)
Q Consensus        68 ~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l  146 (317)
                      .+|+ -+|+.=--+..| +.+..-.+..|++.|..-   .-+|-.+++.+|+.+|-.                   +..|
T Consensus       239 ~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDi---QGTaaV~lAgll~Alr~~-------------------g~~l  295 (559)
T PTZ00317        239 RWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFNDDI---QGTGAVIAAGFLNALKLS-------------------GVPP  295 (559)
T ss_pred             hCCC-eEEehhhcCCccHHHHHHHhccCCCEecccc---hhHHHHHHHHHHHHHHHh-------------------CCCh
Confidence            4566 355555444433 333333345699999754   445666788888887733                   3458


Q ss_pred             cCCeEEEEecChhHHHHHHHHhh----CCC-------EEEEeCCCC-----CC--CC-------C-c--cc---cCCHHH
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA----FDC-------IIGYNSRTE-----KP--NL-------N-Y--KY---YPNLID  195 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~----~G~-------~V~~~~~~~-----~~--~~-------~-~--~~---~~~l~e  195 (317)
                      ...++.|+|.|..|-.+|+.+..    .|.       +++.+|+..     ..  ..       . .  ..   ..+|.|
T Consensus       296 ~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e  375 (559)
T PTZ00317        296 EEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLED  375 (559)
T ss_pred             hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHH
Confidence            88999999999999999998873    576       677777542     00  00       0 0  11   347999


Q ss_pred             hcccC--CEEEEeccCChhhhccccHHHHhccCC---CcEEEEeCCCcccCHHHHHHHHH--hCCceEEEeeCCCCCCCC
Q 042102          196 LASNC--QILVVACSLTEETQHIVNRQVINALGP---KGVLINIGRGLLVDEHELVSALL--QGRLGGAGLDVFEHEPDV  268 (317)
Q Consensus       196 l~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---gavlVN~~rg~~vd~~aL~~al~--~g~i~ga~lDV~~~EP~~  268 (317)
                      +++..  |+++-+--    .-|.|.++.++.|.+   .+++.=.|+..---|-.-.++.+  +|+...|.     .-|.+
T Consensus       376 ~v~~~KPtvLIG~S~----~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~At-----Gspf~  446 (559)
T PTZ00317        376 VVRFVKPTALLGLSG----VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVAS-----GSPFP  446 (559)
T ss_pred             HHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEE-----CCCCC
Confidence            99998  98876521    247899999999984   89999988865432222223333  45543231     12222


Q ss_pred             C----c---ccCCCCceEEcccCCCccHH-----HHHHHHHHHHHHHHHHH
Q 042102          269 P----E---ELIGLENVVLLPHVASATVE-----TRKAMADLVVGNLQAHF  307 (317)
Q Consensus       269 ~----~---~L~~~pnvi~tPH~a~~t~~-----~~~~~~~~~~~nl~~~~  307 (317)
                      +    .   ..-+..|+++-|=++-..-.     .-+.|.-.+++.|-++.
T Consensus       447 pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v  497 (559)
T PTZ00317        447 PVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLV  497 (559)
T ss_pred             CcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhC
Confidence            1    1   23466799999987642221     12444444555554443

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.53  E-value=0.16  Score=50.06  Aligned_cols=105  Identities=10%  Similarity=0.116  Sum_probs=63.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----C-----Ccccc--CCHHHhcccCCEEEEec--cC-Chhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----L-----NYKYY--PNLIDLASNCQILVVAC--SL-TEET  213 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~-----~~~~~--~~l~el~~~aDvV~~~l--p~-~~~t  213 (317)
                      .-+++|+|+|.+|.++|+.|+..|++|.++|......    .     +....  ..-.+.+.++|+|+..-  |. +|..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~   85 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL   85 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence            3489999999999999999999999999999654321    0     11111  11234456889887653  32 2221


Q ss_pred             h-------ccccH-HHHh-ccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          214 Q-------HIVNR-QVIN-ALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       214 ~-------~li~~-~~l~-~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      .       .++++ +.+. .++...+-|--+.|..--..-+...|+..
T Consensus        86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~  133 (448)
T PRK03803         86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA  133 (448)
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            1       13332 2332 23333344554578877777777777653

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.48  E-value=0.3  Score=46.05  Aligned_cols=91  Identities=16%  Similarity=0.238  Sum_probs=57.2

Q ss_pred             eEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CC----cc-c--c--CCHHHhcccCCEEEEeccCCh-
Q 042102          150 SVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LN----YK-Y--Y--PNLIDLASNCQILVVACSLTE-  211 (317)
Q Consensus       150 ~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~----~~-~--~--~~l~el~~~aDvV~~~lp~~~-  211 (317)
                      +|+|||. |.+|..+|-.|...+.  ++..+|..+...     ..    .. .  .  .++.+.++.||+|+++..... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            6899999 9999999998876664  688888755211     00    01 1  1  134689999999998855321 


Q ss_pred             --hhh--------cccc--HHHHhccCCCcEEEEeCCCcccCH
Q 042102          212 --ETQ--------HIVN--RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       212 --~t~--------~li~--~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                        .++        .++.  .+.+..-.|++++|+++-  ++|.
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv  121 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS  121 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence              111        1111  122334468999999854  4553

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.45  E-value=0.27  Score=45.97  Aligned_cols=84  Identities=18%  Similarity=0.298  Sum_probs=54.9

Q ss_pred             EEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC----------Cc----c-c-cCCHHHhcccCCEEEEeccCChh
Q 042102          151 VGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL----------NY----K-Y-YPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~----------~~----~-~-~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      |+|||.|.+|..+|-.+...|.  ++..+|.......          ..    . . ..+ .+.++.||+|+++......
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            5899999999999999988884  7999998654211          00    0 1 123 4689999999998753221


Q ss_pred             ---hh--------cccc--HHHHhccCCCcEEEEeC
Q 042102          213 ---TQ--------HIVN--RQVINALGPKGVLINIG  235 (317)
Q Consensus       213 ---t~--------~li~--~~~l~~mk~gavlVN~~  235 (317)
                         ++        .++.  .+.+....|++++|+++
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence               11        1111  12233445889999987

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=93.45  E-value=0.4  Score=45.67  Aligned_cols=62  Identities=15%  Similarity=0.123  Sum_probs=45.6

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHh-hCCCEEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAE-AFDCIIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|+||+++|=   +++..+.+..+. .+|++|.+..+..-...          +  .....++++.++.+|+|..-
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            488999999999   578888888766 45999987776432110          1  22347899999999999884

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=93.44  E-value=0.078  Score=42.11  Aligned_cols=95  Identities=19%  Similarity=0.273  Sum_probs=58.0

Q ss_pred             ecChhHHHHHHHHhhC----CCEEE-EeCCCC--CCC-----CCccccCCHHHhcc--cCCEEEEeccCChhhhccccHH
Q 042102          155 GMGRIGTAIAKRAEAF----DCIIG-YNSRTE--KPN-----LNYKYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       155 G~G~iG~~~a~~l~~~----G~~V~-~~~~~~--~~~-----~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      |+|.||+.+++.+...    +++|. +++++.  ...     .......++++++.  ..|+|+=|.+. +...    +-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVA----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHH----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHH----HH
Confidence            8999999999999765    67764 556651  110     12234578999988  89999988443 2222    33


Q ss_pred             HHhccCCCcEEEEeCCCcccC---HHHHHHHHHhCCc
Q 042102          221 VINALGPKGVLINIGRGLLVD---EHELVSALLQGRL  254 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd---~~aL~~al~~g~i  254 (317)
                      ..+.++.|.-+|-.+-+.+.|   .+.|.++.+++..
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~  112 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV  112 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence            455677888889888888873   3355555555443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=93.44  E-value=0.44  Score=45.49  Aligned_cols=106  Identities=14%  Similarity=0.040  Sum_probs=66.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--CCEEE-EeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCC-hhhhcccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--DCIIG-YNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLT-EETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~-~~t~~li~  218 (317)
                      .+|||||. .+|+.-++.++..  ++++. ++|+..+..      .+...+.+++++++..|++++++|.+ +...|  -
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H--~   80 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQG--S   80 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccH--H
Confidence            58999999 6899888888765  46754 677765432      13335789999999999999998743 21111  1


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGA  257 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga  257 (317)
                      +-..+.|+.|.-++.=--=..-+.++|+++.++..+...
T Consensus        81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            223334555533322211113456678888887777633

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PLN00106 malate dehydrogenase

Probab=93.28  E-value=0.22  Score=47.18  Aligned_cols=92  Identities=15%  Similarity=0.254  Sum_probs=58.0

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCC--CC-------cc-----ccCCHHHhcccCCEEEEeccC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPN--LN-------YK-----YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~--~~-------~~-----~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ..++|+|+|. |++|..+|..|...+.  ++..+|..+...  .+       ..     ...++.+.++.||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            4569999999 9999999999985554  788888755111  00       01     123457899999999887443


Q ss_pred             Ch---hhhc-cc--c----HH---HHhccCCCcEEEEeCCCc
Q 042102          210 TE---ETQH-IV--N----RQ---VINALGPKGVLINIGRGL  238 (317)
Q Consensus       210 ~~---~t~~-li--~----~~---~l~~mk~gavlVN~~rg~  238 (317)
                      ..   .++. ++  |    ++   .+....+.+++++++-.-
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            11   1121 11  1    12   233345889999986543

>cd00704 MDH Malate dehydrogenase

Probab=93.28  E-value=0.81  Score=43.34  Aligned_cols=101  Identities=13%  Similarity=0.162  Sum_probs=60.9

Q ss_pred             eEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCC--CCCCC-------c--------cccCCHHHhcccCCEEE
Q 042102          150 SVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTE--KPNLN-------Y--------KYYPNLIDLASNCQILV  204 (317)
Q Consensus       150 ~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~--~~~~~-------~--------~~~~~l~el~~~aDvV~  204 (317)
                      +|+|+|. |.+|+.++..|...|.       .+..+|...  ....+       .        ....+..+.++.||+|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            7999999 9999999998876553       478888765  32111       0        01145678999999998


Q ss_pred             EeccC--Ch-hhhc-cc--c----H---HHHhcc-CCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          205 VACSL--TE-ETQH-IV--N----R---QVINAL-GPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       205 ~~lp~--~~-~t~~-li--~----~---~~l~~m-k~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      ++.-.  .+ +++- ++  |    +   ..+... +|++++|.++  ..+|.-..+-.-.+|
T Consensus        82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~k~sg  141 (323)
T cd00704          82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIALKNAP  141 (323)
T ss_pred             EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHHHHHcC
Confidence            87432  11 1211 11  1    1   123334 5888888885  666655444333333

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.21  E-value=0.47  Score=44.70  Aligned_cols=87  Identities=16%  Similarity=0.224  Sum_probs=56.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCCC---------C-cc-c---c-CCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPNL---------N-YK-Y---Y-PNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------~-~~-~---~-~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|||. |.+|..+|-.+...|.  ++..+|.. ....         . .. .   . .++.+.++.||+|+++.-..
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            48999999 9999999999987775  68888765 2210         0 01 1   1 23468899999999875432


Q ss_pred             --h-hhhc-cc--cH-------HHHhccCCCcEEEEeCC
Q 042102          211 --E-ETQH-IV--NR-------QVINALGPKGVLINIGR  236 (317)
Q Consensus       211 --~-~t~~-li--~~-------~~l~~mk~gavlVN~~r  236 (317)
                        + ++|- ++  |.       +.+..-.|.+++|+++-
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN  118 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN  118 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence              1 1221 11  11       22334468999999864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.15  E-value=0.24  Score=46.93  Aligned_cols=65  Identities=14%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCC--CEEEEeCCCCCCC--CC-------ccc--c---CCHHHhcccCCEEEEec
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFD--CIIGYNSRTEKPN--LN-------YKY--Y---PNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~--~~-------~~~--~---~~l~el~~~aDvV~~~l  207 (317)
                      -++.++|+|+|. |.+|+.+|..+...+  .++..+|......  .+       ...  .   .+..+.++.||+|++++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            356779999999 999999999998544  4788888732111  01       111  1   12268899999998875


Q ss_pred             cC
Q 042102          208 SL  209 (317)
Q Consensus       208 p~  209 (317)
                      -.
T Consensus        85 G~   86 (321)
T PTZ00325         85 GV   86 (321)
T ss_pred             CC
Confidence            54

>PRK14851 hypothetical protein; Provisional

Probab=93.13  E-value=0.21  Score=51.94  Aligned_cols=36  Identities=17%  Similarity=0.153  Sum_probs=31.2

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ..|++++|+|+|+|.+|..+++.|...|. ++...|.
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~   75 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF   75 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence            46899999999999999999999999887 5666653

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.07  E-value=0.15  Score=47.76  Aligned_cols=60  Identities=15%  Similarity=0.154  Sum_probs=44.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc-------ccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK-------YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~-------~~~~l~el~~~aDvV~~~lp  208 (317)
                      ++|.|.| .|.+|+.+++.|...|++|.+..|+..+.     .+..       ...++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4789999 59999999999999999999888764321     1111       12346778999998887644

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=93.07  E-value=0.98  Score=42.15  Aligned_cols=106  Identities=16%  Similarity=0.157  Sum_probs=70.1

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCE-EEEeCCC--CCCCCCccccCCHHHhccc--CCEEEEeccCChhhhccccHHH
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCI-IGYNSRT--EKPNLNYKYYPNLIDLASN--CQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~--~~~~~~~~~~~~l~el~~~--aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      ..+|.|.|. |.+|+.+.+.|..+|++ |+..++.  .....+...+.++.++-..  .|+.++++|... +...+. +.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~-v~~~l~-e~   85 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPF-AADAIL-EA   85 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHH-HHHHHH-HH
Confidence            347888888 77999999999999885 3355665  3334566678899999887  899999999442 232332 22


Q ss_pred             HhccC-CCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102          222 INALG-PKGVLINIGRGLLVDEHELVSALLQGRLGGA  257 (317)
Q Consensus       222 l~~mk-~gavlVN~~rg~~vd~~aL~~al~~g~i~ga  257 (317)
                      .+ .. +.++++.-+-+ +-|++.|.+..+++.++-.
T Consensus        86 ~~-~gvk~avI~s~Gf~-~~~~~~l~~~a~~~girvl  120 (291)
T PRK05678         86 ID-AGIDLIVCITEGIP-VLDMLEVKAYLERKKTRLI  120 (291)
T ss_pred             HH-CCCCEEEEECCCCC-HHHHHHHHHHHHHcCCEEE
Confidence            22 22 23444444433 3344588888888887743

>PRK14852 hypothetical protein; Provisional

Probab=93.06  E-value=1.1  Score=48.15  Aligned_cols=160  Identities=11%  Similarity=0.091  Sum_probs=90.0

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCC------C-------CCC-------------------cc--
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEK------P-------NLN-------------------YK--  188 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~------~-------~~~-------------------~~--  188 (317)
                      ..|+.++|+|+|+|.+|..+++.|...|. ++...|...-      .       ..+                   ..  
T Consensus       328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~  407 (989)
T PRK14852        328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF  407 (989)
T ss_pred             HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence            35789999999999999999999999997 5665553210      0       000                   00  


Q ss_pred             ----ccCCHHHhcccCCEEEEeccCC-hhhhccccHHHHhccCCCcEEEEeCC------------CcccCHHHHHH----
Q 042102          189 ----YYPNLIDLASNCQILVVACSLT-EETQHIVNRQVINALGPKGVLINIGR------------GLLVDEHELVS----  247 (317)
Q Consensus       189 ----~~~~l~el~~~aDvV~~~lp~~-~~t~~li~~~~l~~mk~gavlVN~~r------------g~~vd~~aL~~----  247 (317)
                          ...+.+++++.+|+|+-++-.- -+.+..++..-   .+.|.-+|..+-            ++..+++ +++    
T Consensus       408 ~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c---~~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~-~f~~~~~  483 (989)
T PRK14852        408 PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA---LELGIPVITAGPLGYSCALLVFMPGGMNFDS-YFGIDDD  483 (989)
T ss_pred             ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH---HHcCCCEEEeeccccCeeEEEEcCCCCCHHH-hCCCCCC
Confidence                1135677889999999877542 12333333322   233333444432            1111111 000    


Q ss_pred             -HHHhCCceEEEeeCCCCCCCCCc-ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102          248 -ALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP  311 (317)
Q Consensus       248 -al~~g~i~ga~lDV~~~EP~~~~-~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  311 (317)
                       -..+|-++ ..+   ...|.+-. ..++..++-+.=+.+-++.-+..-.+..+.....+++-|+.
T Consensus       484 ~p~~~~~~~-~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~  545 (989)
T PRK14852        484 TPPMEGYLR-FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR  545 (989)
T ss_pred             CchHhhhhh-hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence             00111111 111   22232212 33455666565577777777788888899999999998873

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=93.06  E-value=0.17  Score=47.50  Aligned_cols=64  Identities=22%  Similarity=0.285  Sum_probs=46.4

Q ss_pred             CeEEEEecChhHH-HHHHHHhhCC--CE-EEEeCCCCCCC------CCc-cccCCHHHhccc--CCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGT-AIAKRAEAFD--CI-IGYNSRTEKPN------LNY-KYYPNLIDLASN--CQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~-~~a~~l~~~G--~~-V~~~~~~~~~~------~~~-~~~~~l~el~~~--aDvV~~~lp~~~~  212 (317)
                      .++||||+|.+++ ..+..++..+  +. |.++|+++...      .+. ..+.+++++++.  .|+|+++.|....
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H   80 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH   80 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence            5899999997774 5777887776  44 55778876532      122 356789999886  5899999997654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.06  E-value=0.2  Score=47.81  Aligned_cols=85  Identities=19%  Similarity=0.325  Sum_probs=58.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------Ccccc----C-C----HHHhc--ccCCEEEEeccC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------NYKYY----P-N----LIDLA--SNCQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~~~~----~-~----l~el~--~~aDvV~~~lp~  209 (317)
                      +.+|.|+|.|.||...+..++.+|+ +|++.|+++.+..      +....    . +    ..++-  ..+|+++-|.. 
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-  247 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-  247 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence            3399999999999999999999997 6778887664321      11111    1 1    11233  24899999987 


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ++.+    -...++..+++..++.+|-.
T Consensus       248 ~~~~----~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         248 SPPA----LDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CHHH----HHHHHHHhcCCCEEEEEecc
Confidence            3221    24667788999998888753

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.99  E-value=0.35  Score=45.50  Aligned_cols=85  Identities=18%  Similarity=0.162  Sum_probs=56.3

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCH-HHhcccCCEEEEeccCChhhhccccHH
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNL-IDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l-~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      .|.+|.|.|.|.+|...++.++.+|++|++.++++++.     .++....+. ++.-...|+++.+.... .   . -..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence            47899999999999999999999999988877765432     122111111 11112357666554432 1   1 245


Q ss_pred             HHhccCCCcEEEEeCC
Q 042102          221 VINALGPKGVLINIGR  236 (317)
Q Consensus       221 ~l~~mk~gavlVN~~r  236 (317)
                      .++.++++..++.+|.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            7788999999988874

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK08328 hypothetical protein; Provisional

Probab=92.91  E-value=0.12  Score=46.51  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=32.5

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46899999999999999999999999998 67777643

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.90  E-value=0.15  Score=50.83  Aligned_cols=109  Identities=13%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcccc--CCHHHhcccCCEEEEe--cc-CChhh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYY--PNLIDLASNCQILVVA--CS-LTEET  213 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~--~~l~el~~~aDvV~~~--lp-~~~~t  213 (317)
                      .+.+++|.|+|+|..|.++|+.|...|++|.++|+.....      .+....  ....+.+.++|+|+..  +| .++..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            5788999999999999999999999999999999753321      111111  1123445678988775  22 22321


Q ss_pred             -------hccccHHHHhc-------c-CCCcE-EEEeCCCcccCHHHHHHHHHhCC
Q 042102          214 -------QHIVNRQVINA-------L-GPKGV-LINIGRGLLVDEHELVSALLQGR  253 (317)
Q Consensus       214 -------~~li~~~~l~~-------m-k~gav-lVN~~rg~~vd~~aL~~al~~g~  253 (317)
                             ..++++-.+..       + ++..+ -|--+.|..--..-|.+.|+...
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence                   11233333321       1 12223 34445688777777777777543

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=92.82  E-value=0.21  Score=38.37  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=41.1

Q ss_pred             CeEEEEecChhHHHHHHHH-hhCCCEE-EEeCCCCCCC----CCccccCCHHHhccc--CCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRA-EAFDCII-GYNSRTEKPN----LNYKYYPNLIDLASN--CQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l-~~~G~~V-~~~~~~~~~~----~~~~~~~~l~el~~~--aDvV~~~lp~~~  211 (317)
                      .++.|+|+|+.|++++... ...|+++ .++|..++..    .+...+.+++++.+.  .|+-++++|...
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~   74 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEA   74 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHH
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHH
Confidence            4799999999999887544 3556643 4555544422    233334567777665  999999998543

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=92.80  E-value=0.27  Score=46.55  Aligned_cols=28  Identities=25%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             eEEEEecChhHHHHHHHHhhCC----CEEEEe
Q 042102          150 SVGILGMGRIGTAIAKRAEAFD----CIIGYN  177 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G----~~V~~~  177 (317)
                      +|||+|+|+||+.+.+.+...+    ++|...
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI   32 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL   32 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            5899999999999999987543    666544

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=92.76  E-value=0.34  Score=46.12  Aligned_cols=83  Identities=13%  Similarity=0.212  Sum_probs=51.5

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhh--CCC-EEEEeC-C-CCCCCCCc----cccCCHHHh-cccCCEEEEeccCChhhhc
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEA--FDC-IIGYNS-R-TEKPNLNY----KYYPNLIDL-ASNCQILVVACSLTEETQH  215 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~--~G~-~V~~~~-~-~~~~~~~~----~~~~~l~el-~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+.+|+|||. |.+|+.+.+.|..  +-. ++.... . +..+....    ....++++. ++++|++++++|...+   
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s---   79 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREAS---   79 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHH---
Confidence            4678999998 9999999999987  443 554442 2 21111111    111234443 3789999999985432   


Q ss_pred             cccHHHHhcc-CCCcEEEEeC
Q 042102          216 IVNRQVINAL-GPKGVLINIG  235 (317)
Q Consensus       216 li~~~~l~~m-k~gavlVN~~  235 (317)
                         .+....+ +.|..+||.|
T Consensus        80 ---~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         80 ---AAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             ---HHHHHHHHHCCCEEEECC
Confidence               2333322 5688899887

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=92.67  E-value=1  Score=42.94  Aligned_cols=61  Identities=5%  Similarity=-0.076  Sum_probs=45.0

Q ss_pred             c-cCCeEEEEecC-------hhHHHHHHHHhhCCCEEEEeCC-CCCCC--------------CC--ccccCCHHHhcccC
Q 042102          146 F-TGKSVGILGMG-------RIGTAIAKRAEAFDCIIGYNSR-TEKPN--------------LN--YKYYPNLIDLASNC  200 (317)
Q Consensus       146 l-~g~~vgIiG~G-------~iG~~~a~~l~~~G~~V~~~~~-~~~~~--------------~~--~~~~~~l~el~~~a  200 (317)
                      + .|+||+|+|.|       ++.++++..+..||++|.+..+ ..-..              .+  .....++++.++++
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a  245 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA  245 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            5 68999887654       6888888889999999988877 32110              01  22357899999999


Q ss_pred             CEEEEe
Q 042102          201 QILVVA  206 (317)
Q Consensus       201 DvV~~~  206 (317)
                      |+|..-
T Consensus       246 Dvvy~~  251 (335)
T PRK04523        246 DVVYAK  251 (335)
T ss_pred             CEEEec
Confidence            999764

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=92.66  E-value=0.65  Score=45.70  Aligned_cols=93  Identities=17%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             ccccCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCC-C-CccccCCHHH-hcccCCEEEEeccCC
Q 042102          144 TKFTGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPN-L-NYKYYPNLID-LASNCQILVVACSLT  210 (317)
Q Consensus       144 ~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-~~~~~~~l~e-l~~~aDvV~~~lp~~  210 (317)
                      ..+.|++|+|+|+          ..-+..+++.|...|.+|.+||+..... . .......+++ .+..||.|+++....
T Consensus       310 ~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h~  389 (425)
T PRK15182        310 INVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGHQ  389 (425)
T ss_pred             CCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCCH
Confidence            4578999999999          5678899999999999999999873221 1 0000111222 467899999998755


Q ss_pred             hhhhccccHHHHh-ccCCCcEEEEeCCCcc
Q 042102          211 EETQHIVNRQVIN-ALGPKGVLINIGRGLL  239 (317)
Q Consensus       211 ~~t~~li~~~~l~-~mk~gavlVN~~rg~~  239 (317)
                      + .+. ++-+.+. .||...++|+ +|+-+
T Consensus       390 ~-f~~-~~~~~~~~~~~~~~~iiD-~r~~~  416 (425)
T PRK15182        390 Q-FKQ-MGSEDIRGFGKDKHVLYD-LKYVL  416 (425)
T ss_pred             H-hhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence            4 222 4444443 4554568888 46554

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.66  E-value=0.22  Score=46.87  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=41.7

Q ss_pred             eEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC----------C------ccccCCHHHhcccCCEEEEecc
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL----------N------YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~----------~------~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      +|+|||.|.+|..+|..|...|.  ++..+|...+...          .      .....+-.+.++.||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            58999999999999998876665  6888887543211          0      0111223578999999999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05442 malate dehydrogenase; Provisional

Probab=92.65  E-value=1.1  Score=42.56  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=57.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCCCC--CCC---------------ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTEKP--NLN---------------YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~---------------~~~~~~l~el~~~aDvV  203 (317)
                      ++|+|||. |.+|..+|-.|...|.       ++..+|.....  ..+               .....+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            58999998 9999999988765443       68888864321  100               01123456889999999


Q ss_pred             EEeccCC--h-hhhc-cc--c----HH---HHhc-cCCCcEEEEeCCCcccCHHHH
Q 042102          204 VVACSLT--E-ETQH-IV--N----RQ---VINA-LGPKGVLINIGRGLLVDEHEL  245 (317)
Q Consensus       204 ~~~lp~~--~-~t~~-li--~----~~---~l~~-mk~gavlVN~~rg~~vd~~aL  245 (317)
                      +++.-..  + +++- ++  |    ++   .+.. .++.+++|.++  ..+|.-..
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~  138 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNAL  138 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHH
Confidence            8875421  1 1221 11  1    11   1222 33689999987  55655443

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.62  E-value=0.12  Score=45.27  Aligned_cols=37  Identities=14%  Similarity=0.218  Sum_probs=32.8

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      +.|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            56899999999999999999999999998 57777654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.47  E-value=0.18  Score=50.03  Aligned_cols=109  Identities=15%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CCcccc--CCHHHhcccCCEEEEecc--
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYY--PNLIDLASNCQILVVACS--  208 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~--~~l~el~~~aDvV~~~lp--  208 (317)
                      +..+.+++|.|+|.|.+|.++|+.|+..|++|.++|+.....          .+....  ... +....+|+|+++.-  
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR   89 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence            345789999999999999999999999999999998654211          111111  111 13456898888753  


Q ss_pred             -CChh-----hhc--cccH-HHH-hccCC---C-cEEEEeCCCcccCHHHHHHHHHhC
Q 042102          209 -LTEE-----TQH--IVNR-QVI-NALGP---K-GVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       209 -~~~~-----t~~--li~~-~~l-~~mk~---g-avlVN~~rg~~vd~~aL~~al~~g  252 (317)
                       .++.     ..+  ++++ +.+ ..+.+   . .+-|--+.|..--..-+.+.|+..
T Consensus        90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence             3332     111  2332 222 33422   1 233444568777766777777653

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=92.40  E-value=0.4  Score=45.43  Aligned_cols=94  Identities=10%  Similarity=0.127  Sum_probs=57.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCCCC--CCC---------------ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTEKP--NLN---------------YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~---------------~~~~~~l~el~~~aDvV  203 (317)
                      .+|+|||. |.+|+.+|-.|...|.       ++..+|.....  ..+               .....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999886664       68888874321  110               01113556889999999


Q ss_pred             EEeccCCh---hhhc-cc--cHH-------HHhccCC-CcEEEEeCCCcccCHHH
Q 042102          204 VVACSLTE---ETQH-IV--NRQ-------VINALGP-KGVLINIGRGLLVDEHE  244 (317)
Q Consensus       204 ~~~lp~~~---~t~~-li--~~~-------~l~~mk~-gavlVN~~rg~~vd~~a  244 (317)
                      +++.-...   +|+- ++  |.+       .+....| .++++.++  ..+|.-.
T Consensus        84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            98754321   1221 11  111       2233344 88999886  5555443

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=92.39  E-value=0.64  Score=43.26  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=32.6

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|...+|.|+|+|.+|.++|+.|...|. ++..+|..
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d   52 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK   52 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            46889999999999999999999999998 57777754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.38  E-value=0.5  Score=44.32  Aligned_cols=85  Identities=24%  Similarity=0.363  Sum_probs=54.9

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc---cC--C-HHHhcccCCEEEEeccCChhhhc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY---YP--N-LIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~---~~--~-l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .|.++.|.|.|.+|+.+++.++++|++|++.+++....     .+...   ..  + ..+.-...|+++-+.+...    
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~----  244 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH----  244 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence            46799999999999999999999999998887654321     01110   00  0 1122345677776665321    


Q ss_pred             cccHHHHhccCCCcEEEEeCC
Q 042102          216 IVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~r  236 (317)
                       .....++.+++++.+++++.
T Consensus       245 -~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         245 -DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             -hHHHHHHHhcCCCEEEEEec
Confidence             12455677777777777764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=92.28  E-value=0.56  Score=44.10  Aligned_cols=75  Identities=16%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             eEEEEec-ChhHHHHHHHHhhCC-CEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc-cC
Q 042102          150 SVGILGM-GRIGTAIAKRAEAFD-CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA-LG  226 (317)
Q Consensus       150 ~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~-mk  226 (317)
                      +|+|+|. |-.|.++.++|..-- +++........     ....+.+++++++|++++++|...+ .     +.... .+
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----~~~~~~~~~~~~~D~vFlalp~~~s-~-----~~~~~~~~   71 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----KDAAERAKLLNAADVAILCLPDDAA-R-----EAVSLVDN   71 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----cCcCCHhHhhcCCCEEEECCCHHHH-H-----HHHHHHHh
Confidence            7899985 889999999998654 45554432211     1122456777899999999995533 2     22222 24


Q ss_pred             CCcEEEEeC
Q 042102          227 PKGVLINIG  235 (317)
Q Consensus       227 ~gavlVN~~  235 (317)
                      .|..+||.|
T Consensus        72 ~g~~VIDlS   80 (310)
T TIGR01851        72 PNTCIIDAS   80 (310)
T ss_pred             CCCEEEECC
Confidence            678888887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=92.27  E-value=0.41  Score=44.39  Aligned_cols=62  Identities=16%  Similarity=0.146  Sum_probs=44.1

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC---------C----Ccc-------ccCCHHHhcccCCEEEE
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN---------L----NYK-------YYPNLIDLASNCQILVV  205 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~----~~~-------~~~~l~el~~~aDvV~~  205 (317)
                      .|++|.|.| .|-||+.+++.|...|.+|.+..++....         .    ...       ....++++++.+|+|+-
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            368999999 69999999999999999998766543210         0    000       12346677888998776


Q ss_pred             ecc
Q 042102          206 ACS  208 (317)
Q Consensus       206 ~lp  208 (317)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            653

>PRK10206 putative oxidoreductase; Provisional

Probab=92.25  E-value=0.27  Score=46.87  Aligned_cols=64  Identities=14%  Similarity=0.253  Sum_probs=42.6

Q ss_pred             CeEEEEecChhHHH-HHHHH-hh-CCCEEE-EeCCCCCCC-----C-CccccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTA-IAKRA-EA-FDCIIG-YNSRTEKPN-----L-NYKYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l-~~-~G~~V~-~~~~~~~~~-----~-~~~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .++||||+|.+++. .+..+ .. -+++|. ++|++++..     . ....+.+++++++  +.|+|++++|....
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H   77 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   77 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            37999999998763 34444 32 357764 678765322     1 1234578999996  57999999997543

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.24  E-value=0.27  Score=47.44  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=32.9

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 68777764

>PRK07877 hypothetical protein; Provisional

Probab=92.23  E-value=0.3  Score=51.09  Aligned_cols=79  Identities=14%  Similarity=0.230  Sum_probs=54.9

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCC------CC------CC-----------------c--c--
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEK------PN------LN-----------------Y--K--  188 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~------~~------~~-----------------~--~--  188 (317)
                      ..|++++|+|+|+| +|+.+|..|...|.  ++...|...-      ..      .+                 .  .  
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999 99999999998884  6666653210      00      00                 0  0  


Q ss_pred             ----ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102          189 ----YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA  224 (317)
Q Consensus       189 ----~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~  224 (317)
                          ...+++++++.+|+|+-|+- +-+++.++++.-.+.
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence                01357788999998888776 456788888665543

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.20  E-value=0.64  Score=44.44  Aligned_cols=82  Identities=16%  Similarity=0.255  Sum_probs=50.1

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhh-CCCE---EEEe-CC-CCCCCCCc-----c-ccCCHHHhcccCCEEEEeccCChhh
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEA-FDCI---IGYN-SR-TEKPNLNY-----K-YYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~-~G~~---V~~~-~~-~~~~~~~~-----~-~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      ++.+|||||. |..|+.+.+.|.. -.+.   +..+ +. +..+....     . ...+.++ ++++|++++++|...  
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~~--   80 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGEV--   80 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChHH--
Confidence            3468999998 9999999999984 4444   4333 22 22111111     0 1123333 478999999998542  


Q ss_pred             hccccHHHHhc-cCCCcEEEEeC
Q 042102          214 QHIVNRQVINA-LGPKGVLINIG  235 (317)
Q Consensus       214 ~~li~~~~l~~-mk~gavlVN~~  235 (317)
                          .++.... .+.|+++||.|
T Consensus        81 ----s~~~~~~~~~~G~~VID~S   99 (347)
T PRK06728         81 ----SRQFVNQAVSSGAIVIDNT   99 (347)
T ss_pred             ----HHHHHHHHHHCCCEEEECc
Confidence                2333322 35688899887

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.18  E-value=0.18  Score=51.14  Aligned_cols=36  Identities=11%  Similarity=0.182  Sum_probs=31.8

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      -.|+++.|.|. |.||+.+++.|...|++|.+..|+.
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~  114 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA  114 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            46889999997 9999999999999999998887754

>PLN02214 cinnamoyl-CoA reductase

Probab=92.14  E-value=0.39  Score=45.51  Aligned_cols=64  Identities=20%  Similarity=0.176  Sum_probs=46.4

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC------------CCcc-------ccCCHHHhcccCCEEE
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN------------LNYK-------YYPNLIDLASNCQILV  204 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~~~-------~~~~l~el~~~aDvV~  204 (317)
                      .+.+++|.|.|. |.||+.+++.|...|.+|.+..|+....            ....       ...++.++++.+|+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            367889999998 9999999999999999998877654310            0011       1234567788899877


Q ss_pred             Eecc
Q 042102          205 VACS  208 (317)
Q Consensus       205 ~~lp  208 (317)
                      -+..
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            6654

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.09  E-value=0.16  Score=44.54  Aligned_cols=37  Identities=27%  Similarity=0.314  Sum_probs=32.3

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      +.|++.+|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46889999999999999999999999998 57777653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08374 homoserine dehydrogenase; Provisional

Probab=92.03  E-value=1  Score=42.80  Aligned_cols=102  Identities=14%  Similarity=0.184  Sum_probs=59.2

Q ss_pred             CeEEEEecChhHHHHHHHHhh--------CC--CEEEE-eCCCCCC--CCCc---------------c-c-------cCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEA--------FD--CIIGY-NSRTEKP--NLNY---------------K-Y-------YPN  192 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~--------~G--~~V~~-~~~~~~~--~~~~---------------~-~-------~~~  192 (317)
                      .+|+|+|+|++|+.+++.+..        +|  .+|.+ .+++...  ..+.               . +       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            489999999999999998865        56  56543 3432110  0000               0 0       115


Q ss_pred             HHHhc--ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102          193 LIDLA--SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG  255 (317)
Q Consensus       193 l~el~--~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~  255 (317)
                      +++++  ..+|+|+-+.+.. ...    .-..+.++.|.-+|-..-|.+. ..+.|.+..++....
T Consensus        83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~  143 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP  143 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence            66776  5799998776432 122    2233445667666655555443 555666666555544

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=92.01  E-value=0.74  Score=44.30  Aligned_cols=34  Identities=32%  Similarity=0.557  Sum_probs=30.6

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      .|.+|.|.|.|.+|..+++.++.+|++|++.+++
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~  211 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS  211 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5889999999999999999999999998877654

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=91.98  E-value=0.3  Score=46.28  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=31.5

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      +++++|.|.|. |-||+.+++.|...|.+|+++++.
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~   48 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF   48 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56789999995 999999999999999999988864

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=91.89  E-value=0.15  Score=45.24  Aligned_cols=60  Identities=10%  Similarity=0.126  Sum_probs=45.4

Q ss_pred             EEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-------CCcc-------ccCCHHHhcccCCEEEEeccCC
Q 042102          151 VGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-------LNYK-------YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       151 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~~-------~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      |.|+|. |.+|+.+++.|..-+++|.+.-|.....       .+..       ...++.++++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678896 9999999999999999998877765321       1111       1235777899999999999954

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=91.84  E-value=0.37  Score=44.05  Aligned_cols=61  Identities=13%  Similarity=0.088  Sum_probs=44.0

Q ss_pred             eEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--C-------ccccCCHHHhc------cc-CCEEEEeccCC
Q 042102          150 SVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--N-------YKYYPNLIDLA------SN-CQILVVACSLT  210 (317)
Q Consensus       150 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~-------~~~~~~l~el~------~~-aDvV~~~lp~~  210 (317)
                      +|.|.|. |.+|+.+++.|...|++|.+..|++....  +       .....++.+++      .. +|.|+++.|..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~   78 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence            4678887 99999999999999999998888764321  1       11123455666      45 89998887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=91.80  E-value=0.43  Score=48.03  Aligned_cols=134  Identities=20%  Similarity=0.191  Sum_probs=87.7

Q ss_pred             ccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          144 TKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      -.+.|++..++|-..| |..++..|+....+|..+-.         ...++.|.+.++|+|+.++--.    +++-.+  
T Consensus       158 v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHS---------KT~~lae~v~~ADIvIvAiG~P----efVKgd--  222 (935)
T KOG4230|consen  158 VFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHS---------KTRNLAEKVSRADIVIVAIGQP----EFVKGD--  222 (935)
T ss_pred             CccccceeEEEecccccCChHHHHHHhcCceEEEecC---------CCccHHHHhccCCEEEEEcCCc----ceeecc--
Confidence            4588999999998865 89999999999999887642         1347889999999999998733    344443  


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHH
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGN  302 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~n  302 (317)
                       .+|||+++|++|--.+-|.     .-++|.-  ..-||...+-.   ..    --.+||-=||...-...-+.+.+++.
T Consensus       223 -WiKpGavVIDvGINyvpD~-----~Kksg~k--lvGDVdfe~Ak---ev----as~ITPVPGGVGPMTVAMLmqNtvea  287 (935)
T KOG4230|consen  223 -WIKPGAVVIDVGINYVPDP-----SKKSGFK--LVGDVDFESAK---EV----ASFITPVPGGVGPMTVAMLMQNTVEA  287 (935)
T ss_pred             -cccCCcEEEEccccccCCC-----CCcccce--EeeecchHhhh---hh----hhccccCCCCcchHHHHHHHHHHHHH
Confidence             3699999999987666553     1223332  24566443321   00    12578877776655444444444444


Q ss_pred             HHHHH
Q 042102          303 LQAHF  307 (317)
Q Consensus       303 l~~~~  307 (317)
                      -.+++
T Consensus       288 AKR~r  292 (935)
T KOG4230|consen  288 AKRQR  292 (935)
T ss_pred             HHHHH
Confidence            44444

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=91.74  E-value=0.45  Score=45.08  Aligned_cols=93  Identities=9%  Similarity=0.106  Sum_probs=57.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCC-------CEEEEeCCCCCC--CCC----cc-----------ccCCHHHhcccCCEE
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFD-------CIIGYNSRTEKP--NLN----YK-----------YYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G-------~~V~~~~~~~~~--~~~----~~-----------~~~~l~el~~~aDvV  203 (317)
                      .+|+|+|. |.+|+.++..|...+       .+|..+|+....  ..+    ..           ...++.+.++.||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            37999999 999999999997644       478888874421  111    00           124567889999998


Q ss_pred             EEeccCCh---hhh-ccc--cH-------HHHhcc-CCCcEEEEeCCCcccCHH
Q 042102          204 VVACSLTE---ETQ-HIV--NR-------QVINAL-GPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       204 ~~~lp~~~---~t~-~li--~~-------~~l~~m-k~gavlVN~~rg~~vd~~  243 (317)
                      +.+.-...   .++ .++  |.       ..+... ++++++|.++  ..+|.-
T Consensus        83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~  134 (325)
T cd01336          83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTN  134 (325)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHH
Confidence            87744321   111 111  11       123334 5788888887  355443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=91.70  E-value=0.87  Score=45.90  Aligned_cols=91  Identities=8%  Similarity=0.049  Sum_probs=64.3

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhCC-CEEEEeCCCCCC-C---------CC--ccccCCHHHhcccCCEE--EE-
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAFD-CIIGYNSRTEKP-N---------LN--YKYYPNLIDLASNCQIL--VV-  205 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G-~~V~~~~~~~~~-~---------~~--~~~~~~l~el~~~aDvV--~~-  205 (317)
                      .+.|++|+++|=   |++.++.+..+..|| ++|.+..+..-. .         .+  .....++++.++++|+.  .. 
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~  250 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF  250 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence            478999999998   588999999999998 899887764321 1         01  22357899999999952  22 


Q ss_pred             ------eccCC-----hh--hhccccHHHHhccCCCcEEEEeC
Q 042102          206 ------ACSLT-----EE--TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       206 ------~lp~~-----~~--t~~li~~~~l~~mk~gavlVN~~  235 (317)
                            .....     ..  -...++++.++.+|++++|.-+.
T Consensus       251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence                  12111     01  12356899999999999998875

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=91.67  E-value=0.48  Score=45.04  Aligned_cols=83  Identities=14%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCC---EEEEeCCCCC--CCCCc----cccCCHH-HhcccCCEEEEeccCChhhhcc
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDC---IIGYNSRTEK--PNLNY----KYYPNLI-DLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~~~~~~--~~~~~----~~~~~l~-el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      +++|+|+|. |.+|+.+++.|..-|+   ++.+..+...  .....    ....+++ +.++.+|+|++++|....    
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s----   76 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS----   76 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH----
Confidence            468999995 8999999999988554   4444433221  11110    0111111 334789999999885432    


Q ss_pred             ccHHHHhc-cCCCcEEEEeCC
Q 042102          217 VNRQVINA-LGPKGVLINIGR  236 (317)
Q Consensus       217 i~~~~l~~-mk~gavlVN~~r  236 (317)
                        ++..+. ++.|+++|+.|.
T Consensus        77 --~~~~~~~~~~G~~VIDlS~   95 (334)
T PRK14874         77 --KKYAPKAAAAGAVVIDNSS   95 (334)
T ss_pred             --HHHHHHHHhCCCEEEECCc
Confidence              222222 357889998773

>PRK12937 short chain dehydrogenase; Provisional

Probab=91.65  E-value=0.64  Score=41.04  Aligned_cols=34  Identities=29%  Similarity=0.333  Sum_probs=29.8

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCC
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSR  179 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~  179 (317)
                      +.++++.|.|. |.||+.+|+.+...|++|+...+
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~   37 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA   37 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence            67899999995 99999999999999999876554

>PRK06523 short chain dehydrogenase; Provisional

Probab=91.64  E-value=1  Score=40.33  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=34.1

Q ss_pred             ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      ..+.|+++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            4588999999996 79999999999999999998887643

>PRK10537 voltage-gated potassium channel; Provisional

Probab=91.62  E-value=0.4  Score=46.67  Aligned_cols=83  Identities=5%  Similarity=-0.050  Sum_probs=50.2

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---CCcc----ccCC---HHHh-cccCCEEEEeccCChhhhcc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---LNYK----YYPN---LIDL-ASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~----~~~~---l~el-~~~aDvV~~~lp~~~~t~~l  216 (317)
                      ..++-|+|+|.+|+.+++.|+..|.++.+.+......   .+..    ...+   ++++ +++|+.|+++.+.++++..+
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i  319 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV  319 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence            5689999999999999999999898877666432111   1110    0112   2222 66788888777766554432


Q ss_pred             ccHHHHhccCCCcEEE
Q 042102          217 VNRQVINALGPKGVLI  232 (317)
Q Consensus       217 i~~~~l~~mk~gavlV  232 (317)
                        ....+.+.|+..+|
T Consensus       320 --vL~ar~l~p~~kII  333 (393)
T PRK10537        320 --VLAAKEMSSDVKTV  333 (393)
T ss_pred             --HHHHHHhCCCCcEE
Confidence              23344555544433

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.59  E-value=0.19  Score=47.09  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=34.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  183 (317)
                      .|.|++|+|+|.+|.++++-+++.|+ ++++.|.++++
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence            68999999999999999999999998 89999987654

>PRK06153 hypothetical protein; Provisional

Probab=91.59  E-value=0.19  Score=48.54  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ..|++++|+|||+|.+|..++..|...|. ++..+|.
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~  208 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG  208 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence            36899999999999999999999999997 6777764

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=91.58  E-value=0.81  Score=43.73  Aligned_cols=83  Identities=16%  Similarity=0.249  Sum_probs=49.8

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCC---EEEEe--CCCCCCCCCc--c--ccCCH-HHhcccCCEEEEeccCChhhhc
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDC---IIGYN--SRTEKPNLNY--K--YYPNL-IDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~--~~~~~~~~~~--~--~~~~l-~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      ...+|+|+|. |.+|+.+.+.|...++   ++.+.  .++..+....  .  ...++ .+.+..+|+|++++|...+   
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s---   82 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSIS---   82 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHH---
Confidence            3568999995 8999999999987554   34322  2332221111  0  11111 2345889999999985532   


Q ss_pred             cccHHHHhc-cCCCcEEEEeC
Q 042102          216 IVNRQVINA-LGPKGVLINIG  235 (317)
Q Consensus       216 li~~~~l~~-mk~gavlVN~~  235 (317)
                         ++.... .+.|+.+||.|
T Consensus        83 ---~~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         83 ---KKFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             ---HHHHHHHHhCCCEEEECC
Confidence               222222 25688899987

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=91.56  E-value=0.62  Score=42.08  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC-----CC-ccccCCHH-Hh--cccCCEEEEeccCChhhhcc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN-----LN-YKYYPNLI-DL--ASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~-----~~-~~~~~~l~-el--~~~aDvV~~~lp~~~~t~~l  216 (317)
                      .|.++.|.|.|.+|+.+++.++.+|.+ |++.+++....     .+ ........ ..  -...|+++.++....     
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-----  171 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS-----  171 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence            578999999999999999999999998 88877653321     11 01000011 11  134787777655322     


Q ss_pred             ccHHHHhccCCCcEEEEeCCC
Q 042102          217 VNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg  237 (317)
                      .-...++.++++..+++++-.
T Consensus       172 ~~~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         172 ALETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             HHHHHHHHhcCCcEEEEEecc
Confidence            124567889999999998754

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=91.46  E-value=0.71  Score=42.94  Aligned_cols=64  Identities=20%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             CeEEEEecChhHHHHHHHHhh-CCCEEE-EeCCCCCCC-------CCcc-ccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEA-FDCIIG-YNSRTEKPN-------LNYK-YYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------~~~~-~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||.|.||+..+..+.. -++++. +++++++..       .+.. ...+.+++++  +.|+|+.+.|....
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H   77 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH   77 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence            479999999999988666653 356664 566554321       1222 2457888875  57889999986543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=91.46  E-value=1.3  Score=43.85  Aligned_cols=101  Identities=10%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhC-------CC--EEEEeCCCCCCCCC---------------ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAF-------DC--IIGYNSRTEKPNLN---------------YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~-------G~--~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDvV  203 (317)
                      .+|+|||. |.+|..+|-.|...       |.  ++..+|...+...+               .....+-.+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            48999999 99999999988755       44  67788876554211               11123456889999999


Q ss_pred             EEeccCC--h-hhh--------cccc--HHHHhc-cCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          204 VVACSLT--E-ETQ--------HIVN--RQVINA-LGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       204 ~~~lp~~--~-~t~--------~li~--~~~l~~-mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      ++..-..  + .++        .++.  ...+.. -.+++++|.++  ..+|.-..+-.-.+
T Consensus       181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s  240 (444)
T PLN00112        181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA  240 (444)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence            9975431  1 111        1111  122334 46789999886  66666655543333

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=91.39  E-value=0.82  Score=42.44  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=55.9

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc---ccC--C-HHHhcccCCEEEEeccCChhhhc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK---YYP--N-LIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~---~~~--~-l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .|.+|.|+|.|.+|+.+++.++.+|.+|++.+++....     .+..   ...  + ........|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            46799999999999999999999999998887654321     0110   000  1 1111235788776654221    


Q ss_pred             cccHHHHhccCCCcEEEEeCC
Q 042102          216 IVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~r  236 (317)
                       ...+.+..|+++..+|+++.
T Consensus       238 -~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             -HHHHHHHhcccCCEEEEECC
Confidence             23556788899999998864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=91.39  E-value=0.52  Score=44.83  Aligned_cols=85  Identities=22%  Similarity=0.294  Sum_probs=56.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcc---ccC---CHHHhcccCCEEEEeccCChhhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYK---YYP---NLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~---~~~---~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .|.++.|.|.|.+|+.+++.++..|.+|++.+++.+..      .+..   ...   .+.++....|+++-++.....  
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~--  257 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP--  257 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence            57899999999999999999999999887766543211      1111   011   122333456888877653221  


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                         -...++.++++..++.+|.
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ---HHHHHHHhccCCEEEEECC
Confidence               1345677889999988874

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=91.38  E-value=0.47  Score=41.26  Aligned_cols=62  Identities=16%  Similarity=0.120  Sum_probs=46.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCC---c-------cccCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLN---Y-------KYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~-------~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|||. |.+|+.+++-++..|..|+.+-|++.+...   .       ....++.+.+..-|+|+.+....
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            58999996 999999999999999999988777654311   1       11234557889999999876543

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=91.35  E-value=0.38  Score=43.44  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      ++.||++.|.|.   +.||+++|+.+...|++|....+.
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            367999999997   489999999999999998766543

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=91.34  E-value=0.53  Score=51.00  Aligned_cols=65  Identities=25%  Similarity=0.275  Sum_probs=52.5

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC--------------------------CCc--------cccC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN--------------------------LNY--------KYYP  191 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------------------~~~--------~~~~  191 (317)
                      =.|++|+|||-|..|-+.|..|...|..|.+|.|+....                          .+.        ....
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence            479999999999999999999999999999998875431                          011        1236


Q ss_pred             CHHHhcccCCEEEEeccCC
Q 042102          192 NLIDLASNCQILVVACSLT  210 (317)
Q Consensus       192 ~l~el~~~aDvV~~~lp~~  210 (317)
                      +++++.++-|.|+++.-.|
T Consensus      1863 s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             cHHHHhhccCeEEEEeCCC
Confidence            8999999999999986544

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=91.34  E-value=0.34  Score=46.97  Aligned_cols=39  Identities=15%  Similarity=0.177  Sum_probs=33.9

Q ss_pred             cccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          143 TTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +....+++|.|.|. |.||+.+++.|...|.+|....|+.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            34567889999997 9999999999999999998888764

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=91.33  E-value=0.53  Score=44.05  Aligned_cols=83  Identities=16%  Similarity=0.175  Sum_probs=52.8

Q ss_pred             EEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC---------------ccccCCHHHhcccCCEEEEeccCC--h-h
Q 042102          153 ILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN---------------YKYYPNLIDLASNCQILVVACSLT--E-E  212 (317)
Q Consensus       153 IiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDvV~~~lp~~--~-~  212 (317)
                      |||.|.+|..+|-.|...+.  ++..+|.......+               .....+-.+.++.||+|+++.-..  + .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            68999999999999987675  68888876543210               111223457899999999975431  1 1


Q ss_pred             hh--------cccc--HHHHhccCCCcEEEEeC
Q 042102          213 TQ--------HIVN--RQVINALGPKGVLINIG  235 (317)
Q Consensus       213 t~--------~li~--~~~l~~mk~gavlVN~~  235 (317)
                      ++        .++.  .+.+....|.+++++++
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  113 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT  113 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            11        1111  12333457889999986

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=91.27  E-value=0.6  Score=43.49  Aligned_cols=62  Identities=21%  Similarity=0.145  Sum_probs=43.5

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-------------CCc-------cccCCHHHhcccCCEEEE
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-------------LNY-------KYYPNLIDLASNCQILVV  205 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~~~-------~~~~~l~el~~~aDvV~~  205 (317)
                      .||++.|.|. |.||+.+++.|...|++|.+..++....             ...       ....+++++++.+|+|+.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            3789999995 9999999999999999987765543210             001       112346677888998877


Q ss_pred             ecc
Q 042102          206 ACS  208 (317)
Q Consensus       206 ~lp  208 (317)
                      +..
T Consensus        84 ~A~   86 (325)
T PLN02989         84 TAS   86 (325)
T ss_pred             eCC
Confidence            654

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.20  E-value=0.84  Score=41.16  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=32.5

Q ss_pred             cccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.||++.|.|.+   .||+++|+.+...|++|+..+++.
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            4789999999986   799999999999999998877754

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=91.15  E-value=0.26  Score=44.44  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=31.4

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|.
T Consensus         7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~   43 (231)
T cd00755           7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF   43 (231)
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            35788999999999999999999998897 6777764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=91.14  E-value=0.39  Score=46.01  Aligned_cols=57  Identities=18%  Similarity=0.183  Sum_probs=40.9

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Cc---cccCC---HHHhcc--cCCEEEEe
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NY---KYYPN---LIDLAS--NCQILVVA  206 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~---~~~~~---l~el~~--~aDvV~~~  206 (317)
                      +|+|||.|..|..+++.++.+|++|++++..+....    ..   ....+   +.++++  ++|.|+..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~   69 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE   69 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence            589999999999999999999999999887654321    00   01233   444555  58887653

This enzyme is an alternative to PurN (TIGR00639)

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.14  E-value=0.66  Score=43.44  Aligned_cols=86  Identities=20%  Similarity=0.295  Sum_probs=55.2

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC-----CCccc---c--CCH---HHhcc--cCCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN-----LNYKY---Y--PNL---IDLAS--NCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~-----~~~~~---~--~~l---~el~~--~aDvV~~~lp~~  210 (317)
                      .|.+|.|+|.|.+|..+++.++.+|++ |++.+++....     .+...   .  .+.   .++..  ..|+|+-+....
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            488999999999999999999999998 88887654321     11110   0  011   12222  467777665422


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      .     .....++.+++++.++.++..
T Consensus       243 ~-----~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         243 A-----ARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             H-----HHHHHHHHhhcCCEEEEEcCC
Confidence            1     113456778888888877653

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=91.07  E-value=0.44  Score=45.74  Aligned_cols=61  Identities=16%  Similarity=0.137  Sum_probs=42.9

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-C----Ccc-------ccCCHHHhcccCCEEEEec
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-L----NYK-------YYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~----~~~-------~~~~l~el~~~aDvV~~~l  207 (317)
                      .+++|.|.|. |-||+.+++.|...|.+|.+.++..... .    ...       ....+..+++++|+|+-+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            5689999998 9999999999999999999888643211 0    001       0112345567899877654

>PRK05884 short chain dehydrogenase; Provisional

Probab=91.06  E-value=0.51  Score=41.68  Aligned_cols=32  Identities=16%  Similarity=0.095  Sum_probs=27.9

Q ss_pred             eEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          150 SVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       150 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ++.|.|. |.||+.+++.+...|++|...+|+.
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~   34 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARR   34 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5778886 8999999999999999999888764

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=91.04  E-value=0.88  Score=43.49  Aligned_cols=80  Identities=14%  Similarity=0.170  Sum_probs=48.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCC-CEEEEeCCCC-CCC--CC----c-------------cc-cCCHHHhcccCCEEEE
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFD-CIIGYNSRTE-KPN--LN----Y-------------KY-YPNLIDLASNCQILVV  205 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~-~~~--~~----~-------------~~-~~~l~el~~~aDvV~~  205 (317)
                      .+|+|+| .|.+|+.+++.|.... +++.++.++. ...  ..    .             .. ..+.++ +.++|+|+.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence            6899998 8999999999998765 4776652221 111  00    0             00 113333 478999999


Q ss_pred             eccCChhhhccccHHHHhcc-CCCcEEEEeC
Q 042102          206 ACSLTEETQHIVNRQVINAL-GPKGVLINIG  235 (317)
Q Consensus       206 ~lp~~~~t~~li~~~~l~~m-k~gavlVN~~  235 (317)
                      ++|....      .+..+.+ +.|..+|+.+
T Consensus        83 a~p~~~s------~~~~~~~~~~G~~vIDls  107 (349)
T PRK08664         83 ALPSDVA------GEVEEEFAKAGKPVFSNA  107 (349)
T ss_pred             eCChhHH------HHHHHHHHHCCCEEEECC
Confidence            9996533      2222322 4567677765

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=91.01  E-value=0.89  Score=44.79  Aligned_cols=31  Identities=23%  Similarity=0.288  Sum_probs=27.1

Q ss_pred             eEEEEecChhHHHHHHHHhhCCC------EEEEeCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDC------IIGYNSRT  180 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~------~V~~~~~~  180 (317)
                      +|.|||+|.+|.++++.|...|.      ++.++|..
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D   37 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMD   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCC
Confidence            58999999999999999998887      78887754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=90.94  E-value=0.66  Score=45.08  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=50.3

Q ss_pred             cCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--CccccCCHHHhcccCCEEEEecc
Q 042102          147 TGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--NYKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .|++|+|+|+          ..-...+++.|...|++|.+||+......  +.....++.++++.||.|++..-
T Consensus       295 ~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (388)
T PRK15057        295 KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNRM  368 (388)
T ss_pred             cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcCC
Confidence            6899999999          34577899999999999999998743322  34456889999999999988754

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.90  E-value=0.61  Score=41.91  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             cccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCCC
Q 042102          145 KFTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       145 ~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      .+.||++.|.|.+   .||+++|+.|...|++|+..+|+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            3789999999986   89999999999999999887765

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.86  E-value=0.34  Score=43.73  Aligned_cols=37  Identities=16%  Similarity=0.202  Sum_probs=32.6

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.||++.|.|.   +.||.++|+.|...|++|+..+++.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            478999999996   7999999999999999998887653

>PRK08324 short chain dehydrogenase; Validated

Probab=90.84  E-value=0.38  Score=50.18  Aligned_cols=39  Identities=31%  Similarity=0.361  Sum_probs=34.4

Q ss_pred             ccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          144 TKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      ..+.|+++.|.| .|.||+.+++.|...|++|+..+++..
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            457899999999 599999999999999999999887653

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=90.79  E-value=0.39  Score=44.39  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=43.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc-------ccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK-------YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDvV~~~lp  208 (317)
                      +++.|.|. |.||+.+++.|...|.+|.+.+++.....     +..       ...++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            47889985 99999999999999999998887654321     111       11245677888998877654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=90.77  E-value=0.77  Score=43.74  Aligned_cols=80  Identities=11%  Similarity=0.159  Sum_probs=48.0

Q ss_pred             eEEEEe-cChhHHHHHHHHhhCCCE---EEEeCCCCCCC--C---Ccc-cc--CCHHHhcccCCEEEEeccCChhhhccc
Q 042102          150 SVGILG-MGRIGTAIAKRAEAFDCI---IGYNSRTEKPN--L---NYK-YY--PNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       150 ~vgIiG-~G~iG~~~a~~l~~~G~~---V~~~~~~~~~~--~---~~~-~~--~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      +|+|+| -|.+|+.+++.|...++.   +.++.+.....  .   +.. ..  .+. +.++++|+++.++|.....+ + 
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~s~~-~-   77 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSVSKE-F-   77 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHHHHH-H-
Confidence            589999 899999999999885553   33333322211  1   100 11  122 34588999999998553322 1 


Q ss_pred             cHHHHhccCCCcEEEEeC
Q 042102          218 NRQVINALGPKGVLINIG  235 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~  235 (317)
                      -+..   .+.|+++|+.+
T Consensus        78 a~~~---~~~G~~VID~s   92 (339)
T TIGR01296        78 APKA---AKCGAIVIDNT   92 (339)
T ss_pred             HHHH---HHCCCEEEECC
Confidence            1222   35678888776

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.74  E-value=0.4  Score=47.05  Aligned_cols=105  Identities=15%  Similarity=0.045  Sum_probs=62.1

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------Ccccc--CCHHHhcccCCEEEEeccCChhhh---
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------NYKYY--PNLIDLASNCQILVVACSLTEETQ---  214 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~--~~l~el~~~aDvV~~~lp~~~~t~---  214 (317)
                      +.++++.|+|+|..|.+.++.|+..|.+|.++|.......      +....  ....+.++..|+|+.. |.-+...   
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~~   82 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPSL   82 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHHH
Confidence            5678999999999999999999999999999996433210      11111  1122345678866554 3222111   


Q ss_pred             ------c--cccH-HHHhc-cCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          215 ------H--IVNR-QVINA-LGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       215 ------~--li~~-~~l~~-mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                            +  ++.+ +.+.. ++...+-|--+.|..--..-|.+.|+.
T Consensus        83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence                  1  2232 33333 222233344456877777777777764

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=90.71  E-value=0.54  Score=44.91  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=55.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc---c--CCHH----Hhcc-cCCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY---Y--PNLI----DLAS-NCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~---~--~~l~----el~~-~aDvV~~~lp~~  210 (317)
                      .|.+|.|.|.|.+|..+++.++..|+ +|++.++++.+.     .++..   .  .++.    ++.. ..|+++-+....
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            47899999999999999999999999 688887654321     11110   1  1111    1111 368887776432


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      + +    -...++.++++..+|.++-
T Consensus       271 ~-~----~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 P-A----LETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             H-H----HHHHHHHHhcCCEEEEEcc
Confidence            2 1    1345677888888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=90.67  E-value=0.45  Score=43.32  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=41.4

Q ss_pred             eEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccC--CEEEEeccC
Q 042102          150 SVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNC--QILVVACSL  209 (317)
Q Consensus       150 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~a--DvV~~~lp~  209 (317)
                      +|.|+|. |.||+.+++.|...|.+|.+.+|...   +.....++.++++.+  |+|+.+...
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCcc
Confidence            4788895 99999999999999999998887521   122233466667665  988776543

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02427 UDP-apiose/xylose synthase

Probab=90.57  E-value=0.48  Score=45.49  Aligned_cols=65  Identities=9%  Similarity=0.049  Sum_probs=45.5

Q ss_pred             cccccCCeEEEEec-ChhHHHHHHHHhhC-CCEEEEeCCCCCCC-----C-------Ccc-------ccCCHHHhcccCC
Q 042102          143 TTKFTGKSVGILGM-GRIGTAIAKRAEAF-DCIIGYNSRTEKPN-----L-------NYK-------YYPNLIDLASNCQ  201 (317)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~-----~-------~~~-------~~~~l~el~~~aD  201 (317)
                      |+.+..++|.|.|. |-||+.+++.|... |.+|.+.++.....     .       ...       ....+.++++++|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            55677889999995 99999999999887 58998888653210     0       111       1123567788899


Q ss_pred             EEEEec
Q 042102          202 ILVVAC  207 (317)
Q Consensus       202 vV~~~l  207 (317)
                      +|+-+.
T Consensus        89 ~ViHlA   94 (386)
T PLN02427         89 LTINLA   94 (386)
T ss_pred             EEEEcc
Confidence            776554

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=90.46  E-value=0.97  Score=44.00  Aligned_cols=62  Identities=10%  Similarity=0.148  Sum_probs=47.1

Q ss_pred             cccCCeEEEEec-----C---hhHHHHHHHHhhCCCEEEEeCCCCC-C--C-----------CC--ccccCCHHHhcccC
Q 042102          145 KFTGKSVGILGM-----G---RIGTAIAKRAEAFDCIIGYNSRTEK-P--N-----------LN--YKYYPNLIDLASNC  200 (317)
Q Consensus       145 ~l~g~~vgIiG~-----G---~iG~~~a~~l~~~G~~V~~~~~~~~-~--~-----------~~--~~~~~~l~el~~~a  200 (317)
                      .+.|+||+|+|-     |   ++.++++..+..+|++|.+..+..- .  .           .+  +....++++.++++
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            478999999985     5   5668999999999999988876531 1  1           01  22357899999999


Q ss_pred             CEEEEe
Q 042102          201 QILVVA  206 (317)
Q Consensus       201 DvV~~~  206 (317)
                      |+|..-
T Consensus       264 DvVYtd  269 (395)
T PRK07200        264 DIVYPK  269 (395)
T ss_pred             CEEEEc
Confidence            999775

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.43  E-value=1.1  Score=42.54  Aligned_cols=85  Identities=20%  Similarity=0.234  Sum_probs=54.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC-----CCccc-----cCCH----HHhcc--cCCEEEEeccC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN-----LNYKY-----YPNL----IDLAS--NCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~-----~~~~~-----~~~l----~el~~--~aDvV~~~lp~  209 (317)
                      .|.+|.|.|.|.+|+.+++.++.+|++ |++.+++....     .+...     ..+.    .++..  ..|+|+-+...
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            478999999999999999999999995 88887654321     11110     1111    12222  36777766542


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                       +.+   + ...+..++++..+|.+|-
T Consensus       256 -~~~---~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       256 -PET---Y-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             -HHH---H-HHHHHHhccCCEEEEECC
Confidence             221   1 234667788888888764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK12367 short chain dehydrogenase; Provisional

Probab=90.38  E-value=0.43  Score=43.07  Aligned_cols=65  Identities=20%  Similarity=0.287  Sum_probs=46.2

Q ss_pred             ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CC---cc-----ccCCHHHhcccCCEEEEecc
Q 042102          144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LN---YK-----YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~---~~-----~~~~l~el~~~aDvV~~~lp  208 (317)
                      ..+.|+++.|.|. |.||+++|+.+...|++|++.+++....     ..   ..     ...++++.+...|+++.+..
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG   88 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG   88 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence            4578999999997 6899999999999999998877754111     00   00     11234456778999888763

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=90.35  E-value=0.92  Score=42.21  Aligned_cols=84  Identities=17%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----cc--CCHHHhc-----ccCCEEEEeccC
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YY--PNLIDLA-----SNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~--~~l~el~-----~~aDvV~~~lp~  209 (317)
                      .|.+|.|.| .|.+|+.+++.++.+|++|++..++.+..     .+..    ..  .++.+.+     ...|+++-++..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~  217 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG  217 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence            478999999 59999999999999999988776654321     1111    00  1222222     135777665441


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                       +    .+ ...++.+++++.+|.++.
T Consensus       218 -~----~~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       218 -E----FS-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             -H----HH-HHHHHHhCcCcEEEEecc
Confidence             1    12 456778888888888875

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.32  E-value=0.38  Score=44.32  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ..|++++|.|+|+|.+|..+|+.|...|. ++..+|.
T Consensus        26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~   62 (268)
T PRK15116         26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM   62 (268)
T ss_pred             HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence            46899999999999999999999999995 6777764

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=90.31  E-value=0.34  Score=47.30  Aligned_cols=31  Identities=32%  Similarity=0.459  Sum_probs=26.3

Q ss_pred             CeEEEEecChhHHHHHHHHhh-CCCEEEE-eCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEA-FDCIIGY-NSR  179 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~  179 (317)
                      .+|||.|||+||+.+.+.+.. ++++|.+ .|+
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp  118 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP  118 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence            499999999999999999874 7899876 443

>PRK08265 short chain dehydrogenase; Provisional

Probab=90.28  E-value=0.57  Score=42.26  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=33.3

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.|+++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA   40 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478899999997 8999999999999999999988865

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=90.23  E-value=2.2  Score=39.68  Aligned_cols=107  Identities=14%  Similarity=0.081  Sum_probs=69.6

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEE-EEeCCC--CCCCCCccccCCHHHhccc--CCEEEEeccCChhhhccccHHH
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCII-GYNSRT--EKPNLNYKYYPNLIDLASN--CQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V-~~~~~~--~~~~~~~~~~~~l~el~~~--aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.+|.|.|. |.+|+.+-+.+.+.|.++ ...++.  .....+...+.+++|+-..  .|+.++++|... +...+. +.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~-v~~~l~-e~   83 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPF-AADAIF-EA   83 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHH-HHHHHH-HH
Confidence            346777774 899999999999989873 445655  3333456678899998887  799999999442 233332 22


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGA  257 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga  257 (317)
                      .+.=-+.++++.-+-++. +++.|.+..++..++-.
T Consensus        84 ~~~Gvk~avIis~Gf~e~-~~~~l~~~a~~~giril  118 (286)
T TIGR01019        84 IDAGIELIVCITEGIPVH-DMLKVKRYMEESGTRLI  118 (286)
T ss_pred             HHCCCCEEEEECCCCCHH-HHHHHHHHHHHcCCEEE
Confidence            221112444444444443 67789998888877733

ATP citrate lyases appear to form an outgroup.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=90.20  E-value=0.74  Score=43.31  Aligned_cols=59  Identities=15%  Similarity=0.150  Sum_probs=41.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCCCCc---------------cccC-CHHHhcccCCEEEEec
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPNLNY---------------KYYP-NLIDLASNCQILVVAC  207 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~---------------~~~~-~l~el~~~aDvV~~~l  207 (317)
                      ++|+|||.|.+|+++|-.|...+  -++..+|...+...+.               .... .-.+.++.||+|+++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence            48999999999999999995444  4788888764332110               0011 1156789999999986

>PRK06398 aldose dehydrogenase; Validated

Probab=90.20  E-value=1.2  Score=40.12  Aligned_cols=38  Identities=18%  Similarity=0.111  Sum_probs=33.4

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +++|+++.|.|. |.||+.+|+.|...|++|+..+++..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            478999999996 58999999999999999998887653

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=90.08  E-value=0.54  Score=43.72  Aligned_cols=87  Identities=16%  Similarity=0.140  Sum_probs=56.2

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCCC-----Ccc---cc--CCHH--H--hcccCCEEEEeccCCh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNL-----NYK---YY--PNLI--D--LASNCQILVVACSLTE  211 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~---~~--~~l~--e--l~~~aDvV~~~lp~~~  211 (317)
                      .|.+|.|+|.|.+|+.+++.+++.|++ |.+.+++.+...     +..   ..  .+..  .  .-...|+++-+.+...
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~  238 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK  238 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence            567999999999999999999999997 777766543210     110   00  1111  1  1245788877654221


Q ss_pred             hhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          212 ETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                           .....++.|++++.+|+++...
T Consensus       239 -----~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         239 -----TLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             -----HHHHHHHHHhcCCEEEEEecCC
Confidence                 2345567788888888887654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK08628 short chain dehydrogenase; Provisional

Probab=90.05  E-value=0.54  Score=42.06  Aligned_cols=37  Identities=27%  Similarity=0.262  Sum_probs=32.5

Q ss_pred             cccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.|+++.|.| .|.||+.+|+.|...|++|.+.+++.
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~   41 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSA   41 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCCh
Confidence            57899999999 47899999999999999998887754

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=89.92  E-value=0.7  Score=43.78  Aligned_cols=93  Identities=11%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             eEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCCCC--CCC-------cc--------ccCCHHHhcccCCEEE
Q 042102          150 SVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTEKP--NLN-------YK--------YYPNLIDLASNCQILV  204 (317)
Q Consensus       150 ~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~-------~~--------~~~~l~el~~~aDvV~  204 (317)
                      +|+|+|. |.+|..+|..|...|.       .+..+|..+..  ..+       ..        ...+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999886554       48888874432  110       00        0124568899999998


Q ss_pred             EeccCCh---hhhc-cc--c----H---HHHhcc-CCCcEEEEeCCCcccCHHH
Q 042102          205 VACSLTE---ETQH-IV--N----R---QVINAL-GPKGVLINIGRGLLVDEHE  244 (317)
Q Consensus       205 ~~lp~~~---~t~~-li--~----~---~~l~~m-k~gavlVN~~rg~~vd~~a  244 (317)
                      ++.-...   +|+. ++  |    +   ..+... +|.+++|.++  .++|.-.
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            7644321   1111 11  1    1   223334 4788888886  5565544

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=89.90  E-value=1.4  Score=41.12  Aligned_cols=85  Identities=18%  Similarity=0.322  Sum_probs=53.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-----cCCHHH-h--cccCCEEEEeccCChhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-----YPNLID-L--ASNCQILVVACSLTEET  213 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~~l~e-l--~~~aDvV~~~lp~~~~t  213 (317)
                      .|.+|.|.|.|.+|+.+++.++++|++|++.+++....     .+...     ..++.+ +  +...|+++-+.....  
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~--  240 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK--  240 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence            47799999999999999999999999998887654321     11100     011211 1  134677765432111  


Q ss_pred             hccccHHHHhccCCCcEEEEeCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~r  236 (317)
                         .-...++.++++..+|+++.
T Consensus       241 ---~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         241 ---AISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             ---HHHHHHHHcccCCEEEEEec
Confidence               12345667777888887764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=89.82  E-value=0.54  Score=44.51  Aligned_cols=39  Identities=15%  Similarity=0.110  Sum_probs=33.5

Q ss_pred             cccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          143 TTKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       143 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +++-++++|.|.| .|-||+.+++.|...|.+|.+.++..
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~   44 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP   44 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4567889999999 59999999999999999998776643

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=89.78  E-value=0.42  Score=46.74  Aligned_cols=64  Identities=20%  Similarity=0.294  Sum_probs=46.1

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------Ccc-------ccCCHHHhcccCCEEEEecc
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------NYK-------YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~~-------~~~~l~el~~~aDvV~~~lp  208 (317)
                      .++||++.|.|. |.||+++++.+...|++|...+++.....        ...       ...++.+.+.+.|+++.+..
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAG  254 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHG  254 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCC
Confidence            568999999998 89999999999999999988876543210        000       11234556788999887643

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.61  E-value=0.56  Score=41.55  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=32.9

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +.|+++.|.|. |.||+.+++.+...|++|+..+++.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67899999998 9999999999999999998888764

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=89.37  E-value=0.49  Score=46.29  Aligned_cols=103  Identities=17%  Similarity=0.132  Sum_probs=64.3

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----------Ccccc--CCHHHhcccCCEEEEec--c-CChhh
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----------NYKYY--PNLIDLASNCQILVVAC--S-LTEET  213 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------~~~~~--~~l~el~~~aDvV~~~l--p-~~~~t  213 (317)
                      ++.|||+|.+|.++|+.|+..|++|.++|.......           +....  .+ .+.+..+|+|+..-  | .+|..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            478999999999999999999999999996543211           11111  22 34567899887753  3 22321


Q ss_pred             h-------ccccHH-HH-hccCCCcEEEEeCCCcccCHHHHHHHHHhCC
Q 042102          214 Q-------HIVNRQ-VI-NALGPKGVLINIGRGLLVDEHELVSALLQGR  253 (317)
Q Consensus       214 ~-------~li~~~-~l-~~mk~gavlVN~~rg~~vd~~aL~~al~~g~  253 (317)
                      .       .++.+- .+ ..++...+-|--+.|..--..-+.+.|+...
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            1       133333 22 2333334445556788887777777787644

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=89.34  E-value=1.4  Score=41.90  Aligned_cols=80  Identities=15%  Similarity=0.222  Sum_probs=47.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCC---EEEEe-CCCCCC-C---CC--ccc-cCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDC---IIGYN-SRTEKP-N---LN--YKY-YPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~-~~~~~~-~---~~--~~~-~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      .+|+|+|. |.+|+++.+.|...+.   ++.+. ++.... .   .+  ... ..+..+ ++++|++++++|.. ...  
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~--   80 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSR--   80 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHH--
Confidence            58999996 9999999999984333   33333 222111 0   11  111 112233 48899999999943 222  


Q ss_pred             ccHHHHhcc-CCCcEEEEeC
Q 042102          217 VNRQVINAL-GPKGVLINIG  235 (317)
Q Consensus       217 i~~~~l~~m-k~gavlVN~~  235 (317)
                         +....+ +.|..+||.|
T Consensus        81 ---~~v~~~~~~G~~VIDlS   97 (336)
T PRK05671         81 ---SFAEKARAAGCSVIDLS   97 (336)
T ss_pred             ---HHHHHHHHCCCeEEECc
Confidence               233322 4688889887

>PRK12939 short chain dehydrogenase; Provisional

Probab=89.34  E-value=0.56  Score=41.51  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.++++.|.|. |.||+.+++.+...|++|+..+++.
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~   41 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA   41 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            367899999996 8999999999999999998887654

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=89.33  E-value=0.94  Score=41.09  Aligned_cols=57  Identities=18%  Similarity=0.124  Sum_probs=40.6

Q ss_pred             EEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCCcc-------ccCCHHHhcccCCEEEEecc
Q 042102          152 GILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK-------YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       152 gIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-------~~~~l~el~~~aDvV~~~lp  208 (317)
                      .|.| .|.||+.+++.|...|++|.+.+|+........       ......+.+.++|+|+.+..
T Consensus         2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG   66 (292)
T ss_pred             EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence            4565 599999999999999999999988765431110       01234566788998877664

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=89.29  E-value=1.2  Score=40.79  Aligned_cols=86  Identities=19%  Similarity=0.189  Sum_probs=55.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC-----CCcc-----ccCC----HHHhc--ccCCEEEEeccC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN-----LNYK-----YYPN----LIDLA--SNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~-----~~~~-----~~~~----l~el~--~~aDvV~~~lp~  209 (317)
                      .|.+|.|.|.|.+|+.+++.+++.|++ |++..+.....     .+..     ...+    +.++.  ...|+++-+...
T Consensus       129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~  208 (312)
T cd08269         129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH  208 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            578999999999999999999999998 88776653221     0110     0112    22222  236777766432


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ..     .....++.|++++.+++++..
T Consensus       209 ~~-----~~~~~~~~l~~~g~~~~~g~~  231 (312)
T cd08269         209 QW-----PLDLAGELVAERGRLVIFGYH  231 (312)
T ss_pred             HH-----HHHHHHHHhccCCEEEEEccC
Confidence            11     224567778888888888643

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK05865 hypothetical protein; Provisional

Probab=89.28  E-value=1.6  Score=46.65  Aligned_cols=90  Identities=11%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--CCcc-------ccCCHHHhcccCCEEEEeccCChhh--hcc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--LNYK-------YYPNLIDLASNCQILVVACSLTEET--QHI  216 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--~~~~-------~~~~l~el~~~aDvV~~~lp~~~~t--~~l  216 (317)
                      ++|.|.|. |.||+.+++.|...|.+|.+.+++....  ....       ...++.++++.+|+|+.+.......  .++
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv   80 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI   80 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence            47899995 9999999999999999999888753221  1111       1224566788999888776432210  011


Q ss_pred             c-cHHHHhccCCC--cEEEEeCCCc
Q 042102          217 V-NRQVINALGPK--GVLINIGRGL  238 (317)
Q Consensus       217 i-~~~~l~~mk~g--avlVN~~rg~  238 (317)
                      . ....++.|+..  ..+|.+|...
T Consensus        81 ~GT~nLLeAa~~~gvkr~V~iSS~~  105 (854)
T PRK05865         81 DGTANVLKAMAETGTGRIVFTSSGH  105 (854)
T ss_pred             HHHHHHHHHHHHcCCCeEEEECCcH
Confidence            1 12344555432  3688888764

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=89.22  E-value=0.62  Score=41.67  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.||++.|.|. |.||+.+++.|...|++|...+|+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999996 9999999999999999999888764

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=89.21  E-value=0.66  Score=43.55  Aligned_cols=62  Identities=26%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCC--CEEEEeCCCCCCC---------CCcc-------ccCCHHHhcccCCEEEEe
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFD--CIIGYNSRTEKPN---------LNYK-------YYPNLIDLASNCQILVVA  206 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~---------~~~~-------~~~~l~el~~~aDvV~~~  206 (317)
                      +.|+++.|.|. |.||+.+++.|.+.|  .+|.++++.....         ....       ...++.+++++.|+|+.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence            56889999996 899999999998876  6888887654221         0111       112356677889988765


Q ss_pred             c
Q 042102          207 C  207 (317)
Q Consensus       207 l  207 (317)
                      .
T Consensus        82 A   82 (324)
T TIGR03589        82 A   82 (324)
T ss_pred             c
Confidence            4

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=89.21  E-value=0.47  Score=39.91  Aligned_cols=29  Identities=34%  Similarity=0.415  Sum_probs=24.1

Q ss_pred             eEEEEecChhHHHHHHHHh-hCCCEEEEeC
Q 042102          150 SVGILGMGRIGTAIAKRAE-AFDCIIGYNS  178 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~  178 (317)
                      +|||-|||+||+.+++.+. .-.++|.+.+
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaIn   31 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAIN   31 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence            7999999999999999987 4456776554

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=89.19  E-value=1.3  Score=42.26  Aligned_cols=82  Identities=10%  Similarity=0.098  Sum_probs=46.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCC-CEEEEe-CCCCCCC--CC----c-----c-c-cC-----C-HHHhcccCCEEEEe
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFD-CIIGYN-SRTEKPN--LN----Y-----K-Y-YP-----N-LIDLASNCQILVVA  206 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~-~~~~~~~--~~----~-----~-~-~~-----~-l~el~~~aDvV~~~  206 (317)
                      ++|+|+|. |.+|+.+++.+.... +++.+. +......  ..    .     . . ..     + -.+.+.++|+|+++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            47999995 999999999997755 676544 3321110  00    0     0 0 01     1 12345889999999


Q ss_pred             ccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          207 CSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       207 lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      +|..-.-. +. ...   .+.|..+|+.+
T Consensus        81 ~p~~~s~~-~~-~~~---~~~G~~VIDls  104 (341)
T TIGR00978        81 LPSEVAEE-VE-PKL---AEAGKPVFSNA  104 (341)
T ss_pred             CCHHHHHH-HH-HHH---HHCCCEEEECC
Confidence            99653322 11 111   24566666654

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>cd08293 PTGR2 Prostaglandin reductase

Probab=89.19  E-value=0.74  Score=43.08  Aligned_cols=82  Identities=12%  Similarity=0.194  Sum_probs=53.7

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCC-EEEEeCCCCCCC------CCcc-----ccCCHHHhc-----ccCCEEEEeccC
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDC-IIGYNSRTEKPN------LNYK-----YYPNLIDLA-----SNCQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~-~V~~~~~~~~~~------~~~~-----~~~~l~el~-----~~aDvV~~~lp~  209 (317)
                      |.+|.|.|. |.+|+.+++.++.+|+ +|++..++....      .+..     ...++.+.+     ...|+++-++..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            489999998 9999999999999999 798876654321      1111     011222221     246777766542


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      . .    + ...++.+++++.+|.+|
T Consensus       235 ~-~----~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         235 E-I----S-DTVISQMNENSHIILCG  254 (345)
T ss_pred             H-H----H-HHHHHHhccCCEEEEEe
Confidence            1 1    2 45677788888888876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=89.17  E-value=1.1  Score=46.14  Aligned_cols=64  Identities=17%  Similarity=0.333  Sum_probs=44.5

Q ss_pred             CCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          103 VLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       103 ~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ......||.++-|=|-++             .|.--..--...|.+.+|.|||+|.+|..+|+.|.+.|. +++.+|.
T Consensus       306 mdP~~la~~avdlnlkLm-------------kWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~  370 (664)
T TIGR01381       306 FDPKRLAERSVDLNLKLM-------------KWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN  370 (664)
T ss_pred             cCHHHHHHHHHHHHHHHH-------------hhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            345667777765554443             354211101256899999999999999999999999998 5766653

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=89.14  E-value=0.54  Score=47.84  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=32.6

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      .-.|++|.|||.|.+|-..|..|+..|++|+++++.
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~  169 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG  169 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            357999999999999999999999999999999854

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=89.11  E-value=2.2  Score=40.05  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~  181 (317)
                      .|++|.|.|.|.+|..+++.++.+|.+ |++.+++.
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~  195 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS  195 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            478999999999999999999999997 67776654

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=89.03  E-value=1.2  Score=41.91  Aligned_cols=85  Identities=20%  Similarity=0.266  Sum_probs=56.9

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc-----cCC----HHHhcc--cCCEEEEeccC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY-----YPN----LIDLAS--NCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~----l~el~~--~aDvV~~~lp~  209 (317)
                      .|.+|.|.|.|.+|+.+++.++.+|+ +|.+.+++....     .+...     ..+    +.++..  ..|+++-+...
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~  251 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence            57899999999999999999999999 788877654321     11110     111    222332  37888877653


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ...     -...++.++++..++.++.
T Consensus       252 ~~~-----~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         252 QAT-----LDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             HHH-----HHHHHHhccCCCEEEEEcc
Confidence            221     2456778899999998875

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.02  E-value=1.7  Score=39.17  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=31.8

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      .+.||++.|.|.   +.||+++|+.|...|++|+..+++
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~   42 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG   42 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence            478999999998   489999999999999999887664

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=89.00  E-value=0.35  Score=44.24  Aligned_cols=93  Identities=16%  Similarity=0.256  Sum_probs=64.3

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEe-CCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYN-SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~-~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      +-++.||++.|+|-.. +|..+|..|..-|.++.-. |.+-.....+.....++.....+|+++..+-    ..++|..+
T Consensus       161 gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g----~p~li~~d  236 (309)
T KOG0089|consen  161 GIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVG----IPNLITSD  236 (309)
T ss_pred             CCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcC----CCcccccc
Confidence            5568999999999875 5899999999887655422 1111101111122346677889999998865    34667665


Q ss_pred             HHhccCCCcEEEEeCCCcccCH
Q 042102          221 VINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      .   .|+|+.++|++--.+-|.
T Consensus       237 ~---Ik~Ga~vidvgin~v~dp  255 (309)
T KOG0089|consen  237 M---IKPGAAVIDVGINRVHDP  255 (309)
T ss_pred             e---eecCceeEecCCCccccc
Confidence            5   589999999998777665

>PRK06196 oxidoreductase; Provisional

Probab=88.94  E-value=0.76  Score=42.81  Aligned_cols=37  Identities=14%  Similarity=0.198  Sum_probs=33.1

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.|+++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~   60 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP   60 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999998 7899999999999999999888764

>PRK06128 oxidoreductase; Provisional

Probab=88.94  E-value=0.49  Score=43.79  Aligned_cols=36  Identities=25%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      .+.||++.|.|. |.||+.+|+.|...|++|++..+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            478999999996 899999999999999998766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		1e-117
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		1e-57
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		4e-41
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		9e-40
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		2e-35
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		4e-35
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		1e-34
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		6e-34
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		4e-33
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		1e-29
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		3e-29
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		2e-25
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		2e-25
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		2e-25
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-24
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-24
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		3e-24
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		3e-24
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		9e-24
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		2e-21
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-20
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-20
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		4e-20
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		7e-20
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		1e-19
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		8e-19
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-18
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-18
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		3e-18
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		3e-18
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		3e-18
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		3e-18
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		3e-18
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		7e-18
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		1e-17
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		3e-17
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		6e-17
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		1e-16
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		1e-16
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		1e-16
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		2e-16
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		2e-16
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		5e-16
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		6e-16
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		3e-14
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		2e-13
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		5e-11
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		1e-10
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		1e-09
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-09
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		3e-08
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		4e-08
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		8e-08
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		1e-07
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		1e-07
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		2e-07
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		5e-07
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		6e-06
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		2e-04

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/310 (65%), Positives = 242/310 (78%)
Query: 8   IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQXXXXXXXXXXXXELIE 67
           I VLM+CP+S YLEQE++K FK+F+ W    +  F+    +SI+            ELI+
Sbjct: 24  IGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELID 83
Query: 68  SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESD 127
           +LPKLEIV++ SVGLDK+DL +C+EKG+RV NTPDVLTDDVADLAIGLILAVLRRICE D
Sbjct: 84  ALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECD 143
Query: 128 RYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY 187
           +YVR G WK G+FK+TTKF+GK VGI+G+GRIG A+A+RAEAFDC I Y SR++KPN NY
Sbjct: 144 KYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNY 203
Query: 188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS 247
            YY ++++LASN  ILVVAC LT ET HI+NR+VI+ALGPKGVLINIGRG  VDE ELVS
Sbjct: 204 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVS 263
Query: 248 XXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
                       DVFE EP+VPE+L GLENVVLLPHV S TVETRK MADLVVGNL+AHF
Sbjct: 264 ALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323
Query: 308 GKKPLLTPVV 317
             KPLLTPVV
Sbjct: 324 SGKPLLTPVV 333

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 169/299 (56%), Gaps = 2/299 (0%)
Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQXXXXXXXXXXXXELIESL 69
           +L+V P   ++  E+++++ V +L+   D+   +     SI+            E  E L
Sbjct: 33  LLLVEPXXPFVXDELQRNYSVHRLYQAADRPA-LEAALPSIRAVATGGGAGLSNEWXEKL 91
Query: 70  PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
           P L I+A   VG DK+DLAR + + I V  TP VL DDVADL I L LAVLRR+ + DR 
Sbjct: 92  PSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRL 151
Query: 130 VRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK 188
           VR G W  GE   +     GK +G+LG+G+IG A+A RAEAF   + Y +R+    +++ 
Sbjct: 152 VREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWI 211
Query: 189 YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSX 248
            + + +DLA +  +L V  + +  TQ+IV+  ++ ALGP+G+++N+ RG +VDE  L+  
Sbjct: 212 AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271
Query: 249 XXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
                      DVF +EP +  E     N VL PH  SATVETR A   LV+ NL AHF
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVLANLAAHF 330

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/252 (45%), Positives = 149/252 (59%), Gaps = 11/252 (4%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E+ E+ PKL IVA  +VG D ID+    ++GI V NTPDVLTD  ADLA  L+LA  R +
Sbjct: 60  EVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHV 119
Query: 124 CESDRYVRSGEWKKGEFKMTTKF------TGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
            + DR+VRSGEWKK       K+       GK++GI+G+GRIG AIAKRA+ F+  I Y 
Sbjct: 120 VKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYY 179
Query: 178 SRTEKP----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN 233
           SRT K      LN ++ P L DL      +V+A  LT ET H++N + +  +    +LIN
Sbjct: 180 SRTRKEEVERELNAEFKP-LEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILIN 238
Query: 234 IGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRK 293
           I RG +VD + LV             DVFE EP   EEL  L+NVVL PH+ SA+   R+
Sbjct: 239 IARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGARE 298
Query: 294 AMADLVVGNLQA 305
            MA+LV  NL A
Sbjct: 299 GMAELVAKNLIA 310

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  160 bits (405), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 114/252 (45%), Positives = 147/252 (58%), Gaps = 11/252 (4%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E+ E+ PKL IVA  +VG D ID+    ++GI V NTPDVLTD  ADLA  L+LA  R +
Sbjct: 60  EVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHV 119
Query: 124 CESDRYVRSGEWKKGEFKMTTKF------TGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
            + DR+VRSGEWKK       K+       GK++GI+G+GRIG AIAKRA+ F+  I Y 
Sbjct: 120 VKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYY 179
Query: 178 SRTEKP----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN 233
           SRT K      LN ++ P L DL      +V+A  LT ET H++N + +       +LIN
Sbjct: 180 SRTRKEEVERELNAEFKP-LEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILIN 238
Query: 234 IGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRK 293
           I RG +VD + LV             DVFE EP   EEL  L+NVVL PH+ SA+   R+
Sbjct: 239 IARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGARE 298
Query: 294 AMADLVVGNLQA 305
             A+LV  NL A
Sbjct: 299 GXAELVAKNLIA 310

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 132/248 (53%), Gaps = 7/248 (2%)
Query: 72  LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVR 131
           L++++T SVG+D + L   K++GIRV  TPDVLTD  A+LA+ L+L   RR+ E+   V+
Sbjct: 77  LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 136
Query: 132 SGEWK--KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNLNYK 188
           +G W   K  +      T  +VGI+G+GRIG AIA+R + F      Y  R  +P    +
Sbjct: 137 NGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE 196
Query: 189 YYPNLI---DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
           +    +   +LA+    +VVACSLT  T+ + N+     +    V INI RG +V++ +L
Sbjct: 197 FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDL 256
Query: 246 VSXXXXXXXXXXXXDVFEHEP-DVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQ 304
                         DV   EP      L+ L+N V+LPH+ SAT  TR  M+ L   NL 
Sbjct: 257 YQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLL 316
Query: 305 AHFGKKPL 312
           A    +P+
Sbjct: 317 AGLRGEPM 324

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/248 (36%), Positives = 130/248 (52%), Gaps = 6/248 (2%)
Query: 64  ELIESL-PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
           E+I  L P L+ +AT SVG D ID A  +  GI+V +TPDVL+D  A++A  L+L   RR
Sbjct: 86  EVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRR 145
Query: 123 ICESDRYVRSGEWKK-GEFK-MTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT 180
             E+DR VRSG W   G  + +    TG+ +GI G GRIG AIA RA  F   I Y++RT
Sbjct: 146 GYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRT 205
Query: 181 EKPNL---NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
              +       Y+  L  L     I ++A     E +  ++   I  +    V+INI RG
Sbjct: 206 RLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRG 265
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297
            L+++  L+             DVF +EP +      L+N+ L PH+ SAT ETR A   
Sbjct: 266 DLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAXGW 325
Query: 298 LVVGNLQA 305
           L++  ++A
Sbjct: 326 LLIQGIEA 333

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/249 (35%), Positives = 132/249 (53%), Gaps = 10/249 (4%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E++E+  +L++++  S G D IDL    ++GI V     +L++ VA+  +GLI+ ++R+I
Sbjct: 57  EVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKI 116
Query: 124 CESDRYVRSGEWKKGE-----FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNS 178
             +D+++R GEW+        FK      GK VGILGMG IG AIA+R   F   + Y S
Sbjct: 117 HYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWS 176
Query: 179 RTEKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
           R  K N+  +    Y ++ +L     I+++A  LT +T HI+N + +  L  K  L+NIG
Sbjct: 177 RHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIG 235
Query: 236 RGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLE-NVVLLPHVASATVETRKA 294
           RG LVDE  +              DVFE EP    EL   E   VL PH A   +E ++ 
Sbjct: 236 RGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQED 295
Query: 295 MADLVVGNL 303
           +    V NL
Sbjct: 296 VGFRAVENL 304

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/247 (35%), Positives = 129/247 (52%), Gaps = 7/247 (2%)
Query: 72  LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVR 131
           L++++T SVG+D + L   K++GIRV  TPDVLTD  A+LA+ L+L   RR+ E+   V+
Sbjct: 75  LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 134
Query: 132 SGEWK--KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNLNYK 188
           +G W   K  +      T  +VGI+G+GRIG AIA+R + F      Y  R  +P    +
Sbjct: 135 NGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE 194
Query: 189 YYPNLI---DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
           +    +   +LA+    +VVACSLT  T+ + N+          V INI RG +V++ +L
Sbjct: 195 FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDL 254
Query: 246 VSXXXXXXXXXXXXDVFEHEP-DVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQ 304
                         DV   EP      L+ L+N V+LPH+ SAT  TR   + L   NL 
Sbjct: 255 YQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTXSLLAANNLL 314
Query: 305 AHFGKKP 311
           A    +P
Sbjct: 315 AGLRGEP 321

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 8/253 (3%)
Query: 64  ELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
           E+I+ +P+ ++ ++T S+G D IDL  CK +GI+V N P  +T   A++A+ L+L   RR
Sbjct: 59  EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARR 118
Query: 123 ICESDRYVRSGEWKKGE--FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY---- 176
             E ++ +R+  W   E    +  K   K++GI G G IG A+AKRA+ FD  I Y    
Sbjct: 119 AGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 178
Query: 177 -NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
             S +++ +    ++ +L  L S  Q   +    T ET++  N+  I +L    +++N  
Sbjct: 179 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238
Query: 236 RGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAM 295
           RG LVD   +V+            DVF  EP++ E    L N  L PH+ SA  + R+ M
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298
Query: 296 ADLVVGNLQAHFG 308
           A      + A FG
Sbjct: 299 AHQANDLIDALFG 311

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/265 (34%), Positives = 140/265 (52%), Gaps = 10/265 (3%)
Query: 35  HFEDKEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKG 94
            + D+++ +   KD ++             +IES PKL+++A   VGLD ID+   KEKG
Sbjct: 31  EYPDEDRLVELVKD-VEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKG 89
Query: 95  IRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGIL 154
           I V N P   +  VA+LA+GL+ +V R+I  +DR +R G W K E  M  +  GK++GI+
Sbjct: 90  IEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE-AMGIELEGKTIGII 148
Query: 155 GMGRIGTAIAKRAEAFDCII----GYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLT 210
           G GRIG  +AK A A    I     Y +      +N K+  +L  L     ++ +   L 
Sbjct: 149 GFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DLETLLKESDVVTIHVPLV 207
Query: 211 EETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPE 270
           E T H++N + +  +    +LIN  RG +VD + LV             DVFE EP +P+
Sbjct: 208 ESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEP-LPK 266
Query: 271 E--LIGLENVVLLPHVASATVETRK 293
           +  L   +NVVL PH+ ++TVE ++
Sbjct: 267 DHPLTKFDNVVLTPHIGASTVEAQE 291

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 143/252 (56%), Gaps = 7/252 (2%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E+++    L+++A  SVG+D +DL   +E+GIRV +TP VLT+  ADL + L+LAV RR+
Sbjct: 58  EVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRV 117
Query: 124 CESDRYVRSGEWK--KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE 181
            E   Y R G WK    E  +     G ++G++GMGRIG A+AKRA AF   + Y++RT 
Sbjct: 118 VEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTP 177
Query: 182 KPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241
           KP L Y +  +L +L     ++ +   LT ET  ++NR+ + A+    +L+N  RG LVD
Sbjct: 178 KP-LPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVD 235
Query: 242 EHELVSXXXXXXXXXXXXDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVV 300
              LV             DV + EP  P   L  L N V+ PH+ SA   TR+ MA++ V
Sbjct: 236 TEALVE-ALRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAV 294
Query: 301 GNLQAHF-GKKP 311
            NL A   G++P
Sbjct: 295 ENLLAVLEGREP 306

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 8/234 (3%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           ++I +  KL++V     G+D +DL     KGI V NTP+  +   A+L  G+I+ + R+I
Sbjct: 82  DVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQI 141
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SR 179
            ++   ++ G+W++ +F M T+  GK++GILG+GRIG  +A R ++F    IGY+   S 
Sbjct: 142 PQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP 200
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV-LINIGRGL 238
               +   +  P L ++   C  + V   L   T  ++N     A   KGV ++N  RG 
Sbjct: 201 EVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGLLNDNTF-AQCKKGVRVVNCARGG 258
Query: 239 LVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETR 292
           +VDE  L+             DVF  EP     L+  ENV+  PH+ ++T E +
Sbjct: 259 IVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQ 312

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 19/290 (6%)
Query: 39  KEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA 98
           +E+ +   +D+ Q            + +++ P+L ++     G D  D+  C  +G+ + 
Sbjct: 36  REEILRRCRDA-QAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLT 94
Query: 99  NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMG 157
             PD+LT   A+LAIGL + + R +  +D +VRSG+++  + +   T     +VG LGMG
Sbjct: 95  FVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMG 154
Query: 158 RIGTAIAKRAEAFDCIIGYNSR------TEKPNLNYKYYPNLIDLASNCQILVVACSLTE 211
            IG A+A R + +   + Y++R      TE+  L  +      +L ++   +++A  L  
Sbjct: 155 AIGLAMADRLQGWGATLQYHARKALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNA 212
Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHE----PD 267
           +T H+VN +++  + P  +L+N  RG +VDE  +++            DVFE E     D
Sbjct: 213 DTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARAD 272
Query: 268 VPEE----LIGLENVVLLPHVASATVETRKAMADLVVGN-LQAHFGKKPL 312
            P++    L+   N +  PH+ SA    R  +      N LQA  G++P+
Sbjct: 273 RPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 19/290 (6%)
Query: 39  KEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA 98
           +E+ +   +D+ Q            + +++ P+L ++     G D  D+  C  +G+ + 
Sbjct: 36  REEILRRCRDA-QAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLT 94
Query: 99  NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMG 157
             PD+LT   A+LAIGL + + R +  +D +VRSG+++  + +   T     +VG LGMG
Sbjct: 95  FVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMG 154
Query: 158 RIGTAIAKRAEAFDCIIGYNSR------TEKPNLNYKYYPNLIDLASNCQILVVACSLTE 211
            IG A+A R + +   + Y++R      TE+  L  +      +L ++   +++A  L  
Sbjct: 155 AIGLAMADRLQGWGATLQYHARKALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNA 212
Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHE----PD 267
           +T H+VN +++  + P  +L+N  RG +VDE  +++            DVFE E     D
Sbjct: 213 DTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARAD 272
Query: 268 VPEE----LIGLENVVLLPHVASATVETRKAMADLVVGN-LQAHFGKKPL 312
            P++    L+   N +  PH+ SA    R  +      N LQA  G++P+
Sbjct: 273 RPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 142/290 (48%), Gaps = 19/290 (6%)
Query: 39  KEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA 98
           +E+ +   +D+ Q            + +++ P+L ++     G D  D+  C  +G+ + 
Sbjct: 36  REEILRRCRDA-QAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLT 94
Query: 99  NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMG 157
             PD+LT   A+LAIGL + + R +  +D +VRSG+++  + +   T     +VG LGMG
Sbjct: 95  FVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMG 154
Query: 158 RIGTAIAKRAEAFDCIIGY------NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTE 211
            IG A+A R + +   + Y      +++TE+  L  +      +L ++   +++A  L  
Sbjct: 155 AIGLAMADRLQGWGATLQYHEAKALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNA 212
Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHE----PD 267
           +T H+VN +++  + P  +L+N  RG +VDE  +++            DVFE E     D
Sbjct: 213 DTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARAD 272
Query: 268 VPEE----LIGLENVVLLPHVASATVETRKAMADLVVGN-LQAHFGKKPL 312
            P++    L+   N +  PH+ SA    R  +      N LQA  G++P+
Sbjct: 273 RPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 142/290 (48%), Gaps = 19/290 (6%)
Query: 39  KEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA 98
           +E+ +   +D+ Q            + +++ P+L ++     G D  D+  C  +G+ + 
Sbjct: 36  REEILRRCRDA-QAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLT 94
Query: 99  NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMG 157
             PD+LT   A+LAIGL + + R +  +D +VRSG+++  + +   T     +VG LGMG
Sbjct: 95  FVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMG 154
Query: 158 RIGTAIAKRAEAFDCIIGY------NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTE 211
            IG A+A R + +   + Y      +++TE+  L  +      +L ++   +++A  L  
Sbjct: 155 AIGLAMADRLQGWGATLQYHEAKALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNA 212
Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHE----PD 267
           +T H+VN +++  + P  +L+N  RG +VDE  +++            DVFE E     D
Sbjct: 213 DTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARAD 272
Query: 268 VPEE----LIGLENVVLLPHVASATVETRKAMADLVVGN-LQAHFGKKPL 312
            P++    L+   N +  PH+ SA    R  +      N LQA  G++P+
Sbjct: 273 RPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 6/233 (2%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E++ + PKL+IVA   VGLD +D+     +G+ V N P       A+ A+ L+LA  R+I
Sbjct: 58  EVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQI 117
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SR 179
             +D  +R   WK+  F  T  F GK+VG++G+GRIG  +A+R  AF   ++ Y+   S 
Sbjct: 118 PAADASLREHTWKRSSFSGTEIF-GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 176
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
                L  +   +L DL +    + V    T ET  +++++ +    P  +++N  RG L
Sbjct: 177 ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGL 235
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETR 292
           VDE  L              DVF  EP     L  L  VV+ PH+ ++T E +
Sbjct: 236 VDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQ 288

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 6/233 (2%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E++ + PKL+IVA   VGLD +D+     +G+ V N P       A+ A+ L+LA  R+I
Sbjct: 59  EVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQI 118
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SR 179
             +D  +R   WK+  F  T  F GK+VG++G+GRIG  +A+R  AF   ++ Y+   S 
Sbjct: 119 PAADASLREHTWKRSSFSGTEIF-GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 177
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
                L  +   +L DL +    + V    T ET  +++++ +    P  +++N  RG L
Sbjct: 178 ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGL 236
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETR 292
           VDE  L              DVF  EP     L  L  VV+ PH+ ++T E +
Sbjct: 237 VDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQ 289

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score =  107 bits (267), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 132/265 (49%), Gaps = 18/265 (6%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           + +++ P+L ++     G D  D+  C  +G+ +   PD+LT   A+LAIGL + + R +
Sbjct: 61  DFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHL 120
Query: 124 CESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY------ 176
             +D +VRSG+++  + +   T     +VG LG G IG A A R + +   + Y      
Sbjct: 121 RAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKAL 180
Query: 177 NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236
           +++TE+  L  +      +L ++   +++A  L  +T H+VN +++  + P  +L+N  R
Sbjct: 181 DTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 238
Query: 237 GLLVDEHELVSXXXXXXXXXXXXDVFEHE----PDVPEE----LIGLENVVLLPHVASAT 288
           G +VDE  +++            DVFE E     D P++    L+   N +  PH+ SA 
Sbjct: 239 GSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 298
Query: 289 VETRKAMADLVVGN-LQAHFGKKPL 312
              R  +      N LQA  G++P+
Sbjct: 299 RAVRLEIERCAAQNILQALAGERPI 323

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 125/247 (50%), Gaps = 11/247 (4%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           ++IE   KL+I+A   +GLD ID    +++ I+V   P   TD   +L IGL++A  R++
Sbjct: 61  DVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKM 120
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGY---NSR 179
             S    +SG +KK E     +  GK++GI+G GRIGT +   A A    ++ Y   + R
Sbjct: 121 YTSMALAKSGIFKKIE---GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR 177
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
            +   +N K   +L +L  N  ++ +  +++++ + I++      +    +++N  R + 
Sbjct: 178 EKAEKINAKAV-SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVA 236
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPE---ELIGLENVVLLPHVASATVETRKAMA 296
           V+   L+             DVF +EP   E   EL+  E V++  H+ + T E +K +A
Sbjct: 237 VNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVA 296
Query: 297 DLVVGNL 303
           ++   NL
Sbjct: 297 EMTTQNL 303

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 20/270 (7%)
Query: 64  ELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
           +LI  LP  L++ A    G D +DL    E+G+  AN+        +DLA+ LIL+V R 
Sbjct: 72  DLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRL 131
Query: 123 ICESDRYVRSGEWKKGEFKMTTKFTGKS--------VGILGMGRIGTAIAKRAE------ 168
              S+R  R+G+ +   F       GKS        +G +G+G I   IA++A       
Sbjct: 132 ASYSERAARTGDPET--FNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 169 -AFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
             +  +   ++ TEK  L  +   +L +LA     + V+    + T H+++     A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 228 KGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASA 287
              ++N  RG ++ +  L++            DV E EP+V +ELI +++V L  H+   
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGV 308
Query: 288 TVETRKAMADLVVGNLQAHFGK-KPLLTPV 316
            +ET      L + N+     + KPLLTP 
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 124/270 (45%), Gaps = 20/270 (7%)
Query: 64  ELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
           +LI  LP  L++ A    G D +DL    E+G+  AN+        +DLA+ LIL+V R 
Sbjct: 72  DLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRL 131
Query: 123 ICESDRYVRSGEWKKGEFKMTTKFTGKS--------VGILGMGRIGTAIAKRAE------ 168
              S+R  R+G+ +   F       GKS        +G +G+G I   IA++A       
Sbjct: 132 ASYSERAARTGDPET--FNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 169 -AFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
             +  +   ++ TEK  L  +   +L +LA     + V+    + T H+++     A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 228 KGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASA 287
              ++N  RG ++ +  L++            DV E EP V +ELI +++V L  H+   
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGV 308
Query: 288 TVETRKAMADLVVGNLQAHFGK-KPLLTPV 316
            +ET      L + N+     + KPLLTP 
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 124/270 (45%), Gaps = 20/270 (7%)
Query: 64  ELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
           ++I  LP  L++ A    G D +DL    E+G+  AN+        +DLA+ LIL+V R 
Sbjct: 72  DIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRL 131
Query: 123 ICESDRYVRSGEWKKGEFKMTTKFTGKS--------VGILGMGRIGTAIAKRAE------ 168
              S+R  R+G+ +   F       GKS        +G +G+G I   IA++A       
Sbjct: 132 ASYSERAARTGDPET--FNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 169 -AFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
             +  +   ++ TEK  L  +   +L +LA     + V+    + T H+++     A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 228 KGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASA 287
              ++N  RG ++ +  L++            DV E EP V +ELI +++V L  H+   
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGV 308
Query: 288 TVETRKAMADLVVGNLQAHFGK-KPLLTPV 316
            +ET      L + N+     + KPLLTP 
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 24/244 (9%)
Query: 79  SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG 138
           +VG D ID+   K+ GIR++N P      +A+ A+   L +LR + +    +++G+++K 
Sbjct: 76  NVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA 135
Query: 139 EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNS---RTEKPNLNYKYYPNLI 194
              +  +   ++VG++G G IG    K  + F   +I Y+    + + P+ +Y    +L 
Sbjct: 136 GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYV---SLE 192
Query: 195 DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXX 254
           DL     ++ +     E+  HI+N    N + P  ++IN  R  L+D   ++S       
Sbjct: 193 DLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252
Query: 255 XXXXXDVFEHEPD--------------VPEELIGLENVVLLPHVASATVETRKAMADLVV 300
                D +E+E +              + +EL+G+ NVVL PH+A     T  A+ ++V 
Sbjct: 253 AGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA---YYTETAVHNMVY 309
Query: 301 GNLQ 304
            +LQ
Sbjct: 310 FSLQ 313

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 7/246 (2%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E+  +  +L  V   SVG ++++L   +++GI V N P   T  VA+L IG I+ ++RRI
Sbjct: 73  EIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRI 132
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
                   +G W+K     + +  GK++GI+G G IG+ +   AE+    + Y   ++K 
Sbjct: 133 FPRSVSAHAGGWEKTAIG-SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKL 191
Query: 184 NL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDE 242
              N K   +L +L     ++ +    ++ T  ++    +  +     LIN  RG  VD 
Sbjct: 192 QYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDL 251
Query: 243 HELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKAMAD 297
             L              DVF  EP    E     L GLENV+L PH+  +T E ++ +  
Sbjct: 252 EALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGT 311
Query: 298 LVVGNL 303
            V   L
Sbjct: 312 EVTRKL 317

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 26/267 (9%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           EL+   P+L+++ T SVG D IDL  CK+KGI V + P    + VA+     IL +++R+
Sbjct: 57  ELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRL 116
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
              +  V+   + +    +  +    ++G++G GRIG+ +A    AF   +      ++ 
Sbjct: 117 KRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRE 176
Query: 184 NLNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241
           +L  K   Y +L +L     ++ +    T+ET H +N + I+       LIN  RG +VD
Sbjct: 177 DLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVD 236
Query: 242 EHELVSXXXXXXXXXXXXDVFEHE-----PDVPE-----------ELIGLENVVLLPHVA 285
              L              DVFE E         E           EL   +NV++ PH+A
Sbjct: 237 TDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIA 296
Query: 286 SAT--------VETRKAMADLVVGNLQ 304
             T         ET K +   V G+L+
Sbjct: 297 YYTDKSLERIREETVKVVKAFVKGDLE 323

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 13/249 (5%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           ++I +  KL  +   ++G +++DL    ++GI V N P   T  VA+L IG +L +LR +
Sbjct: 68  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
            E++     G W K   G F+      GK +GI+G G IGT +   AE+    +  Y+  
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 183
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
            + P  N     +L DL +   ++ +       T++++  + I+ + P  +LIN  RG +
Sbjct: 184 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 243
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
           VD   L              DVF  EP    +     L   +NV+L PH+  +T E ++ 
Sbjct: 244 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 303
Query: 295 MADLVVGNL 303
           +   V G L
Sbjct: 304 IGLEVAGKL 312

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 13/249 (5%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           ++I +  KL  +   ++G +++DL    ++GI V N P   T  VA+L IG +L +LR +
Sbjct: 68  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
            E++     G W K   G F+      GK +GI+G G IGT +   AE+    +  Y+  
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 183
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
            + P  N     +L DL +   ++ +       T++++  + I+ + P  +LIN  RG +
Sbjct: 184 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 243
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
           VD   L              DVF  EP    +     L   +NV+L PH+  +T E ++ 
Sbjct: 244 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 303
Query: 295 MADLVVGNL 303
           +   V G L
Sbjct: 304 IGLEVAGKL 312

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E +E    L I+     G D ID+    + GI V N P    ++ AD  +  IL + RR 
Sbjct: 81  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 124 CESDRYVRSG------EWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
               + +R G      E  +       +  G+++GI+G+GR+G A+A RA+AF    G+N
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAF----GFN 196
Query: 178 SRTEKPNLN--------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
                P L+         +    L DL  +   + + C L E   H++N   +  +    
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 230 VLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA-- 285
            L+N  RG LVDE  L              DV E EP    +  L    N++  PH A  
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY 316
Query: 286 --SATVETRKAMA 296
              A++E R+  A
Sbjct: 317 SEQASIEMREEAA 329

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E +E    L I+     G D ID+    + GI V N P    ++ AD  +  IL + RR 
Sbjct: 81  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 124 CESDRYVRSG------EWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
               + +R G      E  +       +  G+++GI+G+GR+G A+A RA+AF    G+N
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAF----GFN 196
Query: 178 SRTEKPNLN--------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
                P L+         +    L DL  +   + + C L E   H++N   +  +    
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 230 VLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA-- 285
            L+N  RG LVDE  L              DV E EP    +  L    N++  PH A  
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY 316
Query: 286 --SATVETRKAMA 296
              A++E R+  A
Sbjct: 317 SEQASIEMREEAA 329

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 11/258 (4%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E I   PKL++  T  +G D +DL    +  I VA      ++ VA+  + ++L ++R  
Sbjct: 106 ERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNY 165
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
             S  + R+G W   +    +    G  VG +  GRIG  + +    FD  + Y  R   
Sbjct: 166 IPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRL 225
Query: 183 P-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
           P      LN  ++    D+   C ++ + C L  ET+H++N + +        L+N  RG
Sbjct: 226 PEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARG 285
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
            L D   +V             DV+  +P   D P     + +  + PH++  ++  +  
Sbjct: 286 KLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT--MPHNGMTPHISGTSLSAQTR 343
Query: 295 MADLVVGNLQAHFGKKPL 312
            A      L+ +F  +P+
Sbjct: 344 YAAGTREILECYFEGRPI 361

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 11/258 (4%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E I   PKL++  T  +G D +DL    +  I VA      ++ VA+  + ++L ++R  
Sbjct: 107 ERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNY 166
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
             S  + R+G W   +    +    G  VG +  GRIG  + +    FD  + Y  R   
Sbjct: 167 IPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRL 226
Query: 183 P-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
           P      LN  ++    D+   C ++ + C L  ET+H++N + +        L+N  RG
Sbjct: 227 PEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARG 286
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
            L D   +V             DV+  +P   D P     + +  + PH++  ++  +  
Sbjct: 287 KLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT--MPHNGMTPHISGTSLSAQTR 344
Query: 295 MADLVVGNLQAHFGKKPL 312
            A      L+ +F  +P+
Sbjct: 345 YAAGTREILECYFEGRPI 362

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E +E    L I+     G D ID+    + GI V N P    ++ AD  +  IL + RR 
Sbjct: 78  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 124 CESDRYVRSG------EWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
               + +R G      E  +       +  G+++GI+G+GR+G A+A RA+AF    G+N
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAF----GFN 193
Query: 178 SRTEKPNLN--------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
                P L+         +    L DL  +   + + C L E   H++N   +  +    
Sbjct: 194 VLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 253
Query: 230 VLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA-- 285
            L+N  RG LVDE  L              DV E EP    +  L    N++  PH A  
Sbjct: 254 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY 313
Query: 286 --SATVETRKAMA 296
              A++E R+  A
Sbjct: 314 SEQASIEMREEAA 326

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 18/250 (7%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR- 122
           E +E    L ++     G D +D+    E GI V N P    ++ AD  I  IL + RR 
Sbjct: 62  EDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRN 121
Query: 123 ------ICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD-CIIG 175
                 + E  R V+S E  +       +  G+++G++G GR G A+A RA+AF   +I 
Sbjct: 122 TWLYQALREGTR-VQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIF 180
Query: 176 YNSRTE---KPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232
           Y+   +   + +L  +    L DL      + + C+L E   H++N   I  +     L+
Sbjct: 181 YDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLV 240
Query: 233 NIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA----S 286
           N  RG LVDE  L              DV E EP    +  L    N++  PH A     
Sbjct: 241 NAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQ 300
Query: 287 ATVETRKAMA 296
           A++E R+A A
Sbjct: 301 ASLEMREAAA 310

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 13/249 (5%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           ++I +  KL  +    +G +++DL    ++GI V N P   T  VA+L IG +L +LR +
Sbjct: 67  DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 126
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
            E++     G W K   G F+      GK +GI+G G IGT +   AE+    +  Y+  
Sbjct: 127 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 182
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
            + P  N     +L DL +   ++ +       T++++  + I+ + P  +LIN  RG +
Sbjct: 183 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 242
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
           VD   L              DVF  EP    +     L   +NV+L PH+  +T E ++ 
Sbjct: 243 VDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQEN 302
Query: 295 MADLVVGNL 303
           +   V G L
Sbjct: 303 IGLEVAGKL 311

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 24/253 (9%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E +E    L I+     G D ID+    + GI V N P    ++ AD  +  IL + RR 
Sbjct: 81  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 124 CESDRYVRSG------EWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
               + +R G      E  +       +  G+++GI+G+ R+G A+A RA+AF    G+N
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAF----GFN 196
Query: 178 SRTEKPNLN--------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
                P L+         +    L DL  +   + + C L E   H++N   +  +    
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 230 VLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA-- 285
            L+N  RG LVDE  L              DV E EP    +  L    N++  PH A  
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY 316
Query: 286 --SATVETRKAMA 296
              A++E R+  A
Sbjct: 317 SEQASIEMREEAA 329

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 13/249 (5%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           ++I +  KL  +    +G +++DL    ++GI V N P   T  VA+L IG +L +LR +
Sbjct: 68  DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
            E++     G W K   G F+      GK +GI+G G IGT +   AE+    +  Y+  
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIE 183
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
            + P  N     +L DL +   ++ +       T++    + I+   P  +LIN  RG +
Sbjct: 184 NKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTV 243
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
           VD   L              DVF  EP    +     L   +NV+L PH+  +T E ++ 
Sbjct: 244 VDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQEN 303
Query: 295 MADLVVGNL 303
           +   V G L
Sbjct: 304 IGLEVAGKL 312

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 11/258 (4%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E I     L++  T  +G D +DL    ++ + VA      +  VA+  + +IL+++R  
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
             S  + R G W   +            VG +  GRIG A+ +R   FD  + Y  R   
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 183 PN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
           P      LN  ++    D+   C ++ + C L  ET+H++N + +        ++N  RG
Sbjct: 227 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 286
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
            L D   +              DV+  +P   D P   +      + PH++  T+  +  
Sbjct: 287 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQAR 344
Query: 295 MADLVVGNLQAHFGKKPL 312
            A      L+  F  +P+
Sbjct: 345 YAAGTREILEXFFEGRPI 362

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 11/258 (4%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E I     L++  T  +G D +DL    ++ + VA      +  VA+  + +IL+++R  
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
             S  + R G W   +            VG +  GRIG A+ +R   FD  + Y  R   
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 183 PN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
           P      LN  ++    D+   C ++ + C L  ET+H++N + +        ++N  RG
Sbjct: 227 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 286
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
            L D   +              DV+  +P   D P   +      + PH++  T+  +  
Sbjct: 287 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQAR 344
Query: 295 MADLVVGNLQAHFGKKPL 312
            A      L+  F  +P+
Sbjct: 345 YAAGTREILECFFEGRPI 362

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 11/258 (4%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E I     L++  T  +G D +DL    ++ + VA      +  VA+  + +IL+++R  
Sbjct: 106 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 165
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
             S  + R G W   +            VG +  GRIG A+ +R   FD  + Y  R   
Sbjct: 166 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 225
Query: 183 PN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
           P      LN  ++    D+   C ++ + C L  ET+H++N + +        ++N  RG
Sbjct: 226 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 285
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
            L D   +              DV+  +P   D P   +      + PH++  T+  +  
Sbjct: 286 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQAR 343
Query: 295 MADLVVGNLQAHFGKKPL 312
            A      L+  F  +P+
Sbjct: 344 YAAGTREILECFFEGRPI 361

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 13/241 (5%)
Query: 77  TCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK 136
           T  +G D IDL      G+ VA         VA+  +  IL ++R        V  GEW 
Sbjct: 92  TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 151
Query: 137 -KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE-KPNL----NYKYY 190
             G         GK++G +G GRIG  + +R + F C + Y+ R +  P L      K+ 
Sbjct: 152 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV 211
Query: 191 PNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSXX 249
            +L ++   C ++V+   LTE+T+ + N+++I  L  KGVLI N  RG +++   +V   
Sbjct: 212 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKL-KKGVLIVNNARGAIMERQAVVDAV 270
Query: 250 XXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306
                     DV++ +P   D P     + N  + PH +  T++ +   A      L+ +
Sbjct: 271 ESGHIGGYSGDVWDPQPAPKDHPWRY--MPNQAMTPHTSGTTIDAQLRYAAGTKDMLERY 328
Query: 307 F 307
           F
Sbjct: 329 F 329

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 13/241 (5%)
Query: 77  TCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK 136
           T  +G D IDL      G+ VA         VA+  +  IL ++R        V  GEW 
Sbjct: 98  TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 157
Query: 137 -KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE-KPNL----NYKYY 190
             G         GK++G +G GRIG  + +R + F C + Y+ R +  P L      K+ 
Sbjct: 158 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV 217
Query: 191 PNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSXX 249
            +L ++   C ++V+   LTE+T+ + N+++I  L  KGVLI N  RG +++   +V   
Sbjct: 218 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKL-KKGVLIVNNARGAIMERQAVVDAV 276
Query: 250 XXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306
                     DV++ +P   D P     + N  + PH +  T++ +   A      L+ +
Sbjct: 277 ESGHIGGYSGDVWDPQPAPKDHPWRY--MPNQAMTPHTSGTTIDAQLRYAAGTKDMLERY 334
Query: 307 F 307
           F
Sbjct: 335 F 335

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 13/249 (5%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           ++I +  KL  +   ++G +++DL    ++GI V N P   T  VA+L IG +L +LR +
Sbjct: 62  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
            E++     G   K   G F+      GK +GI+G G IGT +   AE+    +  Y+  
Sbjct: 122 PEANAKAHRGVGNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIE 177
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
            + P  N     +L DL +   ++ +       T++    + I+   P  +LIN  RG +
Sbjct: 178 NKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTV 237
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
           VD   L              DVF  EP    +     L   +NV+L PH+  +T E ++ 
Sbjct: 238 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 297
Query: 295 MADLVVGNL 303
           +   V G L
Sbjct: 298 IGLEVAGKL 306

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 19/246 (7%)
Query: 64  ELIESLPKLEIVA-TCSVGLDK---IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAV 119
           +L++ LPKL+I++ T  V  D    IDL  C +KG+ V           A+L   L++A 
Sbjct: 64  QLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVAP-AELTWALVMAA 122
Query: 120 LRRICESDRYVRSGEWKKGEFKMTTK---------FTGKSVGILGMGRIGTAIAKRAEAF 170
            RRI +    ++ G W++   K TT            G+++GI G G+IG  +A    AF
Sbjct: 123 QRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAF 182
Query: 171 DC---IIGYNSRTEKPNLN-YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALG 226
                + G  +  E+   + +    +   L     +L V   L +ET+ I+    +  + 
Sbjct: 183 GMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMK 242
Query: 227 PKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVP-EELIGLENVVLLPHVA 285
           P  + +N  R  LV+E+ +V+            DVFE EP +    L+ +EN +  PH+ 
Sbjct: 243 PTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIG 302
Query: 286 SATVET 291
               E+
Sbjct: 303 YVERES 308

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 12/246 (4%)
Query: 71  KLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYV 130
           +L+ V   S G+D + L   +  G+ VANT  +  D +++  +  +L+V+R    +    
Sbjct: 61  QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 131 RSGEWKKGEFKMTTK-FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYK 188
           R    ++    MTT   TG+ + I G G+IG ++A +A A    +IG N+ T  P  ++ 
Sbjct: 121 RGA--RQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNT-TGHPADHFH 177
Query: 189 ---YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
               +    D  +    +V A  LT  T H+ + ++      + +LINIGRG  VD   L
Sbjct: 178 ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTAL 237
Query: 246 VSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRKAMADLVVGNL 303
           ++            DV E EP +P +  L   ++V++ PH++      R  +  +   N 
Sbjct: 238 MTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANF 296
Query: 304 QAHFGK 309
            A F K
Sbjct: 297 -AQFVK 301

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 12/225 (5%)
Query: 65  LIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRIC 124
           L+    KL    +   G+D +  ARC+ +  ++ N   +    +++   G +L+++R++ 
Sbjct: 61  LLAKANKLSWFQSTYAGVDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLP 119
Query: 125 ESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT--EK 182
                 +   W+   ++      G+++ ILG G IG  IA   + F   +   SR+  E+
Sbjct: 120 LYREQQKQRLWQSHPYQ---GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRER 176
Query: 183 PNLNYKY-YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241
              +  Y  P L  + +   ++V     T ET H+          P  +L N+GRG  ++
Sbjct: 177 AGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 242 EHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPH 283
           E +L++            DVFE EP   D P  L G  N+++ PH
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSP--LWGQPNLIITPH 279

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 16/249 (6%)
Query: 72  LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVR 131
           ++ + T + G D ID    KE G  +A  P    + +A+LA+   + +LR    +     
Sbjct: 70  VKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTA 129
Query: 132 SGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKYY 190
              +K   F  + +    +VG++G+GRIG   A+        +IG +    K   +Y   
Sbjct: 130 KKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQ 189
Query: 191 PNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXX 250
            +L ++     I+ +     +E   +V R  +  +    +L+N  RG LVD   ++    
Sbjct: 190 VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE 249
Query: 251 XXXXXXXXXDVFEHEPDV-PEELIG--LEN------------VVLLPHVASATVETRKAM 295
                    DV + E  V  ++L G  LEN            V++ PH+ S T E  K M
Sbjct: 250 SGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNM 309
Query: 296 ADLVVGNLQ 304
            ++   NL+
Sbjct: 310 VEVSYQNLK 318

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 17/233 (7%)
Query: 79  SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG 138
           +VG+D ID+A+ KE G ++ N P    + +A+ A      +LR+    D  V   + +  
Sbjct: 78  NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 139 EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK--YYPNLIDL 196
              +  +   + VG++G G IG    +  E F   +        P L  K  Y  +L DL
Sbjct: 138 P-TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDL 196
Query: 197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXX 256
                ++ +         H++N + I  +    V++N+ RG LVD   ++          
Sbjct: 197 YKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFG 256
Query: 257 XXXDVFEHE-------------PDVP-EELIGLENVVLLPHVASATVETRKAM 295
              DV+E E             PD    +LI   NV++ PH A  T    + M
Sbjct: 257 YAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNM 309

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 17/233 (7%)
Query: 79  SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG 138
           +VG+D ID+A+ KE G ++ N P    + +A+ A      +LR+    D  V   + +  
Sbjct: 78  NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 139 EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK--YYPNLIDL 196
              +  +   + VG++G G IG    +  E F   +        P L  K  Y  +L DL
Sbjct: 138 P-TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDL 196
Query: 197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXX 256
                ++ +         H++N + I  +    V++N+ RG LVD   ++          
Sbjct: 197 YKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFG 256
Query: 257 XXXDVFEHE-------------PDVP-EELIGLENVVLLPHVASATVETRKAM 295
              DV+E E             PD    +LI   NV++ P  A  T    + M
Sbjct: 257 YAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNM 309

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 104/253 (41%), Gaps = 24/253 (9%)
Query: 79  SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYV--RSGEWK 136
           +VG+D ID+ + KE G ++ N P    + +A+ A      VLR+    D  +  R   W 
Sbjct: 78  NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLRWA 137
Query: 137 KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYK--YYPNL 193
                +  +   + VG++G G IG    +  E F   +I Y+   + P L  K  Y  +L
Sbjct: 138 P---TIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDI-FKNPELEKKGYYVDSL 193
Query: 194 IDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXX 253
            DL     ++ +         H++N + I  +    V++N  RG LVD   ++       
Sbjct: 194 DDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGK 253
Query: 254 XXXXXXDVFEHE----------PDVPE----ELIGLENVVLLPHVASATVET-RKAMADL 298
                 D +E E           + P+    +LI   NV++ PH A  T    R  +   
Sbjct: 254 IFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMVVKA 313
Query: 299 VVGNLQAHFGKKP 311
              NL+   G+KP
Sbjct: 314 FNNNLKLINGEKP 326

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 6/231 (2%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
           E +   P+L+ +   + GLD +         + VA       D VA+ A+ L+LA  +RI
Sbjct: 43  EELAKXPRLKFIQVVTAGLDHLPWESIPPH-VTVAGNAGSNADAVAEFALALLLAPYKRI 101
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
            +     + G++  G         G+ V +LG+G IGT + K   A    +   SRT K 
Sbjct: 102 IQYGEKXKRGDY--GRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE 159
Query: 184 NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEH 243
              +++  +L +     +  V A  L + T+ +V  Q +       V +N+GR  ++D  
Sbjct: 160 G-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRD 218
Query: 244 ELVSXXXXXXXXXXXXDVFEHEPDVPE--ELIGLENVVLLPHVASATVETR 292
            ++             DV+    D  +  E   L NVV  P VA      R
Sbjct: 219 GVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNER 269

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 8/216 (3%)
Query: 71  KLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYV 130
           + + +   S G+D ID+    E  +  +N     +  VA+ A  L+LA  + I E++   
Sbjct: 49  RTKXIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENNELX 107
Query: 131 RSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKY 189
           ++G +++     TT   GK++GILG G IG  +A  A+AF   +I Y   +   N++   
Sbjct: 108 KAGIFRQSP---TTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRSSVDQNVDV-I 163
Query: 190 YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXX 249
             +  DL      +++A  LT++T+  VN +++        ++N+ R  +V + + +   
Sbjct: 164 SESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFL 223
Query: 250 XXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVA 285
                     DV+ +EP++ E    L N +L PHVA
Sbjct: 224 KERSDVWYLSDVWWNEPEITE--TNLRNAILSPHVA 257

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 37/256 (14%)
Query: 65  LIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRIC 124
           L+   P +  V T + G D +D A  K+ GI  +  P      V +     + + L  + 
Sbjct: 56  LLSGTP-INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEY----VFSALLXLA 110
Query: 125 ESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD-----CIIGYNSR 179
           E D +                   +++GI+G+G +G+ +  R EA       C     +R
Sbjct: 111 ERDGF---------------SLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR 155
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIG 235
            ++ +     +  L +L     +L     L ++    T H+ +  +I  L P  +LIN  
Sbjct: 156 GDEGD-----FRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINAC 210
Query: 236 RGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENV-VLLPHVASATVETRKA 294
           RG +VD   L++            DV+E EPD+   L  LE V +   H+A  T+E +  
Sbjct: 211 RGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVAL--LEAVDIGTSHIAGYTLEGKAR 268
Query: 295 MADLVVGNLQAHFGKK 310
               V     A  G++
Sbjct: 269 GTTQVFEAYSAFIGRE 284

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 21/265 (7%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA----NTPDVLTDDVADLAIGLILAV 119
           E I+   KL++V    VG D IDL    + G +++       +V++  VA+  +  +L +
Sbjct: 77  ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVMTMLVL 134
Query: 120 LRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC--IIGY 176
           +R    +   + + +W+     K      GK++  +G GRIG  + +R   F+   ++ Y
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194
Query: 177 N----SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232
           +     +  +  +  +   N+ +L +   I+ V   L   T+ ++N+++++       L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254
Query: 233 NIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVP----EELIGLENVVLLPHVA 285
           N  RG +    ++ +            DV+  +P   D P        G  N  + PH +
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AMTPHYS 313
Query: 286 SATVETRKAMADLVVGNLQAHFGKK 310
             T++ +   A   V  L++ F  K
Sbjct: 314 GTTLDAQTRYAQGTVNILESFFTGK 338

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 9/184 (4%)
Query: 110 DLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEA 169
           + A+  +L   RR  +         WK        +F   SVGI G G +G  +A+  +A
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEF---SVGIXGAGVLGAKVAESLQA 160
Query: 170 FDCIIGYNSRTEKPNLNYKYY---PNLIDLASNCQILVVACSLTEETQHIVNRQVINALG 226
           +   +   SR+ K     + Y     L    +  ++L+     T +T  I+N ++++ L 
Sbjct: 161 WGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLP 220
Query: 227 PKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHV 284
               ++N+ RG+ V E +L++            DVF  EP +P+E  L     V   PH+
Sbjct: 221 DGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP-LPQESPLWRHPRVAXTPHI 279
Query: 285 ASAT 288
           A+ T
Sbjct: 280 AAVT 283

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 28/241 (11%)
Query: 80  VGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE-SDRYVRSGEWKKG 138
           VG + I+    K+  + V N P      +A++ +   + +LR+I E   R     ++   
Sbjct: 79  VGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWP 138
Query: 139 EFKMTTKFTGKSVGILGMGRIGTAIAK-------RAEAFDCIIGYNSRTEKPNLNYKYYP 191
              ++ +    +VG++G+G IG+A+A+       +  A+D  + YN   E P L Y  + 
Sbjct: 139 SNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYD--VAYNPEFE-PFLTYTDFD 195
Query: 192 NLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXX 251
            ++  A    I+ +   L   T++++  + +  +     LIN  RG LVD   L+     
Sbjct: 196 TVLKEA---DIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQD 252
Query: 252 XXXXXXXXDV-------FEH----EPDVPEE---LIGLENVVLLPHVASATVETRKAMAD 297
                   D        F H    + ++PE+   L  + NVV+ PH A  T  + + M  
Sbjct: 253 GEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQ 312
Query: 298 L 298
           +
Sbjct: 313 I 313

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 113/265 (42%), Gaps = 21/265 (7%)
Query: 64  ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA----NTPDVLTDDVADLAIGLILAV 119
           E I+   KL++V    VG D IDL    + G +++       +V++  VA+  +  +L +
Sbjct: 78  ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVMTMLVL 135
Query: 120 LRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC--IIGY 176
           +R    +   + + +W+     K      GK++  +G GRIG  + +R   F+   ++ Y
Sbjct: 136 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 195
Query: 177 N----SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232
           +     +  +  +  +   N+ +L +   I+ V   L   T+ ++N+++++       L+
Sbjct: 196 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 255
Query: 233 NIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVP----EELIGLENVVLLPHVA 285
           N  RG +    ++ +            DV+  +P   D P        G  N  + PH +
Sbjct: 256 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AMTPHYS 314
Query: 286 SATVETRKAMADLVVGNLQAHFGKK 310
             T++ +   A      L++ F  K
Sbjct: 315 GTTLDAQTRYAQGTKNILESFFTGK 339

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 19/221 (8%)
Query: 92  EKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSG-EWKKGEFKMTTKF-TGK 149
           ++GI V  T  V  + VA++ +G  LA+ R I ++D   + G E   GE   + +   G 
Sbjct: 118 QRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGS 177
Query: 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------NYKYYPNLIDLASNCQI 202
            +GI+G G +G A+ +    F   I    R   P L       N     +L D+ +    
Sbjct: 178 EIGIVGFGDLGKALRRVLSGFRARI----RVFDPWLPRSXLEENGVEPASLEDVLTKSDF 233
Query: 203 LVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVF 262
           + V  ++T E +  +  +  ++       I + R  +VD  + +             DV+
Sbjct: 234 IFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVD-FDALXAAVSSGHIVAASDVY 292
Query: 263 EHEP---DVPEELIGLENVVLLPHVASATVETRKAMADLVV 300
             EP   D P  +  L+  +   H A A     K   D V+
Sbjct: 293 PEEPLPLDHP--VRSLKGFIRSAHRAGALDSAFKKXGDXVL 331

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)
Query: 72  LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAV--LRRICESDRY 129
           +  V TC++G D +DL    E GI  ++ P      V D  +G +LA+  +R    ++R 
Sbjct: 59  VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERT 118
Query: 130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKY 189
                  +   ++     G    +L                  +     +  +P+  +  
Sbjct: 119 YGVVGAGQVGGRLVEVLRGLGWKVL------------------VCDPPRQAREPDGEFV- 159
Query: 190 YPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
             +L  L +   ++ +   L  +    T+H+++   + AL P   L+N  RG +VD   L
Sbjct: 160 --SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 246 VSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETR 292
                         DV+E EP    EL     ++  PH+A  ++E +
Sbjct: 218 RRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGK 263

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-165
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-159
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-128
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-118
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-112
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-112
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-111
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-110
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	1e-105
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-102
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	8e-91
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	4e-88
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	5e-86
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	1e-78
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	8e-78
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	6e-76
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	3e-74
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-72
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	3e-69
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	2e-68
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	1e-67
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	3e-66
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	5e-66
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	1e-65
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	4e-64
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	2e-63
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	4e-60
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	1e-58
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	6e-57
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	2e-54
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	2e-50
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	5e-50
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	1e-08

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  460 bits (1187), Expect = e-165
 Identities = 222/308 (72%), Positives = 264/308 (85%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
           VLM+CP+S YLEQE++K FK+F+ W    +  F+    +SI+AVVG++ AGADAELI++L
Sbjct: 26  VLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDAL 85

Query: 70  PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
           PKLEIV++ SVGLDK+DL +C+EKG+RV NTPDVLTDDVADLAIGLILAVLRRICE D+Y
Sbjct: 86  PKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKY 145

Query: 130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKY 189
           VR G WK G+FK+TTKF+GK VGI+G+GRIG A+A+RAEAFDC I Y SR++KPN NY Y
Sbjct: 146 VRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTY 205

Query: 190 YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL 249
           Y ++++LASN  ILVVAC LT ET HI+NR+VI+ALGPKGVLINIGRG  VDE ELVSAL
Sbjct: 206 YGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSAL 265

Query: 250 LQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGK 309
           ++GRLGGAGLDVFE EP+VPE+L GLENVVLLPHV S TVETRK MADLVVGNL+AHF  
Sbjct: 266 VEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSG 325

Query: 310 KPLLTPVV 317
           KPLLTPVV
Sbjct: 326 KPLLTPVV 333

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  446 bits (1150), Expect = e-159
 Identities = 127/308 (41%), Positives = 186/308 (60%), Gaps = 2/308 (0%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
           +L+V P+  ++  E+++++ V +L+   D+         SI+AV     AG   E +E L
Sbjct: 33  LLLVEPMMPFVMDELQRNYSVHRLYQAADRPALE-AALPSIRAVATGGGAGLSNEWMEKL 91

Query: 70  PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
           P L I+A   VG DK+DLAR + + I V  TP VL DDVADL I L+LAVLRR+ + DR 
Sbjct: 92  PSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL 151

Query: 130 VRSGEWKK-GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK 188
           VR G W    +  +     GK +G+LG+G+IG A+A RAEAF   + Y +R+    +++ 
Sbjct: 152 VREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWI 211

Query: 189 YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSA 248
            + + +DLA +  +L V  + +  TQ+IV+  ++ ALGP+G+++N+ RG +VDE  L+ A
Sbjct: 212 AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271

Query: 249 LLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFG 308
           L  G + GAGLDVF +EP +  E     N VL+PH  SATVETR AM  LV+ NL AHF 
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFA 331

Query: 309 KKPLLTPV 316
            +     V
Sbjct: 332 GEKAPNTV 339

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  367 bits (945), Expect = e-128
 Identities = 103/316 (32%), Positives = 157/316 (49%), Gaps = 11/316 (3%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFE---DKEQFINTHKDSIQAVVGSAAAGADAELI 66
             +    +  +E E+ + F + ++   +         +      + +  +A     AE+I
Sbjct: 31  AFLCRRFTPAIEAELRQRFDL-EVNLEDTVLTPSGIASRAHG-AEVLFVTATEAITAEVI 88

Query: 67  ESL-PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE 125
             L P L+ +AT SVG D ID+A  +  GI+V +TPDVL+D  A++A+ L+L   RR  E
Sbjct: 89  RKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYE 148

Query: 126 SDRYVRSGEWKK--GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
           +DR VRSG W        +    TG+ +GI GMGRIG AIA RA  F   I Y++RT   
Sbjct: 149 ADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLS 208

Query: 184 N---LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
           +       Y+  L  L     I ++A     E +  ++   I  +    V+INI RG L+
Sbjct: 209 HALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLI 268

Query: 241 DEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVV 300
           ++  L+ AL    L  AGLDVF +EP +      L+N+ L PH+ SAT ETR AM  L++
Sbjct: 269 NDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLI 328

Query: 301 GNLQAHFGKKPLLTPV 316
             ++A          +
Sbjct: 329 QGIEALNQSDVPDNLI 344

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  343 bits (883), Expect = e-118
 Identities = 86/334 (25%), Positives = 144/334 (43%), Gaps = 26/334 (7%)

Query: 9   IVLMVCPVSNYLEQEIEKSFKVF--KLWHFEDKEQFI----NTHKDSIQAVVGSAAAGA- 61
            VL++   + +L+       + F     +    + F            +A++  A     
Sbjct: 5   RVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGT 64

Query: 62  -----DAELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGL 115
                +A+LI  LP  L++ A    G D +DL    E+G+  AN+        +DLA+ L
Sbjct: 65  ESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYL 124

Query: 116 ILAVLRRICESDRYVRSGEWKKGEF------KMTTKFTGKSVGILGMGRIGTAIAKRA-E 168
           IL+V R    S+R  R+G+ +          K      G  +G +G+G I   IA++A  
Sbjct: 125 ILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVH 184

Query: 169 AFDCIIGYNSRTEKP-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN 223
                + Y             L  +   +L +LA     + V+    + T H+++     
Sbjct: 185 GLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFA 244

Query: 224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPH 283
           A+ P   ++N  RG ++ +  L++AL  G+L  AGLDV E EP V +ELI +++V L  H
Sbjct: 245 AMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTH 304

Query: 284 VASATVETRKAMADLVVGNLQAHF-GKKPLLTPV 316
           +    +ET      L + N+       KPLLTP 
Sbjct: 305 IGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  327 bits (840), Expect = e-112
 Identities = 132/319 (41%), Positives = 183/319 (57%), Gaps = 14/319 (4%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFE---DKEQFINTHKDSIQAVVGSAAAGADAELI 66
           V +   +     + +E  F+V ++W  E    +E  +   K+ + A+V   +   D E+ 
Sbjct: 5   VFITREIPEVGIKMLEDEFEV-EVWGDEKEIPREILLKKVKE-VDALVTMLSERIDKEVF 62

Query: 67  ESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES 126
           E+ PKL IVA  +VG D ID+    ++GI V NTPDVLTD  ADLA  L+LA  R + + 
Sbjct: 63  ENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKG 122

Query: 127 DRYVRSGEWKKGEFKMTTKF------TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT 180
           DR+VRSGEWKK       K+       GK++GI+G+GRIG AIAKRA+ F+  I Y SRT
Sbjct: 123 DRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRT 182

Query: 181 EKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
            K  +  +    +  L DL      +V+A  LT ET H++N + +  +    +LINI RG
Sbjct: 183 RKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARG 242

Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297
            +VD + LV AL +G + GAGLDVFE EP   EEL  L+NVVL PH+ SA+   R+ MA+
Sbjct: 243 KVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAE 302

Query: 298 LVVGNLQAHFGKKPLLTPV 316
           LV  NL A    +   T V
Sbjct: 303 LVAKNLIAFKRGEIPPTLV 321

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  326 bits (838), Expect = e-112
 Identities = 95/318 (29%), Positives = 153/318 (48%), Gaps = 13/318 (4%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLW---HFEDKEQFINTHKDSIQAVVGSAAAGADAELI 66
           +L+  P+         +S+ V            ++ I T K  + A++ +       E+I
Sbjct: 4   ILITWPLPEAAMARARESYDV-IAHGDDPKITIDEMIETAKS-VDALLITLNEKCRKEVI 61

Query: 67  ESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE 125
           + +P+ ++ ++T S+G D IDL  CK +GI+V N P  +T   A++A+ L+L   RR  E
Sbjct: 62  DRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGE 121

Query: 126 SDRYVRSGEWKK--GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
            ++ +R+  W        +  K   K++GI G G IG A+AKRA+ FD  I Y       
Sbjct: 122 GEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS 181

Query: 184 N-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL 238
           +         ++ +L  L S  Q   +    T ET++  N+  I +L    +++N  RG 
Sbjct: 182 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD 241

Query: 239 LVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADL 298
           LVD   +V+AL  GRL  AG DVF  EP++ E    L N  L PH+ SA  + R+ MA  
Sbjct: 242 LVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQ 301

Query: 299 VVGNLQAHFGKKPLLTPV 316
               + A FG   +   +
Sbjct: 302 ANDLIDALFGGADMSYAL 319

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  324 bits (833), Expect = e-111
 Identities = 110/283 (38%), Positives = 160/283 (56%), Gaps = 7/283 (2%)

Query: 38  DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
            K + +   +     ++ +     DAE+++    L+++A  SVG+D +DL   +E+GIRV
Sbjct: 33  PKAELLKRVEG-AVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRV 91

Query: 98  ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKK--GEFKMTTKFTGKSVGILG 155
            +TP VLT+  ADL + L+LAV RR+ E   Y R G WK    E  +     G ++G++G
Sbjct: 92  THTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVG 151

Query: 156 MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQH 215
           MGRIG A+AKRA AF   + Y++RT KP L Y +   L +L     ++ +   LT ET  
Sbjct: 152 MGRIGQAVAKRALAFGMRVVYHARTPKP-LPYPFLS-LEELLKEADVVSLHTPLTPETHR 209

Query: 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIG 274
           ++NR+ + A+    +L+N  RG LVD   LV A L+G L GAGLDV + EP  P   L  
Sbjct: 210 LLNRERLFAMKRGAILLNTARGALVDTEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYA 268

Query: 275 LENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317
           L N V+ PH+ SA   TR+ MA++ V NL A    +    PVV
Sbjct: 269 LPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPVV 311

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  321 bits (826), Expect = e-110
 Identities = 95/263 (36%), Positives = 147/263 (55%), Gaps = 8/263 (3%)

Query: 62  DAELIESL-PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVL 120
           D  ++++    L++++T SVG+D + L   K++GIRV  TPDVLTD  A+LA+ L+L   
Sbjct: 66  DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125

Query: 121 RRICESDRYVRSGEWKK--GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYN 177
           RR+ E+   V++G W      +      T  +VGI+G+GRIG AIA+R + F      Y 
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185

Query: 178 SRTEKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI 234
            R  +P    ++   + +  +LA+    +VVACSLT  T+ + N+     +    V INI
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245

Query: 235 GRGLLVDEHELVSALLQGRLGGAGLDVFEHEP-DVPEELIGLENVVLLPHVASATVETRK 293
            RG +V++ +L  AL  G++  AGLDV   EP      L+ L+N V+LPH+ SAT  TR 
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305

Query: 294 AMADLVVGNLQAHFGKKPLLTPV 316
            M+ L   NL A    +P+ + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSEL 328

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  309 bits (793), Expect = e-105
 Identities = 65/284 (22%), Positives = 115/284 (40%), Gaps = 8/284 (2%)

Query: 37  EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIR 96
           E ++ F       +  V  +  +   AE +  +P+L+ +   + GLD +         + 
Sbjct: 16  ELRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVT 74

Query: 97  VANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGM 156
           VA       D VA+ A+ L+LA  +RI +    ++ G++ +          G+ V +LG+
Sbjct: 75  VAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGL 132

Query: 157 GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHI 216
           G IGT + K   A    +   SRT K    +++  +L +     +  V A  L + T+ +
Sbjct: 133 GEIGTRVGKILAALGAQVRGFSRTPKEGP-WRFTNSLEEALREARAAVCALPLNKHTRGL 191

Query: 217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE--ELIG 274
           V  Q +  +    V +N+GR  ++D   ++  L +        DV+    D  +  E   
Sbjct: 192 VKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFS 251

Query: 275 LENVVLLPHVASATVETR--KAMADLVVGNLQAHFGKKPLLTPV 316
           L NVV  P VA      R  + M    V NL  +          
Sbjct: 252 LPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIA 295

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  301 bits (774), Expect = e-102
 Identities = 76/292 (26%), Positives = 142/292 (48%), Gaps = 14/292 (4%)

Query: 38  DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
            +E+ +   +D  QA++       DA+ +++ P+L ++     G D  D+  C  +G+ +
Sbjct: 35  TREEILRRCRD-AQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWL 93

Query: 98  ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMT-TKFTGKSVGILGM 156
              PD+LT   A+LAIGL + + R +  +D +VRSG+++  + +   T     +VG LGM
Sbjct: 94  TFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGM 153

Query: 157 GRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKY---YPNLIDLASNCQILVVACSLTEE 212
           G IG A+A R + +   +  + ++        +         +L ++   +++A  L  +
Sbjct: 154 GAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNAD 213

Query: 213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHE------- 265
           T H+VN +++  + P  +L+N  RG +VDE  +++AL +G+LGG   DVFE E       
Sbjct: 214 TLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADR 273

Query: 266 -PDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
              +   L+   N +  PH+ SA    R  +      N+      +  +  V
Sbjct: 274 PQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 325

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  272 bits (699), Expect = 8e-91
 Identities = 99/318 (31%), Positives = 157/318 (49%), Gaps = 16/318 (5%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
           V ++  +     +E++K   V ++  +   E+           ++ S       E++E+ 
Sbjct: 5   VGVLLKMKREALEELKKYADV-EIILYPSGEELKGVIGR-FDGIIVSPTTKITREVLENA 62

Query: 70  PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
            +L++++  S G D IDL    ++GI V     +L++ VA+  +GLI+ ++R+I  +D++
Sbjct: 63  ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF 122

Query: 130 VRSGEWKKGEFKMTTKF-----TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP- 183
           +R GEW+      T         GK VGILGMG IG AIA+R   F   + Y SR  K  
Sbjct: 123 IRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVN 182

Query: 184 ---NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV-LINIGRGLL 239
               L  +Y   + +L     I+++A  LT +T HI+N + +  L  +G  L+NIGRG L
Sbjct: 183 VEKELKARYMD-IDELLEKSDIVILALPLTRDTYHIINEERVKKL--EGKYLVNIGRGAL 239

Query: 240 VDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLE-NVVLLPHVASATVETRKAMADL 298
           VDE  +  A+ QG+L G   DVFE EP    EL   E   VL PH A   +E ++ +   
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR 299

Query: 299 VVGNLQAHFGKKPLLTPV 316
            V NL      +     V
Sbjct: 300 AVENLLKVLRGEVPEDLV 317

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  268 bits (686), Expect = 4e-88
 Identities = 65/288 (22%), Positives = 114/288 (39%), Gaps = 8/288 (2%)

Query: 38  DKEQFINTHKDSIQAVVGSAAAGA-DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIR 96
               F     D+   +           E I     L++  T  +G D +DL    ++ + 
Sbjct: 79  PDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVT 138

Query: 97  VANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMT-TKFTGKSVGILG 155
           VA      +  VA+  + +IL+++R    S  + R G W   +            VG + 
Sbjct: 139 VAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVA 198

Query: 156 MGRIGTAIAKRAEAFDCIIGYNSRTEKP-----NLNYKYYPNLIDLASNCQILVVACSLT 210
            GRIG A+ +R   FD  + Y  R   P      LN  ++    D+   C ++ + C L 
Sbjct: 199 AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLH 258

Query: 211 EETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE 270
            ET+H++N + +        ++N  RG L D   +  AL  GRL G   DV+  +P   +
Sbjct: 259 PETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKD 318

Query: 271 -ELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317
                +    + PH++  T+  +   A      L+  F  +P+    +
Sbjct: 319 HPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYL 366

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  260 bits (667), Expect = 5e-86
 Identities = 77/314 (24%), Positives = 136/314 (43%), Gaps = 11/314 (3%)

Query: 9   IVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIES 68
           +VLM         Q+++ ++     W F+D         D I+ + G+        L   
Sbjct: 3   LVLMAQATKPEQLQQLQTTYPD---WTFKDAAAVTAADYDQIEVMYGNHPL-LKTILARP 58

Query: 69  LPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDR 128
             +L+ V   S G+D + L   +  G+ VANT  +  D +++  +  +L+V+R    +  
Sbjct: 59  TNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWL 118

Query: 129 YVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN-SRTEKPNLN 186
             R           +T  TG+ + I G G+IG ++A +A A    +IG N +     + +
Sbjct: 119 NQRGARQWALPMTTST-LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH 177

Query: 187 YKY-YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
               +    D  +    +V A  LT  T H+ + ++      + +LINIGRG  VD   L
Sbjct: 178 ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTAL 237

Query: 246 VSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRKAMADLVVGNL 303
           ++AL   +L  A LDV E EP +P +  L   ++V++ PH++      R  +  +   N 
Sbjct: 238 MTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANF 296

Query: 304 QAHFGKKPLLTPVV 317
                   L+   V
Sbjct: 297 AQFVKDGTLVRNQV 310

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  242 bits (620), Expect = 1e-78
 Identities = 76/319 (23%), Positives = 130/319 (40%), Gaps = 12/319 (3%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
           V ++      +E  I K          +  ++      +     +         E +E  
Sbjct: 24  VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF 83

Query: 70  PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
             L I+     G D ID+    + GI V N P    ++ AD  +  IL + RR     + 
Sbjct: 84  KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA 143

Query: 130 VRSGEWKKGEFKMTTKF------TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SR 179
           +R G   +   ++           G+++GI+G+GR+G A+A RA+AF   ++ Y+   S 
Sbjct: 144 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD 203

Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
             +  L  +    L DL  +   + + C L E   H++N   +  +     L+N  RG L
Sbjct: 204 GVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 263

Query: 240 VDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRKAMAD 297
           VDE  L  AL +GR+ GA LDV E EP    +  L    N++  PH A  + +    M +
Sbjct: 264 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMRE 323

Query: 298 LVVGNLQAHFGKKPLLTPV 316
                ++     +   +  
Sbjct: 324 EAAREIRRAITGRIPDSLK 342

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  238 bits (609), Expect = 8e-78
 Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 10/258 (3%)

Query: 57  AAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLI 116
           A A    +      + +++   S G+D ID+    E  +  +N     +  VA+ A  L+
Sbjct: 35  AEAQVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALL 93

Query: 117 LAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIG 175
           LA  + I E++  +++G +++     TT   GK++GILG G IG  +A  A+AF   +I 
Sbjct: 94  LAHAKNILENNELMKAGIFRQ---SPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIA 150

Query: 176 YNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
           Y   +   N++        DL      +++A  LT++T+ +VN +++        ++N+ 
Sbjct: 151 YTRSSVDQNVDVISES-PADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVA 209

Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVE-TRKA 294
           R  +V + +++  L +        DV+ +EP++ E    L N +L PHVA          
Sbjct: 210 RADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITET--NLRNAILSPHVAGGMSGEIMDI 267

Query: 295 MADLVVGNLQAHF-GKKP 311
              L   N++  F G+  
Sbjct: 268 AIQLAFENVRNFFEGEGH 285

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  235 bits (602), Expect = 6e-76
 Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 7/263 (2%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
            AE I+    L+++ T  +G D IDL      G+ VA         VA+  +  IL ++R
Sbjct: 77  TAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMR 136

Query: 122 RICESDRYVRSGEW-KKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179
                   V  GEW   G         GK++G +G GRIG  + +R + F C ++ ++  
Sbjct: 137 NFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 196

Query: 180 TEKP----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
              P        K+  +L ++   C ++V+   LTE+T+ + N+++I  L    +++N  
Sbjct: 197 QMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256

Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKA 294
           RG +++   +V A+  G +GG   DV++ +P   +     + N  + PH +  T++ +  
Sbjct: 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 316

Query: 295 MADLVVGNLQAHFGKKPLLTPVV 317
            A      L+ +F  +   T   
Sbjct: 317 YAAGTKDMLERYFKGEDFPTENY 339

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  225 bits (577), Expect = 1e-72
 Identities = 95/247 (38%), Positives = 139/247 (56%), Gaps = 7/247 (2%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
              +IES PKL+++A   VGLD ID+   KEKGI V N P   +  VA+LA+GL+ +V R
Sbjct: 57  TRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVAR 116

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN--- 177
           +I  +DR +R G W K E  M  +  GK++GI+G GRIG  +AK A A    I+ Y+   
Sbjct: 117 KIAFADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP 175

Query: 178 SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
           +      +N K+   L  L     ++ +   L E T H++N + +  +    +LIN  RG
Sbjct: 176 NEERAKEVNGKFVD-LETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRG 234

Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKAMA 296
            +VD + LV AL +G + GAGLDVFE EP   +  L   +NVVL PH+ ++TVE ++   
Sbjct: 235 PVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAG 294

Query: 297 DLVVGNL 303
             V   +
Sbjct: 295 VEVAEKV 301

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  219 bits (559), Expect = 3e-69
 Identities = 61/270 (22%), Positives = 113/270 (41%), Gaps = 15/270 (5%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKG--IRVANTPDVLTDDVADLAIGLILAV 119
             E I+   KL++V    VG D IDL    + G  I V          VA+  +  +L +
Sbjct: 75  TKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVL 134

Query: 120 LRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN 177
           +R    +   + + +W+     K      GK++  +G GRIG  + +R   F+   + Y 
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194

Query: 178 SRTEKP-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232
                P      +  +   N+ +L +   I+ V   L   T+ ++N+++++       L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254

Query: 233 NIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENV-----VLLPHVAS 286
           N  RG +    ++ +AL  G+L G G DV+  +P   +     + N       + PH + 
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSG 314

Query: 287 ATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
            T++ +   A   V  L++ F  K    P 
Sbjct: 315 TTLDAQTRYAQGTVNILESFFTGKFDYRPQ 344

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  215 bits (550), Expect = 2e-68
 Identities = 68/285 (23%), Positives = 115/285 (40%), Gaps = 21/285 (7%)

Query: 51  QAVVGSAAAGADAELIESLPK--LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDV 108
             VV        AE +++L    +  ++  +VG+D ID+A+ KE G ++ N P    + +
Sbjct: 48  DGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAI 107

Query: 109 ADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAE 168
           A+ A      +LR+    D  V   + +     +  +   + VG++G G IG    +  E
Sbjct: 108 AEHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIME 166

Query: 169 AFDC-IIGYNSRTEKPNLNY--KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225
            F   +I Y      P L     Y  +L DL     ++ +         H++N + I  +
Sbjct: 167 GFGAKVITY-DIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 225

Query: 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP--------------DVPEE 271
               V++N+ RG LVD   ++  L  G++ G  +DV+E E                   +
Sbjct: 226 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 285

Query: 272 LIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
           LI   NV++ P  A  T    + M      N       K   TPV
Sbjct: 286 LIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  214 bits (547), Expect = 1e-67
 Identities = 69/268 (25%), Positives = 119/268 (44%), Gaps = 19/268 (7%)

Query: 62  DAELIESLPKLEIVATCSV----GLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLIL 117
             +L++ LPKL+I++            IDL  C +KG+ V           A+L   L++
Sbjct: 62  TRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVM 120

Query: 118 AVLRRICESDRYVRSGEWKKGEFKMTTKFT---------GKSVGILGMGRIGTAIAKRAE 168
           A  RRI +    ++ G W++   K TT            G+++GI G G+IG  +A    
Sbjct: 121 AAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR 180

Query: 169 AFDC-IIGYN---SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA 224
           AF   ++ +    S+       +    +   L     +L V   L +ET+ I+    +  
Sbjct: 181 AFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTR 240

Query: 225 LGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE-LIGLENVVLLPH 283
           + P  + +N  R  LV+E+ +V+AL +GR G A +DVFE EP +    L+ +EN +  PH
Sbjct: 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300

Query: 284 VASATVETRKAMADLVVGNLQAHFGKKP 311
           +     E+ +    +   N+        
Sbjct: 301 IGYVERESYEMYFGIAFQNILDILQGNV 328

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  215 bits (550), Expect = 3e-66
 Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 7/283 (2%)

Query: 38  DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
           D+++ +    ++   +V SA    DAE++ + PKL+IVA   VGLD +D+     +G+ V
Sbjct: 34  DRDKLLAAVPEADALLVRSATT-VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV 92

Query: 98  ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMG 157
            N P       A+ A+ L+LA  R+I  +D  +R   WK+  F   T+  GK+VG++G+G
Sbjct: 93  VNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF-SGTEIFGKTVGVVGLG 151

Query: 158 RIGTAIAKRAEAFDC-IIGYN---SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEET 213
           RIG  +A+R  AF   ++ Y+   S      L  +    L DL +    + V    T ET
Sbjct: 152 RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLS-LDDLLARADFISVHLPKTPET 210

Query: 214 QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELI 273
             +++++ +    P  +++N  RG LVDE  L  A+  G +  AGLDVF  EP     L 
Sbjct: 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLF 270

Query: 274 GLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
            L  VV+ PH+ ++T E +      V  +++     + +   V
Sbjct: 271 ELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAV 313

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  209 bits (535), Expect = 5e-66
 Identities = 79/255 (30%), Positives = 129/255 (50%), Gaps = 6/255 (2%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
            A++I +  KL++V     G+D +DL     KGI V NTP+  +   A+L  G+I+ + R
Sbjct: 80  TADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLAR 139

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN--- 177
           +I ++   ++ G+W++ +F M T+  GK++GILG+GRIG  +A R ++F    IGY+   
Sbjct: 140 QIPQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII 198

Query: 178 SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
           S     +   +  P L ++   C  + V   L   T  ++N            ++N  RG
Sbjct: 199 SPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARG 257

Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297
            +VDE  L+ AL  G+  GA LDVF  EP     L+  ENV+  PH+ ++T E +    +
Sbjct: 258 GIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGE 317

Query: 298 LVVGNLQAHFGKKPL 312
            +          K L
Sbjct: 318 EIAVQFVDMVKGKSL 332

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  208 bits (531), Expect = 1e-65
 Identities = 68/259 (26%), Positives = 131/259 (50%), Gaps = 11/259 (4%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
             ++IE   KL+I+A   +GLD ID    +++ I+V   P   TD   +L IGL++A  R
Sbjct: 59  TKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAAR 118

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN--- 177
           ++  S    +SG +KK       +  GK++GI+G GRIGT +   A A    ++ Y+   
Sbjct: 119 KMYTSMALAKSGIFKK---IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD 175

Query: 178 SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
            R +   +N K    L +L  N  ++ +  +++++ + I++      +    +++N  R 
Sbjct: 176 IREKAEKINAKAVS-LEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234

Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
           + V+   L+  + +G++     DVF +EP   +   EL+  E V++  H+ + T E +K 
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294

Query: 295 MADLVVGNLQAHFGKKPLL 313
           +A++   NL     +  ++
Sbjct: 295 VAEMTTQNLLNAMKELGMI 313

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  204 bits (521), Expect = 4e-64
 Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 18/284 (6%)

Query: 51  QAVVGSAAAGADAELIESLPKLEI--VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDV 108
            AV+      A+ + ++   KL +  + T + G D ID    KE G  +A  P    + +
Sbjct: 47  DAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAI 106

Query: 109 ADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAE 168
           A+LA+   + +LR    +        +K   F  + +    +VG++G+GRIG   A+   
Sbjct: 107 AELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFH 166

Query: 169 AFDC-IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
                +IG +    K   +Y    +L ++     I+ +     +E   +V R  +  +  
Sbjct: 167 GMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKD 226

Query: 228 KGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE---------------L 272
             +L+N  RG LVD   ++ A+  G+LGG G DV + E  V  +               +
Sbjct: 227 GAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLV 286

Query: 273 IGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
                V++ PH+ S T E  K M ++   NL+           +
Sbjct: 287 DLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  202 bits (517), Expect = 2e-63
 Identities = 71/283 (25%), Positives = 127/283 (44%), Gaps = 17/283 (6%)

Query: 51  QAVVGSAAAGADAELIESL--PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDV 108
             +         A + E +    ++ +   +VG D ID+   K+ GIR++N P      +
Sbjct: 46  DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105

Query: 109 ADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAE 168
           A+ A+   L +LR + +    +++G+++K    +  +   ++VG++G G IG    K  +
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFK 165

Query: 169 AFDC-IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
            F   +I Y+    K +     Y +L DL     ++ +     E+  HI+N    N + P
Sbjct: 166 GFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP 225

Query: 228 KGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP--------------DVPEELI 273
             ++IN  R  L+D   ++S L  G+L G G+D +E+E                + +EL+
Sbjct: 226 GAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELL 285

Query: 274 GLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
           G+ NVVL PH+A  T      M    + +L     K    T V
Sbjct: 286 GMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEV 328

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  194 bits (494), Expect = 4e-60
 Identities = 67/318 (21%), Positives = 134/318 (42%), Gaps = 17/318 (5%)

Query: 5   SNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAE 64
           S   ++L+    ++Y            ++   +++        +   A +  A       
Sbjct: 4   SQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGE---AHILMAEPARAKP 60

Query: 65  LIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRIC 124
           L+    KL    +   G+D + L     +  ++ N   +    +++   G +L+++R++ 
Sbjct: 61  LLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLP 119

Query: 125 ESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP 183
                 +   W+           G+++ ILG G IG  IA   + F   ++G + R+ + 
Sbjct: 120 LYREQQKQRLWQSHP---YQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVS-RSGRE 175

Query: 184 NLNY-KYYP--NLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
              + + Y    L  + +   ++V     T ET H+          P  +L N+GRG  +
Sbjct: 176 RAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAI 235

Query: 241 DEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRKAMADL 298
           +E +L++AL  G+LG A LDVFE EP +P +  L G  N+++ PH ++ +      +A +
Sbjct: 236 NEGDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYS--FPDDVAQI 292

Query: 299 VVGNLQAHFGKKPLLTPV 316
            V N       +PL   +
Sbjct: 293 FVRNYIRFIDGQPLDGKI 310

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  192 bits (490), Expect = 1e-58
 Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 7/235 (2%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
             ++I +  KL  +   ++G +++DL    ++GI V N P   T  VA+L IG +L +LR
Sbjct: 60  TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLR 119

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180
            + E++     G   K     + +  GK +GI+G G IGT +   AE+    +  Y+   
Sbjct: 120 GVPEANAKAHRGVGNKLAA-GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN 178

Query: 181 EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
           + P  N     +L DL +   ++ +       T++++  + I+ + P  +LIN  RG +V
Sbjct: 179 KLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV 238

Query: 241 DEHELVSALLQGRLGGAGLDVFEHEPDVPEE-----LIGLENVVLLPHVASATVE 290
           D   L  AL    L GA +DVF  EP    +     L   +NV+L PH+  +T E
Sbjct: 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQE 293

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  188 bits (480), Expect = 6e-57
 Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 7/235 (2%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
             E+  +  +L  V   SVG ++++L   +++GI V N P   T  VA+L IG I+ ++R
Sbjct: 71  TEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMR 130

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180
           RI        +G W+K     + +  GK++GI+G G IG+ +   AE+    +  Y++  
Sbjct: 131 RIFPRSVSAHAGGWEKTAI-GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD 189

Query: 181 EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
           +    N K   +L +L     ++ +    ++ T  ++    +  +     LIN  RG  V
Sbjct: 190 KLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249

Query: 241 DEHELVSALLQGRLGGAGLDVFEHEPDVPEE-----LIGLENVVLLPHVASATVE 290
           D   L   L +G L GA +DVF  EP    E     L GLENV+L PH+  +T E
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEE 304

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  179 bits (455), Expect = 2e-54
 Identities = 63/272 (23%), Positives = 113/272 (41%), Gaps = 19/272 (6%)

Query: 57  AAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTP------DVLTDDVAD 110
           A        + +  +L+ V     G+D I         +  A+ P        +   + +
Sbjct: 45  ALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQE 104

Query: 111 LAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF 170
            A+  +L   RR  +         WK             SVGI+G G +G  +A+  +A+
Sbjct: 105 YAVSQVLHWFRRFDDYQALKNQALWKPLP---EYTREEFSVGIMGAGVLGAKVAESLQAW 161

Query: 171 DC-IIGYNSRTEKPNLNYKYY---PNLIDLASNCQILVVACSLTEETQHIVNRQVINALG 226
              +  + SR+ K     + Y     L    +  ++L+     T +T  I+N ++++ L 
Sbjct: 162 GFPLRCW-SRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLP 220

Query: 227 PKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHV 284
               ++N+ RG+ V E +L++AL  G+L GA LDVF  EP +P+E  L     V + PH+
Sbjct: 221 DGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRVAMTPHI 279

Query: 285 ASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
           A+ T        D +   +      +P+   V
Sbjct: 280 AAVT--RPAEAIDYISRTITQLEKGEPVTGQV 309

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  170 bits (432), Expect = 2e-50
 Identities = 56/254 (22%), Positives = 98/254 (38%), Gaps = 25/254 (9%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
           +  L+     +  V T + G D +D A  K+ GI  +  P      V +     +L +  
Sbjct: 53  NESLLSG-TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE 111

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE 181
           R                          +++GI+G+G +G+ +  R EA            
Sbjct: 112 R-------------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR 152

Query: 182 KPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGRG 237
               +   +  L +L     +L     L ++    T H+ +  +I  L P  +LIN  RG
Sbjct: 153 AARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212

Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297
            +VD   L++ L  G+     LDV+E EPD+   L+   ++    H+A  T+E +     
Sbjct: 213 PVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIG-TSHIAGYTLEGKARGTT 271

Query: 298 LVVGNLQAHFGKKP 311
            V     A  G++ 
Sbjct: 272 QVFEAYSAFIGREQ 285

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  169 bits (430), Expect = 5e-50
 Identities = 51/255 (20%), Positives = 96/255 (37%), Gaps = 27/255 (10%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
               +     +  V TC++G D +DL    E GI  ++ P      V D  +G +LA+  
Sbjct: 50  SRAALAG-SPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE 108

Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180
                                      ++ G++G G++G  + +        ++  +   
Sbjct: 109 V-------------------RGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR 149

Query: 181 EKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGR 236
           +    + ++   L  L +   ++ +   L  +    T+H+++   + AL P   L+N  R
Sbjct: 150 QAREPDGEFVS-LERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASR 208

Query: 237 GLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMA 296
           G +VD   L   L  G      LDV+E EP    EL     ++  PH+A  ++E +    
Sbjct: 209 GAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIAGYSLEGKLRGT 267

Query: 297 DLVVGNLQAHFGKKP 311
             +     A  G   
Sbjct: 268 AQIYQAYCAWRGIAE 282

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-------NLNYKYYPNLIDLASNC 200
           G +V +LG+GR+G ++A++  A    +   +R            +   +         + 
Sbjct: 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDV 214

Query: 201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
            + +           +V   V+  +     +I++   
Sbjct: 215 DVCINTI-----PALVVTANVLAEMPSHTFVIDLASK 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.94
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.9
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.82
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.81
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.77
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.72
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.7
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.67
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.65
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.61
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.42
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.42
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.34
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.33
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.33
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.32
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.31
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.3
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.28
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.25
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.25
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.22
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.22
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.22
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.2
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.2
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.19
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.18
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.17
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.15
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.1
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.08
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.08
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.06
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.06
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.04
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.03
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.03
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.02
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.01
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.01
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.99
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.98
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.98
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.97
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.95
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.95
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.9
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.9
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.9
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.89
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.89
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.88
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.37
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.85
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.84
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.83
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.81
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.8
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.78
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.76
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.72
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.7
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.7
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.66
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.64
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.63
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.63
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.59
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.58
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.58
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.56
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.56
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.56
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.53
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.49
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.47
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.47
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.46
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.46
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.45
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.44
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.44
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.44
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.43
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.42
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.42
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.42
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.42
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.41
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.38
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.38
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.38
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.37
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.36
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.35
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.35
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.35
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.34
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.33
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.33
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.33
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.3
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.29
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.27
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.27
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.26
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.26
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.24
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.24
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.21
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.21
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.11
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.09
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.05
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.01
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.0
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.97
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.96
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.95
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.94
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.92
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.88
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.82
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.8
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.8
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.79
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.76
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.75
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.75
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.73
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.72
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.69
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.69
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.68
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.64
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.64
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.63
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.61
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.6
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.59
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.59
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.54
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.52
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.51
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.5
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.5
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.47
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.4
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.38
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.37
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.32
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.3
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.3
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.29
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.26
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.26
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.26
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.22
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.21
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.2
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.2
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.17
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.16
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.15
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.14
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.14
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.13
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.07
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.06
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.05
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.05
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.03
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.03
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.02
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.01
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.0
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.0
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.98
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.96
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.96
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.96
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.94
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.94
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.93
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.89
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.88
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.88
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.88
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.88
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.84
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.84
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.83
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.8
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.79
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.77
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.76
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.75
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.75
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.69
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.69
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.69
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.66
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.65
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.64
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.64
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.63
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.63
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.61
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.6
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.6
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.57
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.57
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.56
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.56
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.55
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.55
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.53
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.53
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.52
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.49
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.49
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.48
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.46
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.46
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.46
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.46
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.44
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.43
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.41
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.4
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.39
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.39
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.36
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.32
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.32
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.32
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.31
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.3
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.29
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.25
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.25
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.23
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.23
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.23
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.22
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.22
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.22
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.21
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.18
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.17
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.15
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.15
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.14
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.12
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.12
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.07
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.06
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.06
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.05
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.04
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.04
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.02
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.01
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.01
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.0
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.98
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	95.96
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.95
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	95.95
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	95.92
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.9
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.88
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.85
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	95.85
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	95.84
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.84
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.84
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.84
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.83
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.79
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.78
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.77
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	95.74
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	95.74
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.74
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.74
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.73
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.67
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	95.67
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.66
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	95.66
4had_A	350	Probable oxidoreductase protein; structural genomi	95.64
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.62
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.61
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.61
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.59
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.58
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.56
3on5_A	362	BH1974 protein; structural genomics, joint center	95.56
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.55
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.55
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.55
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	95.52
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	95.51
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.51
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.5
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.46
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.46
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.45
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.45
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.45
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.44
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.42
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.41
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.4
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.39
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.39
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.38
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.38
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.35
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.28
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.27
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.27
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.24
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.24
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.24
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.24
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.24
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.23
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.23
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.23
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.21
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.19
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.17
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.16
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.13
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.11
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.11
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.1
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.08
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.08
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.04
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.04
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.04
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.03
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.02
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.02
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.01
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.0
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.0
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	95.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	94.99
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.98
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.98
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.98
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.93
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	94.9
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.9
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.9
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	94.85
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.85
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.81
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.78
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.71
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.71
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	94.7
2csu_A	457	457AA long hypothetical protein; structural genomi	94.7
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.66
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	94.66
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	94.64
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.63
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.62
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.61
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	94.61
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	94.6
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.56
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.54
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	94.53
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.53
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	94.51
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.49
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	94.49
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.45
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.45
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	94.45
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.42
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	94.42
4h3v_A	390	Oxidoreductase domain protein; structural genomics	94.41
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	94.4
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.39
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	94.39
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.38
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	94.38
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.37
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.33
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	94.33
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.33
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.31
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	94.31
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	94.27
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.22
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.19
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	94.16
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.16
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	94.14
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	94.14
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.12
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	94.12
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	94.05
1lnq_A	336	MTHK channels, potassium channel related protein;	94.02
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.01
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	94.0
3npg_A	249	Uncharacterized DUF364 family protein; protein wit	93.99
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.98
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	93.97
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.96
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.94
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	93.9
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	93.89
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.87
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.86
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	93.86
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	93.86
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.85
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.83
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.8
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.76
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	93.74
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	93.73
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.72
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	93.71
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	93.71
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	93.69
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.68
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	93.66
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	93.57
3l5o_A	270	Uncharacterized protein from DUF364 family; RARE m	93.56
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.55
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.53
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	93.48
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.39
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.38
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	93.38
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	93.38
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.32
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.32
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	93.31
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.3
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.3
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	93.29
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	93.21
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	93.17
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	93.15
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.1
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	93.09
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.05
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.05
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	93.04
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.04
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.03

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=7.2e-75  Score=546.77  Aligned_cols=314  Identities=41%  Similarity=0.678  Sum_probs=258.2

Q ss_pred             CCCCCcEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCC
Q 042102            3 NNSNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGL   82 (317)
Q Consensus         3 ~~~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   82 (317)
                      .+++||+||+++++.++..+.|++.|+++......+.++++.+. +++|++++++..++++++++++|+||+|+++|+|+
T Consensus        26 ~~~~~~~vl~~~~~~~~~~~~L~~~~~v~~~~~~~~~~~~~~~~-~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~  104 (340)
T 4dgs_A           26 FRNVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAAL-PSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGT  104 (340)
T ss_dssp             -------CEECSCCCHHHHHTHHHHSCCEETTCGGGHHHHHHHG-GGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHhcCCcEEEeCCCCCHHHHHHHh-CCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCc
Confidence            34578999999999999999999999887643322244455544 88999999887899999999999999999999999


Q ss_pred             CcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccC-cccccccccCCeEEEEecChhHH
Q 042102           83 DKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG-EFKMTTKFTGKSVGILGMGRIGT  161 (317)
Q Consensus        83 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~-~~~~~~~l~g~~vgIiG~G~iG~  161 (317)
                      ||||+++|+++||.|+|+||+++++||||+++++|+++|+++++++.+++|.|.+. .++.+.+++|+||||||+|.||+
T Consensus       105 d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~  184 (340)
T 4dgs_A          105 DKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGR  184 (340)
T ss_dssp             TTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHH
T ss_pred             cccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999853 33457899999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          162 AIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       162 ~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      .+|+++++|||+|++|++++....+.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|
T Consensus       185 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvd  264 (340)
T 4dgs_A          185 ALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVD  264 (340)
T ss_dssp             HHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC----
T ss_pred             HHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccC
Confidence            99999999999999999987665555556799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          242 EHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       242 ~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      +++|+++|++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++.+.+++||.+|++|+++.+.||
T Consensus       265 e~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          265 EDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             ----------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCCTTBC-
T ss_pred             HHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            9999999999999999999999999988899999999999999999999999999999999999999999999986

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=2.9e-73  Score=536.77  Aligned_cols=313  Identities=33%  Similarity=0.467  Sum_probs=284.9

Q ss_pred             CCCcEEEEeCCCChhHHHHHHhcCeEEEecC-CCChHHHHhhccCCceEEEEeCCCCCCHHHHhcC-CCceEEEECCCCC
Q 042102            5 SNNIIVLMVCPVSNYLEQEIEKSFKVFKLWH-FEDKEQFINTHKDSIQAVVGSAAAGADAELIESL-PKLEIVATCSVGL   82 (317)
Q Consensus         5 ~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~   82 (317)
                      ++|||||+++++.++..+.|++.|++..... .+..++.+.+.++++|++++++..++++++++++ |+||+|+++|+|+
T Consensus        26 ~~~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~G~  105 (345)
T 4g2n_A           26 HPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGY  105 (345)
T ss_dssp             -CCCEEEESSCCCHHHHHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSSCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCCcc
Confidence            4689999999999999999999998875432 2224555666789999999887789999999997 7999999999999


Q ss_pred             CcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc--ccccccccCCeEEEEecChhH
Q 042102           83 DKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE--FKMTTKFTGKSVGILGMGRIG  160 (317)
Q Consensus        83 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~--~~~~~~l~g~~vgIiG~G~iG  160 (317)
                      |+||+++|+++||.|+|+||+++++||||+++++|++.|++.++++.+++|.|....  ...+.+++|+||||||+|.||
T Consensus       106 D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG  185 (345)
T 4g2n_A          106 DHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIG  185 (345)
T ss_dssp             TTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHH
T ss_pred             cccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhH
Confidence            999999999999999999999999999999999999999999999999999997421  235789999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCC---CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          161 TAIAKRAEAFDCIIGYNSRTEKPN---LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       161 ~~~a~~l~~~G~~V~~~~~~~~~~---~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      +.+|+++++|||+|++||++....   .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||
T Consensus       186 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG  265 (345)
T 4g2n_A          186 RAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRG  265 (345)
T ss_dssp             HHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred             HHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCC
Confidence            999999999999999999976432   23444568999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       238 ~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      ++||+++|+++|++|+|+||+||||++||..++|||++|||++|||+||+|.+++.++.+.+++||.+|++|+++.|.|.
T Consensus       266 ~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~~~~V~  345 (345)
T 4g2n_A          266 DLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVPDNLIS  345 (345)
T ss_dssp             GGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             chhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999999999656799999999999999999999999999999999999999999999874

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=6.5e-71  Score=519.06  Aligned_cols=311  Identities=26%  Similarity=0.410  Sum_probs=282.5

Q ss_pred             CCcEEEEeCCCChhHHHHHHhcCeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      |+||||++.++.++..+.|++.++++..... +..++.+.+.++++|++++++..++++++++++|+||+|+++|+|+||
T Consensus         1 m~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d~   80 (330)
T 4e5n_A            1 MLPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDN   80 (330)
T ss_dssp             CCCEEEECSCCCHHHHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCTT
T ss_pred             CCCEEEEecCCCHHHHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCcccc
Confidence            4799999999999999999999877653321 223455566788999999877789999999999999999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCcc-CcccccccccCCeEEEEecChhHHHH
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKK-GEFKMTTKFTGKSVGILGMGRIGTAI  163 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~-~~~~~~~~l~g~~vgIiG~G~iG~~~  163 (317)
                      ||+++|+++||.|+|+||+++.+||||+++++|+++|++.++++.+++|.|.. .....+.+++|+||||||+|.||+.+
T Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~v  160 (330)
T 4e5n_A           81 FDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAM  160 (330)
T ss_dssp             BCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHH
T ss_pred             cCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999972 22235789999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          164 AKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       164 a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      |+++++|||+|++||++....     .+. ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+
T Consensus       161 A~~l~~~G~~V~~~d~~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~  239 (330)
T 4e5n_A          161 ADRLQGWGATLQYHEAKALDTQTEQRLGL-RQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS  239 (330)
T ss_dssp             HHHTTTSCCEEEEECSSCCCHHHHHHHTE-EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGG
T ss_pred             HHHHHHCCCEEEEECCCCCcHhHHHhcCc-eeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCc
Confidence            999999999999999986321     122 24589999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeeCCCCC-------CCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 042102          239 LVDEHELVSALLQGRLGGAGLDVFEHE-------PDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKK  310 (317)
Q Consensus       239 ~vd~~aL~~al~~g~i~ga~lDV~~~E-------P~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~  310 (317)
                      ++|+++|+++|++|+|.||+||||++|       |++. +|||++|||++|||+||+|.++++++.+.+++|+.+|++|+
T Consensus       240 ~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~  319 (330)
T 4e5n_A          240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGE  319 (330)
T ss_dssp             GBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999       9654 59999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 042102          311 PLLTPVV  317 (317)
Q Consensus       311 ~~~~~v~  317 (317)
                      ++.|.||
T Consensus       320 ~~~~~vn  326 (330)
T 4e5n_A          320 RPINAVN  326 (330)
T ss_dssp             CCTTBSS
T ss_pred             CCCCccC
Confidence            9999886

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=6.1e-72  Score=526.65  Aligned_cols=305  Identities=24%  Similarity=0.378  Sum_probs=262.2

Q ss_pred             cEEEEeCCCChh---HHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            8 IIVLMVCPVSNY---LEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         8 ~~vl~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      ||||++.....+   +.+.++ .+....+.. + ..+...+.++++|+++++..+++++++|+++|+||+|+++|+|+||
T Consensus         1 Mkil~~~~~~~~~p~~~e~l~-~~~~~~~~~-~-~~~~~~~~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~   77 (334)
T 3kb6_A            1 MNVLFTSVPQEDVPFYQEALK-DLSLKIYTT-D-VSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDH   77 (334)
T ss_dssp             -CEEECSCCTTHHHHHHHHTT-TSCEEECSS-C-GGGSCHHHHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTT
T ss_pred             CEEEEeCCCcccCHHHHHHHH-hCCcEEEeC-C-cccCCHHHhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccch
Confidence            789998743332   223333 333333221 1 1111112245689998888889999999999999999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHH
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA  164 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a  164 (317)
                      ||+++|+++||.|+|+||+++.+||||+++++|++.|++.++++.++.+.|.......+.+++|+|+||||+|.||+.+|
T Consensus        78 id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~va  157 (334)
T 3kb6_A           78 IDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVA  157 (334)
T ss_dssp             BCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHH
T ss_pred             hcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccccccceecCcEEEEECcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999875444568899999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCC--CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCH
Q 042102          165 KRAEAFDCIIGYNSRTEKPNL--NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       165 ~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      +++++|||+|++||+......  ......++++++++||+|++|||+|++|+|+|+++.|++||+|++|||+|||++||+
T Consensus       158 ~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde  237 (334)
T 3kb6_A          158 MYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDT  237 (334)
T ss_dssp             HHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred             HhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccH
Confidence            999999999999998765321  122457899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEeeCCCCCCCCCc----------------ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHH
Q 042102          243 HELVSALLQGRLGGAGLDVFEHEPDVPE----------------ELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH  306 (317)
Q Consensus       243 ~aL~~al~~g~i~ga~lDV~~~EP~~~~----------------~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~  306 (317)
                      +||++||++|+|+||+||||++||++.+                +||++|||++|||+||+|.++++++.+.+++|+.+|
T Consensus       238 ~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~  317 (334)
T 3kb6_A          238 DALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAF  317 (334)
T ss_dssp             HHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999996421                589999999999999999999999999999999999


Q ss_pred             HCCCCCCCC
Q 042102          307 FGKKPLLTP  315 (317)
Q Consensus       307 ~~g~~~~~~  315 (317)
                      ++|+++...
T Consensus       318 l~Ge~~~~~  326 (334)
T 3kb6_A          318 VKGDLEQIK  326 (334)
T ss_dssp             HHTCGGGGG
T ss_pred             HcCCCCcCC
Confidence            999976543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=3.1e-70  Score=525.52  Aligned_cols=311  Identities=26%  Similarity=0.383  Sum_probs=277.2

Q ss_pred             CCCcEEEEeCCCChhHHHHHHhc-C-eEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCC
Q 042102            5 SNNIIVLMVCPVSNYLEQEIEKS-F-KVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGL   82 (317)
Q Consensus         5 ~~~~~vl~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   82 (317)
                      ++|||||+++++.+...+.|++. | ++.. ......++.+.+.++++|++++++.+++++++++++|+||+|+++++|+
T Consensus        13 ~~~~kIl~~~~i~~~~~~~l~~~g~~~v~~-~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~   91 (416)
T 3k5p_A           13 RDRINVLLLEGISQTAVEYFKSSGYTNVTH-LPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGT   91 (416)
T ss_dssp             GGGSCEEECSCCCHHHHHHHHHTTCCCEEE-CSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEECSSCC
T ss_pred             CCCcEEEEECCCCHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEEECcccc
Confidence            35799999999999999999864 6 5554 3222245555667889999988888899999999999999999999999


Q ss_pred             CcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHH
Q 042102           83 DKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTA  162 (317)
Q Consensus        83 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~  162 (317)
                      ||||+++|+++||.|+|+|++++++||||+++++|+++|+++++++.+++|.|.+.. ..+.+++|+|+||||+|.||+.
T Consensus        92 d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~-~~~~el~gktvGIIGlG~IG~~  170 (416)
T 3k5p_A           92 NQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA-IGSREVRGKTLGIVGYGNIGSQ  170 (416)
T ss_dssp             TTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC-TTCCCSTTCEEEEECCSHHHHH
T ss_pred             CccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC-CCCccCCCCEEEEEeeCHHHHH
Confidence            999999999999999999999999999999999999999999999999999998543 2468999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCC-CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          163 IAKRAEAFDCIIGYNSRTEKPNL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       163 ~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      +|+++++|||+|++||++..... ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||
T Consensus       171 vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd  250 (416)
T 3k5p_A          171 VGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVD  250 (416)
T ss_dssp             HHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBC
T ss_pred             HHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhh
Confidence            99999999999999998765432 23446789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEeeCCCCCCCCC-----cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q 042102          242 EHELVSALLQGRLGGAGLDVFEHEPDVP-----EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV  316 (317)
Q Consensus       242 ~~aL~~al~~g~i~ga~lDV~~~EP~~~-----~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  316 (317)
                      +++|+++|++|+|+||+||||++||+++     +|||++|||++|||+||+|.|+++++...+++|+.+|+.++.+.+.|
T Consensus       251 ~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~~~V  330 (416)
T 3k5p_A          251 LEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAV  330 (416)
T ss_dssp             HHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCTTBS
T ss_pred             HHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCcee
Confidence            9999999999999999999999999865     48999999999999999999999999999999999999888888877


Q ss_pred             C
Q 042102          317 V  317 (317)
Q Consensus       317 ~  317 (317)
                      |
T Consensus       331 n  331 (416)
T 3k5p_A          331 N  331 (416)
T ss_dssp             S
T ss_pred             e
Confidence            5

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=1.7e-69  Score=521.45  Aligned_cols=311  Identities=25%  Similarity=0.350  Sum_probs=272.5

Q ss_pred             CCCcEEEEeCCCChhHHHHHHhc-C-eEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCC
Q 042102            5 SNNIIVLMVCPVSNYLEQEIEKS-F-KVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGL   82 (317)
Q Consensus         5 ~~~~~vl~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   82 (317)
                      .++||||+++++.+...+.|++. | ++.+... ...++.+.+.++++|++++++.+++++++++++|+||+|+++|+|+
T Consensus         2 ~~~~kil~~~~~~~~~~~~l~~~~~~~v~~~~~-~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   80 (404)
T 1sc6_A            2 KDKIKFLLVEGVHQKALESLRAAGYTNIEFHKG-ALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGT   80 (404)
T ss_dssp             CSSCCEEECSCCCHHHHHHHHHTTCCCEEECSS-CCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCC
T ss_pred             CCceEEEEeCCCCHHHHHHHHhCCCcEEEEcCC-CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCccc
Confidence            45689999999988888888764 6 5664322 2234555566889999988888899999999999999999999999


Q ss_pred             CcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHH
Q 042102           83 DKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTA  162 (317)
Q Consensus        83 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~  162 (317)
                      ||||+++|+++||.|+|+|++++.+||||++++||+++|+++++++.+++|.|.+.. ..+.+++|+|+||||+|.||+.
T Consensus        81 d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~-~~~~el~gktlGiIGlG~IG~~  159 (404)
T 1sc6_A           81 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA-AGSFEARGKKLGIIGYGHIGTQ  159 (404)
T ss_dssp             TTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC------CCCSTTCEEEEECCSHHHHH
T ss_pred             CccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccC-CCccccCCCEEEEEeECHHHHH
Confidence            999999999999999999999999999999999999999999999999999997532 2467999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCCC-ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          163 IAKRAEAFDCIIGYNSRTEKPNLN-YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       163 ~a~~l~~~G~~V~~~~~~~~~~~~-~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      +|+++++|||+|++||++.....+ .....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|
T Consensus       160 vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd  239 (404)
T 1sc6_A          160 LGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD  239 (404)
T ss_dssp             HHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred             HHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHh
Confidence            999999999999999997654433 3345689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEeeCCCCCCCCC-----cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q 042102          242 EHELVSALLQGRLGGAGLDVFEHEPDVP-----EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV  316 (317)
Q Consensus       242 ~~aL~~al~~g~i~ga~lDV~~~EP~~~-----~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  316 (317)
                      +++|+++|++|+++||+||||+.||.++     +|||++|||++|||+|++|.|+++++...+++|+.+|++|+++.+.|
T Consensus       240 ~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~v  319 (404)
T 1sc6_A          240 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAV  319 (404)
T ss_dssp             HHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTBS
T ss_pred             HHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCccee
Confidence            9999999999999999999999999763     48999999999999999999999999999999999999999888877


Q ss_pred             C
Q 042102          317 V  317 (317)
Q Consensus       317 ~  317 (317)
                      |
T Consensus       320 n  320 (404)
T 1sc6_A          320 N  320 (404)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.3e-69  Score=506.17  Aligned_cols=302  Identities=22%  Similarity=0.356  Sum_probs=268.0

Q ss_pred             CCcEEEEeCCCChhHHHHH-HhcCe-EEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCC
Q 042102            6 NNIIVLMVCPVSNYLEQEI-EKSFK-VFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLD   83 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   83 (317)
                      .|||||++.+..+.+.+.| ++.++ +.... .. .++.+.+.++++|+++++.  .+++++++++|+||||+++|+|+|
T Consensus         4 ~~mkili~~~~~~~~~~~L~~~~~p~~~~~~-~~-~~~~~~~~~~~ad~li~~~--~~~~~~l~~~~~Lk~I~~~~~G~d   79 (324)
T 3hg7_A            4 SQRTLLLLSQDNAHYERLLKAAHLPHLRILR-AD-NQSDAEKLIGEAHILMAEP--ARAKPLLAKANKLSWFQSTYAGVD   79 (324)
T ss_dssp             CCEEEEEESTTHHHHHHHHHHSCCTTEEEEE-CS-SHHHHHHHGGGCSEEEECH--HHHGGGGGGCTTCCEEEESSSCCG
T ss_pred             cccEEEEecCCCHHHHHHHhhccCCCeEEEe-CC-ChhHHHHHhCCCEEEEECC--CCCHHHHhhCCCceEEEECCCCCC
Confidence            4699999999999999999 66543 33222 22 2334455678899988743  466789999999999999999999


Q ss_pred             cCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHH
Q 042102           84 KIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAI  163 (317)
Q Consensus        84 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~  163 (317)
                      +||++++++ ||.|+|+||+++.+||||+++++|++.|+++++++.+++|.|...   .+.+++|+||||||+|.||+.+
T Consensus        80 ~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~---~~~~l~g~tvGIIGlG~IG~~v  155 (324)
T 3hg7_A           80 VLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH---PYQGLKGRTLLILGTGSIGQHI  155 (324)
T ss_dssp             GGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CCCCSTTCEEEEECCSHHHHHH
T ss_pred             ccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC---CCcccccceEEEEEECHHHHHH
Confidence            999988764 999999999999999999999999999999999999999999842   3578999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCCCc---cccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          164 AKRAEAFDCIIGYNSRTEKPNLNY---KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       164 a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      |+++++|||+|++|++++......   ....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++
T Consensus       156 A~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~v  235 (324)
T 3hg7_A          156 AHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAI  235 (324)
T ss_dssp             HHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGB
T ss_pred             HHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhh
Confidence            999999999999999987543322   23468999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          241 DEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       241 d~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      |+++|+++|++|+|+||+||||++||+++ +|||++|||++|||+||+|.+  .++.+.+++|+.+|++|+++.|.|+
T Consensus       236 de~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~~~V~  311 (324)
T 3hg7_A          236 NEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKID  311 (324)
T ss_dssp             CHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             CHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCcceEC
Confidence            99999999999999999999999999876 499999999999999999976  5799999999999999999999875

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=7.1e-69  Score=506.50  Aligned_cols=308  Identities=19%  Similarity=0.259  Sum_probs=266.4

Q ss_pred             cEEEEeCCC--ChhHHHHHH-h-cCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHH-HHhcCC--CceEEEECCC
Q 042102            8 IIVLMVCPV--SNYLEQEIE-K-SFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAE-LIESLP--KLEIVATCSV   80 (317)
Q Consensus         8 ~~vl~~~~~--~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-~l~~~~--~Lk~i~~~~~   80 (317)
                      |||++....  ...+.+.+. + .+++..... ... +.+.+.++++|+++++...+++++ +++++|  +||+|+++|+
T Consensus         2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   79 (343)
T 2yq5_A            2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQ-ALT-SATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIV   79 (343)
T ss_dssp             CEEEEESCCGGGHHHHHHHHHHHTCEEEEESS-CCS-TTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSS
T ss_pred             ceEEEEecCcccHHHHHHHHHhCCeEEEECCC-CCC-HHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECce
Confidence            788887732  223344443 2 356654332 212 234466889999999877899999 999986  6999999999


Q ss_pred             CCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHH-cCCCccCcccccccccCCeEEEEecChh
Q 042102           81 GLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVR-SGEWKKGEFKMTTKFTGKSVGILGMGRI  159 (317)
Q Consensus        81 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~-~~~w~~~~~~~~~~l~g~~vgIiG~G~i  159 (317)
                      |+|+||+++|+++||.|+|+||+++++||||+++++|++.|++.++++.++ +|.|.+.....+.+++|+||||||+|.|
T Consensus        80 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~I  159 (343)
T 2yq5_A           80 GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHI  159 (343)
T ss_dssp             CCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHH
T ss_pred             eecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHH
Confidence            999999999999999999999999999999999999999999999999999 8877643334678999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCC-CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          160 GTAIAKRAEAFDCIIGYNSRTEKPNL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       160 G~~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      |+.+|+++++|||+|++||++..... ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+
T Consensus       160 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~  239 (343)
T 2yq5_A          160 GSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGE  239 (343)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGG
T ss_pred             HHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCCh
Confidence            99999999999999999999875432 12234589999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeeCCCCCC--CCCc------------ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHH
Q 042102          239 LVDEHELVSALLQGRLGGAGLDVFEHEP--DVPE------------ELIGLENVVLLPHVASATVETRKAMADLVVGNLQ  304 (317)
Q Consensus       239 ~vd~~aL~~al~~g~i~ga~lDV~~~EP--~~~~------------~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~  304 (317)
                      +||+++|+++|++|+|.||+||||++||  ++.+            |||++|||++|||+|++|.++++++.+.+++|+.
T Consensus       240 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~  319 (343)
T 2yq5_A          240 LVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQL  319 (343)
T ss_dssp             GBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999  3332            7999999999999999999999999999999999


Q ss_pred             HHHCCCCCCCCCC
Q 042102          305 AHFGKKPLLTPVV  317 (317)
Q Consensus       305 ~~~~g~~~~~~v~  317 (317)
                      +|++|+++.|.|+
T Consensus       320 ~~l~g~~~~~~v~  332 (343)
T 2yq5_A          320 TIAKGGRPRSIVN  332 (343)
T ss_dssp             HHHTTCCCTTBC-
T ss_pred             HHHcCCCCCceEC
Confidence            9999999999875

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=5e-69  Score=504.45  Aligned_cols=302  Identities=23%  Similarity=0.324  Sum_probs=267.4

Q ss_pred             cEEEEeCCCChhHHHHHHhcCe-EEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHH-hcCCCceEEEECCCCCCcC
Q 042102            8 IIVLMVCPVSNYLEQEIEKSFK-VFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELI-ESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l-~~~~~Lk~i~~~~~G~d~i   85 (317)
                      ||||+++++.++..+.|++.++ +......+    ...+.+.++|+++++. .++ ++++ +++|+||||+++|+|+|+|
T Consensus         2 ~kil~~~~~~~~~~~~L~~~~~~~~~~~~~~----~~~~~~~~ad~l~~~~-~~~-~~~l~~~~~~Lk~I~~~~~G~d~i   75 (324)
T 3evt_A            2 SLVLMAQATKPEQLQQLQTTYPDWTFKDAAA----VTAADYDQIEVMYGNH-PLL-KTILARPTNQLKFVQVISAGVDYL   75 (324)
T ss_dssp             CEEEECSCCCHHHHHHHHHHCTTCEEEETTS----CCTTTGGGEEEEESCC-THH-HHHHHSTTCCCCEEECSSSCCTTS
T ss_pred             cEEEEecCCCHHHHHHHHhhCCCeEEecCCc----cChHHhCCcEEEEECC-cCh-HHHHHhhCCCceEEEECCcccccc
Confidence            7899999999999999988653 22111111    1223456789888754 356 8999 7899999999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHH-HHHHHcCCCccCcccccccccCCeEEEEecChhHHHHH
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES-DRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA  164 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~-~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a  164 (317)
                      |+++|+++||.|+|+||+++.+||||+++++|++.|++.++ .+.+++|.|....  .+.+++|+||||||+|.||+.+|
T Consensus        76 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~--~~~~l~gktvGIiGlG~IG~~vA  153 (324)
T 3evt_A           76 PLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM--TTSTLTGQQLLIYGTGQIGQSLA  153 (324)
T ss_dssp             CHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS--CCCCSTTCEEEEECCSHHHHHHH
T ss_pred             CHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC--CCccccCCeEEEECcCHHHHHHH
Confidence            99999999999999999999999999999999999999999 9999999998532  47899999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCCCc---cccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          165 KRAEAFDCIIGYNSRTEKPNLNY---KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       165 ~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      +++++|||+|++|+++.......   ....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|
T Consensus       154 ~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  233 (324)
T 3evt_A          154 AKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVD  233 (324)
T ss_dssp             HHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBC
T ss_pred             HHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhh
Confidence            99999999999999887554322   124579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCC-CCCCCCCC
Q 042102          242 EHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGK-KPLLTPVV  317 (317)
Q Consensus       242 ~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g-~~~~~~v~  317 (317)
                      +++|+++|++|+|+||+||||++||+++ +|||++|||++|||+||+|.++.+++.+.+++|+.+|++| +++.|.|+
T Consensus       234 ~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~V~  311 (324)
T 3evt_A          234 TTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVD  311 (324)
T ss_dssp             HHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBCC
T ss_pred             HHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCceEC
Confidence            9999999999999999999999999876 5999999999999999999999999999999999999965 56788774

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=1.9e-68  Score=505.67  Aligned_cols=308  Identities=23%  Similarity=0.353  Sum_probs=271.8

Q ss_pred             CcEEEEeCCCChh-----HHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEE-eCCCCCCHHHHhcCCCceEEEECCC
Q 042102            7 NIIVLMVCPVSNY-----LEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVG-SAAAGADAELIESLPKLEIVATCSV   80 (317)
Q Consensus         7 ~~~vl~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~~~~~~l~~~~~Lk~i~~~~~   80 (317)
                      +|||++++.+...     .++.|+ .+++..+......++.+.+.++++|++++ +...++++++++++|+||+|+++|+
T Consensus         2 smki~~~d~~~~~~~~~~~~~~l~-~~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~   80 (352)
T 3gg9_A            2 SLKIAVLDDYQDAVRKLDCFSLLQ-DHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGR   80 (352)
T ss_dssp             CCEEEECCCTTCCGGGSGGGGGGT-TSEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSC
T ss_pred             ceEEEEEcCccccchhhhhhhhhc-CceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCc
Confidence            4899999876532     123454 37777644322244556677899999998 4568899999999999999999999


Q ss_pred             CC----CcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc---------cccccccc
Q 042102           81 GL----DKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE---------FKMTTKFT  147 (317)
Q Consensus        81 G~----d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~---------~~~~~~l~  147 (317)
                      |+    |+||+++|+++||.|+|+||+ +.+||||+++++|++.|+++++++.+++|.|....         ...+.+++
T Consensus        81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~  159 (352)
T 3gg9_A           81 VSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLK  159 (352)
T ss_dssp             CCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCT
T ss_pred             ccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCC
Confidence            99    999999999999999999999 99999999999999999999999999999998532         12478999


Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      |+||||||+|.||+.+|+++++|||+|++||++....    .+.....++++++++||+|++|+|++++|+++|+++.|+
T Consensus       160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~  239 (352)
T 3gg9_A          160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT  239 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred             CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHh
Confidence            9999999999999999999999999999999875321    344445689999999999999999999999999999999


Q ss_pred             ccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHH
Q 042102          224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGN  302 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~n  302 (317)
                      .||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.++++++...+++|
T Consensus       240 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~n  319 (352)
T 3gg9_A          240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQN  319 (352)
T ss_dssp             TSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHH
T ss_pred             hCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999875 599999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCC
Q 042102          303 LQAHFGKKPLLTPVV  317 (317)
Q Consensus       303 l~~~~~g~~~~~~v~  317 (317)
                      |.+|++|+|+ |.||
T Consensus       320 i~~~~~G~p~-~~Vn  333 (352)
T 3gg9_A          320 ILDILQGNVD-SVAN  333 (352)
T ss_dssp             HHHHHTTCCT-TBSC
T ss_pred             HHHHHcCCCC-cccC
Confidence            9999999764 6664

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=8.5e-69  Score=507.69  Aligned_cols=295  Identities=23%  Similarity=0.389  Sum_probs=263.3

Q ss_pred             ChhHHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCC--CCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhC
Q 042102           17 SNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAA--AGADAELIESLPKLEIVATCSVGLDKIDLARCKEK   93 (317)
Q Consensus        17 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~--~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~   93 (317)
                      ...+.+.|++. ++++.........+.+.+.++++|++++++.  .++++++++++|+||+|+++|+|+||||+++|+++
T Consensus        29 ~l~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~  108 (351)
T 3jtm_A           29 ALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAA  108 (351)
T ss_dssp             GGGCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHT
T ss_pred             hHHHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhc
Confidence            33467778764 7777544322233455677899999988643  46999999999999999999999999999999999


Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-cccccccCCeEEEEecChhHHHHHHHHhhCCC
Q 042102           94 GIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC  172 (317)
Q Consensus        94 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~  172 (317)
                      ||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..... ..+.+++|+||||||+|.||+.+|+++++|||
T Consensus       109 gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~  188 (351)
T 3jtm_A          109 GLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC  188 (351)
T ss_dssp             TCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCC
T ss_pred             CeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999974221 23678999999999999999999999999999


Q ss_pred             EEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHH
Q 042102          173 IIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS  247 (317)
Q Consensus       173 ~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~  247 (317)
                      +|++|++++.+.     .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|++
T Consensus       189 ~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~  268 (351)
T 3jtm_A          189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD  268 (351)
T ss_dssp             EEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHH
T ss_pred             EEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHH
Confidence            999999876432     233445689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102          248 ALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP  311 (317)
Q Consensus       248 al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  311 (317)
                      +|++|+|.||+||||++||+++ +|||++|||++|||+||.|.+++.++.+.+.+|+.+|++|++
T Consensus       269 aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~  333 (351)
T 3jtm_A          269 AVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGED  333 (351)
T ss_dssp             HHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999876 499999999999999999999999999999999999999996

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.9e-67  Score=495.94  Aligned_cols=311  Identities=72%  Similarity=1.161  Sum_probs=285.7

Q ss_pred             CcEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCC
Q 042102            7 NIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKID   86 (317)
Q Consensus         7 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   86 (317)
                      ||+|++++++.+...+.|++.+++.......+.++++.+.++++|++++++..++++++++++|+||+|+++|+|+|+||
T Consensus        23 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id  102 (333)
T 3ba1_A           23 AIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDKVD  102 (333)
T ss_dssp             CCEEEECSCCCHHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSCCTTBC
T ss_pred             CCEEEEeCCCCHHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCccccccC
Confidence            68999999999988899988888765432233455566777899999987777899999999999999999999999999


Q ss_pred             hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHH
Q 042102           87 LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKR  166 (317)
Q Consensus        87 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~  166 (317)
                      +++|+++||.|+|+||+++.+||||+++++|+++|++.++++.+++|.|.+.....+.+++|++|||||+|.||+.+|++
T Consensus       103 ~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~  182 (333)
T 3ba1_A          103 LIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAER  182 (333)
T ss_dssp             HHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHHHHH
T ss_pred             HHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997433335789999999999999999999999


Q ss_pred             HhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHH
Q 042102          167 AEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV  246 (317)
Q Consensus       167 l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~  246 (317)
                      +++||++|++|+++.....+.....++++++++||+|++|+|.+++|+++++++.++.||+|++|||++||.++|+++|.
T Consensus       183 l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~  262 (333)
T 3ba1_A          183 AEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELV  262 (333)
T ss_dssp             HHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHH
T ss_pred             HHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHH
Confidence            99999999999998765545545678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          247 SALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       247 ~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      ++|++|+++||++|||++||.++++||++|||++|||+|+.|.++..++.+.+++|+.+|++|+++.|.||
T Consensus       263 ~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          263 SALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             HHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred             HHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999877899999999999999999999999999999999999999999999886

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=3.6e-68  Score=504.90  Aligned_cols=306  Identities=19%  Similarity=0.276  Sum_probs=263.4

Q ss_pred             CcEEEEeCCC--------ChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEEC
Q 042102            7 NIIVLMVCPV--------SNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATC   78 (317)
Q Consensus         7 ~~~vl~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~   78 (317)
                      .+++++.++.        .++.++.|++.|+++.. .....++++++.+.++++++.  ..++++++++++|+||+|++.
T Consensus        27 ~r~ivll~~~~~~~~~~~~~~~~~~L~~~~~v~~~-~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~p~Lk~I~~~  103 (365)
T 4hy3_A           27 ERPLAISAPEPRSLDLIFSDEARAALHSKYEIVEA-DPENIAGLGDDILGRARYIIG--QPPLSAETLARMPALRSILNV  103 (365)
T ss_dssp             -CCEEEEECTTSCHHHHCCHHHHHHHHHHSEEEEC-CGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTCTTCCEEECC
T ss_pred             CCCEEEEcCCcccccccCCHHHHHHHhCCcEEEEC-CCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhCCCCeEEEEe
Confidence            3456666654        44577889888988743 222233444444456777764  468999999999999999975


Q ss_pred             -CCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCc--cCcccccccccCCeEEEEe
Q 042102           79 -SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK--KGEFKMTTKFTGKSVGILG  155 (317)
Q Consensus        79 -~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~--~~~~~~~~~l~g~~vgIiG  155 (317)
                       |+|+||||+++|+++||.|+|+||+++.+||||+++++|+++|++.++++.+++|.|.  ......+.+++|+||||||
T Consensus       104 ~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIG  183 (365)
T 4hy3_A          104 ESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVG  183 (365)
T ss_dssp             SSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEEC
T ss_pred             cccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEec
Confidence             8999999999999999999999999999999999999999999999999999999854  2222357899999999999


Q ss_pred             cChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEE
Q 042102          156 MGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVL  231 (317)
Q Consensus       156 ~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl  231 (317)
                      +|.||+.+|+++++|||+|++||++....    .+. ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|
T Consensus       184 lG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gail  262 (365)
T 4hy3_A          184 FGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGV-EPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAF  262 (365)
T ss_dssp             CSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTC-EECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEE
T ss_pred             CCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCe-eeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEE
Confidence            99999999999999999999999875432    222 2468999999999999999999999999999999999999999


Q ss_pred             EEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCC
Q 042102          232 INIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKK  310 (317)
Q Consensus       232 VN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~  310 (317)
                      ||+|||++||+++|+++|++|+|+ |+||||++||+++ +|||++|||++|||+||+|.+++.++...+++||.+|++|+
T Consensus       263 IN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~  341 (365)
T 4hy3_A          263 ILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGL  341 (365)
T ss_dssp             EECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999998 8999999999875 59999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 042102          311 PLLTPVV  317 (317)
Q Consensus       311 ~~~~~v~  317 (317)
                      ++.+.|+
T Consensus       342 ~~~~~vn  348 (365)
T 4hy3_A          342 PPMRCKR  348 (365)
T ss_dssp             CCCSSEE
T ss_pred             Ccccccc
Confidence            9988763

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.7e-67  Score=491.55  Aligned_cols=307  Identities=26%  Similarity=0.402  Sum_probs=268.0

Q ss_pred             CCCCcEEEEeCCCChhHHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCC
Q 042102            4 NSNNIIVLMVCPVSNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGL   82 (317)
Q Consensus         4 ~~~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   82 (317)
                      ++..+||++++++.+...+.|++. +++.... .. .++.+.+.++++|+++++...++++++++++|+||||+++|+|+
T Consensus        23 ~~~~~~vli~~~~~~~~~~~l~~~~~~v~~~~-~~-~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~  100 (335)
T 2g76_A           23 MANLRKVLISDSLDPCCRKILQDGGLQVVEKQ-NL-SKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGV  100 (335)
T ss_dssp             ---CCEEEECSCCCHHHHHHHHHHTCEEEECC-SC-CHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSSC
T ss_pred             hccceEEEEcCCCCHHHHHHHHhCCCEEEECC-CC-CHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCCCc
Confidence            334468999999888888888765 5655432 22 33444556789999998777789999999999999999999999


Q ss_pred             CcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHH
Q 042102           83 DKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTA  162 (317)
Q Consensus        83 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~  162 (317)
                      |+||+++|+++||.|+|+||+++.+||||+++++|++.|+++++++.+++|.|.+.. ..+.+++|+||||||+|.||+.
T Consensus       101 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~l~g~tvgIIGlG~IG~~  179 (335)
T 2g76_A          101 DNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK-FMGTELNGKTLGILGLGRIGRE  179 (335)
T ss_dssp             TTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGG-GCBCCCTTCEEEEECCSHHHHH
T ss_pred             chhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccC-CCCcCCCcCEEEEEeECHHHHH
Confidence            999999999999999999999999999999999999999999999999999997432 2467999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          163 IAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       163 ~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      +|+++++||++|++||++..+.    .+.. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+
T Consensus       180 vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~  258 (335)
T 2g76_A          180 VATRMQSFGMKTIGYDPIISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGG  258 (335)
T ss_dssp             HHHHHHTTTCEEEEECSSSCHHHHHHTTCE-ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTT
T ss_pred             HHHHHHHCCCEEEEECCCcchhhhhhcCce-eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCcc
Confidence            9999999999999999876532    2222 3589999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCC
Q 042102          239 LVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLT  314 (317)
Q Consensus       239 ~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  314 (317)
                      ++|+++|+++|++|+|+||+||||+.||.+++|||++|||++|||+|++|.+++.++.+.+++|+.+|++|+++.|
T Consensus       259 vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~n  334 (335)
T 2g76_A          259 IVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTG  334 (335)
T ss_dssp             SBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-------
T ss_pred             ccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999999999666799999999999999999999999999999999999999999876

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=5.6e-67  Score=493.14  Aligned_cols=308  Identities=22%  Similarity=0.318  Sum_probs=267.4

Q ss_pred             cEEEEeC--CCChhHHHHHHhc--CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCC--ceEEEECCCC
Q 042102            8 IIVLMVC--PVSNYLEQEIEKS--FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPK--LEIVATCSVG   81 (317)
Q Consensus         8 ~~vl~~~--~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~--Lk~i~~~~~G   81 (317)
                      |||++..  +......+.+.+.  +++..... ... +.+.+.++++|++++++..++++++++++|+  ||+|+++|+|
T Consensus         1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~-~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   78 (333)
T 1dxy_A            1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTE-FLD-ENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (333)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSS-CCC-TTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEeccccCHHHHHHHHHhCCeEEEEcCC-CCh-HHHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcc
Confidence            4788864  4445566666543  34443222 212 2344567899999987777899999999988  9999999999


Q ss_pred             CCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHH
Q 042102           82 LDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGT  161 (317)
Q Consensus        82 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~  161 (317)
                      +||||+++|+++||.|+|+||+++.+||||+++++|++.|++.++++.+++|.|.+.....+.+++|+||||||+|.||+
T Consensus        79 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~  158 (333)
T 1dxy_A           79 TDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQ  158 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHH
T ss_pred             cCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999853111246799999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCC-CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          162 AIAKRAEAFDCIIGYNSRTEKPNL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       162 ~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      .+|+++++|||+|++||++..... ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++
T Consensus       159 ~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v  238 (333)
T 1dxy_A          159 VAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLI  238 (333)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSB
T ss_pred             HHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCccc
Confidence            999999999999999998765431 1123458999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEeeCCCCCCC-----------CC---cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHH
Q 042102          241 DEHELVSALLQGRLGGAGLDVFEHEPD-----------VP---EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH  306 (317)
Q Consensus       241 d~~aL~~al~~g~i~ga~lDV~~~EP~-----------~~---~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~  306 (317)
                      |+++|+++|++|+|+||+||||++||.           ++   +|||++|||++|||+||+|.+++.++.+.+++|+.+|
T Consensus       239 d~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~  318 (333)
T 1dxy_A          239 DTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDF  318 (333)
T ss_dssp             CHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999993           12   3799999999999999999999999999999999999


Q ss_pred             HCCCCCCCCCC
Q 042102          307 FGKKPLLTPVV  317 (317)
Q Consensus       307 ~~g~~~~~~v~  317 (317)
                      ++|+++.|.|+
T Consensus       319 ~~g~~~~~~v~  329 (333)
T 1dxy_A          319 LTKGETSTEVT  329 (333)
T ss_dssp             HHHSCCTTEEC
T ss_pred             HcCCCCCceeC
Confidence            99999988764

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=7.3e-66  Score=481.33  Aligned_cols=307  Identities=36%  Similarity=0.541  Sum_probs=276.2

Q ss_pred             cEEEEeCCCChhHHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCC
Q 042102            8 IIVLMVCPVSNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKID   86 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   86 (317)
                      ||||++.++.++..+.|++. +++..........+.+.+.++++|+++++...++++++++++|+||||+++|+|+|+||
T Consensus         1 ~~vl~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   80 (311)
T 2cuk_A            1 MRVLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVD   80 (311)
T ss_dssp             CEEEESSCCSSSTTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCTTBC
T ss_pred             CEEEEeCCCCHHHHHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCccccC
Confidence            68999998888777888876 77764322222344455668899999987667899999999999999999999999999


Q ss_pred             hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccC--cccccccccCCeEEEEecChhHHHHH
Q 042102           87 LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG--EFKMTTKFTGKSVGILGMGRIGTAIA  164 (317)
Q Consensus        87 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~vgIiG~G~iG~~~a  164 (317)
                      +++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|...  ....+.+++|+||||||+|.||+.+|
T Consensus        81 ~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A  160 (311)
T 2cuk_A           81 LEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVA  160 (311)
T ss_dssp             HHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHH
T ss_pred             HHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999631  11246789999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHH
Q 042102          165 KRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHE  244 (317)
Q Consensus       165 ~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~a  244 (317)
                      +++++||++|++|+++.....  ....++++++++||+|++|+|.+++|+++++++.|+.||+|+++||+|||+++|+++
T Consensus       161 ~~l~~~G~~V~~~d~~~~~~~--~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~a  238 (311)
T 2cuk_A          161 KRALAFGMRVVYHARTPKPLP--YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEA  238 (311)
T ss_dssp             HHHHHTTCEEEEECSSCCSSS--SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHH
T ss_pred             HHHHHCCCEEEEECCCCcccc--cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHH
Confidence            999999999999999876543  235689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          245 LVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       245 L~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      |.++|+ |+|.||++|||++||.+. ++||++||+++|||++++|.++..++.+.+++|+.+|++|+++.|.|+
T Consensus       239 L~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  311 (311)
T 2cuk_A          239 LVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPVV  311 (311)
T ss_dssp             HHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBCC
T ss_pred             HHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCccC
Confidence            999999 999999999999999654 599999999999999999999999999999999999999999998874

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=2.2e-66  Score=488.84  Aligned_cols=309  Identities=22%  Similarity=0.311  Sum_probs=270.1

Q ss_pred             cEEEEeC--CCChhHHHHHHhcCe--EEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCC--ceEEEECCCC
Q 042102            8 IIVLMVC--PVSNYLEQEIEKSFK--VFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPK--LEIVATCSVG   81 (317)
Q Consensus         8 ~~vl~~~--~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~--Lk~i~~~~~G   81 (317)
                      |||+++.  +..+...+.+.+.+.  +.. ......++.+.+.++++|+++++...++++++++++|+  ||+|++.|+|
T Consensus         1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   79 (331)
T 1xdw_A            1 MKVLCYGVRDVELPIFEACNKEFGYDIKC-VPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAG   79 (331)
T ss_dssp             CEEEECSCCTTTHHHHHHHGGGTCCEEEE-CSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSSC
T ss_pred             CEEEEEecCccCHHHHHHHHHhcCeEEEE-CCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEcccc
Confidence            5788865  555666777766543  433 22221224445668899999987778899999999998  9999999999


Q ss_pred             CCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHH
Q 042102           82 LDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGT  161 (317)
Q Consensus        82 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~  161 (317)
                      +||||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|.+.....+.++.|+||||||+|.||+
T Consensus        80 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~  159 (331)
T 1xdw_A           80 TDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGR  159 (331)
T ss_dssp             CTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHH
T ss_pred             ccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999863112346789999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCC-CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          162 AIAKRAEAFDCIIGYNSRTEKPNL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       162 ~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      .+|+++++|||+|++||++..... ......++++++++||+|++|+|++++|+++|+++.|+.||+|+++||+|||+++
T Consensus       160 ~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~v  239 (331)
T 1xdw_A          160 VAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLV  239 (331)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGB
T ss_pred             HHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccc
Confidence            999999999999999998765431 1123458999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEeeCCCCCCC--C--------Cc----ccCCC-CceEEcccCCCccHHHHHHHHHHHHHHHHH
Q 042102          241 DEHELVSALLQGRLGGAGLDVFEHEPD--V--------PE----ELIGL-ENVVLLPHVASATVETRKAMADLVVGNLQA  305 (317)
Q Consensus       241 d~~aL~~al~~g~i~ga~lDV~~~EP~--~--------~~----~L~~~-pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~  305 (317)
                      |+++|+++|++|+|+||+||||++||+  +        ++    |||++ |||++|||+||+|.+++.++.+.+++|+.+
T Consensus       240 d~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~  319 (331)
T 1xdw_A          240 DTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKD  319 (331)
T ss_dssp             CHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999994  2        12    69999 999999999999999999999999999999


Q ss_pred             HHCCCCCCCCCC
Q 042102          306 HFGKKPLLTPVV  317 (317)
Q Consensus       306 ~~~g~~~~~~v~  317 (317)
                      |++|+++.|.|+
T Consensus       320 ~~~g~~~~~~v~  331 (331)
T 1xdw_A          320 LAETGDCPNKIK  331 (331)
T ss_dssp             HHHHSCCTTBCC
T ss_pred             HHcCCCCCCCCC
Confidence            999999999885

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=3.7e-66  Score=487.71  Aligned_cols=307  Identities=22%  Similarity=0.275  Sum_probs=267.8

Q ss_pred             cEEEEeCC--CChhHHHHHHhcC---eEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCC--ceEEEECCC
Q 042102            8 IIVLMVCP--VSNYLEQEIEKSF---KVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPK--LEIVATCSV   80 (317)
Q Consensus         8 ~~vl~~~~--~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~--Lk~i~~~~~   80 (317)
                      |||++...  ......+.+.+.+   ++..... ... +.+.+.++++|+++++...++++++++++|+  ||||+++|+
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~-~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   79 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK-LLT-PETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV   79 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSS-CCC-TTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEEECCC-CCc-HHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCc
Confidence            58888653  3344566776544   5543222 112 2344567899999987677899999999988  999999999


Q ss_pred             CCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhH
Q 042102           81 GLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIG  160 (317)
Q Consensus        81 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG  160 (317)
                      |+|+||+++|+++||.|+|+||+++++||||+++++|++.|++.++++.+++|.|.+.. ..+.+++|+||||||+|.||
T Consensus        80 G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~l~g~~vgIiG~G~IG  158 (333)
T 1j4a_A           80 GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP-TIGREVRDQVVGVVGTGHIG  158 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTT-CCBCCGGGSEEEEECCSHHH
T ss_pred             ccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCC-cccccCCCCEEEEEccCHHH
Confidence            99999999999999999999999999999999999999999999999999999996422 35679999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCC--CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          161 TAIAKRAEAFDCIIGYNSRTEKPNL--NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       161 ~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      +.+|+++++||++|++|+++..+..  ......++++++++||+|++|+|++++|+++|+++.|+.||+|+++||+|||+
T Consensus       159 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~  238 (333)
T 1j4a_A          159 QVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGP  238 (333)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred             HHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCc
Confidence            9999999999999999998775421  12223489999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeeCCCCCCC--CC--------c----ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHH
Q 042102          239 LVDEHELVSALLQGRLGGAGLDVFEHEPD--VP--------E----ELIGLENVVLLPHVASATVETRKAMADLVVGNLQ  304 (317)
Q Consensus       239 ~vd~~aL~~al~~g~i~ga~lDV~~~EP~--~~--------~----~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~  304 (317)
                      ++|+++|+++|++|+|+||+||||++||.  ++        +    |||++|||++|||+|++|.+++.++.+.+++|+.
T Consensus       239 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~  318 (333)
T 1j4a_A          239 LVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNL  318 (333)
T ss_dssp             GBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999993  22        2    5999999999999999999999999999999999


Q ss_pred             HHHCCCCCCCCCC
Q 042102          305 AHFGKKPLLTPVV  317 (317)
Q Consensus       305 ~~~~g~~~~~~v~  317 (317)
                      +|++|+++.|.|+
T Consensus       319 ~~~~g~~~~~~v~  331 (333)
T 1j4a_A          319 ELVEGKEAETPVK  331 (333)
T ss_dssp             HHHTTCCCSSBCC
T ss_pred             HHHcCCCCCcccc
Confidence            9999999998875

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=4.8e-66  Score=482.71  Aligned_cols=298  Identities=22%  Similarity=0.310  Sum_probs=259.1

Q ss_pred             CCCcEEEEeCCCC--hhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCC
Q 042102            5 SNNIIVLMVCPVS--NYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGL   82 (317)
Q Consensus         5 ~~~~~vl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   82 (317)
                      ++.|||++..+..  +.+.+.|++.++-+.+...++  .    ...++|+++++.   .++++++. |+||||++.|+|+
T Consensus         1 ~~~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~--~----~~~~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~aG~   70 (315)
T 3pp8_A            1 SNAMEIIFYHPTFNAAWWVNALEKALPHARVREWKV--G----DNNPADYALVWQ---PPVEMLAG-RRLKAVFVLGAGV   70 (315)
T ss_dssp             CCCEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT--T----CCSCCSEEEESS---CCHHHHTT-CCCSEEEESSSCC
T ss_pred             CCceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC--C----CccCcEEEEECC---CCHHHhCC-CCceEEEECCEec
Confidence            4568999988754  557778887764222211111  1    246899998863   58999999 9999999999999


Q ss_pred             CcC-C-hhh---HhhCCcEEEeCCCCC-cHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEec
Q 042102           83 DKI-D-LAR---CKEKGIRVANTPDVL-TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGM  156 (317)
Q Consensus        83 d~i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~  156 (317)
                      ||| | +++   +.++||.|+|+++++ +.+||||+++++|++.|++.++++.+++|.|...   .+++++|+||||||+
T Consensus        71 d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~---~~~~l~g~tvGIiG~  147 (315)
T 3pp8_A           71 DAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL---PEYTREEFSVGIMGA  147 (315)
T ss_dssp             HHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CCCCSTTCCEEEECC
T ss_pred             ccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC---CCCCcCCCEEEEEee
Confidence            999 7 876   788999999998764 7999999999999999999999999999999853   467899999999999


Q ss_pred             ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccc---cCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEE
Q 042102          157 GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN  233 (317)
Q Consensus       157 G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN  233 (317)
                      |.||+.+|+++++|||+|++|+++++...+...   ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus       148 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN  227 (315)
T 3pp8_A          148 GVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLN  227 (315)
T ss_dssp             SHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEE
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEE
Confidence            999999999999999999999988765433322   25799999999999999999999999999999999999999999


Q ss_pred             eCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCC
Q 042102          234 IGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPL  312 (317)
Q Consensus       234 ~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  312 (317)
                      +|||++||+++|+++|++|+|.||+||||++||++. +|||++|||++|||+||+|.+  .++.+.+++|+.+|++|+++
T Consensus       228 ~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~~~  305 (315)
T 3pp8_A          228 LARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEPV  305 (315)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999876 599999999999999999986  57999999999999999999


Q ss_pred             CCCCC
Q 042102          313 LTPVV  317 (317)
Q Consensus       313 ~~~v~  317 (317)
                      .|.|+
T Consensus       306 ~~~V~  310 (315)
T 3pp8_A          306 TGQVD  310 (315)
T ss_dssp             CCBCC
T ss_pred             CceEC
Confidence            99875

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=6.4e-65  Score=474.25  Aligned_cols=300  Identities=34%  Similarity=0.535  Sum_probs=267.9

Q ss_pred             CCcEEEEeCCCChhHHHHHHh-cCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            6 NNIIVLMVCPVSNYLEQEIEK-SFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      ++|||++++++.++..+.|++ .+++.. .. ...++.+.+.++++|+++++...++++++++++|+||||+++|+|+|+
T Consensus         2 ~~~~il~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~   79 (307)
T 1wwk_A            2 KRMKVLVAAPLHEKAIQVLKDAGLEVIY-EE-YPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDN   79 (307)
T ss_dssp             --CEEEECSCCCHHHHHHHHHTTCEEEE-CS-SCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCCTT
T ss_pred             CceEEEEeCCCCHHHHHHHHhCCeEEEe-CC-CCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccccc
Confidence            468999999988888888876 455543 22 223344556688999999876667999999999999999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHH
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA  164 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a  164 (317)
                      ||+++|+++||.|+|+||+++.+||||+++++|++.|+++++++.+++|.|.+.. ..+.+++|+||||||+|.||+.+|
T Consensus        80 id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~l~g~~vgIiG~G~IG~~~A  158 (307)
T 1wwk_A           80 IDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE-AMGIELEGKTIGIIGFGRIGYQVA  158 (307)
T ss_dssp             BCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTT-CCBCCCTTCEEEEECCSHHHHHHH
T ss_pred             cCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccC-cCCcccCCceEEEEccCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997422 246799999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          165 KRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       165 ~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      +++++||++|++|+++....    .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++
T Consensus       159 ~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~v  237 (307)
T 1wwk_A          159 KIANALGMNILLYDPYPNEERAKEVNGK-FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVV  237 (307)
T ss_dssp             HHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGB
T ss_pred             HHHHHCCCEEEEECCCCChhhHhhcCcc-ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCccc
Confidence            99999999999999987542    2222 348999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCC
Q 042102          241 DEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGK  309 (317)
Q Consensus       241 d~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g  309 (317)
                      |+++|.++|++|+|.||++|||++||.+. +|||++||+++|||++++|.++..++.+.+++|+.+|++|
T Consensus       238 d~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          238 DTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             CHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999854 5999999999999999999999999999999999999976

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.8e-64  Score=473.84  Aligned_cols=307  Identities=30%  Similarity=0.454  Sum_probs=273.9

Q ss_pred             cEEEEeCCCChhHHHHHHhcCeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCC-ceEEEECCCCCCcC
Q 042102            8 IIVLMVCPVSNYLEQEIEKSFKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPK-LEIVATCSVGLDKI   85 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~i   85 (317)
                      +||+++.++.++..+.|++.+++...... ...++.+.+.++++|+++++...++++++++++|+ ||||++.|+|+|+|
T Consensus         2 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~i   81 (320)
T 1gdh_A            2 KKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHI   81 (320)
T ss_dssp             CEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTTB
T ss_pred             cEEEEcCCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCcccccc
Confidence            58999998888888889887776543221 12344555668899999987767899999999999 99999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccC--cccccccccCCeEEEEecChhHHHH
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG--EFKMTTKFTGKSVGILGMGRIGTAI  163 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~vgIiG~G~iG~~~  163 (317)
                      |+++|+++||.|+|+||+++.+||||+++++|++.|+++++++.+++|.|...  ....+.++.|+||||||+|.||+.+
T Consensus        82 d~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~  161 (320)
T 1gdh_A           82 DLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQAL  161 (320)
T ss_dssp             CHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHH
T ss_pred             cHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999621  1224679999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCC-CCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          164 AKRAEAFDCIIGYNSR-TEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       164 a~~l~~~G~~V~~~~~-~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      |+++++||++|++||+ +....    .+.....++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+
T Consensus       162 A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~  241 (320)
T 1gdh_A          162 AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD  241 (320)
T ss_dssp             HHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGG
T ss_pred             HHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCc
Confidence            9999999999999999 76542    123333489999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102          239 LVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTP  315 (317)
Q Consensus       239 ~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  315 (317)
                      ++|+++|.++|++|+|.||++|||+.||...+|||++||+++|||++++|.+++.++.+.+ +|+.+|++|+++.+.
T Consensus       242 ~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~~~  317 (320)
T 1gdh_A          242 LVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADMSY  317 (320)
T ss_dssp             GBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCCTT
T ss_pred             ccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCccc
Confidence            9999999999999999999999999999545699999999999999999999999999999 999999999988654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=7.3e-65  Score=475.05  Aligned_cols=302  Identities=24%  Similarity=0.396  Sum_probs=272.4

Q ss_pred             CCcEEEEeCCCChhHHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      .+|||++++++.+...+.|++. +++.. .. ....+.+.+.++++|++++++..++++++++++|+||+|++.|+|+|+
T Consensus         4 ~~mkil~~~~~~~~~~~~l~~~~~~v~~-~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~   81 (313)
T 2ekl_A            4 YTVKALITDPIDEILIKTLREKGIQVDY-MP-EISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDN   81 (313)
T ss_dssp             CCCEEEECSCCCHHHHHHHHHTTCEEEE-CT-TCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCTT
T ss_pred             cceEEEEECCCCHHHHHHHHhCCcEEEe-CC-CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCCc
Confidence            3578999999888888888764 55542 21 223344556678999998876678999999999999999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHH
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA  164 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a  164 (317)
                      ||+++|+++||.|+|+||+++.+||||+++++|++.|+++++++.+++|.|..   ..+.+++|+||||||+|.||+.+|
T Consensus        82 id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~l~g~~vgIIG~G~IG~~~A  158 (313)
T 2ekl_A           82 IDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK---IEGLELAGKTIGIVGFGRIGTKVG  158 (313)
T ss_dssp             BCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC---CCCCCCTTCEEEEESCSHHHHHHH
T ss_pred             cCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC---CCCCCCCCCEEEEEeeCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999962   346789999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          165 KRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       165 ~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      +++++||++|++||++....    .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++
T Consensus       159 ~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~v  237 (313)
T 2ekl_A          159 IIANAMGMKVLAYDILDIREKAEKINAK-AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAV  237 (313)
T ss_dssp             HHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGB
T ss_pred             HHHHHCCCEEEEECCCcchhHHHhcCce-ecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCccc
Confidence            99999999999999987542    2232 358999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEeeCCCCCCCCCc---ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 042102          241 DEHELVSALLQGRLGGAGLDVFEHEPDVPE---ELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL  313 (317)
Q Consensus       241 d~~aL~~al~~g~i~ga~lDV~~~EP~~~~---~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  313 (317)
                      |+++|.++|++|+|.||++|||+.||.+++   |||++|||++|||++++|.++.+++.+.+++|+.+|++|+++.
T Consensus       238 d~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l~  313 (313)
T 2ekl_A          238 NGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGMI  313 (313)
T ss_dssp             CHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999998877   8999999999999999999999999999999999999999863

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=2.4e-65  Score=489.79  Aligned_cols=295  Identities=22%  Similarity=0.388  Sum_probs=259.9

Q ss_pred             HHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeC--CCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEEE
Q 042102           22 QEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSA--AAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA   98 (317)
Q Consensus        22 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~   98 (317)
                      +.|++. +++....+....++.+.+.++++|++++..  ..++++++|+++|+||+|+++|+|+||||+++|+++||.|+
T Consensus        61 ~~l~~~g~~v~~~~~~~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~  140 (393)
T 2nac_A           61 KYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVA  140 (393)
T ss_dssp             HHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEE
T ss_pred             HHHHhCCCEEEEecCCCCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEE
Confidence            456553 455543322222334455678999988753  35799999999999999999999999999999999999999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEe
Q 042102           99 NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN  177 (317)
Q Consensus        99 n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~  177 (317)
                      |++++++.+||||++++||++.|++.++++.+++|.|..... ..+.+++|+||||||+|.||+.+|+++++|||+|++|
T Consensus       141 n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~  220 (393)
T 2nac_A          141 EVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT  220 (393)
T ss_dssp             ECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEE
T ss_pred             eCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEE
Confidence            999999999999999999999999999999999999973211 2357899999999999999999999999999999999


Q ss_pred             CCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          178 SRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       178 ~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      +++....     .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|.++|++|
T Consensus       221 d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  300 (393)
T 2nac_A          221 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESG  300 (393)
T ss_dssp             CSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             cCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence            9876432     12333468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q 042102          253 RLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV  316 (317)
Q Consensus       253 ~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  316 (317)
                      +|.||+||||++||.+. +|||++|||++|||+|+.|.+++.++...+++||.+|++|+++.|.+
T Consensus       301 ~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~  365 (393)
T 2nac_A          301 RLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEY  365 (393)
T ss_dssp             SEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGG
T ss_pred             CeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCccee
Confidence            99999999999999765 59999999999999999999999999999999999999999998865

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.3e-65  Score=488.90  Aligned_cols=307  Identities=20%  Similarity=0.311  Sum_probs=269.2

Q ss_pred             CCcEEEEeCCCChhHHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCC--CCCCHHHHhcCCCceEEEECCCCC
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAA--AGADAELIESLPKLEIVATCSVGL   82 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~--~~~~~~~l~~~~~Lk~i~~~~~G~   82 (317)
                      .+|+||+.+...+.+.+.|++. +++..........+.+.+.++++|+++++..  .++++++++++|+||+|+++|+|+
T Consensus        16 ~~~~vl~~d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   95 (364)
T 2j6i_A           16 DEEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGS   95 (364)
T ss_dssp             HCTTCTTBTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCC
T ss_pred             cCceEEEecCccHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCccc
Confidence            4678888888777777777763 6665433221123344566788999887542  468999999999999999999999


Q ss_pred             CcCChhhHhhC--CcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-cccccccCCeEEEEecChh
Q 042102           83 DKIDLARCKEK--GIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRI  159 (317)
Q Consensus        83 d~id~~~~~~~--gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~vgIiG~G~i  159 (317)
                      ||||+++|+++  ||.|+|+||+++.+||||++++||++.|++.++++.+++|.|..... ..+.+++|+||||||+|.|
T Consensus        96 d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~I  175 (364)
T 2j6i_A           96 DHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRI  175 (364)
T ss_dssp             TTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHH
T ss_pred             ccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHH
Confidence            99999999999  99999999999999999999999999999999999999999973211 2467899999999999999


Q ss_pred             HHHHHHHHhhCCCE-EEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEE
Q 042102          160 GTAIAKRAEAFDCI-IGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN  233 (317)
Q Consensus       160 G~~~a~~l~~~G~~-V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN  233 (317)
                      |+.+|+++++|||+ |++||++..+.     .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus       176 G~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn  255 (364)
T 2j6i_A          176 GYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVN  255 (364)
T ss_dssp             HHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEE
Confidence            99999999999997 99999876432     2333345899999999999999999999999999999999999999999


Q ss_pred             eCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCC--C---ceEEcccCCCccHHHHHHHHHHHHHHHHHHH
Q 042102          234 IGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGL--E---NVVLLPHVASATVETRKAMADLVVGNLQAHF  307 (317)
Q Consensus       234 ~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~--p---nvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~  307 (317)
                      +|||+++|+++|+++|++|+|+||+||||++||++. +|||.+  |   ||++|||+||+|.++..++...+++|+.+|+
T Consensus       256 ~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~  335 (364)
T 2j6i_A          256 TARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFF  335 (364)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999875 589999  9   9999999999999999999999999999999


Q ss_pred             CCCCC
Q 042102          308 GKKPL  312 (317)
Q Consensus       308 ~g~~~  312 (317)
                      +|+++
T Consensus       336 ~g~~~  340 (364)
T 2j6i_A          336 TGKFD  340 (364)
T ss_dssp             TTCCC
T ss_pred             cCCCC
Confidence            99944

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=8.9e-64  Score=473.13  Aligned_cols=312  Identities=24%  Similarity=0.324  Sum_probs=268.8

Q ss_pred             CCCcEEEEeCCCC-hhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCC
Q 042102            5 SNNIIVLMVCPVS-NYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLD   83 (317)
Q Consensus         5 ~~~~~vl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   83 (317)
                      +.||+|++.+... +..++.++..+++..+ +....+++.++...++|+++++...++++++++++|+||+|+++|+|+|
T Consensus        19 ~~kp~i~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   97 (347)
T 1mx3_A           19 SHMPLVALLDGRDCTVEMPILKDVATVAFC-DAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   97 (347)
T ss_dssp             --CCEEEESSCSCCTTTHHHHTTTCEEEEC-CCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCCCEEEEEcCCcchhhHHHhhccceEEec-CCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcccccC
Confidence            4589999998432 2235677776766654 3332334433334567888877777899999999999999999999999


Q ss_pred             cCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-----cc-cccccCCeEEEEecC
Q 042102           84 KIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-----KM-TTKFTGKSVGILGMG  157 (317)
Q Consensus        84 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~-~~~l~g~~vgIiG~G  157 (317)
                      +||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|.....     .. +.+++|+||||||+|
T Consensus        98 ~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G  177 (347)
T 1mx3_A           98 NIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLG  177 (347)
T ss_dssp             TBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCS
T ss_pred             cccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeEC
Confidence            999999999999999999999999999999999999999999999999999963211     01 268999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEE
Q 042102          158 RIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN  233 (317)
Q Consensus       158 ~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN  233 (317)
                      .||+.+|+++++||++|++||++..+.    .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus       178 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  257 (347)
T 1mx3_A          178 RVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN  257 (347)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEE
Confidence            999999999999999999999876432    1223345899999999999999999999999999999999999999999


Q ss_pred             eCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC--cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102          234 IGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP--EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP  311 (317)
Q Consensus       234 ~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~--~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  311 (317)
                      +|||+++|+++|.++|++|+|.||++|||+.||.+.  ++||.+||+++|||+|++|.++..++.+.+++|+.+|++|++
T Consensus       258 ~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  337 (347)
T 1mx3_A          258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRI  337 (347)
T ss_dssp             CSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999763  589999999999999999999999999999999999999987


Q ss_pred             CC---CCCC
Q 042102          312 LL---TPVV  317 (317)
Q Consensus       312 ~~---~~v~  317 (317)
                      +.   |.|+
T Consensus       338 ~~~l~~~v~  346 (347)
T 1mx3_A          338 PDSLKNCVN  346 (347)
T ss_dssp             TTTCSSBCC
T ss_pred             CcccCCCCC
Confidence            65   5553

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=8.5e-63  Score=464.76  Aligned_cols=308  Identities=32%  Similarity=0.486  Sum_probs=276.3

Q ss_pred             CCcEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   85 (317)
                      ||+|||+++++.++..+.|++.+++....  ....+.+.+.++++|++++++..++++++++++|+||+|++.|+|+|+|
T Consensus         1 m~~~il~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (333)
T 2d0i_A            1 MRPKVGVLLKMKREALEELKKYADVEIIL--YPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNI   78 (333)
T ss_dssp             CCSEEEECSCCCHHHHHHHHTTSEEEECC--SCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred             CCcEEEEECCCCHHHHHHHHhcCCEEEeC--CCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            36899999998888888998877766532  2233444556789999987777789999999999999999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc-cccc----ccccCCeEEEEecChhH
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE-FKMT----TKFTGKSVGILGMGRIG  160 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~-~~~~----~~l~g~~vgIiG~G~iG  160 (317)
                      |+++|+++||.|+|+||+++.+||||+++++|++.|++.++++.+++|.|.... ...+    .+++|++|||||+|.||
T Consensus        79 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG  158 (333)
T 2d0i_A           79 DLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIG  158 (333)
T ss_dssp             CHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHH
T ss_pred             cHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHH
Confidence            999999999999999999999999999999999999999999999999996311 1235    78999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          161 TAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       161 ~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      +.+|++++++|++|++||++....    .+.. ..++++++++||+|++|+|.+++|+++++++.++.||+| ++||+||
T Consensus       159 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~sr  236 (333)
T 2d0i_A          159 KAIARRLIPFGVKLYYWSRHRKVNVEKELKAR-YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGR  236 (333)
T ss_dssp             HHHHHHHGGGTCEEEEECSSCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSC
T ss_pred             HHHHHHHHHCCCEEEEECCCcchhhhhhcCce-ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCC
Confidence            999999999999999999987542    1222 348999999999999999999999999999999999999 9999999


Q ss_pred             CcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCC-ceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102          237 GLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLE-NVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTP  315 (317)
Q Consensus       237 g~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~p-nvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  315 (317)
                      |.++|+++|.++|++|+|.||++|||++||.+.++||++| ||++|||+++.|.++..++.+.+++|+.+|++|+++.|.
T Consensus       237 g~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~  316 (333)
T 2d0i_A          237 GALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDL  316 (333)
T ss_dssp             GGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             CcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcCc
Confidence            9999999999999999999999999999997766999999 999999999999999999999999999999999999887


Q ss_pred             CC
Q 042102          316 VV  317 (317)
Q Consensus       316 v~  317 (317)
                      |+
T Consensus       317 v~  318 (333)
T 2d0i_A          317 VN  318 (333)
T ss_dssp             SC
T ss_pred             cC
Confidence            75

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.7e-63  Score=460.67  Aligned_cols=291  Identities=23%  Similarity=0.299  Sum_probs=261.7

Q ss_pred             cEEEEeCCCChhHHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCC
Q 042102            8 IIVLMVCPVSNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKID   86 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   86 (317)
                      ||||++.++.+...+.|++. +++.            .+.++++|+++++.   .+.++++++|+||||+++|+|+|+||
T Consensus         1 m~il~~~~~~~~~~~~l~~~~~~v~------------~~~~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~d~id   65 (303)
T 1qp8_A            1 MELYVNFELPPEAEEELRKYFKIVR------------GGDLGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGLDHLP   65 (303)
T ss_dssp             CEEECCSCCCHHHHHHHHTTCEEEC------------SSCCTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCCTTSC
T ss_pred             CEEEEccCCCHHHHHHHHhcCCccc------------hhhhCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCccccc
Confidence            48999999888888888764 3221            13467889888753   46799999999999999999999999


Q ss_pred             hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHH
Q 042102           87 LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKR  166 (317)
Q Consensus        87 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~  166 (317)
                      ++++ ++||.|+|++|+++.+||||++++||++.|++.++++.+++|.|...  ....+++|+||||||+|.||+.+|++
T Consensus        66 ~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~--~~~~~l~g~~vgIIG~G~IG~~~A~~  142 (303)
T 1qp8_A           66 WESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD--VEIPLIQGEKVAVLGLGEIGTRVGKI  142 (303)
T ss_dssp             CTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--SCCCCCTTCEEEEESCSTHHHHHHHH
T ss_pred             HHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC--CCCCCCCCCEEEEEccCHHHHHHHHH
Confidence            9885 79999999999999999999999999999999999999999999642  12358999999999999999999999


Q ss_pred             HhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHH
Q 042102          167 AEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV  246 (317)
Q Consensus       167 l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~  246 (317)
                      +++||++|++|+++.. ..+.....++++++++||+|++|+|++++|+++|+++.|+.||+|+++||+|||+++|+++|.
T Consensus       143 l~~~G~~V~~~dr~~~-~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~  221 (303)
T 1qp8_A          143 LAALGAQVRGFSRTPK-EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVL  221 (303)
T ss_dssp             HHHTTCEEEEECSSCC-CSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHH
T ss_pred             HHHCCCEEEEECCCcc-ccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHH
Confidence            9999999999998775 223334568999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCceEEEeeCC-CCCCCCC-cccCCCCceEEcccCCCc--cHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          247 SALLQGRLGGAGLDVF-EHEPDVP-EELIGLENVVLLPHVASA--TVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       247 ~al~~g~i~ga~lDV~-~~EP~~~-~~L~~~pnvi~tPH~a~~--t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      ++|++|+|.||++||| ++||++. +|||++||+++|||+||+  |.++++++.+.+++|+.+|++|+++.|.|+
T Consensus       222 ~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~  296 (303)
T 1qp8_A          222 RILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAK  296 (303)
T ss_dssp             HHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCC
T ss_pred             HHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCceeC
Confidence            9999999999999999 8899875 589999999999999998  999999999999999999999999988875

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=1.1e-62  Score=466.59  Aligned_cols=309  Identities=26%  Similarity=0.411  Sum_probs=270.5

Q ss_pred             CcEEEEeCC-C--ChhHHHHHHhcCeEEEecCCCChHHHHhhccC-----CceEEEEe------CCCCCCHHHHhcCC-C
Q 042102            7 NIIVLMVCP-V--SNYLEQEIEKSFKVFKLWHFEDKEQFINTHKD-----SIQAVVGS------AAAGADAELIESLP-K   71 (317)
Q Consensus         7 ~~~vl~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ii~~------~~~~~~~~~l~~~~-~   71 (317)
                      +||||++++ .  .+..++.|++.+++..+. ..+.++++ +.+.     ++|+++..      ...++++++|+++| +
T Consensus         3 ~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~   80 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDLWSDFQQKFEVIPAN-LTTHDGFK-QALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSS   80 (348)
T ss_dssp             CCEEEECSSCCSSCHHHHHHHHHHSEEEECC-CCCHHHHH-HHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTT
T ss_pred             CcEEEEECCccccChHHHHHHHhcceEEecC-CCCHHHHH-HHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccC
Confidence            689999987 4  355677888778876533 22233443 3333     78888764      24589999999998 6


Q ss_pred             ceEEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCC---CccCc---cccccc
Q 042102           72 LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGE---WKKGE---FKMTTK  145 (317)
Q Consensus        72 Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~---w~~~~---~~~~~~  145 (317)
                      ||+|+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++.++++.+++|.   |....   ...+.+
T Consensus        81 Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~  160 (348)
T 2w2k_A           81 LKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHN  160 (348)
T ss_dssp             CCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCC
T ss_pred             ceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999   94211   124678


Q ss_pred             ccCCeEEEEecChhHHHHHHHHh-hCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|++|||||+|.||+.+|++++ +||++|++||++....     .+.....++++++++||+|++|+|.+++|++++++
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~  240 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE  240 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCH
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhH
Confidence            99999999999999999999999 9999999999876532     13333458999999999999999999999999999


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHH
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLV  299 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~  299 (317)
                      +.++.||+|++|||+|||+++|+++|.++|++|+|.||++|||++||...++||++|||++|||+|+.|.++..++.+.+
T Consensus       241 ~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~  320 (348)
T 2w2k_A          241 AFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLT  320 (348)
T ss_dssp             HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999555689999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCC
Q 042102          300 VGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       300 ~~nl~~~~~g~~~~~~v~  317 (317)
                      ++|+.+|++|+++.|.|+
T Consensus       321 ~~ni~~~~~g~~~~~~v~  338 (348)
T 2w2k_A          321 MTNIDRFLLQGKPLLTPA  338 (348)
T ss_dssp             HHHHHHHHHTCCCCSSBC
T ss_pred             HHHHHHHHcCCCCcceec
Confidence            999999999999988875

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=2.6e-62  Score=461.79  Aligned_cols=310  Identities=42%  Similarity=0.604  Sum_probs=276.7

Q ss_pred             CcEEEEeCCCChhHHHHHHhcCeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102            7 NIIVLMVCPVSNYLEQEIEKSFKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         7 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   85 (317)
                      ++||+++.++.+...+.|++.+++...... +..++.+.+.+.++|+++++...++++++++++|+||||++.|+|+|+|
T Consensus         2 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   81 (334)
T 2dbq_A            2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNI   81 (334)
T ss_dssp             CCEEEESSCCCHHHHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CcEEEEecCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            468999998888888889887877653322 1234455566889999998776789999999999999999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCc----c-C-cccccccccCCeEEEEecChh
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK----K-G-EFKMTTKFTGKSVGILGMGRI  159 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~----~-~-~~~~~~~l~g~~vgIiG~G~i  159 (317)
                      |+++++++||.|+|+||+++.+||||+++++|++.|+++++++.+++|.|.    . . ....+.++.|++|||||+|.|
T Consensus        82 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~i  161 (334)
T 2dbq_A           82 DIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRI  161 (334)
T ss_dssp             CHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHH
T ss_pred             cHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHH
Confidence            999999999999999999999999999999999999999999999999995    1 1 112367899999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          160 GTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       160 G~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      |+.+|++++++|++|++|+++....    .+. ...++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|
T Consensus       162 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~-~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~s  240 (334)
T 2dbq_A          162 GQAIAKRAKGFNMRILYYSRTRKEEVERELNA-EFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA  240 (334)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCHHHHHHHCC-EECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHHHHhCCCEEEEECCCcchhhHhhcCc-ccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence            9999999999999999999987541    122 23589999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102          236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTP  315 (317)
Q Consensus       236 rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  315 (317)
                      ||.++|+++|.++|++|+|.||++|||++||...++||++|||++|||+|+.|.++..++.+.+++|+.+|++|+++.|.
T Consensus       241 rg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~  320 (334)
T 2dbq_A          241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPTL  320 (334)
T ss_dssp             CGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             CCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence            99999999999999999999999999999994445999999999999999999999999999999999999999999888


Q ss_pred             CC
Q 042102          316 VV  317 (317)
Q Consensus       316 v~  317 (317)
                      |+
T Consensus       321 v~  322 (334)
T 2dbq_A          321 VN  322 (334)
T ss_dssp             SC
T ss_pred             cC
Confidence            75

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=4.5e-62  Score=459.53  Aligned_cols=313  Identities=30%  Similarity=0.464  Sum_probs=276.8

Q ss_pred             CCCCcEEEEeCCCChhHHHHHHhc--CeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcC-CCceEEEECC
Q 042102            4 NSNNIIVLMVCPVSNYLEQEIEKS--FKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESL-PKLEIVATCS   79 (317)
Q Consensus         4 ~~~~~~vl~~~~~~~~~~~~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~-~~Lk~i~~~~   79 (317)
                      ++++|||++++++.+...+.|++.  +++...... ....+.+.+.++++|++++++..++++++++++ |+||||++.|
T Consensus         5 ~~~~~~il~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~   84 (330)
T 2gcg_A            5 PVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMS   84 (330)
T ss_dssp             --CCEEEEESSCCCHHHHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECC
Confidence            345789999998888888888876  666543211 123445556678999998877778999999999 9999999999


Q ss_pred             CCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCcc-C-cccccccccCCeEEEEecC
Q 042102           80 VGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKK-G-EFKMTTKFTGKSVGILGMG  157 (317)
Q Consensus        80 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~-~-~~~~~~~l~g~~vgIiG~G  157 (317)
                      +|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|++.++++.+++|.|.. . ....+.+++|++|||||+|
T Consensus        85 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G  164 (330)
T 2gcg_A           85 VGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLG  164 (330)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCS
T ss_pred             cccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcC
Confidence            9999999999999999999999999999999999999999999999999999999963 1 1224678999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEE
Q 042102          158 RIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI  232 (317)
Q Consensus       158 ~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV  232 (317)
                      .||+.+|++++++|++|++|+++....     .+... .++++++++||+|++|+|.+++|+++++++.++.||+|+++|
T Consensus       165 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailI  243 (330)
T 2gcg_A          165 RIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEF-VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFI  243 (330)
T ss_dssp             HHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCcee-CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEE
Confidence            999999999999999999999875421     12222 389999999999999999999999999999999999999999


Q ss_pred             EeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102          233 NIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP  311 (317)
Q Consensus       233 N~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  311 (317)
                      |+|||.++|+++|.++|++|++.|+++|||++||+++ ++||++|||++|||+|+.|.++..++...+++|+.+|++|++
T Consensus       244 n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~  323 (330)
T 2gcg_A          244 NISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEP  323 (330)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999765 589999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 042102          312 LLTPVV  317 (317)
Q Consensus       312 ~~~~v~  317 (317)
                      +.|.|+
T Consensus       324 ~~~~v~  329 (330)
T 2gcg_A          324 MPSELK  329 (330)
T ss_dssp             CTTEEC
T ss_pred             CCCCCC
Confidence            998875

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=7.9e-62  Score=462.39  Aligned_cols=280  Identities=22%  Similarity=0.304  Sum_probs=246.8

Q ss_pred             CCcEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   85 (317)
                      +.||||+.+.+ +...+.+++..++......+...    +.+.++|++++++.+++++++++ .++||||+++|+|+|||
T Consensus         2 ~mmkIl~~~~~-p~~~~~~~~~~~v~~~~~~~~~~----~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~i   75 (381)
T 3oet_A            2 NAMKILVDENM-PYARELFSRLGEVKAVPGRPIPV----EELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDHV   75 (381)
T ss_dssp             CCCEEEEETTS-TTHHHHHTTSSEEEEECC---CH----HHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTTB
T ss_pred             CceEEEECCCC-cHHHHHHhhCCcEEEeCCCCCCH----HHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEcccccccc
Confidence            44899998876 45566777767666532221122    33678999999877889999999 57799999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHH
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAK  165 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~  165 (317)
                      |+++|+++||.|+|+||+++.+||||+++++|++.|+.                   +.+++|+||||||+|.||+.+|+
T Consensus        76 D~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~-------------------g~~l~gktvGIIGlG~IG~~vA~  136 (381)
T 3oet_A           76 DEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD-------------------GFSLRDRTIGIVGVGNVGSRLQT  136 (381)
T ss_dssp             CHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT-------------------TCCGGGCEEEEECCSHHHHHHHH
T ss_pred             CHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc-------------------CCccCCCEEEEEeECHHHHHHHH
Confidence            99999999999999999999999999999999998863                   34699999999999999999999


Q ss_pred             HHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChh----hhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          166 RAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       166 ~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~----t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      ++++|||+|++||+............++++++++||+|++|+|++++    |+++|+++.|+.||+|++|||+|||++||
T Consensus       137 ~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvd  216 (381)
T 3oet_A          137 RLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVD  216 (381)
T ss_dssp             HHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred             HHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence            99999999999998543222233467899999999999999999999    99999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102          242 EHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP  311 (317)
Q Consensus       242 ~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  311 (317)
                      +++|+++|++|++.||+||||++||+++++||.++ +++|||+||+|.|+..++..++++|+.+|+++.+
T Consensus       217 e~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~  285 (381)
T 3oet_A          217 NAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ  285 (381)
T ss_dssp             HHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999888899875 8999999999999999999999999999998754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=2.2e-60  Score=473.52  Aligned_cols=309  Identities=28%  Similarity=0.413  Sum_probs=277.3

Q ss_pred             CCCcEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102            5 SNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK   84 (317)
Q Consensus         5 ~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   84 (317)
                      +.+||||+++++.+...+.|++.+++.... .. ..+.+.+.++++|++++++.+++++++++++|+||||+++|+|+||
T Consensus         2 m~~~~vl~~~~~~~~~~~~l~~~~~v~~~~-~~-~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   79 (529)
T 1ygy_A            2 VSLPVVLIADKLAPSTVAALGDQVEVRWVD-GP-DRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDN   79 (529)
T ss_dssp             -CCCEEEECSSCCGGGGTTSCSSSEEEECC-TT-SHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTT
T ss_pred             CCCcEEEEeCCCCHHHHHHHhcCceEEEcC-CC-CHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcCc
Confidence            457899999998888777777767766532 22 3344556678999999887789999999999999999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHH
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA  164 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a  164 (317)
                      ||+++|+++||.|+|+|++++.+||||++++||+++|+++++++.+++|.|.+.. ..+.+++|+||||||+|.||+++|
T Consensus        80 id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~l~g~~vgIIG~G~IG~~vA  158 (529)
T 1ygy_A           80 VDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSS-FSGTEIFGKTVGVVGLGRIGQLVA  158 (529)
T ss_dssp             BCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG-CCBCCCTTCEEEEECCSHHHHHHH
T ss_pred             cCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccC-cCccccCCCEEEEEeeCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997532 247899999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102          165 KRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       165 ~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      ++|+++|++|++||++....    .+... .++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||.++
T Consensus       159 ~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv  237 (529)
T 1ygy_A          159 QRIAAFGAYVVAYDPYVSPARAAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV  237 (529)
T ss_dssp             HHHHTTTCEEEEECTTSCHHHHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSB
T ss_pred             HHHHhCCCEEEEECCCCChhHHHhcCcEE-cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchh
Confidence            99999999999999876321    12222 38999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102          241 DEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV  317 (317)
Q Consensus       241 d~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  317 (317)
                      |+++|+++|++|++.||++|||+.||...++||++||+++|||+++.|.++++++...+++|+.+|++|+++.+.|+
T Consensus       238 ~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v~  314 (529)
T 1ygy_A          238 DEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  314 (529)
T ss_dssp             CHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             hHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999999999999877799999999999999999999999999999999999999998777653

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.1e-60  Score=441.25  Aligned_cols=279  Identities=23%  Similarity=0.297  Sum_probs=243.4

Q ss_pred             EEEEeCCCChhHHHHHH---hcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102            9 IVLMVCPVSNYLEQEIE---KSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         9 ~vl~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   85 (317)
                      +|.+..++.....+...   +.+....+           +.++++|+++++ ...+      ++|+||||+++|+|+|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~ad~li~~-~~~~------~~~~Lk~I~~~~~G~d~i   63 (290)
T 3gvx_A            2 DVYVNFPADGHVREIAKTVLDGFDLHWY-----------PDYYDAEAQVIK-DRYV------LGKRTKMIQAISAGVDHI   63 (290)
T ss_dssp             CEEECSCCCHHHHHHHHHHTTTSCEEET-----------TSCCCCSEEEES-SCCC------CCSSCCEEEECSSCCTTS
T ss_pred             ceEEecCCcchHHHHHHHHhcccccccC-----------cchhhhhhhhhh-hhhh------hhhhhHHHHHHhcCCcee
Confidence            56677777665544333   23443321           346789999883 3332      789999999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHH
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAK  165 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~  165 (317)
                      |+++|++++|.++| +|.++.+||||+++++|++.|++.++++.+++|.|.+..   ..+++|+||||||+|.||+++|+
T Consensus        64 d~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~---~~~l~g~tvGIIGlG~IG~~vA~  139 (290)
T 3gvx_A           64 DVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP---TTLLYGKALGILGYGGIGRRVAH  139 (290)
T ss_dssp             CGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC---CCCCTTCEEEEECCSHHHHHHHH
T ss_pred             ecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCC---ceeeecchheeeccCchhHHHHH
Confidence            99999987766655 588999999999999999999999999999999998532   36899999999999999999999


Q ss_pred             HHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHH
Q 042102          166 RAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL  245 (317)
Q Consensus       166 ~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL  245 (317)
                      ++++|||+|++||++...........++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|
T Consensus       140 ~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL  219 (290)
T 3gvx_A          140 LAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDM  219 (290)
T ss_dssp             HHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHH
T ss_pred             HHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcch
Confidence            99999999999999876554444556899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCC-CccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102          246 VSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVA-SATVETRKAMADLVVGNLQAHFGKKP  311 (317)
Q Consensus       246 ~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a-~~t~~~~~~~~~~~~~nl~~~~~g~~  311 (317)
                      +++|++|++.||++|||++||.  +|||++|||++|||+| ++|.++.+++.+.+++||.+|++|+.
T Consensus       220 ~~aL~~g~i~ga~lDV~~~EP~--~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          220 IGFLKERSDVWYLSDVWWNEPE--ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             HHHHHHCTTCEEEESCCTTTTS--CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             hhhhhhccceEEeeccccCCcc--cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence            9999999999999999999998  8999999999999999 89999999999999999999999874

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.7e-59  Score=443.12  Aligned_cols=279  Identities=19%  Similarity=0.288  Sum_probs=244.8

Q ss_pred             cEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCCh
Q 042102            8 IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDL   87 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   87 (317)
                      |||++.+..+ ...+.+++..++......    +...+.++++|++++++.+++++++++ +|+||||+++++|+||||+
T Consensus         1 mkil~~~~~~-~~~~~~~~~~~v~~~~~~----~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~   74 (380)
T 2o4c_A            1 MRILADENIP-VVDAFFADQGSIRRLPGR----AIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLDL   74 (380)
T ss_dssp             CEEEEETTCT-THHHHHGGGSEEEEECGG----GCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBCH
T ss_pred             CEEEEecCch-HHHHHHHhCCcEEEecCC----cCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhhH
Confidence            5888887654 455666666665542211    112234688999998877889999999 8999999999999999999


Q ss_pred             hhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH
Q 042102           88 ARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA  167 (317)
Q Consensus        88 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l  167 (317)
                      ++++++||.|+|+||+++.+||||+++++|++.|+.                   +.+++|+||||||+|+||+.+|++|
T Consensus        75 ~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~-------------------~~~l~g~tvGIIGlG~IG~~vA~~l  135 (380)
T 2o4c_A           75 DYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR-------------------GADLAERTYGVVGAGQVGGRLVEVL  135 (380)
T ss_dssp             HHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH-------------------TCCGGGCEEEEECCSHHHHHHHHHH
T ss_pred             HHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh-------------------hcccCCCEEEEEeCCHHHHHHHHHH
Confidence            999999999999999999999999999999999873                   2469999999999999999999999


Q ss_pred             hhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChh----hhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102          168 EAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       168 ~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~----t~~li~~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ++||++|++||++...........++++++++||+|++|+|++++    |+++++++.|+.||+|+++||+|||+++|++
T Consensus       136 ~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~  215 (380)
T 2o4c_A          136 RGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQ  215 (380)
T ss_dssp             HHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHH
T ss_pred             HHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHH
Confidence            999999999997643221112356899999999999999999999    9999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCC
Q 042102          244 ELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPL  312 (317)
Q Consensus       244 aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  312 (317)
                      +|+++|++|+|.||+||||++||.++++|+. +|+++|||+||+|.++..++...+++|+.+|++|++.
T Consensus       216 aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~  283 (380)
T 2o4c_A          216 ALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAER  283 (380)
T ss_dssp             HHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999987778887 4999999999999999999999999999999999863

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=2.6e-37  Score=302.39  Aligned_cols=222  Identities=14%  Similarity=0.160  Sum_probs=189.8

Q ss_pred             CCceEEE-ECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccC
Q 042102           70 PKLEIVA-TCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTG  148 (317)
Q Consensus        70 ~~Lk~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g  148 (317)
                      |+++.|+ .+++|+|++  +++.++||.++|++++++ +|||+.       +|++....+.+..| |.+   ..+.++.|
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~---~~g~~L~G  277 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR---ATDVMIAG  277 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH---HHCCCCTT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh---ccccccCC
Confidence            8899998 889999998  789999999999999999 999953       47776665555556 753   23568999


Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      ++|||||+|.||+.+|+++++||++|+++++++...     .++ ...++++++++||+|++|+    .|+++|+++.|+
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~  352 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGY-RVVTMEYAADKADIFVTAT----GNYHVINHDHMK  352 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECS----SSSCSBCHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCC-EeCCHHHHHhcCCEEEECC----CcccccCHHHHh
Confidence            999999999999999999999999999999886432     122 2458999999999999997    588999999999


Q ss_pred             ccCCCcEEEEeCCCcc-cCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCC--CceEEcccCC-CccHH-HHHHHHH
Q 042102          224 ALGPKGVLINIGRGLL-VDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGL--ENVVLLPHVA-SATVE-TRKAMAD  297 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~-vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~--pnvi~tPH~a-~~t~~-~~~~~~~  297 (317)
                      .||+|++|||+|||++ ||+++| ++|++|+|+ +++||   ||+++ +|||.+  ||+++| |+| |++.+ ...+++.
T Consensus       353 ~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~  426 (494)
T 3d64_A          353 AMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFTN  426 (494)
T ss_dssp             HCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHHH
T ss_pred             hCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHHH
Confidence            9999999999999999 699999 999999997 55555   46554 589988  999999 999 66754 6788999


Q ss_pred             HHHHHHHHHHCCCCCCCCC
Q 042102          298 LVVGNLQAHFGKKPLLTPV  316 (317)
Q Consensus       298 ~~~~nl~~~~~g~~~~~~v  316 (317)
                      .+++|+..|++|+++.+.|
T Consensus       427 ~~~~ni~~~~~g~~~~n~V  445 (494)
T 3d64_A          427 QTLAQIELFTRGGEYANKV  445 (494)
T ss_dssp             HHHHHHHHHHHGGGSCSSE
T ss_pred             HHHHHHHHHHcCCCCCCce
Confidence            9999999999999988876

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=6.3e-37  Score=298.71  Aligned_cols=225  Identities=13%  Similarity=0.141  Sum_probs=196.4

Q ss_pred             CCCceEEE-ECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCccccccccc
Q 042102           69 LPKLEIVA-TCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFT  147 (317)
Q Consensus        69 ~~~Lk~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~  147 (317)
                      +|+++.|+ .+++|+|++  +++.++||.++|+++++. +|+|       +++|++..+.+.+++| |.+   ..+.++.
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r---~~~~~l~  256 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR---ATDFLIS  256 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH---HHCCCCT
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh---ccccccC
Confidence            47899998 889999998  789999999999999999 9999       3468888888888888 863   2356899


Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      |++|||||+|.||+.+|+++++||++|+++++++...     .++ ...++++++++||+|++|+    .|+++|+++.|
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l  331 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCT----GNVDVIKLEHL  331 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECC----SSSSSBCHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC-EecCHHHHHhcCCEEEECC----ChhhhcCHHHH
Confidence            9999999999999999999999999999999886432     222 3468999999999999995    68999999999


Q ss_pred             hccCCCcEEEEeCCCcc-cCHHHHHH--HHHhCCceEEEeeCCCCCCCCCcccCCC--CceEEcccCC-CccHH-HHHHH
Q 042102          223 NALGPKGVLINIGRGLL-VDEHELVS--ALLQGRLGGAGLDVFEHEPDVPEELIGL--ENVVLLPHVA-SATVE-TRKAM  295 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~-vd~~aL~~--al~~g~i~ga~lDV~~~EP~~~~~L~~~--pnvi~tPH~a-~~t~~-~~~~~  295 (317)
                      +.||+|++|||+|||++ ||+++|.+  +|++|+|+ +++|||+.++  .++||.+  ||+++| |+| |++.+ ....+
T Consensus       332 ~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H~atghp~e~~~~s~  407 (479)
T 1v8b_A          332 LKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-GCATGHPAFVMSFSF  407 (479)
T ss_dssp             TTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-HSSCCSCHHHHHHHH
T ss_pred             hhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-eccCCCCchhHHHHH
Confidence            99999999999999999 99999999  99999998 8999984422  3588888  999999 999 66766 67888


Q ss_pred             HHHHHHHHHHHHCCC--CCCCCC
Q 042102          296 ADLVVGNLQAHFGKK--PLLTPV  316 (317)
Q Consensus       296 ~~~~~~nl~~~~~g~--~~~~~v  316 (317)
                      +..+++|+..|++|+  ++.|.|
T Consensus       408 a~~~~~ni~~~~~g~~~~l~n~V  430 (479)
T 1v8b_A          408 CNQTFAQLDLWQNKDTNKYENKV  430 (479)
T ss_dssp             HHHHHHHHHHHHTTTSSSCCSSE
T ss_pred             HHHHHHHHHHHHcCCCCcCCcce
Confidence            899999999999999  888765

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=2.6e-29  Score=232.30  Aligned_cols=205  Identities=14%  Similarity=0.164  Sum_probs=162.7

Q ss_pred             CCCcEEEEeCCC--ChhHHHHHHh-cCeEEEecC-CCC-------hHHHHhhccCCceEEEEe----------------C
Q 042102            5 SNNIIVLMVCPV--SNYLEQEIEK-SFKVFKLWH-FED-------KEQFINTHKDSIQAVVGS----------------A   57 (317)
Q Consensus         5 ~~~~~vl~~~~~--~~~~~~~l~~-~~~~~~~~~-~~~-------~~~~~~~~~~~~~~ii~~----------------~   57 (317)
                      ..+|||++....  ..+..+.|.+ .+++..... ..+       ..+.+.+.++++|+++++                .
T Consensus         3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            446788888743  3345667766 466654321 110       123345567789999875                2


Q ss_pred             CCCCCHHHHhcCCCceEEEECCCCCCcCCh-hhHhhCCcEEEeCC------CCCcHHHHHHHHHHHHHHhhchhHHHHHH
Q 042102           58 AAGADAELIESLPKLEIVATCSVGLDKIDL-ARCKEKGIRVANTP------DVLTDDVADLAIGLILAVLRRICESDRYV  130 (317)
Q Consensus        58 ~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~-~~~~~~gI~v~n~~------~~~~~~vAE~al~~~L~~~r~~~~~~~~~  130 (317)
                      ..++++++++.+|+||+|+   +|+|++|+ ++++++||.|+|++      ++++.+|||++++++|..           
T Consensus        83 ~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~-----------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH-----------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred             CccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh-----------
Confidence            3468999999999999998   89999998 89999999999998      889999999999998863           


Q ss_pred             HcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc--cCCHHHhcccCCEE
Q 042102          131 RSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY--YPNLIDLASNCQIL  203 (317)
Q Consensus       131 ~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~--~~~l~el~~~aDvV  203 (317)
                                 .+.++.|++|||||+|.||+.+|++++++|++|++++++..+.     .+...  ..++++++++||+|
T Consensus       149 -----------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvV  217 (293)
T 3d4o_A          149 -----------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVC  217 (293)
T ss_dssp             -----------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEE
T ss_pred             -----------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEE
Confidence                       1346899999999999999999999999999999999876432     12221  24688999999999


Q ss_pred             EEeccCChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102          204 VVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       204 ~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      ++|+|.     ++++++.++.||+|+++||++||+.
T Consensus       218 i~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          218 INTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             EECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            999995     6889999999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.94  E-value=1.2e-26  Score=215.12  Aligned_cols=211  Identities=13%  Similarity=0.185  Sum_probs=157.2

Q ss_pred             CCCcEEEEeCCC--ChhHHHHHHh-cCeEEEec-CCCC-------hHHHHhhccCCceEEEEe----C----------CC
Q 042102            5 SNNIIVLMVCPV--SNYLEQEIEK-SFKVFKLW-HFED-------KEQFINTHKDSIQAVVGS----A----------AA   59 (317)
Q Consensus         5 ~~~~~vl~~~~~--~~~~~~~l~~-~~~~~~~~-~~~~-------~~~~~~~~~~~~~~ii~~----~----------~~   59 (317)
                      +..|||++....  ..+..+.|.+ .+++.... ...+       ..+.+.+.++++|+++.+    .          ..
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            346789999753  3345566765 46665322 1111       112234556789998872    1          34


Q ss_pred             C--CCHHHHhcCCCceEEEECCCCCCcCC-hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCc
Q 042102           60 G--ADAELIESLPKLEIVATCSVGLDKID-LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK  136 (317)
Q Consensus        60 ~--~~~~~l~~~~~Lk~i~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~  136 (317)
                      +  +++++++.+|++|+|+   +|+|++| +++|+++||.|+|+|+++  ++         ++.|+++.+     +|.|.
T Consensus        85 ~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~  145 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIM  145 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHH
T ss_pred             CccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHH
Confidence            5  7899999999999998   8999999 899999999999999964  33         335666554     34453


Q ss_pred             cCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc--ccCCHHHhcccCCEEEEeccC
Q 042102          137 KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK--YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       137 ~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~--~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ......+.+++|++|||||+|.||+.+|++++++|++|.+++++..+.     .+..  ...++++++++||+|++|+|.
T Consensus       146 ~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          146 LAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             HHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred             HHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh
Confidence            211123568999999999999999999999999999999999876432     1222  135788999999999999996


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                           ++++++.++.||+|+++||++||+.
T Consensus       226 -----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          226 -----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             -----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             -----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence                 6889999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.92  E-value=2.1e-26  Score=225.88  Aligned_cols=224  Identities=13%  Similarity=0.154  Sum_probs=177.0

Q ss_pred             CCce-EEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccC
Q 042102           70 PKLE-IVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTG  148 (317)
Q Consensus        70 ~~Lk-~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g  148 (317)
                      ++++ ++-.+++|+|++  .++.++||.++|+++.+. +|+|+.       +|++.........+ |.+   ..+..+.|
T Consensus       209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r---~~~~~l~G  274 (494)
T 3ce6_A          209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INR---GTDALIGG  274 (494)
T ss_dssp             HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHH---HHCCCCTT
T ss_pred             cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHh---ccCCCCCc
Confidence            3444 445889999998  678899999999999998 999953       45554443333333 432   11346899


Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      ++|+|+|+|.||+.+|++++++|++|+++++++...     .++. ..+++++++++|+|+.|++    +.++++++.|+
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~  349 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDIIMLEHIK  349 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCSBCHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHHHHHHHHH
Confidence            999999999999999999999999999999876432     2333 3578899999999999975    56788989999


Q ss_pred             ccCCCcEEEEeCCCcc-cCHHHHHH-HHHhCCceEEEeeCCCCCCC-CCcccCCCCceE----EcccCCCccHHHHHHHH
Q 042102          224 ALGPKGVLINIGRGLL-VDEHELVS-ALLQGRLGGAGLDVFEHEPD-VPEELIGLENVV----LLPHVASATVETRKAMA  296 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~-vd~~aL~~-al~~g~i~ga~lDV~~~EP~-~~~~L~~~pnvi----~tPH~a~~t~~~~~~~~  296 (317)
                      .||+|++++|+||+.. +|+++|.+ ++++++|. +.+|+++.++. .+-.++..+|++    +|||+++.+.+.   +.
T Consensus       350 ~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s---~~  425 (494)
T 3ce6_A          350 AMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNS---FA  425 (494)
T ss_dssp             HSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHH---HH
T ss_pred             hcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHH---HH
Confidence            9999999999999999 99999998 88888888 56898876431 122477788988    999999888765   47


Q ss_pred             HHHHHHHHHHHCCCCCCCCC
Q 042102          297 DLVVGNLQAHFGKKPLLTPV  316 (317)
Q Consensus       297 ~~~~~nl~~~~~g~~~~~~v  316 (317)
                      +.+.++++.|.+|+++.+.|
T Consensus       426 ~qa~~ai~~~~~g~~~~~~V  445 (494)
T 3ce6_A          426 NQTIAQIELWTKNDEYDNEV  445 (494)
T ss_dssp             HHHHHHHHHHHTGGGCCSSE
T ss_pred             HHHHHHHHHHHcCCCCCCEE
Confidence            78999999999988776543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.90  E-value=2.2e-23  Score=199.07  Aligned_cols=244  Identities=11%  Similarity=0.119  Sum_probs=178.0

Q ss_pred             CCChhHHHHHHh-cCeEEEecCCC-----ChHHHH----------hhccCCceEEEEeCCCCCCHHHHhcCCCceEEEEC
Q 042102           15 PVSNYLEQEIEK-SFKVFKLWHFE-----DKEQFI----------NTHKDSIQAVVGSAAAGADAELIESLPKLEIVATC   78 (317)
Q Consensus        15 ~~~~~~~~~l~~-~~~~~~~~~~~-----~~~~~~----------~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~   78 (317)
                      ++.|+..++|.+ .+++..-....     .++++.          .+.++++|+|+ ....++++++....++..++...
T Consensus        17 ~ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~-~vk~p~~~e~~~l~~~~~l~~~~   95 (377)
T 2vhw_A           17 AITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLL-KVKEPIAAEYGRLRHGQILFTFL   95 (377)
T ss_dssp             SCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEE-CSSCCCGGGGGGCCTTCEEEECC
T ss_pred             CcCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEE-EeCCCChHHHhhcCCCCEEEEEe
Confidence            467888888865 57765422110     123333          12334578764 45567778888878898888888


Q ss_pred             CCCCCcCChhhHhhCCcEEE----------eCCCCCcHHHHHHHHHHHHHHh-hchhHHHHHHHcCCCccCccccccccc
Q 042102           79 SVGLDKIDLARCKEKGIRVA----------NTPDVLTDDVADLAIGLILAVL-RRICESDRYVRSGEWKKGEFKMTTKFT  147 (317)
Q Consensus        79 ~~G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~al~~~L~~~-r~~~~~~~~~~~~~w~~~~~~~~~~l~  147 (317)
                      ..++|...++++.++||++.          |.|.+  .++||++..+++.+. |++.+    ...|+|.... . ..++.
T Consensus        96 ~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~ag~~a~~~a~r~l~~----~~~g~~~~~~-~-~~~l~  167 (377)
T 2vhw_A           96 HLAASRACTDALLDSGTTSIAYETVQTADGALPLL--APMSEVAGRLAAQVGAYHLMR----TQGGRGVLMG-G-VPGVE  167 (377)
T ss_dssp             CGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHHHHHHHHHHHHHHTSG----GGTSCCCCTT-C-BTTBC
T ss_pred             cccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHHHHHHHHHHHHHHHHH----hcCCCccccc-C-CCCCC
Confidence            88999999999999999998          55554  466799985554444 77632    3344432111 1 23689


Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcc------ccCCHHHhcccCCEEEEec--cCChhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYK------YYPNLIDLASNCQILVVAC--SLTEET  213 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~------~~~~l~el~~~aDvV~~~l--p~~~~t  213 (317)
                      |++|+|+|+|.||+.+++.++++|++|+++|+++...      .+..      ...+++++++++|+|+.++  |.+ ++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t  246 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KA  246 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CC
Confidence            9999999999999999999999999999999876431      1111      1235778889999999976  554 68


Q ss_pred             hccccHHHHhccCCCcEEEEeC--CCcccCHHHHHHHHHhCCceEEEeeCCCC-CCCC-CcccCCCCceE--EcccCCCc
Q 042102          214 QHIVNRQVINALGPKGVLINIG--RGLLVDEHELVSALLQGRLGGAGLDVFEH-EPDV-PEELIGLENVV--LLPHVASA  287 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~--rg~~vd~~aL~~al~~g~i~ga~lDV~~~-EP~~-~~~L~~~pnvi--~tPH~a~~  287 (317)
                      .++++++.++.||+|+++||+|  +|.                      ||+. ||.+ +.|+|..+|++  +|||+++.
T Consensus       247 ~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~  304 (377)
T 2vhw_A          247 PKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYCVANMPAS  304 (377)
T ss_dssp             CCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEECBTTGGGG
T ss_pred             cceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEecCCcchh
Confidence            8899999999999999999998  332                      6777 8864 45899999998  99999998


Q ss_pred             cHH
Q 042102          288 TVE  290 (317)
Q Consensus       288 t~~  290 (317)
                      +..
T Consensus       305 ~~~  307 (377)
T 2vhw_A          305 VPK  307 (377)
T ss_dssp             SHH
T ss_pred             hHH
Confidence            865

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.82  E-value=7.6e-22  Score=190.19  Aligned_cols=154  Identities=14%  Similarity=0.159  Sum_probs=123.4

Q ss_pred             ccc-ccCCeEEEEecChhHHHHHHHHhh-CCCEEEEeCCCCCCCCCccccCCHHHhcccCCE-EEEeccCChhhhccccH
Q 042102          143 TTK-FTGKSVGILGMGRIGTAIAKRAEA-FDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQI-LVVACSLTEETQHIVNR  219 (317)
Q Consensus       143 ~~~-l~g~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDv-V~~~lp~~~~t~~li~~  219 (317)
                      +.+ ++|+||||+|+|+||+.+|+++++ ||++|++++++...... ....+++++++.+|. .++ +|+ ++|++ |+.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~-~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~  281 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYN-PDGLNADEVLKWKNEHGSV-KDF-PGATN-ITN  281 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEE-EEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccC-ccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCH
Confidence            456 999999999999999999999999 99999988543321111 112257777665553 222 566 56788 799


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC--cccCCCCceEEcccC----C--------
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP--EELIGLENVVLLPHV----A--------  285 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~--~~L~~~pnvi~tPH~----a--------  285 (317)
                      +.|..||+ .++||++||.+||+++ +++|+++.|.+++     +||..+  ++||+.+||++|||+    |        
T Consensus       282 ~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E  354 (419)
T 1gtm_A          282 EELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFE  354 (419)
T ss_dssp             HHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHH
T ss_pred             HHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeeeh
Confidence            99999998 6999999999999999 6999999999886     899765  389999999999999    6        


Q ss_pred             ---------CccHHHHHHHHHHHHHHHHHHH
Q 042102          286 ---------SATVETRKAMADLVVGNLQAHF  307 (317)
Q Consensus       286 ---------~~t~~~~~~~~~~~~~nl~~~~  307 (317)
                               +.+.+...++.+.+.+++.+++
T Consensus       355 ~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~  385 (419)
T 1gtm_A          355 WVQNITGYYWTIEEVRERLDKKMTKAFYDVY  385 (419)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence                     5567788888888888888876

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.81  E-value=5e-20  Score=175.36  Aligned_cols=272  Identities=16%  Similarity=0.154  Sum_probs=173.6

Q ss_pred             CCChhHHHHHHh-cCeEEEecCCC-----ChHHHHh---------hccCCceEEEEeCCCCCCHHHHhcC-CCceEEEEC
Q 042102           15 PVSNYLEQEIEK-SFKVFKLWHFE-----DKEQFIN---------THKDSIQAVVGSAAAGADAELIESL-PKLEIVATC   78 (317)
Q Consensus        15 ~~~~~~~~~l~~-~~~~~~~~~~~-----~~~~~~~---------~~~~~~~~ii~~~~~~~~~~~l~~~-~~Lk~i~~~   78 (317)
                      ++.|+..++|.+ .+++..-....     .++++..         +.+ ++|+|+. ...+++++ ++.+ |+.++|+..
T Consensus        17 ~l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~-vk~p~~~~-~~~l~~~~~~~~~~   93 (369)
T 2eez_A           17 ALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVK-VKEPLPEE-YGFLREGLILFTYL   93 (369)
T ss_dssp             SSCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEEC-SSCCCGGG-GGGCCTTCEEEECC
T ss_pred             CcCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEE-ECCCCHHH-HhhcCCCcEEEEEe
Confidence            467888888865 57665422111     1334432         244 7898764 34455444 6665 789999999


Q ss_pred             CCCCCcCChhhHhhCCcEEE---eCCCC-Cc----HHHHHHHH--HHHHHHhhchhHHHHHHHcCCCccCcccccccccC
Q 042102           79 SVGLDKIDLARCKEKGIRVA---NTPDV-LT----DDVADLAI--GLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTG  148 (317)
Q Consensus        79 ~~G~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~al--~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g  148 (317)
                      ..+.|..+++++.++||.+.   +.+.. ..    .++++.+-  +.++ .++.+.....  ..+.|..   . ..++++
T Consensus        94 ~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~-a~~~l~~~~~--g~~~~~~---~-~~~l~~  166 (369)
T 2eez_A           94 HLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQV-GAQFLEKPKG--GRGVLLG---G-VPGVAP  166 (369)
T ss_dssp             CGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHH-HHHHTSGGGT--SCCCCTT---C-BTBBCC
T ss_pred             cccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHH-HHHHHHHhcC--CCceecC---C-CCCCCC
Confidence            99999999999999999998   44432 11    44555443  3332 2333322210  1122321   1 136899


Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcc------ccCCHHHhcccCCEEEEeccCCh-hhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYK------YYPNLIDLASNCQILVVACSLTE-ETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~------~~~~l~el~~~aDvV~~~lp~~~-~t~~  215 (317)
                      ++|+|+|.|.||+.+++.++++|++|+++|+++...      .+..      ...+++++++++|+|+.+++... .+..
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~  246 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPK  246 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------C
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccch
Confidence            999999999999999999999999999999875421      1111      12346778899999999998765 5778


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC-CcccCCCCceE---------EcccCC
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV-PEELIGLENVV---------LLPHVA  285 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~-~~~L~~~pnvi---------~tPH~a  285 (317)
                      ++.++.++.||+|+++||++-.             .|   |+ +|++  ||.. +.+++..+|+.         +|||+|
T Consensus       247 li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~a  307 (369)
T 2eez_A          247 LVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTS  307 (369)
T ss_dssp             CSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGGSHHHH
T ss_pred             hHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHH
Confidence            8899999999999999999821             12   44 8988  5543 45788889999         889988


Q ss_pred             Cc--cHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102          286 SA--TVETRKAMADLVVGNLQAHFGKKPLLTP  315 (317)
Q Consensus       286 ~~--t~~~~~~~~~~~~~nl~~~~~g~~~~~~  315 (317)
                      +.  +.+....+.+++.+++..++.++.+.+.
T Consensus       308 s~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~  339 (369)
T 2eez_A          308 TFALTNQTLPYVLKLAEKGLDALLEDAALLKG  339 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHSCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcChhhhhcChHHhcC
Confidence            74  5667788888888888777777655443

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.77  E-value=9.2e-19  Score=168.33  Aligned_cols=219  Identities=15%  Similarity=0.200  Sum_probs=147.2

Q ss_pred             CCChhHHHHHHh-cCeEEEecCCCC-----hHHHHhh---------ccCCceEEEEeCCCCCCHHHHhcC-CCceEEEEC
Q 042102           15 PVSNYLEQEIEK-SFKVFKLWHFED-----KEQFINT---------HKDSIQAVVGSAAAGADAELIESL-PKLEIVATC   78 (317)
Q Consensus        15 ~~~~~~~~~l~~-~~~~~~~~~~~~-----~~~~~~~---------~~~~~~~ii~~~~~~~~~~~l~~~-~~Lk~i~~~   78 (317)
                      ++.|+..++|.+ .++|........     ++++.+.         ..+ +|+|+.. .. .+++.++.+ |++++|+..
T Consensus        24 ~ltP~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~-adiil~v-k~-p~~~~i~~l~~~~~li~~~  100 (401)
T 1x13_A           24 AATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQ-SEIILKV-NA-PLDDEIALLNPGTTLVSFI  100 (401)
T ss_dssp             SCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGS-SSEEECS-SC-CCHHHHTTCCTTCEEEECC
T ss_pred             CCCHHHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhc-CCeEEEe-CC-CCHHHHHHhcCCCcEEEEe
Confidence            357788788755 566654321111     2333311         223 7887753 33 357778886 789999999


Q ss_pred             CCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHH--HHHHHcCCCccCccc-----ccccccCCeE
Q 042102           79 SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES--DRYVRSGEWKKGEFK-----MTTKFTGKSV  151 (317)
Q Consensus        79 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~--~~~~~~~~w~~~~~~-----~~~~l~g~~v  151 (317)
                      +.|+|++|++++.++||++.+     .++|+|++.++.|.+++.+...  +..++.+.|....+.     ...++.|++|
T Consensus       101 ~~~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V  175 (401)
T 1x13_A          101 WPAQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKV  175 (401)
T ss_dssp             CGGGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTEEECCCEE
T ss_pred             cCCCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeeccCcCCCEE
Confidence            999999999999999999975     3444554444432222222221  122222222111010     0115889999


Q ss_pred             EEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccC---------------------------CHHHhccc
Q 042102          152 GILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYP---------------------------NLIDLASN  199 (317)
Q Consensus       152 gIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~---------------------------~l~el~~~  199 (317)
                      +|+|+|.||..+++.++++|++|+++|+++...     .+.....                           ++.+++++
T Consensus       176 ~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~  255 (401)
T 1x13_A          176 MVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKE  255 (401)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999876531     1222111                           36788889


Q ss_pred             CCEEEEe--ccCChhhhccccHHHHhccCCCcEEEEeC--CCcccCH
Q 042102          200 CQILVVA--CSLTEETQHIVNRQVINALGPKGVLINIG--RGLLVDE  242 (317)
Q Consensus       200 aDvV~~~--lp~~~~t~~li~~~~l~~mk~gavlVN~~--rg~~vd~  242 (317)
                      +|+|+.+  +|.. .+.++++++.++.||+|+++||+|  ||+.+++
T Consensus       256 aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          256 VDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             CSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             CCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            9999999  5543 356789999999999999999999  8887765

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.72  E-value=1.4e-17  Score=160.05  Aligned_cols=153  Identities=16%  Similarity=0.185  Sum_probs=115.1

Q ss_pred             EECCCCCCcCC-hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEE
Q 042102           76 ATCSVGLDKID-LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGIL  154 (317)
Q Consensus        76 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIi  154 (317)
                      =-+++|+..+. ..+..+.+|+|.|++.....+..+...+..-++...+.    .           ..+.++.|++|||+
T Consensus       153 EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~----r-----------atg~~L~GktVgIi  217 (436)
T 3h9u_A          153 EETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIK----R-----------ATDVMIAGKTACVC  217 (436)
T ss_dssp             ECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH----H-----------HHCCCCTTCEEEEE
T ss_pred             eccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHH----H-----------hcCCcccCCEEEEE
Confidence            34567776552 34556789999999876555544433332222222221    1           02457999999999


Q ss_pred             ecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102          155 GMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG  229 (317)
Q Consensus       155 G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  229 (317)
                      |+|.||+.+|++|++||++|+++++++...     .++ ...++++++++||+|++    ++.|.++|+++.|+.||+|+
T Consensus       218 G~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~-~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~gA  292 (436)
T 3h9u_A          218 GYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGY-QVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRDDA  292 (436)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCTTE
T ss_pred             eeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCC-eecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCCCc
Confidence            999999999999999999999999876432     222 24589999999999996    34578999999999999999


Q ss_pred             EEEEeCCCcc-cCHHHHHHH
Q 042102          230 VLINIGRGLL-VDEHELVSA  248 (317)
Q Consensus       230 vlVN~~rg~~-vd~~aL~~a  248 (317)
                      ++||+|||.+ ||.++|.+.
T Consensus       293 IVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          293 IVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             EEEECSSSGGGBCHHHHHHH
T ss_pred             EEEEeCCCCCccCHHHHHhh
Confidence            9999999997 899988764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.70  E-value=1.1e-16  Score=152.99  Aligned_cols=221  Identities=10%  Similarity=0.149  Sum_probs=145.5

Q ss_pred             CCChhHHHHHHh-cCeEEEecCCC-----ChHHHH----------hhccCCceEEEEeCCCCC----CHHHHhcCC-Cce
Q 042102           15 PVSNYLEQEIEK-SFKVFKLWHFE-----DKEQFI----------NTHKDSIQAVVGSAAAGA----DAELIESLP-KLE   73 (317)
Q Consensus        15 ~~~~~~~~~l~~-~~~~~~~~~~~-----~~~~~~----------~~~~~~~~~ii~~~~~~~----~~~~l~~~~-~Lk   73 (317)
                      ++.|+..++|.+ .+++..-....     .++++.          .+.+.++|+|+.. ..++    +++.++.++ .++
T Consensus        17 ~l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~~   95 (384)
T 1l7d_A           17 AISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKV-QRPMTAEEGTDEVALIKEGAV   95 (384)
T ss_dssp             SCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTCE
T ss_pred             CCCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEe-cCcccccCCHHHHHhhccCCE
Confidence            467888888866 46665422111     123333          2445778988764 3455    788889886 699


Q ss_pred             EEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc---ccc-c-ccccC
Q 042102           74 IVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE---FKM-T-TKFTG  148 (317)
Q Consensus        74 ~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~---~~~-~-~~l~g  148 (317)
                      +|+....+.|+.+++++.++||.+++.. ...+.+++..+. +|+..+.+. .+..+..+.|....   ..+ + .++.|
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~gi~~~~~e-~~~~~~~~~~l~-~l~~~a~~a-g~~av~~~~~~~~~~~~~~~~~~~~l~g  172 (384)
T 1l7d_A           96 LMCHLGALTNRPVVEALTKRKITAYAME-LMPRISRAQSMD-ILSSQSNLA-GYRAVIDGAYEFARAFPMMMTAAGTVPP  172 (384)
T ss_dssp             EEEECCGGGCHHHHHHHHHTTCEEEEGG-GCCCSGGGGGGC-HHHHHHHHH-HHHHHHHHHHHCSSCSSCEEETTEEECC
T ss_pred             EEEEecccCCHHHHHHHHHCCCEEEEec-cccccccccccc-hhhHHHHHH-HHHHHHHHHHHhhhcccchhccCCCCCC
Confidence            9999999999999999999999999842 122211222222 222222221 11222222221000   001 1 36899


Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcccc---C----------------C----------HH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYY---P----------------N----------LI  194 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~---~----------------~----------l~  194 (317)
                      ++|+|+|+|.||+.+++.++++|++|.++|+++...     .+....   .                +          +.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~  252 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL  252 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHH
Confidence            999999999999999999999999999999876531     122111   0                1          67


Q ss_pred             HhcccCCEEEEec--cCChhhhccccHHHHhccCCCcEEEEeC--CCccc
Q 042102          195 DLASNCQILVVAC--SLTEETQHIVNRQVINALGPKGVLINIG--RGLLV  240 (317)
Q Consensus       195 el~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~gavlVN~~--rg~~v  240 (317)
                      ++++++|+|+.+.  |..+ +.++++++.++.||+|+++||++  ||..+
T Consensus       253 ~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          253 KELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             HHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence            8889999999877  4433 45688999999999999999999  76644

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.67  E-value=9.4e-17  Score=154.15  Aligned_cols=152  Identities=14%  Similarity=0.147  Sum_probs=110.9

Q ss_pred             EECCCCCCcCC-hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEE
Q 042102           76 ATCSVGLDKID-LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGIL  154 (317)
Q Consensus        76 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIi  154 (317)
                      =-+++|+-.+- ....-...+++.|+...    +..+-+-....+.+.+.....+           ..+.++.|+||||+
T Consensus       189 EeTtTGv~rL~~m~~~g~L~~PvinVnds----~tK~~fDn~yG~~eslvdgI~R-----------atg~~L~GKTVgVI  253 (464)
T 3n58_A          189 EETTTGVNRLYQLQKKGLLPFPAINVNDS----VTKSKFDNKYGCKESLVDGIRR-----------GTDVMMAGKVAVVC  253 (464)
T ss_dssp             ECSHHHHHHHHHHHHHTCCCSCEEECTTS----HHHHTTHHHHHHHHHHHHHHHH-----------HHCCCCTTCEEEEE
T ss_pred             eccccchHHHHHHHHcCCCCCCEEeeccH----hhhhhhhhhhcchHHHHHHHHH-----------hcCCcccCCEEEEE
Confidence            34566766542 22334567899998654    4444333333333333222211           12457999999999


Q ss_pred             ecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102          155 GMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG  229 (317)
Q Consensus       155 G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  229 (317)
                      |+|.||+.+|+++++||++|+++++++...     .++ ...++++++++||+|+++.    .|+++|+++.|+.||+|+
T Consensus       254 G~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~-~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GA  328 (464)
T 3n58_A          254 GYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGF-EVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMC  328 (464)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTC-EECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTE
T ss_pred             CcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCc-eeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCe
Confidence            999999999999999999999998765321     222 2458999999999999864    378999999999999999


Q ss_pred             EEEEeCCCcc-cCHHHHHH
Q 042102          230 VLINIGRGLL-VDEHELVS  247 (317)
Q Consensus       230 vlVN~~rg~~-vd~~aL~~  247 (317)
                      ++||+|||.+ +|.++|.+
T Consensus       329 ILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          329 IVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             EEEECSSSTTTBTCGGGTT
T ss_pred             EEEEcCCCCcccCHHHHHh
Confidence            9999999998 99988874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.65  E-value=8.1e-18  Score=161.92  Aligned_cols=207  Identities=16%  Similarity=0.263  Sum_probs=156.1

Q ss_pred             CCceEEEECCCCCCcCChhhHh-----hCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc--ccc
Q 042102           70 PKLEIVATCSVGLDKIDLARCK-----EKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE--FKM  142 (317)
Q Consensus        70 ~~Lk~i~~~~~G~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~--~~~  142 (317)
                      +.+++|...++|+|++++.++.     ++++.+++.+|. ..+++++.+..++.+.|++..... ...+.|....  ...
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~-~~~~~~s~a~~av~~  157 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETR-ISEGAVSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSS-TTCSCCSHHHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhh-hcCCCccHHHHHHHH
Confidence            4678899999999999998887     889999998887 568999999999999999866532 2234453110  011


Q ss_pred             c----ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC------CCcc--ccCCHHHhcccCCEEEEeccC
Q 042102          143 T----TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN------LNYK--YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       143 ~----~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~------~~~~--~~~~l~el~~~aDvV~~~lp~  209 (317)
                      .    .++.|++|+|+|+|.||+.+++.++.+|+ +|++++|+..+.      .+..  ...++.+++.++|+|+.|+|.
T Consensus       158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~  237 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA  237 (404)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence            1    14789999999999999999999999999 999999976432      1221  124677888999999999874


Q ss_pred             ChhhhccccHHHHhc--cC----CCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC-CCcccCCCCceEE--
Q 042102          210 TEETQHIVNRQVINA--LG----PKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPD-VPEELIGLENVVL--  280 (317)
Q Consensus       210 ~~~t~~li~~~~l~~--mk----~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~-~~~~L~~~pnvi~--  280 (317)
                      +   ..+++++.++.  ||    ++.++||++                             +|. ..++++++|||++  
T Consensus       238 ~---~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d  285 (404)
T 1gpj_A          238 P---HPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRT  285 (404)
T ss_dssp             S---SCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEE
T ss_pred             C---CceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEe
Confidence            4   45677777876  42    456667765                             354 3458999999999  


Q ss_pred             cccCCCccHHHHH----------HHHHHHHHHHHHHHCCC
Q 042102          281 LPHVASATVETRK----------AMADLVVGNLQAHFGKK  310 (317)
Q Consensus       281 tPH~a~~t~~~~~----------~~~~~~~~nl~~~~~g~  310 (317)
                      +||+++.+.++.+          .+.+..++++..|+++.
T Consensus       286 ~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~  325 (404)
T 1gpj_A          286 IDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKL  325 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998887654          56667777888887654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.61  E-value=1.3e-15  Score=146.07  Aligned_cols=151  Identities=16%  Similarity=0.250  Sum_probs=108.5

Q ss_pred             EECCCCCCcC-ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEE
Q 042102           76 ATCSVGLDKI-DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGIL  154 (317)
Q Consensus        76 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIi  154 (317)
                      =-+++|+-.+ .....-+..++|.|+.+....+--+-.-+.--++...+.    +           ..+..+.|++|+|+
T Consensus       162 EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~----r-----------at~~~L~GktV~Vi  226 (435)
T 3gvp_A          162 EESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLK----R-----------TTDMMFGGKQVVVC  226 (435)
T ss_dssp             ECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHHHHHH----H-----------HHCCCCTTCEEEEE
T ss_pred             eccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHHHHHH----H-----------hhCceecCCEEEEE
Confidence            3456676554 223334568999999876555544422221111111111    0           02456999999999


Q ss_pred             ecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102          155 GMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG  229 (317)
Q Consensus       155 G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  229 (317)
                      |+|.||+.+|++|++||++|+++++++...     .++ ...++++++++||+|+++    +.|.++|+++.|+.||+|+
T Consensus       227 G~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~-~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~ga  301 (435)
T 3gvp_A          227 GYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF-RLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSC  301 (435)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTE
T ss_pred             eeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC-EeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCc
Confidence            999999999999999999999999875321     222 246899999999999995    4578899999999999999


Q ss_pred             EEEEeCCCcc-cCHHHHH
Q 042102          230 VLINIGRGLL-VDEHELV  246 (317)
Q Consensus       230 vlVN~~rg~~-vd~~aL~  246 (317)
                      ++||+|||.. +|.++|.
T Consensus       302 ilINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          302 IVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             EEEECSSTTTTBTGGGGC
T ss_pred             EEEEecCCCccCCHHHHH
Confidence            9999999998 7877664

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.42  E-value=4.7e-13  Score=123.56  Aligned_cols=111  Identities=16%  Similarity=0.159  Sum_probs=94.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      ++|||||+|.||..||++|...|++|.+|||++.+..     +.....++.|+++.||+|++++|..+.++.++....+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            4799999999999999999999999999999876532     34456789999999999999999988888888888999


Q ss_pred             ccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      .+++|.++||++...+-..+.+.+.+.+..+.  .+|.
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda  121 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA  121 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence            99999999999999999999999999999887  6674

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.42  E-value=1.8e-13  Score=126.52  Aligned_cols=111  Identities=10%  Similarity=0.179  Sum_probs=97.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~  221 (317)
                      ++|||||+|.||..||++|...|++|.+|||++.+.     .+.....++.|+++.||+|++|+|..++++.++.  ...
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            589999999999999999999999999999987543     3456678999999999999999999999888763  346


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      ++.+++|.++||++...+-+...+.+.+++..+.  .+|.
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            7889999999999999999999999999999887  6774

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.34  E-value=1e-12  Score=121.56  Aligned_cols=116  Identities=9%  Similarity=0.028  Sum_probs=97.1

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      .+...++|||||+|.||+.+|+.|...|++|.+||+++...     .+.....++.+++++||+|++++|....++.++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            34567899999999999999999999999999999986532     2344567899999999999999998877888775


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      ++.+..+++|.++||+++....+.+.+.+.+.+..+.  .+|.
T Consensus        85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vda  125 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVKG  125 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEEE
T ss_pred             ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence            4346678899999999999999999999999887765  4563

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.33  E-value=8.7e-11  Score=111.40  Aligned_cols=227  Identities=10%  Similarity=0.086  Sum_probs=136.3

Q ss_pred             CCCCCCcEEEEeC---------CCChhHHHHHHh-cCeEEEecCCCC-----hHHHHh------hccCCceEEEEeCCCC
Q 042102            2 DNNSNNIIVLMVC---------PVSNYLEQEIEK-SFKVFKLWHFED-----KEQFIN------THKDSIQAVVGSAAAG   60 (317)
Q Consensus         2 ~~~~~~~~vl~~~---------~~~~~~~~~l~~-~~~~~~~~~~~~-----~~~~~~------~~~~~~~~ii~~~~~~   60 (317)
                      |.+..+|+|-|..         ++.|+..++|.+ .+++..-.....     ++++.+      +.+. +|+|+.-  ..
T Consensus        17 ~~~~~~m~IgvpkE~~~~E~RValtP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~-adiIlkV--k~   93 (381)
T 3p2y_A           17 QGPGSMTLIGVPRESAEGERRVALVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWP-ADVVVKV--NP   93 (381)
T ss_dssp             ---CTTCEEEECCCCSTTCCCCSSCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTT-SSEEECS--SC
T ss_pred             cCCCcceEEEEEecCCCCCceecCCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeec-CCEEEEe--CC
Confidence            3456678888875         356888888755 566654322211     344432      1123 6766532  23


Q ss_pred             CCHHHHhcCC-CceEEEECCCCCCcCChhhHhhCCcEEEe---CCCCC-c------HHHHHHHHHHHHHHhhchhHHHHH
Q 042102           61 ADAELIESLP-KLEIVATCSVGLDKIDLARCKEKGIRVAN---TPDVL-T------DDVADLAIGLILAVLRRICESDRY  129 (317)
Q Consensus        61 ~~~~~l~~~~-~Lk~i~~~~~G~d~id~~~~~~~gI~v~n---~~~~~-~------~~vAE~al~~~L~~~r~~~~~~~~  129 (317)
                      .+++.++.++ +-.+|+....-.|.=-++++.++||+..-   .+... +      .+++|.+=      .+-+......
T Consensus        94 p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAG------y~Av~~aa~~  167 (381)
T 3p2y_A           94 PTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAG------YKAVLLGASL  167 (381)
T ss_dssp             CCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHH------HHHHHHHHHH
T ss_pred             CChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHH------HHHHHHHHHH
Confidence            4556666664 55566655555554445788899999865   22211 1      22333221      1111111111


Q ss_pred             HHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc---------------
Q 042102          130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY---------------  189 (317)
Q Consensus       130 ~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~---------------  189 (317)
                      .  +.....-..-...+.+++|+|+|+|.||..+++.++++|++|.++|+++...     .+..+               
T Consensus       168 l--~~~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~  245 (381)
T 3p2y_A          168 S--TRFVPMLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYAR  245 (381)
T ss_dssp             C--SSCSSCEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-----------
T ss_pred             h--hhhhhhhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchh
Confidence            1  1110000001235789999999999999999999999999999999986531     11111               


Q ss_pred             ----------cCCHHHhcccCCEEEEec--cCChhhhccccHHHHhccCCCcEEEEeC--CCccc
Q 042102          190 ----------YPNLIDLASNCQILVVAC--SLTEETQHIVNRQVINALGPKGVLINIG--RGLLV  240 (317)
Q Consensus       190 ----------~~~l~el~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~gavlVN~~--rg~~v  240 (317)
                                ..++.++++++|+|+.++  |..+ +..+++++.++.||||+++||++  +|..+
T Consensus       246 ~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~-ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          246 ELSEAERAQQQQALEDAITKFDIVITTALVPGRP-APRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSC-CCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             hhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCcc-cceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence                      124678999999999875  5433 56789999999999999999997  45443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.33  E-value=1.1e-11  Score=115.10  Aligned_cols=162  Identities=16%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             HHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CCc--cccCCHHH-hccc
Q 042102          130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LNY--KYYPNLID-LASN  199 (317)
Q Consensus       130 ~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~~--~~~~~l~e-l~~~  199 (317)
                      +..+.|.....+...++..++|||||+|.||+.+|+.|+..|+  +|.+||+++...     .+.  ....++++ ++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~   94 (314)
T 3ggo_A           15 VPRGSHMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS   94 (314)
T ss_dssp             --------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGC
T ss_pred             cccccCcCcCCchhhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhcc
Confidence            3445564333333334556899999999999999999999999  999999976432     122  23457788 8999


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCC---CCCC-cccCCC
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHE---PDVP-EELIGL  275 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~E---P~~~-~~L~~~  275 (317)
                      ||+|++++|... +..++ ++....+++++++++++.......+++.+.+.. ++.+. -=++..|   |... ..|+.-
T Consensus        95 aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g  170 (314)
T 3ggo_A           95 PDFVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEG  170 (314)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTT
T ss_pred             CCEEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcC
Confidence            999999999764 34444 566777999999999987765445566666644 22211 1233333   1111 258888


Q ss_pred             CceEEcccCCCccHHHHHHHH
Q 042102          276 ENVVLLPHVASATVETRKAMA  296 (317)
Q Consensus       276 pnvi~tPH~a~~t~~~~~~~~  296 (317)
                      ..+++||+-+ .+.+..+++.
T Consensus       171 ~~~il~~~~~-~~~~~~~~v~  190 (314)
T 3ggo_A          171 KKVILTPTKK-TDKKRLKLVK  190 (314)
T ss_dssp             CEEEECCCTT-SCHHHHHHHH
T ss_pred             CEEEEEeCCC-CCHHHHHHHH
Confidence            8999999843 4555444443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.32  E-value=4e-12  Score=117.76  Aligned_cols=116  Identities=13%  Similarity=0.080  Sum_probs=95.3

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      .+....++|||||+|.||+.+|+.|...|++|.+||+++...     .+.....++.+++++||+|++++|....++.++
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~   95 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV   95 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence            344566899999999999999999999999999999987543     234456789999999999999999877777665


Q ss_pred             --cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102          218 --NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD  260 (317)
Q Consensus       218 --~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD  260 (317)
                        .++.++.+++|.++||+++..+...+.+.+.+.+..+.  .+|
T Consensus        96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~v~  138 (310)
T 3doj_A           96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR--FVE  138 (310)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence              24566789999999999999988888999988887665  455

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.31  E-value=2.9e-12  Score=119.24  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=95.8

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ....++|||||+|.||+.+|+.|...|++|.+||+++...     .+.....++++++++||+|++++|....++.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            3456799999999999999999999999999999986532     23445678999999999999999987777776643


Q ss_pred             -HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          220 -QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       220 -~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                       ..++.+++|.++||++++.+...+.+.+.+.+..+.  .+|.
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~~  148 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA--HLDT  148 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE--EEeC
Confidence             567789999999999999999999999999887765  4553

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.30  E-value=6.4e-12  Score=116.55  Aligned_cols=135  Identities=10%  Similarity=0.093  Sum_probs=91.7

Q ss_pred             HHHHcCCCc-cCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCC--CC-----CCCccccCCHHHhcc
Q 042102          128 RYVRSGEWK-KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTE--KP-----NLNYKYYPNLIDLAS  198 (317)
Q Consensus       128 ~~~~~~~w~-~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~--~~-----~~~~~~~~~l~el~~  198 (317)
                      ++.+.+.|. +.+++.......++|||||+|.||+.+|+.|...|+ +|.+||+++  ..     ..+.....++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~   82 (312)
T 3qsg_A            3 HHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAG   82 (312)
T ss_dssp             ----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHH
T ss_pred             cccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHh
Confidence            456677776 233333334456799999999999999999999999 999999963  21     124445678999999


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC--CceEEEee--CCCCCC
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG--RLGGAGLD--VFEHEP  266 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g--~i~ga~lD--V~~~EP  266 (317)
                      +||+|++++|...... .+ ++..+.+++|.++||+++........+.+.+.+.  .+.  .+|  |+.++|
T Consensus        83 ~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~--~vd~pv~g~~~  150 (312)
T 3qsg_A           83 ECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ--YAAVAVMSAVK  150 (312)
T ss_dssp             HCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCE--EEEEEECSCST
T ss_pred             cCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCe--EEeccccCCch
Confidence            9999999999877655 23 5677889999999999999988888999888876  443  455  444333

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.28  E-value=6.8e-12  Score=115.44  Aligned_cols=109  Identities=14%  Similarity=0.171  Sum_probs=93.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .++|||||+|.||+.+|+.|...|++|.+||+++...     .+.....+++++++ ||+|++++|....++.++ ++.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            3689999999999999999999999999999987653     23445678999999 999999999887777777 6778


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD  260 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD  260 (317)
                      +.+++|.++||+++......+.+.+.+.+..+.  .+|
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~  128 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH--IVD  128 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE--EEE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence            889999999999999998888999999877665  445

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.25  E-value=1.3e-11  Score=112.78  Aligned_cols=110  Identities=14%  Similarity=0.240  Sum_probs=93.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~  221 (317)
                      ++|||||+|.||+.+|+.|...|++|.+||+++...     .+.....++++++++||+|++++|....++.++.  ++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999987543     2344567899999999999999998777777662  456


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD  260 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD  260 (317)
                      ++.+++|.++||+++....+.+.+.+.+.+..+.  .+|
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~  118 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR--FLE  118 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE--EEE
Confidence            7789999999999999988889999999887665  445

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.25  E-value=1.1e-11  Score=117.20  Aligned_cols=116  Identities=9%  Similarity=0.175  Sum_probs=96.0

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccC---CEEEEeccCChhhhccc
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNC---QILVVACSLTEETQHIV  217 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~a---DvV~~~lp~~~~t~~li  217 (317)
                      +.+++|||||+|.||+.+|+.|...|++|.+||+++...     .+.....+++++++.+   |+|++++|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            567899999999999999999999999999999986432     2344567899999999   9999999987 777776


Q ss_pred             cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 042102          218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFE  263 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~  263 (317)
                       ...+..+++|.++||++++...+...+.+.+.+..+......|+.
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence             567788999999999999999999999999998888744333443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.22  E-value=1.3e-11  Score=112.91  Aligned_cols=110  Identities=14%  Similarity=0.158  Sum_probs=92.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~  221 (317)
                      ++|||||+|.||+.+|+.|...|++|.+||+++...     .+.....++++++++||+|++++|....++.++.  +..
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            479999999999999999999999999999987643     1334567899999999999999998777776652  456


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD  260 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD  260 (317)
                      ++.+++|.++||++++.....+.+.+.+.+..+.  .+|
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~~~  118 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR--FLE  118 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEE
Confidence            6789999999999999998888999988887665  445

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.22  E-value=6e-11  Score=107.84  Aligned_cols=141  Identities=16%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CCcc--ccCCHHHhcc-cCCEEEEeccCChhhhcccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LNYK--YYPNLIDLAS-NCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~~~--~~~~l~el~~-~aDvV~~~lp~~~~t~~li~  218 (317)
                      ++|||||+|.||+.+++.|+..|+  +|.++++++...     .+..  ...+++++++ +||+|++++|.. .+..++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence            489999999999999999999998  999999875421     1221  2356888899 999999999965 3445553


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC---CCC-cccCCCCceEEcccCCCccHHHHHH
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP---DVP-EELIGLENVVLLPHVASATVETRKA  294 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP---~~~-~~L~~~pnvi~tPH~a~~t~~~~~~  294 (317)
                       +..+.+++++++++++++.....+.+.+.+.++-+.  ..-++..|.   ... .+++..++++++||.++. .+..+.
T Consensus        81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~~~~  156 (281)
T 2g5c_A           81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKRLKL  156 (281)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHHHHH
T ss_pred             -HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHHHHH
Confidence             456678999999999988866667788877664221  112333332   212 257788889999997654 343333

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.22  E-value=1.4e-10  Score=110.77  Aligned_cols=223  Identities=13%  Similarity=0.194  Sum_probs=134.2

Q ss_pred             CCcEEEEeC---------CCChhHHHHHHh-cCeEEEecCCCC-----hHHHHh--------hccCCceEEEEeCCCCCC
Q 042102            6 NNIIVLMVC---------PVSNYLEQEIEK-SFKVFKLWHFED-----KEQFIN--------THKDSIQAVVGSAAAGAD   62 (317)
Q Consensus         6 ~~~~vl~~~---------~~~~~~~~~l~~-~~~~~~~~~~~~-----~~~~~~--------~~~~~~~~ii~~~~~~~~   62 (317)
                      +.|+|=|..         ++.|+..++|.+ .++|..-.....     ++++.+        +.+.++|+|+.-. . .+
T Consensus        24 ~~m~IGvpkE~~~~E~RValtP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkVk-~-p~  101 (405)
T 4dio_A           24 VSEIVFIAKESDPNEGRVAGSVESVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKVR-R-PS  101 (405)
T ss_dssp             --CEEEECCCCCTTCCCCSCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEEE-C-CC
T ss_pred             cceEEEEecCCCCCCceecCCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEeC-C-CC
Confidence            457777765         367888787754 577654332211     333322        1133567766422 2 23


Q ss_pred             HHHHhcC-CCceEEEECCCCCCcCChhhHhhCCcEEEe---CCCCC-c------HHHHHHHHHHHHHHhhchhHHHHHHH
Q 042102           63 AELIESL-PKLEIVATCSVGLDKIDLARCKEKGIRVAN---TPDVL-T------DDVADLAIGLILAVLRRICESDRYVR  131 (317)
Q Consensus        63 ~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n---~~~~~-~------~~vAE~al~~~L~~~r~~~~~~~~~~  131 (317)
                      ++.++.+ ++-.+|+..-..-|.=-++++.++||+..-   .+... +      .+++|.+=      .+-+....... 
T Consensus       102 ~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAG------y~Av~~aa~~l-  174 (405)
T 4dio_A          102 AQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAG------YQAVIDAAYEY-  174 (405)
T ss_dssp             TTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHH------HHHHHHHHHHC-
T ss_pred             hhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHH------HHHHHHHHHHh-
Confidence            3444555 456666666555554445788899999865   33211 1      12333221      11111111111 


Q ss_pred             cCCCccCcccc--cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----------------
Q 042102          132 SGEWKKGEFKM--TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----------------  188 (317)
Q Consensus       132 ~~~w~~~~~~~--~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----------------  188 (317)
                      ...+.   ..+  ...+.+.+|+|+|+|.||..+++.++++|++|.++|+++...     .+..                
T Consensus       175 ~~~~~---~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~  251 (405)
T 4dio_A          175 DRALP---MMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAG  251 (405)
T ss_dssp             SSCSS---CEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC----------
T ss_pred             Hhhhc---hhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeeccccccccccccc
Confidence            00111   011  135789999999999999999999999999999999886531     1111                


Q ss_pred             -c------------cCCHHHhcccCCEEEEec--cCChhhhccccHHHHhccCCCcEEEEeC--CCcccC
Q 042102          189 -Y------------YPNLIDLASNCQILVVAC--SLTEETQHIVNRQVINALGPKGVLINIG--RGLLVD  241 (317)
Q Consensus       189 -~------------~~~l~el~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~gavlVN~~--rg~~vd  241 (317)
                       +            ..++.+++++||+|+.++  |..+ ...+++++.++.||||+++||++  +|..++
T Consensus       252 ~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~-ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e  320 (405)
T 4dio_A          252 GYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRP-APRLVTREMLDSMKPGSVVVDLAVERGGNIE  320 (405)
T ss_dssp             -------CHHHHHHHHHHHHHHHTCSEEEECCCCSSSC-CCCCBCHHHHTTSCTTCEEEETTGGGTCSBT
T ss_pred             chhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCC-CCEEecHHHHhcCCCCCEEEEEeCCCCCCcc
Confidence             0            125778899999999874  5433 56789999999999999999998  666554

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.20  E-value=1.5e-11  Score=113.39  Aligned_cols=111  Identities=17%  Similarity=0.151  Sum_probs=91.7

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-cCCHHHhcccCCEEEEeccCChhhhcccc--H
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-YPNLIDLASNCQILVVACSLTEETQHIVN--R  219 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-~~~l~el~~~aDvV~~~lp~~~~t~~li~--~  219 (317)
                      .++|||||+|.||+.+|+.|...|++|.+||+++...     .+... ..+++++++.||+|++++|....++.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            4689999999999999999999999999999986432     23333 56889999999999999998777776652  4


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD  260 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD  260 (317)
                      +.++.+++|.++||+++......+.+.+.+.+..+.  .+|
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~  125 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN--MLD  125 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence            566789999999999999988888999988886665  455

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.20  E-value=1e-10  Score=106.93  Aligned_cols=136  Identities=12%  Similarity=0.112  Sum_probs=99.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------------------C------------ccccCCHHHhcc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------------------N------------YKYYPNLIDLAS  198 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------~------------~~~~~~l~el~~  198 (317)
                      ++|+|||+|.||+.+|+.+...|++|.++|++++...                  .            .....+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            6899999999999999999999999999998764310                  0            123467888999


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCce
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENV  278 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnv  278 (317)
                      +||+|+.++|.+.+....+-++..+.+++++++++.+.+  +..+.+.+.+... -...++..+       .|.+..+.+
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~-------~p~~~~~lv  154 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFA-------NHVWVNNTA  154 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEEC-------SSTTTSCEE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccC-------CCcccCceE
Confidence            999999999998776666666777889999999965544  3566777777432 233455544       245677888


Q ss_pred             EEcccCCCccHHHHHHH
Q 042102          279 VLLPHVASATVETRKAM  295 (317)
Q Consensus       279 i~tPH~a~~t~~~~~~~  295 (317)
                      .++||- ..+.+..++.
T Consensus       155 evv~~~-~t~~~~~~~~  170 (283)
T 4e12_A          155 EVMGTT-KTDPEVYQQV  170 (283)
T ss_dssp             EEEECT-TSCHHHHHHH
T ss_pred             EEEeCC-CCCHHHHHHH
Confidence            999983 3344444443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.19  E-value=3.7e-11  Score=113.13  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=86.6

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcc-cCCEEEEeccCChhhhcccc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLAS-NCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~-~aDvV~~~lp~~~~t~~li~  218 (317)
                      ++.|+||+|+|+|+||+.+|++++.+|++|+++|++....     .+.. ..+.++++. +||+++.|     ++.++|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~-~v~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCE-EeChHHhhcCccceecHh-----HHHhhcC
Confidence            6899999999999999999999999999999998764321     1222 336778887 89998753     5788999


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++.++.|| ..+++|.+++.++++++ .++|+++.+.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 78999999999999888 5899999886

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.17  E-value=5.4e-11  Score=110.62  Aligned_cols=104  Identities=11%  Similarity=0.091  Sum_probs=87.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCC-------C-----CCccccC-CHHHhcccCCEEEEeccCChhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKP-------N-----LNYKYYP-NLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~-------~-----~~~~~~~-~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      .++|||||+|.||..+|+.|...| ++|.+||+++..       .     .+.  .. ++.+++++||+|++++|.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~  101 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK  101 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence            368999999999999999999999 999999987621       0     122  45 7889999999999999987766


Q ss_pred             hccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          214 QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ..+  ++..+.+++|.++||+++......+.+.+.+++..+.
T Consensus       102 ~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~  141 (317)
T 4ezb_A          102 AVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS  141 (317)
T ss_dssp             HHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCE
T ss_pred             HHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            543  6677889999999999999988899999999887665

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.15  E-value=1e-10  Score=107.70  Aligned_cols=136  Identities=15%  Similarity=0.104  Sum_probs=89.5

Q ss_pred             HHHHHHHcCCCccCcccccccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEE
Q 042102          125 ESDRYVRSGEWKKGEFKMTTKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQIL  203 (317)
Q Consensus       125 ~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV  203 (317)
                      +++..+++..|.... +     ..++||||| +|.||+.+|+.|+..|++|.++++++.        .+..+++++||+|
T Consensus         4 ~~~~~~~~~~~~~~~-~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~--------~~~~~~~~~aDvV   69 (298)
T 2pv7_A            4 ESYANENQFGFKTIN-S-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADVV   69 (298)
T ss_dssp             ---------CCCCSC-T-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSEE
T ss_pred             hHHhhhhccCccccC-C-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc--------cCHHHHhcCCCEE
Confidence            444555667785311 1     246899999 999999999999999999999998653        2577889999999


Q ss_pred             EEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CCcccCCCCceEEc
Q 042102          204 VVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPD--VPEELIGLENVVLL  281 (317)
Q Consensus       204 ~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~--~~~~L~~~pnvi~t  281 (317)
                      ++++|... +..++ ++....++++++++++++......+.+.+.+   ...     +....|.  +..+++...+++++
T Consensus        70 ilavp~~~-~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~-----~v~~hP~~g~~~~~~~g~~~~l~  139 (298)
T 2pv7_A           70 IVSVPINL-TLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGA-----VLGLHPMFGADIASMAKQVVVRC  139 (298)
T ss_dssp             EECSCGGG-HHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSE-----EEEEEECSCTTCSCCTTCEEEEE
T ss_pred             EEeCCHHH-HHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCC-----EEeeCCCCCCCchhhcCCeEEEe
Confidence            99999665 56665 3455678999999999876543344444432   122     2222332  12246666689999


Q ss_pred             ccC
Q 042102          282 PHV  284 (317)
Q Consensus       282 PH~  284 (317)
                      ||-
T Consensus       140 ~~~  142 (298)
T 2pv7_A          140 DGR  142 (298)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            974

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.10  E-value=1.1e-10  Score=114.48  Aligned_cols=109  Identities=10%  Similarity=0.142  Sum_probs=91.7

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------C--ccccCCHHHhcc---cCCEEEEeccCChhhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------N--YKYYPNLIDLAS---NCQILVVACSLTEETQ  214 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~--~~~~~~l~el~~---~aDvV~~~lp~~~~t~  214 (317)
                      .++|||||+|.||+.+|+.|...|++|.+||+++....        +  .....+++++++   .+|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            36899999999999999999999999999999875321        1  112467888876   5999999999988888


Q ss_pred             ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102          215 HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGA  257 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga  257 (317)
                      .++ ++..+.|++|.++||++++...+...+.+.+.+..+...
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fv  125 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFV  125 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccc
Confidence            877 577788999999999999999999999999988877633

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.08  E-value=7e-11  Score=107.87  Aligned_cols=135  Identities=12%  Similarity=0.136  Sum_probs=95.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--CCEEEEeCCCCCCC-----CCc--cccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--DCIIGYNSRTEKPN-----LNY--KYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~-----~~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|||||+|.||+.+++.|...  |.+|.++|+++...     .+.  ....++++++++||+|++++|.... ..++ +
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~-~~v~-~   84 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKT-IDFI-K   84 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHH-HHHH-H
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHH-HHHH-H
Confidence            6899999999999999999865  68999999875422     122  1245677888999999999996543 4454 3


Q ss_pred             HHHhc-cCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee---CCCC---CCCCC-cccCCCCceEEcccCCCc
Q 042102          220 QVINA-LGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD---VFEH---EPDVP-EELIGLENVVLLPHVASA  287 (317)
Q Consensus       220 ~~l~~-mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD---V~~~---EP~~~-~~L~~~pnvi~tPH~a~~  287 (317)
                      +..+. ++++.+++++++......+.+.+.+.+..+.  .++   ++..   .|... .+++.-++++++||.++.
T Consensus        85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~  158 (290)
T 3b1f_A           85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK  158 (290)
T ss_dssp             HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred             HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence            45566 8999999999887766667777777652333  233   2222   23222 267788889999987653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.08  E-value=2.6e-10  Score=111.07  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=98.8

Q ss_pred             ECCCCCCcCC-hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEe
Q 042102           77 TCSVGLDKID-LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILG  155 (317)
Q Consensus        77 ~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG  155 (317)
                      -+++|+..+- +.+.....|+|.|+.+....+.-+-..+.--++..           +.|.    ..+.++.|++++|+|
T Consensus       208 eTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~d-----------gi~r----~tg~~L~GKtVvVtG  272 (488)
T 3ond_A          208 ETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPD-----------GLMR----ATDVMIAGKVAVVAG  272 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHHH-----------HHHH----HHCCCCTTCEEEEEC
T ss_pred             cccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHHH-----------HHHH----HcCCcccCCEEEEEC
Confidence            4567777652 22334567999999775444322221111111111           1111    123468999999999


Q ss_pred             cChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcE
Q 042102          156 MGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV  230 (317)
Q Consensus       156 ~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gav  230 (317)
                      +|.||+.+|++|+++|++|+++++++...     .++ ...+++++++.+|+|+.+.    .+.++++.+.|+.||++++
T Consensus       273 aGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~-dv~~lee~~~~aDvVi~at----G~~~vl~~e~l~~mk~gai  347 (488)
T 3ond_A          273 YGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGL-QVLTLEDVVSEADIFVTTT----GNKDIIMLDHMKKMKNNAI  347 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGTTTTCSEEEECS----SCSCSBCHHHHTTSCTTEE
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCC-ccCCHHHHHHhcCEEEeCC----CChhhhhHHHHHhcCCCeE
Confidence            99999999999999999999999875332     122 2457889999999998764    3567899999999999999


Q ss_pred             EEEeCCCc
Q 042102          231 LINIGRGL  238 (317)
Q Consensus       231 lVN~~rg~  238 (317)
                      ++|+|++.
T Consensus       348 VvNaG~~~  355 (488)
T 3ond_A          348 VCNIGHFD  355 (488)
T ss_dssp             EEESSSTT
T ss_pred             EEEcCCCC
Confidence            99999983

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.06  E-value=1.5e-10  Score=104.62  Aligned_cols=163  Identities=15%  Similarity=0.082  Sum_probs=115.3

Q ss_pred             ceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHH
Q 042102           50 IQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY  129 (317)
Q Consensus        50 ~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~  129 (317)
                      +.++.+  +.++.++++..++++.-++....|+|.++.    +.|-.    .|+|+..     .+++.++.|        
T Consensus        54 ~~G~~v--t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~~----~g~ntd~-----~g~~~~l~~--------  110 (263)
T 2d5c_A           54 FRGVNL--TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGRL----FGFNTDA-----PGFLEALKA--------  110 (263)
T ss_dssp             CSEEEE--CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHH-----HHHHHHHHH--------
T ss_pred             CceEEE--cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCeE----EEeCCCH-----HHHHHHHHH--------
Confidence            445544  346778899999999999999999999975    34422    2455543     233333321        


Q ss_pred             HHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------CccccCCHHHhcccCCEE
Q 042102          130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------NYKYYPNLIDLASNCQIL  203 (317)
Q Consensus       130 ~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDvV  203 (317)
                                  .+.++.| +++|||+|.+|+.+++.|...|++|.+++|+.....      +.. ..+++++ +++|+|
T Consensus       111 ------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Div  175 (263)
T 2d5c_A          111 ------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLL  175 (263)
T ss_dssp             ------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEE
T ss_pred             ------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEE
Confidence                        1235789 999999999999999999999999999998754321      111 3567888 999999


Q ss_pred             EEeccCCh--hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          204 VVACSLTE--ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       204 ~~~lp~~~--~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++++|...  .+...+.   .+.+++|.+++|++.+. .+. .|.+++++..+.
T Consensus       176 i~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p-~~t-~l~~~a~~~g~~  224 (263)
T 2d5c_A          176 VNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRP-LWT-RFLREAKAKGLK  224 (263)
T ss_dssp             EECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSS-SSC-HHHHHHHHTTCE
T ss_pred             EEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCC-ccc-HHHHHHHHCcCE
Confidence            99999773  3334453   46689999999999874 344 477777765554

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.06  E-value=4.8e-11  Score=111.94  Aligned_cols=131  Identities=15%  Similarity=0.140  Sum_probs=91.1

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      ..+.+++|||||+|.||+.+|+.|+..|++|.+++++....      .+.... ++++++++||+|++++|.... ..++
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~-~~v~   89 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQ-GRLY   89 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHH-HHHH
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHH-HHHH
Confidence            45889999999999999999999999999999999876431      233223 788999999999999996653 5555


Q ss_pred             cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCc----ccCC---CCceEEcccCC
Q 042102          218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE----ELIG---LENVVLLPHVA  285 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~----~L~~---~pnvi~tPH~a  285 (317)
                      .++....|++|+++++++ |  +..  ....+.    ....+||+...|..+.    .++.   -.++++|||..
T Consensus        90 ~~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~  155 (338)
T 1np3_A           90 KEEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD  155 (338)
T ss_dssp             HHHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred             HHHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence            445667799999999874 3  222  111111    1223455555554332    2444   56788999954

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.04  E-value=2.9e-10  Score=111.47  Aligned_cols=109  Identities=13%  Similarity=0.218  Sum_probs=90.1

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C----CccccCCHHHhccc---CCEEEEeccCChhh
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L----NYKYYPNLIDLASN---CQILVVACSLTEET  213 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~----~~~~~~~l~el~~~---aDvV~~~lp~~~~t  213 (317)
                      ...++|||||+|.||+.+|+.|...|++|.+|+|++...     .    +.....+++++++.   +|+|++++|....+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            456789999999999999999999999999999976431     1    33445688888876   99999999998788


Q ss_pred             hccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          214 QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +.++ ++..+.+++|.++||++.|...+.+.+.+.+.+..+.
T Consensus        93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            8877 4667789999999999999988888888888876554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.03  E-value=3.3e-10  Score=103.67  Aligned_cols=107  Identities=16%  Similarity=0.266  Sum_probs=87.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~  221 (317)
                      ++|+|||+|.||+.+++.|...|++|.++++++...     .+.....+++++++++|+|++++|....++.++.  ++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            489999999999999999999999999999875432     2334456888999999999999998777776663  345


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .+.+++|.++|+++.|...+.+.|.+.+.+..+.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            5778999999999999887788898888775443

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.03  E-value=3.8e-10  Score=102.96  Aligned_cols=106  Identities=8%  Similarity=0.109  Sum_probs=85.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH--HH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR--QV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~--~~  221 (317)
                      ++|||||+|.||+.+++.|...|++|.+++ ++...     .+.....+++++++++|+|++++|....+..++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999998 65432     13334567889999999999999987766666542  44


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .+.+++|.++|+++.|...+.+.+.+.+.+..+.
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  116 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGAD  116 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            5678999999999999878888899888874443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.02  E-value=2.9e-10  Score=106.76  Aligned_cols=130  Identities=12%  Similarity=0.123  Sum_probs=87.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhccc----CCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASN----CQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~----aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|||||+|.||+++|+.|+..|++|.+||+++...     .+.....++++++++    ||+|++++|. ..+..++. 
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~-   86 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD-   86 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH-
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH-
Confidence            589999999999999999999999999999876432     233335678877764    7999999995 45666662 


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee---CCCCC---CCCC-cccCCCCceEEcccCC
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD---VFEHE---PDVP-EELIGLENVVLLPHVA  285 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD---V~~~E---P~~~-~~L~~~pnvi~tPH~a  285 (317)
                       .+..+++|++++|++.-..--.+++.+.+.  ...  .++   ++..|   |... ..|+.-.++++||+-.
T Consensus        87 -~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~--~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~  154 (341)
T 3ktd_A           87 -AVHTHAPNNGFTDVVSVKTAVYDAVKARNM--QHR--YVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQL  154 (341)
T ss_dssp             -HHHHHCTTCCEEECCSCSHHHHHHHHHTTC--GGG--EECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred             -HHHccCCCCEEEEcCCCChHHHHHHHHhCC--CCc--EecCCccccccccchhhhhhHHhcCCeEEEEeCCC
Confidence             344469999999998755322233333322  122  222   22222   1111 2588888899999743

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.01  E-value=1.5e-10  Score=103.50  Aligned_cols=92  Identities=17%  Similarity=0.282  Sum_probs=66.9

Q ss_pred             ccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC--------------C------CCccccCCHHHhcccCC
Q 042102          142 MTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP--------------N------LNYKYYPNLIDLASNCQ  201 (317)
Q Consensus       142 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~--------------~------~~~~~~~~l~el~~~aD  201 (317)
                      ...++.+++|||||+|.||+.+|+.|...|++|.+|+|+++.              .      .+.....++.+++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            456899999999999999999999999999999999987654              0      11223457889999999


Q ss_pred             EEEEeccCChhhhccccHHH-HhccCCCcEEEEeCC
Q 042102          202 ILVVACSLTEETQHIVNRQV-INALGPKGVLINIGR  236 (317)
Q Consensus       202 vV~~~lp~~~~t~~li~~~~-l~~mk~gavlVN~~r  236 (317)
                      +|++++|...... .+. +. ...+ +|.++|+++-
T Consensus        93 vVilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           93 LVVNATEGASSIA-ALT-AAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             EEEECSCGGGHHH-HHH-HHCHHHH-TTSEEEECCC
T ss_pred             EEEEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECCC
Confidence            9999999765443 222 22 2334 7999999993

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.01  E-value=4.1e-10  Score=103.11  Aligned_cols=107  Identities=12%  Similarity=0.142  Sum_probs=87.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~  221 (317)
                      ++|||||+|.||+.+++.|...|++|.++++++...     .+.....+++++++++|+|++++|....++.++.  ++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999875421     2334456888999999999999998777777764  355


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .+.+++|.++|++++|...+.+.+.+.+.+..+.
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~  118 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID  118 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6778999999999998877778888888775443

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.99  E-value=8.3e-10  Score=100.51  Aligned_cols=165  Identities=16%  Similarity=0.171  Sum_probs=112.8

Q ss_pred             CceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHH
Q 042102           49 SIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDR  128 (317)
Q Consensus        49 ~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~  128 (317)
                      +++++.++  .+..++++..++.+.-.+....++|.++.    +.|-.    .|+|+...     +++.++.+       
T Consensus        65 ~~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~nTd~~-----G~~~~l~~-------  122 (275)
T 2hk9_A           65 KVKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGYNTDWI-----GFLKSLKS-------  122 (275)
T ss_dssp             TCCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHHH-----HHHHHHHH-------
T ss_pred             CCCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----EeecCCHH-----HHHHHHHH-------
Confidence            46677664  45667788888888888888888888754    34522    24555332     33333321       


Q ss_pred             HHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCE
Q 042102          129 YVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQI  202 (317)
Q Consensus       129 ~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDv  202 (317)
                                   .+.++.|++++|||.|.+|+.+++.|...|++|.+++|+....      .+.....++.++++++|+
T Consensus       123 -------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDi  189 (275)
T 2hk9_A          123 -------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQV  189 (275)
T ss_dssp             -------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSE
T ss_pred             -------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCE
Confidence                         0224788999999999999999999999999999999875421      122223478888999999


Q ss_pred             EEEeccCChh--hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          203 LVVACSLTEE--TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       203 V~~~lp~~~~--t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      |++++|....  +...++   ++.+++|.++++++.   .. ..+.+..++..+.
T Consensus       190 Vi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~~-t~ll~~a~~~g~~  237 (275)
T 2hk9_A          190 IVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---KE-TKLLKKAKEKGAK  237 (275)
T ss_dssp             EEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---SC-CHHHHHHHHTTCE
T ss_pred             EEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---Ch-HHHHHHHHHCcCE
Confidence            9999997642  223443   456899999999988   33 3455555544443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.98  E-value=4.2e-10  Score=102.77  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH--HH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR--QV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~--~~  221 (317)
                      ++|||||+|.||+.+++.|...|++|.+|++++...     .+.....+++++++++|+|++++|....++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            479999999999999999999999999999876532     23334568889999999999999988777776643  24


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      ++.+++|.++|+++....-+.+.+.+.+.+.
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            5678999999998877776666777777653

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.98  E-value=1.2e-09  Score=107.63  Aligned_cols=106  Identities=13%  Similarity=0.200  Sum_probs=89.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CCccccCCHHHhccc---CCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYYPNLIDLASN---CQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~~---aDvV~~~lp~~~~t~~  215 (317)
                      .+|||||+|.||+.+|..|...|++|.+|+|++...          .+.....+++++++.   +|+|++++|....++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   90 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA   90 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence            489999999999999999999999999999986432          123345688888876   9999999998888888


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++ ++..+.+++|.++|+++.+...+.+.+.+.+.+..+.
T Consensus        91 vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           91 LI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             HH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            77 5667789999999999999888888888888875554

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.97  E-value=9.6e-10  Score=101.58  Aligned_cols=107  Identities=17%  Similarity=0.246  Sum_probs=86.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH--HH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR--QV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~--~~  221 (317)
                      ++|||||+|.||+.+|+.|...|++|.++++++...     .+.....++.++++++|+|++++|....++.++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            689999999999999999999999999999876542     23334567889999999999999977777666543  24


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++.+++|.++|+++++.....+.+.+.+....+.
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            5678999999999998877778888888665444

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.95  E-value=7.9e-10  Score=100.45  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=83.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      ++|||||+|.||+.+++.|.. |++|.++++++....     +..... ++++++++|+|++++|....+..++ ++..+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 999999998764321     122223 6788899999999999776676655 45567


Q ss_pred             ccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .+++|.++|+++.+...+.+.+.+.+.+..+.
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  110 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGVT  110 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            78999999999998888888899988875443

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.95  E-value=4.6e-09  Score=95.08  Aligned_cols=139  Identities=16%  Similarity=0.158  Sum_probs=92.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCc--cccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNY--KYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      ++|+|||+|.||+.+++.|...|++|.++++++...     .+.  ....+++++ +++|+|++++|.. .+..++ ++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~-~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQ-LILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHH-HHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHH-HHHHHH-HHH
Confidence            479999999999999999999999999999875421     121  124577888 9999999999943 445555 345


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCC---CCCCc-ccCCCCceEEcccCCCccHHHHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHE---PDVPE-ELIGLENVVLLPHVASATVETRKA  294 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~E---P~~~~-~L~~~pnvi~tPH~a~~t~~~~~~  294 (317)
                      .+.+++++++|+++.......+.+.+.+.  ++-+. .-++..+   |.... .++.-+.++++|+-++ +.+..+.
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~-~~~~~~~  150 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT-DPEQLAC  150 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTTC-CHHHHHH
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCCCC-CHHHHHH
Confidence            56789999999997766555555555433  33221 1233212   22112 4667778899997543 4444333

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.90  E-value=1.4e-09  Score=106.19  Aligned_cols=130  Identities=11%  Similarity=0.131  Sum_probs=92.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--CCEEEEeCCCCCCC------------------------CCccccCCHHHhcccCCE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--DCIIGYNSRTEKPN------------------------LNYKYYPNLIDLASNCQI  202 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~------------------------~~~~~~~~l~el~~~aDv  202 (317)
                      ++|+|||+|.||..+|..|...  |++|.++|++++..                        .+.....++.+.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999887  89999999865321                        012223577888999999


Q ss_pred             EEEeccCChhhhccc-------------cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee---CCCCCC
Q 042102          203 LVVACSLTEETQHIV-------------NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD---VFEHEP  266 (317)
Q Consensus       203 V~~~lp~~~~t~~li-------------~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD---V~~~EP  266 (317)
                      |++|+|......+.+             .+...+.|++|+++|++|+..+-..+.+.+.+++....  .+|   ++.+|+
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~  163 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF  163 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence            999998654433211             13355678999999999998887778888888875422  233   345565


Q ss_pred             CCCc----ccCCCCceEE
Q 042102          267 DVPE----ELIGLENVVL  280 (317)
Q Consensus       267 ~~~~----~L~~~pnvi~  280 (317)
                      ..+.    .+...+++++
T Consensus       164 ~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          164 LAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCTTSHHHHHHSCSCEEE
T ss_pred             hhcccchhhccCCCEEEE
Confidence            5443    3566777764

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.90  E-value=1.2e-09  Score=105.88  Aligned_cols=93  Identities=17%  Similarity=0.393  Sum_probs=72.3

Q ss_pred             cccccC-CeEEEEecChhHHHHHHHHhhC------CCEEEEeCCC-CCCC-----CCccc----cCCHHHhcccCCEEEE
Q 042102          143 TTKFTG-KSVGILGMGRIGTAIAKRAEAF------DCIIGYNSRT-EKPN-----LNYKY----YPNLIDLASNCQILVV  205 (317)
Q Consensus       143 ~~~l~g-~~vgIiG~G~iG~~~a~~l~~~------G~~V~~~~~~-~~~~-----~~~~~----~~~l~el~~~aDvV~~  205 (317)
                      ...|+| ++|||||+|.||+++|+.|+..      |++|++..+. .+..     .+...    ..++.+++++||+|++
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVIL  127 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLL  127 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEE
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEE
Confidence            467899 9999999999999999999987      9988755443 2211     23322    2578999999999999


Q ss_pred             eccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          206 ACSLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       206 ~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      ++|..... .++. +.++.||+|++ |..+.|-
T Consensus       128 aVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaGf  157 (525)
T 3fr7_A          128 LISDAAQA-DNYE-KIFSHMKPNSI-LGLSHGF  157 (525)
T ss_dssp             CSCHHHHH-HHHH-HHHHHSCTTCE-EEESSSH
T ss_pred             CCChHHHH-HHHH-HHHHhcCCCCe-EEEeCCC
Confidence            99987664 4665 68899999999 5777773

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.89  E-value=3.9e-09  Score=97.01  Aligned_cols=134  Identities=17%  Similarity=0.138  Sum_probs=89.4

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------------CccccCCHHHhcccCCEEEEeccCChhh
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------------NYKYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      -+.|+|||||+|.||..||..+. .|++|.+||+++....            +.....++++ +++||+|+.++|.+.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            46789999999999999999999 9999999999864321            1223456666 89999999999999887


Q ss_pred             hccccHHHHhccCCCcEEE-EeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHH
Q 042102          214 QHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETR  292 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlV-N~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~  292 (317)
                      +..+-++ ++.+ ++++++ |+|.-+   ...+.+.+. ...+..++-.|.  |.     ...+-+.++|+-. .+.+..
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~---~~~~a~~~~-~~~r~~G~Hf~~--Pv-----~~~~lveiv~g~~-t~~~~~  153 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVIS---VDDIAERLD-SPSRFLGVHWMN--PP-----HVMPLVEIVISRF-TDSKTV  153 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSC---HHHHHTTSS-CGGGEEEEEECS--ST-----TTCCEEEEEECTT-CCHHHH
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcC---HHHHHHHhh-cccceEeEEecC--cc-----ccCCEEEEECCCC-CCHHHH
Confidence            6655333 5667 999985 777644   344444332 223334555554  32     3356677887532 344444


Q ss_pred             HHH
Q 042102          293 KAM  295 (317)
Q Consensus       293 ~~~  295 (317)
                      ++.
T Consensus       154 ~~~  156 (293)
T 1zej_A          154 AFV  156 (293)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.89  E-value=2.6e-09  Score=104.74  Aligned_cols=106  Identities=10%  Similarity=0.163  Sum_probs=86.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CCccccCCHHHhcc---cCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYYPNLIDLAS---NCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~---~aDvV~~~lp~~~~t~~  215 (317)
                      ++|||||+|.||+.+|..|...|++|.+|+|++...          .+.....+++++++   .+|+|++++|....++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            579999999999999999999999999999876431          12334567888864   89999999998877887


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++ ++....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~  121 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            77 3566789999999999999887878888888775554

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.88  E-value=2.3e-09  Score=105.01  Aligned_cols=106  Identities=16%  Similarity=0.265  Sum_probs=87.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C----CccccCCHHHhccc---CCEEEEeccCChhhhcc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L----NYKYYPNLIDLASN---CQILVVACSLTEETQHI  216 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~----~~~~~~~l~el~~~---aDvV~~~lp~~~~t~~l  216 (317)
                      ++|||||+|.||+.+|+.|...|++|.+|+|++...     .    +.....+++++++.   +|+|++++|....++.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            589999999999999999999999999999875431     1    33345688888776   99999999988777777


Q ss_pred             ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      + ++....+++|.++|+++.|...+.+.+.+.+.+..+.
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            7 4566789999999999999877888888888765554

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.37  E-value=2.6e-10  Score=99.28  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=72.0

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.+++|||||+|.||+.+++.|...|++|.+++|+....    .+.. ..++.++++++|+|++++|.. .++.++   .
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~-~~~~~~~~~~aDvVilav~~~-~~~~v~---~   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAE-VLCYSEAASRSDVIVLAVHRE-HYDFLA---E   91 (201)
Confidence            677899999999999999999999999999999876521    1112 236778899999999999975 566665   2


Q ss_pred             HhccCCCcEEEEeCCCccc
Q 042102          222 INALGPKGVLINIGRGLLV  240 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~v  240 (317)
                      +..+++++++||+++|-..
T Consensus        92 l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            4556789999999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.85  E-value=4.7e-09  Score=102.87  Aligned_cols=106  Identities=16%  Similarity=0.247  Sum_probs=86.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CC-------ccccCCHHHhcc---cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LN-------YKYYPNLIDLAS---NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~-------~~~~~~l~el~~---~aDvV~~~lp~~~~  212 (317)
                      ++|||||+|.||+.+|..|...|++|.+|+|++...      .+       .....+++++++   .+|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            479999999999999999999999999999875421      12       234567888877   49999999998877


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++.++ ++....+++|.++|+++.|...+.+.+.+.+.+..+.
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence            77777 4566788999999999999887888888888876554

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.84  E-value=5.8e-09  Score=91.04  Aligned_cols=80  Identities=20%  Similarity=0.325  Sum_probs=63.4

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      .++.+++|+|||+|.||+.+|+.|...|.+|.+++++++             .+++||+|++++| ...++.++. +..+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------~~~~aD~vi~av~-~~~~~~v~~-~l~~   79 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------ATTLGEIVIMAVP-YPALAALAK-QYAT   79 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------CSSCCSEEEECSC-HHHHHHHHH-HTHH
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------HhccCCEEEEcCC-cHHHHHHHH-HHHH
Confidence            357889999999999999999999999999999998754             5678999999999 666666653 3445


Q ss_pred             ccCCCcEEEEeCCCcc
Q 042102          224 ALGPKGVLINIGRGLL  239 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~  239 (317)
                      .++ ++++|++++|--
T Consensus        80 ~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           80 QLK-GKIVVDITNPLN   94 (209)
T ss_dssp             HHT-TSEEEECCCCBC
T ss_pred             hcC-CCEEEEECCCCC
Confidence            677 999999999765

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.83  E-value=1.8e-08  Score=97.95  Aligned_cols=176  Identities=15%  Similarity=0.139  Sum_probs=107.7

Q ss_pred             CCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc----ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEE
Q 042102          101 PDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE----FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY  176 (317)
Q Consensus       101 ~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~----~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~  176 (317)
                      .|.|-..|.|.+.++++..-|         ..++|...+    +.....-.=++|||||.|.||..+|..+...|++|.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~a~~---------~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l   82 (460)
T 3k6j_A           12 TGENLYFQGSEVRSYLMEAHS---------LAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFL   82 (460)
T ss_dssp             TSGGGGGCBCHHHHHHHHTTC---------CTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cccchhhhhHHHHHHHHhHHH---------hhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            344555566666666666222         234576321    1111111236899999999999999999999999999


Q ss_pred             eCCCCCCC-------------CC-------------ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcE
Q 042102          177 NSRTEKPN-------------LN-------------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV  230 (317)
Q Consensus       177 ~~~~~~~~-------------~~-------------~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gav  230 (317)
                      +|++++..             .+             .....+++ .+++||+|+.++|.+.+.+.-+-++..+.++++++
T Consensus        83 ~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aI  161 (460)
T 3k6j_A           83 VVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCI  161 (460)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCE
T ss_pred             EECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCE
Confidence            99876510             11             01234564 68999999999998877665444667778999999


Q ss_pred             EEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHH
Q 042102          231 LINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD  297 (317)
Q Consensus       231 lVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~  297 (317)
                      |++.+.+  +....+.+.+.. +-+..++..|.  |..     ..+-+.+.|+-. .+.+..+++..
T Consensus       162 lasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-----~m~LvEIv~g~~-Ts~e~~~~~~~  217 (460)
T 3k6j_A          162 FGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN-----VIRLVEIIYGSH-TSSQAIATAFQ  217 (460)
T ss_dssp             EEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT-----TCCEEEEECCSS-CCHHHHHHHHH
T ss_pred             EEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh-----hCCEEEEEeCCC-CCHHHHHHHHH
Confidence            9654443  344555555432 33445666665  322     234466777522 34444444433

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.81  E-value=2.2e-09  Score=96.66  Aligned_cols=97  Identities=12%  Similarity=0.284  Sum_probs=75.2

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+++.+++|||||+|.||+.+++.+...|++ |.+++++++..      .+.....+++++++++|+|++++|... ...
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~-~~~   83 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSA-FAE   83 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHH-HHH
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHH-HHH
Confidence            3456678999999999999999999988998 88999875432      133345678899999999999999663 344


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccC
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      ++ ++..+.+++|+++|+++.|...+
T Consensus        84 v~-~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           84 LL-QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             HH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             HH-HHHHhhcCCCcEEEECCCCCchH
Confidence            44 34556788999999999987654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.80  E-value=3.5e-09  Score=95.15  Aligned_cols=98  Identities=12%  Similarity=0.145  Sum_probs=76.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCC--CCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT--EKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~--~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      ++|||||+|.||+.+++.|...|++|.++++.  +...     .+..  .++++++++||+|++++|.......+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            47999999999999999999999999998873  2111     1222  56788899999999999987665554  456


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      .+.+++  ++|+++.+...+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            667776  99999988777777888877653

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.78  E-value=6.4e-09  Score=98.32  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=81.2

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------CccccCCHHHhcc-cCCEEEEeccCChhhhccc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------NYKYYPNLIDLAS-NCQILVVACSLTEETQHIV  217 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~-~aDvV~~~lp~~~~t~~li  217 (317)
                      +|.|++|+|+|+|+||+.+|++|..+|++|+++|++.....      +.. ..+.++++. +||+++.|.     +.++|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~-~v~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEChHHHhccCCcEeeccc-----hHHHh
Confidence            68999999999999999999999999999999998654221      221 235566665 899998773     57788


Q ss_pred             cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +.+.++.|+ ..++++.+++.+.+++ ..+.|+++.+.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            888888884 5788999999988865 55677777764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.76  E-value=1.1e-07  Score=89.70  Aligned_cols=211  Identities=12%  Similarity=0.068  Sum_probs=130.1

Q ss_pred             CCChhHHHHHHh-cCeEEEecCCC---C--hHHHH----------hhccCCceEEEEeCCCCCCHHHHhcCCCceEEEEC
Q 042102           15 PVSNYLEQEIEK-SFKVFKLWHFE---D--KEQFI----------NTHKDSIQAVVGSAAAGADAELIESLPKLEIVATC   78 (317)
Q Consensus        15 ~~~~~~~~~l~~-~~~~~~~~~~~---~--~~~~~----------~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~   78 (317)
                      ++.|+..++|.+ .+++..-....   .  ++++.          .+.+ ++|+|+. ...+...+.....+++.++...
T Consensus        17 ~~~P~~v~~l~~~g~~v~ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~-~ad~i~~-vksP~~~~~~~~~~g~~~~~y~   94 (361)
T 1pjc_A           17 GLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVK-VKEPLPAEYDLMQKDQLLFTYL   94 (361)
T ss_dssp             SCCHHHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEEC-SSCCCGGGGGGCCTTCEEEECC
T ss_pred             CcCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEECCHHHHh-cCCeEEE-ECCCCHHHHHhhcCCCEEEEEe
Confidence            467888888855 57765422111   1  23332          1223 5787664 3444433433334677677666


Q ss_pred             CCCCCcCChhhHhhCCcEEEeC---CCCC-----cHHHHHHHH--HHHHHHhhchhHHHHHHHcC--CCccCcccccccc
Q 042102           79 SVGLDKIDLARCKEKGIRVANT---PDVL-----TDDVADLAI--GLILAVLRRICESDRYVRSG--EWKKGEFKMTTKF  146 (317)
Q Consensus        79 ~~G~d~id~~~~~~~gI~v~n~---~~~~-----~~~vAE~al--~~~L~~~r~~~~~~~~~~~~--~w~~~~~~~~~~l  146 (317)
                      ...++.-.++.+.++|+...|.   |...     -.++++.+-  +.++.+ .++...    ..|  .+..   .. ..+
T Consensus        95 ~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA-~nt~~~----~~g~G~~l~---~l-~~l  165 (361)
T 1pjc_A           95 HLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGA-RFLERQ----QGGRGVLLG---GV-PGV  165 (361)
T ss_dssp             CGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHH-HHTSGG----GTSCCCCTT---CB-TTB
T ss_pred             ccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHH-HHHhhc----cCCCceecc---CC-CCC
Confidence            6666665567788889888763   4321     245555443  334433 222111    111  1100   01 247


Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Cccc-------cCCHHHhcccCCEEEEeccCCh-hh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYKY-------YPNLIDLASNCQILVVACSLTE-ET  213 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-------~~~l~el~~~aDvV~~~lp~~~-~t  213 (317)
                      .+++|.|+|.|.+|+.+++.++.+|++|.++++++.+..     ....       ..++.+.+..+|+|+.+++... ..
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~  245 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA  245 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCC
Confidence            789999999999999999999999999999998764321     0011       1245567789999999887543 23


Q ss_pred             hccccHHHHhccCCCcEEEEeCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ..++.++.++.|++|+++||++-
T Consensus       246 ~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          246 PILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CeecCHHHHhhCCCCCEEEEEec
Confidence            45568889999999999999974

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.72  E-value=3e-08  Score=95.72  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=81.2

Q ss_pred             cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----C-------------------CccccCCHHHhc
Q 042102          141 KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----L-------------------NYKYYPNLIDLA  197 (317)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~-------------------~~~~~~~l~el~  197 (317)
                      .++++..-++|+|||+|.||..+|..|.. |.+|++||+++...    .                   ......++.+++
T Consensus        29 ~~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~  107 (432)
T 3pid_A           29 QMGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY  107 (432)
T ss_dssp             ------CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred             ccccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence            35667777899999999999999999988 99999999875421    0                   122346788999


Q ss_pred             ccCCEEEEeccCChh----------hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102          198 SNCQILVVACSLTEE----------TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRL  254 (317)
Q Consensus       198 ~~aDvV~~~lp~~~~----------t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i  254 (317)
                      +.||+|++++|....          .+..+ +...+ +++|+++|+.|.-.+--.+.+.+.+.+..+
T Consensus       108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~-~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          108 RNADYVIIATPTDYDPKTNYFNTSTVEAVI-RDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             TTCSEEEECCCCEEETTTTEEECHHHHHHH-HHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             hCCCEEEEeCCCccccccccccHHHHHHHH-HHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            999999999996532          12111 44556 999999999998887777888888876544

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.70  E-value=1.4e-08  Score=82.92  Aligned_cols=85  Identities=20%  Similarity=0.287  Sum_probs=68.0

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------C--ccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------N--YKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      |++|+|||.|.||+.+++.|+..|++|.+++++.....      +  .....++.++++++|+|+.++|..   ..++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence            88999999999999999999999999999998764321      1  123567889999999999999966   234554


Q ss_pred             HHHhccCCCcEEEEeCCCc
Q 042102          220 QVINALGPKGVLINIGRGL  238 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~  238 (317)
                         +.+++|.+++|++...
T Consensus        98 ---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             ---GGCCTTCEEEECCSSC
T ss_pred             ---HHcCCCCEEEEccCCc
Confidence               4568899999998754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.70  E-value=7.9e-08  Score=88.22  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=71.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C------------------ccccCCHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N------------------YKYYPNLI  194 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~------------------~~~~~~l~  194 (317)
                      ++|+|||+|.||..+|..+...|++|.++|+++....                +                  .....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            5899999999999999999999999999998753210                0                  11245777


Q ss_pred             HhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          195 DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       195 el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      +.++.||+|++++|...+...-+-++..+.++++++++....+-  ..+.+.+.+
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~  148 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANAT  148 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhc
Confidence            88999999999999876544333344555688899988654443  334555544

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.66  E-value=5.7e-08  Score=79.38  Aligned_cols=104  Identities=13%  Similarity=0.179  Sum_probs=80.3

Q ss_pred             cccCCeEEEEec----ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102          145 KFTGKSVGILGM----GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       145 ~l~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      -++-++|+|||.    |.+|+.+++.|...|++|+.+++......+...+.+++|+....|++++++| .+....++. +
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~-~   88 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-E   88 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-H
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHH-H
Confidence            356779999999    9999999999999999988888876544566667889999999999999999 466666664 3


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ..+ ...++++++++.    ..+.+.+..++..+.
T Consensus        89 ~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           89 AVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            333 566777777643    257788888887776

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.64  E-value=2.4e-07  Score=82.83  Aligned_cols=99  Identities=22%  Similarity=0.376  Sum_probs=70.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      .++|||||+|.||+.+++.|...|    .+|.+|+++++. .+.....+..+++++||+|++++|. ..+..++. +..+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~-~l~~   80 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVLN-NIKP   80 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHHH-HSGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            468999999999999999998888    689999988765 3444456788999999999999994 44555442 3444


Q ss_pred             ccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          224 ALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      .++ +.++|....|  ++.+.+.+.+..+
T Consensus        81 ~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           81 YLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             GCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             hcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            564 5555555444  3345666666543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.63  E-value=8.6e-08  Score=92.69  Aligned_cols=102  Identities=9%  Similarity=0.090  Sum_probs=76.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------------------------CC-ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------------------------LN-YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------------------~~-~~~~~~l~el~~~aDvV  203 (317)
                      ++|+|||+|.||..+|..|...|.+|.++|++++..                        .+ .....++++.++.||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            479999999999999999999999999999865321                        01 22345778889999999


Q ss_pred             EEeccCChh---------hhccccHHHHhccCC---CcEEEEeCCCcccC-HHHHHHHHHh
Q 042102          204 VVACSLTEE---------TQHIVNRQVINALGP---KGVLINIGRGLLVD-EHELVSALLQ  251 (317)
Q Consensus       204 ~~~lp~~~~---------t~~li~~~~l~~mk~---gavlVN~~rg~~vd-~~aL~~al~~  251 (317)
                      ++++|....         +...+ +...+.+++   +.++|+.|...+-. .+.+.+.+++
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999996654         33322 344556888   99999998766545 5667777765

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.63  E-value=1.7e-08  Score=88.30  Aligned_cols=90  Identities=18%  Similarity=0.194  Sum_probs=68.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      .+++|+|||+|.||+.+++.|...|.+|.+++|+.+..     .+.... +++++++++|+|++++|. .....++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            45799999999999999999999999999999875421     122222 788889999999999995 34555553   


Q ss_pred             HhccCCCcEEEEeCCCcccC
Q 042102          222 INALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd  241 (317)
                      +..+.+++++|++++|...+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33334799999999987543

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.59  E-value=3.3e-08  Score=90.04  Aligned_cols=87  Identities=13%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      ++|||||+ |.||+.+++.|...|++|.++++++...     .+.. ..+..+++++||+|++++|... +..++ ++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~-~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCC-CCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCC-cCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            58999999 9999999999999999999999875431     1221 2367788999999999999654 45555 4555


Q ss_pred             hccCCCcEEEEeCCCc
Q 042102          223 NALGPKGVLINIGRGL  238 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~  238 (317)
                      ..+++++++|+++.|.
T Consensus        89 ~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           89 PRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGSCTTCEEEESCSHH
T ss_pred             HhCCCCCEEEECCCCc
Confidence            6789999999988876

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.58  E-value=1.4e-07  Score=91.70  Aligned_cols=102  Identities=9%  Similarity=0.128  Sum_probs=76.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------------------------C-CccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------------------------L-NYKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------------------~-~~~~~~~l~el~~~aDvV  203 (317)
                      ++|+|||+|.||..+|..|...|.+|.+||+++...                        . ......+++++++.||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            589999999999999999999999999999875321                        0 012346788899999999


Q ss_pred             EEeccCCh---------hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          204 VVACSLTE---------ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       204 ~~~lp~~~---------~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      ++++|...         ..+..+ +...+.+++|.++|+.|.-.+-..+.+.+.+++
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998653         333333 456677899999999996554445556555554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.58  E-value=4.3e-08  Score=90.76  Aligned_cols=105  Identities=14%  Similarity=0.177  Sum_probs=76.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCC------CC--ccccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPN------LN--YKYYPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~------~~--~~~~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      .+++|||||+|.||+.+++.+.. +|. +|.+|+|++...      .+  .....+++++++++|+|++++|..   ..+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v  210 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPI  210 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Ccc
Confidence            46799999999999999999865 487 899999976432      12  334578999999999999999953   456


Q ss_pred             ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102          217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD  260 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD  260 (317)
                      +..   +.+++|.++++++....-. ..+.+.+.+...  ..+|
T Consensus       211 ~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          211 LFG---EWVKPGAHINAVGASRPDW-RELDDELMKEAV--LYVD  248 (312)
T ss_dssp             BCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSE--EEES
T ss_pred             cCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCE--EEEC
Confidence            654   5689999999998765522 333333333222  3667

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.56  E-value=8.7e-08  Score=85.74  Aligned_cols=96  Identities=19%  Similarity=0.287  Sum_probs=73.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      ++|||||+|.||+.+++.|...|.+|.++++++...      .+.....+++++++++|+|++++| ....     .+.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence            589999999999999999999999999999875432      133345678899999999999999 3333     3445


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      ..+++|.++|++..|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            55778999999976643  34566666543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.56  E-value=7.7e-08  Score=89.28  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=76.2

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCC--CC-----CCccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEK--PN-----LNYKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~--~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      ...++|||||+|.||..+|..|...|    .+|.+++|++.  ..     .+.....+..++++.||+|++++| ...+.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            44568999999999999999999888    78999998864  21     133344578889999999999999 45555


Q ss_pred             ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          215 HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      .++ ++....++++.++|+++.|--  .+.+.+.+.+
T Consensus        99 ~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           99 FIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             HHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            555 345556889999999977643  4456666654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.56  E-value=5.2e-08  Score=86.87  Aligned_cols=99  Identities=15%  Similarity=0.225  Sum_probs=73.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC----EEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC----IIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ++|||||+|.||+.+++.|...|.    +|.+|+|+++..      .+.....+..+++++||+|++++|.. ....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~-~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPD-LYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTT-THHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHH-HHHHHH-
Confidence            589999999999999999999998    999999986532      13344578899999999999999743 344444 


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      ++....++++.++|.+..|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            34555688999999776554  34566666643

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.53  E-value=4.2e-07  Score=88.14  Aligned_cols=102  Identities=11%  Similarity=0.184  Sum_probs=77.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CC---------------------ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LN---------------------YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~---------------------~~~~~~l~el~~~aDvV  203 (317)
                      -+++|||+|.+|..+|..|...|.+|++||++++..    .+                     .....++.+.+++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            379999999999999999999999999999886531    00                     12346788999999999


Q ss_pred             EEeccCChh----------hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          204 VVACSLTEE----------TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       204 ~~~lp~~~~----------t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      ++|+|....          .+..+ +...+.+++|.++|+.|.-.+--.+.+.+.+.+
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e  145 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE  145 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence            999885432          33333 456678999999999986555455666666655

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.49  E-value=1.3e-07  Score=77.88  Aligned_cols=102  Identities=16%  Similarity=0.219  Sum_probs=79.6

Q ss_pred             CCeEEEEec----ChhHHHHHHHHhhCCCEEEEeCCCC--CCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          148 GKSVGILGM----GRIGTAIAKRAEAFDCIIGYNSRTE--KPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       148 g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~--~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      -++|+|||+    |.+|..+++.|+..|++|+.+++..  ....+...+.++.++....|++++++| .+....++. +.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~-~~   90 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ-EA   90 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH-HH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH-HH
Confidence            678999999    8999999999999999988888876  444455667789999899999999999 466666664 33


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceE
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGG  256 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~g  256 (317)
                      .+ ...++++++.+  ..  ++.+.+.+++..+.-
T Consensus        91 ~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~~  120 (145)
T 2duw_A           91 IA-IGAKTLWLQLG--VI--NEQAAVLAREAGLSV  120 (145)
T ss_dssp             HH-HTCCEEECCTT--CC--CHHHHHHHHTTTCEE
T ss_pred             HH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCEE
Confidence            33 56677888753  22  678888888888773

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.47  E-value=2.1e-07  Score=84.81  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=78.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC---EEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC---IIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      .++|||||+|+||+.+++.+...|+   +|.+++|++...      .+.....+..+++++||+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4689999999999999999999898   899999986532      1344456888999999999999974 3344444 


Q ss_pred             HHHHhc-cCCCcEEEEeCCCcccCHHHHHHHHHh-CCceEE
Q 042102          219 RQVINA-LGPKGVLINIGRGLLVDEHELVSALLQ-GRLGGA  257 (317)
Q Consensus       219 ~~~l~~-mk~gavlVN~~rg~~vd~~aL~~al~~-g~i~ga  257 (317)
                      ++.-.. ++++.++|++.-|--  .+.|.+.+.. .++.++
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~~~~vvr~  119 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGVT--TPLIEKWLGKASRIVRA  119 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHTCCSSEEEE
T ss_pred             HHHHhhccCCCeEEEEecCCCC--HHHHHHHcCCCCeEEEE
Confidence            334444 688889998876643  4677777754 244433

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.47  E-value=2.9e-07  Score=90.17  Aligned_cols=134  Identities=16%  Similarity=0.215  Sum_probs=88.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CCc-------------cccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LNY-------------KYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~~-------------~~~~~l~el~~~  199 (317)
                      ++|||||+|.||..+|..+...|++|.++|++++..                .+.             ....+++ .+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   84 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAA   84 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcC
Confidence            589999999999999999999999999999876421                110             1234554 6899


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCce
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVL-INIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENV  278 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnv  278 (317)
                      ||+|+.++|.+.+...-+-++..+.+++++++ .|+|.-   ....+.+.+. ..-...++..|.+-|.       .+-+
T Consensus        85 aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti---~i~~ia~~~~-~p~~~ig~hf~~Pa~v-------~~Lv  153 (483)
T 3mog_A           85 ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI---SITAIAAEIK-NPERVAGLHFFNPAPV-------MKLV  153 (483)
T ss_dssp             CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS---CHHHHTTTSS-SGGGEEEEEECSSTTT-------CCEE
T ss_pred             CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC---CHHHHHHHcc-CccceEEeeecChhhh-------CCeE
Confidence            99999999988766543445566778999998 466653   3345555443 2333456666654332       2446


Q ss_pred             EEcccCCCccHHHHHHH
Q 042102          279 VLLPHVASATVETRKAM  295 (317)
Q Consensus       279 i~tPH~a~~t~~~~~~~  295 (317)
                      .+.|+-. .+.+..+++
T Consensus       154 evv~g~~-Ts~e~~~~~  169 (483)
T 3mog_A          154 EVVSGLA-TAAEVVEQL  169 (483)
T ss_dssp             EEEECSS-CCHHHHHHH
T ss_pred             EEecCCC-CCHHHHHHH
Confidence            6666532 234443333

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.46  E-value=9e-08  Score=85.69  Aligned_cols=96  Identities=19%  Similarity=0.224  Sum_probs=69.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      ++|||||+|.||+.+++.|...| .+|.+++|+++..      .+.....++.+++ ++|+|++++| ......++.+  
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~--   76 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN--   76 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT--
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH--
Confidence            47999999999999999999889 8999999875432      1333345667778 9999999999 5554444421  


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      +.. + +.++|+++.|--  .+.+.+.+..+
T Consensus        77 l~~-~-~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           77 IRT-N-GALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             CCC-T-TCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             hcc-C-CCEEEEecCCCC--HHHHHHHcCCC
Confidence            122 4 899999865543  36677766653

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.46  E-value=3.4e-07  Score=83.29  Aligned_cols=126  Identities=15%  Similarity=0.204  Sum_probs=88.2

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|+++++..         .++.+.+++||+|+.+++    ..++|.++.
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg----~p~lI~~~~  220 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVG----KPGFIPGDW  220 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSC----CTTCBCTTT
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhccCCEEEECCC----CcCcCCHHH
Confidence            3469999999999997 59999999999999999886432         478999999999999998    334687766


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVG  301 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~  301 (317)
                         +|+|+++||+|.-.+-|          |++   .-||-..+      ..+. --.+||==||...-...-+.+.+++
T Consensus       221 ---vk~GavVIDVgi~r~~~----------g~l---~GDVdf~~------v~~~-a~~iTPVPGGVGpmT~a~Ll~Ntv~  277 (288)
T 1b0a_A          221 ---IKEGAIVIDVGINRLEN----------GKV---VGDVVFED------AAKR-ASYITPVPGGVGPMTVATLIENTLQ  277 (288)
T ss_dssp             ---SCTTCEEEECCCEECTT----------SCE---ECSBCHHH------HHHH-CSEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             ---cCCCcEEEEccCCccCC----------CCc---cCCcCHHH------Hhhh-ccEecCCCCCccHHHHHHHHHHHHH
Confidence               48999999999765432          444   45663211      1111 2268887777665443333333333


Q ss_pred             HHH
Q 042102          302 NLQ  304 (317)
Q Consensus       302 nl~  304 (317)
                      ..+
T Consensus       278 aa~  280 (288)
T 1b0a_A          278 ACV  280 (288)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.45  E-value=3.8e-07  Score=80.75  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=74.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEE-EEeCCCCCCCCCccccCCHHHhc-ccCCEEEEeccCChhhhccccHHHHhccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCII-GYNSRTEKPNLNYKYYPNLIDLA-SNCQILVVACSLTEETQHIVNRQVINALG  226 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V-~~~~~~~~~~~~~~~~~~l~el~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk  226 (317)
                      ++|||||+|.||+.+++.+..-|+++ .++|++.+...   .+.++++++ .++|+|++++|.....     +-....++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~---~~~~~~~l~~~~~DvVv~~~~~~~~~-----~~~~~~l~   72 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEK---MVRGIDEFLQREMDVAVEAASQQAVK-----DYAEKILK   72 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCTT---EESSHHHHTTSCCSEEEECSCHHHHH-----HHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchhh---hcCCHHHHhcCCCCEEEECCCHHHHH-----HHHHHHHH
Confidence            47999999999999999998889987 68888753211   466899998 7999999999944322     22345678


Q ss_pred             CCcEEEEeCCCcccCH---HHHHHHHHhCCce
Q 042102          227 PKGVLINIGRGLLVDE---HELVSALLQGRLG  255 (317)
Q Consensus       227 ~gavlVN~~rg~~vd~---~aL~~al~~g~i~  255 (317)
                      .|..+|+.+.+..-+.   +.|.++.++....
T Consensus        73 ~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           73 AGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             TTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             CCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            8999999988877666   5677777664443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.44  E-value=4.3e-07  Score=82.12  Aligned_cols=77  Identities=17%  Similarity=0.323  Sum_probs=66.6

Q ss_pred             ccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102          146 FTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA  224 (317)
Q Consensus       146 l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~  224 (317)
                      +.|+++.|||.|. +|+.+|+.|...|++|+++++.         ..++++.+++||+|+.+++.    .+++.++.   
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK---------TKDIGSMTRSSKIVVVAVGR----PGFLNREM---  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSCHHHHHHHSSEEEECSSC----TTCBCGGG---
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC---------cccHHHhhccCCEEEECCCC----CccccHhh---
Confidence            8999999999986 8999999999999999988753         25789999999999999984    34677765   


Q ss_pred             cCCCcEEEEeCCCc
Q 042102          225 LGPKGVLINIGRGL  238 (317)
Q Consensus       225 mk~gavlVN~~rg~  238 (317)
                      +|+|+++||+|.-.
T Consensus       212 vk~GavVIDvgi~~  225 (276)
T 3ngx_A          212 VTPGSVVIDVGINY  225 (276)
T ss_dssp             CCTTCEEEECCCEE
T ss_pred             ccCCcEEEEeccCc
Confidence            59999999998755

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.44  E-value=5.6e-07  Score=81.79  Aligned_cols=111  Identities=14%  Similarity=0.215  Sum_probs=82.8

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++++++.         .++++.+++||+|+.+++.    .++|.++.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  221 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM  221 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHTTCSEEEECSSC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhhcCCEEEECCCC----CCcCCHHH
Confidence            3469999999999988 69999999999999999887542         4789999999999999983    45677765


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATV  289 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~  289 (317)
                         +|+|+++||++.-.+-|          |++   .-||...+      ..+. --.+||==||...
T Consensus       222 ---vk~GavVIDVgi~~~~~----------gkl---~GDVdf~~------v~~~-a~~iTPVPGGVGp  266 (285)
T 3p2o_A          222 ---VKEGVIVVDVGINRLES----------GKI---VGDVDFEE------VSKK-SSYITPVPGGVGP  266 (285)
T ss_dssp             ---SCTTEEEEECCCEECTT----------SCE---ECSBCHHH------HTTT-EEEECCSSSSHHH
T ss_pred             ---cCCCeEEEEeccCcccC----------CCE---eccccHHH------HHhh-heEeCCCCCcCcH
Confidence               59999999998765432          554   44663211      1111 2478996666544

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.44  E-value=5.8e-07  Score=81.48  Aligned_cols=109  Identities=18%  Similarity=0.274  Sum_probs=82.3

Q ss_pred             cccccCCeEEEEecChh-HHHHHHHHhhC--CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          143 TTKFTGKSVGILGMGRI-GTAIAKRAEAF--DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      +.+++|+++.|||.|.+ |+.+|+.|...  |++|+++.++.         .++.+.+++||+|+.+++    ..++|.+
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------~~L~~~~~~ADIVI~Avg----~p~~I~~  219 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------RDLPALTRQADIVVAAVG----VAHLLTA  219 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------SCHHHHHTTCSEEEECSC----CTTCBCG
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------hHHHHHHhhCCEEEECCC----CCcccCH
Confidence            34699999999999985 99999999999  89999886543         479999999999999988    3346887


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccH
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATV  289 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~  289 (317)
                      +.   +|+|+++||+|.-.+-|          |    ..-||- .+      ..+. --.+||-=||...
T Consensus       220 ~~---vk~GavVIDVgi~r~~~----------g----lvGDVd-~~------v~~~-a~~iTPVPGGVGp  264 (281)
T 2c2x_A          220 DM---VRPGAAVIDVGVSRTDD----------G----LVGDVH-PD------VWEL-AGHVSPNPGGVGP  264 (281)
T ss_dssp             GG---SCTTCEEEECCEEEETT----------E----EEESBC-GG------GGGT-CSEEECSSSSSHH
T ss_pred             HH---cCCCcEEEEccCCCCCC----------C----ccCccc-cc------hhhh-eeeecCCCCCccH
Confidence            76   48999999999765433          3    456775 21      1111 2357887666654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.43  E-value=5.8e-07  Score=81.71  Aligned_cols=79  Identities=16%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .++.|+++.|||.|. +|+.+|..|...|++|.+..++         ..++++.+++||+|+.+++.    .++|.++. 
T Consensus       157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  222 (285)
T 3l07_A          157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---------TTDLKSHTTKADILIVAVGK----PNFITADM-  222 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCC----TTCBCGGG-
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---------chhHHHhcccCCEEEECCCC----CCCCCHHH-
Confidence            469999999999998 6999999999999999988653         24789999999999999983    45677765 


Q ss_pred             hccCCCcEEEEeCCCc
Q 042102          223 NALGPKGVLINIGRGL  238 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~  238 (317)
                        +|+|+++||++.-.
T Consensus       223 --vk~GavVIDvgi~~  236 (285)
T 3l07_A          223 --VKEGAVVIDVGINH  236 (285)
T ss_dssp             --SCTTCEEEECCCEE
T ss_pred             --cCCCcEEEEecccC
Confidence              59999999998755

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.42  E-value=4.5e-07  Score=82.99  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHH--HhcccCCEEEEeccCChhhhccccHH
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLI--DLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~--el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      .++.|+++.|||.|. +|+.+|..|...|++|+++++..         .+++  +.+++||+|+.+++.    .++|.++
T Consensus       161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T---------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~  227 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT---------STEDMIDYLRTADIVIAAMGQ----PGYVKGE  227 (300)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS---------CHHHHHHHHHTCSEEEECSCC----TTCBCGG
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC---------CCchhhhhhccCCEEEECCCC----CCCCcHH
Confidence            468999999999988 79999999999999999987632         2566  999999999999994    3567776


Q ss_pred             HHhccCCCcEEEEeCCCccc
Q 042102          221 VINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~v  240 (317)
                      .   +|+|+++||++.-.+-
T Consensus       228 ~---vk~GavVIDvgi~~~~  244 (300)
T 4a26_A          228 W---IKEGAAVVDVGTTPVP  244 (300)
T ss_dssp             G---SCTTCEEEECCCEEES
T ss_pred             h---cCCCcEEEEEeccCCc
Confidence            5   5999999999875543

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.42  E-value=7.8e-07  Score=80.85  Aligned_cols=81  Identities=19%  Similarity=0.307  Sum_probs=68.3

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.|+++.|||.|. +|+.+|..|...|++|+++.+..         .++++.+++||+|+.+++.    .++|.++.
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  222 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------RDLADHVSRADLVVVAAGK----PGLVKGEW  222 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHHTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------cCHHHHhccCCEEEECCCC----CCCCCHHH
Confidence            3468999999999987 79999999999999999886532         3789999999999999983    45677765


Q ss_pred             HhccCCCcEEEEeCCCcc
Q 042102          222 INALGPKGVLINIGRGLL  239 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~  239 (317)
                         +|+|+++||++.-.+
T Consensus       223 ---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          223 ---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             ---SCTTCEEEECCSCSS
T ss_pred             ---cCCCeEEEEeccccc
Confidence               499999999987654

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.42  E-value=6e-07  Score=87.94  Aligned_cols=102  Identities=7%  Similarity=0.117  Sum_probs=74.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--CCEEEEeCCCCCCC------------CC------------ccccCCHHHhcccCCE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--DCIIGYNSRTEKPN------------LN------------YKYYPNLIDLASNCQI  202 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~------------~~------------~~~~~~l~el~~~aDv  202 (317)
                      ++|+|||+|.||..+|..|...  |.+|.++|++++..            .+            .....++.+.++.||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999876  78999999864321            00            1223466788899999


Q ss_pred             EEEeccCChh--------------hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          203 LVVACSLTEE--------------TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       203 V~~~lp~~~~--------------t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      |++|+|....              +...+ +...+.+++|.++|+.|.-.+-..+.+.+.+++
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999886432              22222 445667999999999886555555667777776

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.42  E-value=8.9e-07  Score=78.44  Aligned_cols=70  Identities=11%  Similarity=0.149  Sum_probs=57.7

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP  227 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~  227 (317)
                      .++|||||+|.||.++|+.|+..|.+|.+|++.             ++ ++.||  ++++|.. .+..++ ++....+++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~l~~   67 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAFARR   67 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTTCCT
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHhcCC
Confidence            368999999999999999999999999999872             22 57899  8889976 555555 455667899


Q ss_pred             CcEEEEeC
Q 042102          228 KGVLINIG  235 (317)
Q Consensus       228 gavlVN~~  235 (317)
                      |+++|+++
T Consensus        68 g~ivvd~s   75 (232)
T 3dfu_A           68 GQMFLHTS   75 (232)
T ss_dssp             TCEEEECC
T ss_pred             CCEEEEEC
Confidence            99999975

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.41  E-value=8.7e-07  Score=81.09  Aligned_cols=135  Identities=16%  Similarity=0.190  Sum_probs=90.3

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|+++++.         ..++.+.+++||+|+.+++.    .++|.++.
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~  226 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---------TAHLDEEVNKGDILVVATGQ----PEMVKGEW  226 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---------cccHHHHhccCCEEEECCCC----cccCCHHH
Confidence            3469999999999996 6999999999999999988643         24799999999999999885    34688776


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhC-CceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQG-RLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVV  300 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g-~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~  300 (317)
                         +|+|+++||+|.-.+-|..     -.+| ++.   =||-..      ...+. --.+||-=||...-...-+.+.++
T Consensus       227 ---vk~GavVIDVgi~~~~d~~-----~~~g~klv---GDVdf~------~v~~~-a~~iTPVPGGVGpmTiamLl~Ntv  288 (301)
T 1a4i_A          227 ---IKPGAIVIDCGINYVPDDK-----KPNGRKVV---GDVAYD------EAKER-ASFITPVPGGVGPMTVAMLMQSTV  288 (301)
T ss_dssp             ---SCTTCEEEECCCBC---------------CCB---CSBCHH------HHTTT-CSEECCSSSSHHHHHHHHHHHHHH
T ss_pred             ---cCCCcEEEEccCCCccccc-----ccCCCeee---ccccHH------Hhhhh-ceEeCCCCCCccHHHHHHHHHHHH
Confidence               4899999999986643321     1233 443   365321      11111 236899777766544444444444


Q ss_pred             HHHHHHHC
Q 042102          301 GNLQAHFG  308 (317)
Q Consensus       301 ~nl~~~~~  308 (317)
                      +..++++.
T Consensus       289 ~aa~~~~~  296 (301)
T 1a4i_A          289 ESAKRFLE  296 (301)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            44444443

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.38  E-value=1.1e-06  Score=83.98  Aligned_cols=101  Identities=9%  Similarity=0.076  Sum_probs=74.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CC------------------ccccCCHHHhcccCCEEEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LN------------------YKYYPNLIDLASNCQILVV  205 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~------------------~~~~~~l~el~~~aDvV~~  205 (317)
                      ++|+|||+|.||..+|..|.. |.+|.++|+++...     .+                  .....++.+.++.||+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            479999999999999999998 99999999875321     11                  1223467788899999999


Q ss_pred             eccCCh----------hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          206 ACSLTE----------ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       206 ~lp~~~----------~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      ++|...          .+...+ +...+ +++|+++|+.+.-.+-..+.+.+.+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999763          234333 34455 8999999997776665566777766554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.38  E-value=6.7e-07  Score=91.63  Aligned_cols=135  Identities=17%  Similarity=0.121  Sum_probs=87.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~  199 (317)
                      ++|||||+|.||..+|..+...|++|+++|+++....                +             .....++ +.+++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  393 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN  393 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence            5799999999999999999999999999998754211                1             0112345 67899


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceE
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVV  279 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi  279 (317)
                      ||+|+.++|.+.+...-+-++..+.++++++++..+.+  +....+.+.+. ..-...++..|.  |.     ...+.+.
T Consensus       394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~-~~~~~ig~hf~~--P~-----~~~~lve  463 (715)
T 1wdk_A          394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALK-RPENFVGMHFFN--PV-----HMMPLVE  463 (715)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCS-CGGGEEEEECCS--ST-----TTCCEEE
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhc-CccceEEEEccC--Cc-----ccCceEE
Confidence            99999999988776554445566778999999754433  33345555442 222234556554  22     2344566


Q ss_pred             EcccCCCccHHHHHHH
Q 042102          280 LLPHVASATVETRKAM  295 (317)
Q Consensus       280 ~tPH~a~~t~~~~~~~  295 (317)
                      +.|+-. .+.+..+.+
T Consensus       464 vv~g~~-t~~e~~~~~  478 (715)
T 1wdk_A          464 VIRGEK-SSDLAVATT  478 (715)
T ss_dssp             EEECSS-CCHHHHHHH
T ss_pred             EEECCC-CCHHHHHHH
Confidence            666422 244444443

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.38  E-value=5.1e-07  Score=83.64  Aligned_cols=89  Identities=12%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             ccccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCC------CCC--cc-c-----c--CCHHHhcccCCEEE
Q 042102          142 MTTKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKP------NLN--YK-Y-----Y--PNLIDLASNCQILV  204 (317)
Q Consensus       142 ~~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~------~~~--~~-~-----~--~~l~el~~~aDvV~  204 (317)
                      ++.++.|+++.|||.|.| |+.+|+.|.+.|++|.+++|+...      ...  .. .     .  .++.+.+++||+|+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI  250 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  250 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence            455799999999999975 999999999999999999886211      000  11 1     1  46889999999999


Q ss_pred             EeccCChhhhcc-ccHHHHhccCCCcEEEEeCCC
Q 042102          205 VACSLTEETQHI-VNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       205 ~~lp~~~~t~~l-i~~~~l~~mk~gavlVN~~rg  237 (317)
                      .+++.    .++ |.++.   +|+|+++||+|..
T Consensus       251 sAtg~----p~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          251 TGVPS----ENYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             ECCCC----TTCCBCTTT---SCTTEEEEECSSS
T ss_pred             ECCCC----CcceeCHHH---cCCCeEEEEcCCC
Confidence            99884    234 77766   4899999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.37  E-value=1.8e-07  Score=81.00  Aligned_cols=112  Identities=19%  Similarity=0.190  Sum_probs=79.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCC------C------ccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------N------YKYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~------~~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      ++|+|+| .|.||+.+++.|...|++|.+++|+++...      +      .....+++++++++|+|++++|. ..+..
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~-~~~~~   79 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW-EHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH-HHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCCh-hhHHH
Confidence            4799999 999999999999999999999998753210      1      01124677889999999999993 33444


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccC------------HHHHHHHHHhCCceEEEeeCCCCCCC
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVD------------EHELVSALLQGRLGGAGLDVFEHEPD  267 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd------------~~aL~~al~~g~i~ga~lDV~~~EP~  267 (317)
                      ++. +..+.++ +.++|+++.|--.+            .+.+.+.+..  .  ..++++.+.|.
T Consensus        80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~--~--~~v~~~~~~~~  137 (212)
T 1jay_A           80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES--E--KVVSALHTIPA  137 (212)
T ss_dssp             HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC--S--CEEECCTTCCH
T ss_pred             HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC--C--eEEEEccchHH
Confidence            442 3334454 89999999876532            4667666653  2  35677777663

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.36  E-value=5.5e-07  Score=83.98  Aligned_cols=100  Identities=12%  Similarity=0.093  Sum_probs=73.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C-Cc--------------cccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L-NY--------------KYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~-~~--------------~~~~~l~el~~~aDvV~~~lp  208 (317)
                      ++|+|||+|.||+.+|..|...|.+|.++++++...     . +.              ....+++++++.+|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            689999999999999999999999999999874321     0 10              134578888899999999999


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      .... ..++ +...+.+++++++|++ .|.......+.+.+.+
T Consensus        85 ~~~~-~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIHH-ASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGGH-HHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chHH-HHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            6654 4444 4556678999999998 4422334445555554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.35  E-value=4e-07  Score=79.78  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=61.5

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEE-eCCCCCCCC------CccccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGY-NSRTEKPNL------NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      -++|||||+|.||+.+|+.|...|.+|.+ ++|+++...      +.....+..+.++++|+|++++|.. ....++.+ 
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~~-  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SIADIVTQ-  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GHHHHHTT-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HHHHHHHH-
Confidence            36899999999999999999999999988 998765431      2222234556689999999999832 22322221 


Q ss_pred             HHhccCCCcEEEEeCCCc
Q 042102          221 VINALGPKGVLINIGRGL  238 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~  238 (317)
                       +.. .++.++|+++-|-
T Consensus       101 -l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A          101 -VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             -CSC-CTTCEEEECCCCB
T ss_pred             -hhc-cCCCEEEEcCCCC
Confidence             112 3588999998654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.35  E-value=6.3e-07  Score=83.71  Aligned_cols=90  Identities=23%  Similarity=0.240  Sum_probs=68.2

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCC-------CEEEEeCCCCC-----CCC-------------------CccccCCHHHh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFD-------CIIGYNSRTEK-----PNL-------------------NYKYYPNLIDL  196 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~el  196 (317)
                      .++|+|||+|.||..+|..|...|       .+|.+|++++.     ...                   ......+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            358999999999999999998888       89999998765     110                   01123567888


Q ss_pred             cccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102          197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       197 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      ++.||+|++++|. ..+..++ ++....+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            8999999999995 3444444 344456788999999988754

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.35  E-value=8e-07  Score=80.91  Aligned_cols=106  Identities=14%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCCcc------ccCCHHHhcccCCEEEEeccCC--hhhhc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYK------YYPNLIDLASNCQILVVACSLT--EETQH  215 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~------~~~~l~el~~~aDvV~~~lp~~--~~t~~  215 (317)
                      ++.|+++.|+|.|.+|++++..|...|+ +|.+++|+..+.....      ...++.++++++|+|+.++|..  +....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            4789999999999999999999999999 8999999875432111      1234667788999999999964  22222


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .+.   .+.++++.+++|+...+. .+ .|+++.++..+.
T Consensus       194 ~l~---~~~l~~~~~V~D~vY~P~-~T-~ll~~A~~~G~~  228 (277)
T 3don_A          194 VIS---LNRLASHTLVSDIVYNPY-KT-PILIEAEQRGNP  228 (277)
T ss_dssp             SSC---CTTCCSSCEEEESCCSSS-SC-HHHHHHHHTTCC
T ss_pred             CCC---HHHcCCCCEEEEecCCCC-CC-HHHHHHHHCcCE
Confidence            232   356789999999987643 34 465555555444

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.34  E-value=1.3e-06  Score=85.17  Aligned_cols=111  Identities=17%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC---------------------------ccccCCHHHhcccC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN---------------------------YKYYPNLIDLASNC  200 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---------------------------~~~~~~l~el~~~a  200 (317)
                      -++|||||+|.||..+|..+...|++|.++|+++.....                           .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            358999999999999999999999999999987532100                           0112455 568899


Q ss_pred             CEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102          201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF  262 (317)
Q Consensus       201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~  262 (317)
                      |+|+.++|.+.+...-+-++..+.+++++++++... + +....+.+.+.. .-...+...|
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs-~-~~~~~la~~~~~-~~~~ig~hf~  174 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS-A-LNVDDIASSTDR-PQLVIGTHFF  174 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS-S-SCHHHHHTTSSC-GGGEEEEEEC
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCC-C-cCHHHHHHHhcC-CcceEEeecC
Confidence            999999997655443333455567899999987333 3 233466655532 2223455555

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.33  E-value=1.1e-06  Score=86.09  Aligned_cols=102  Identities=8%  Similarity=0.079  Sum_probs=73.0

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------------CC-------------ccccCCHHHhcccCCE
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------------LN-------------YKYYPNLIDLASNCQI  202 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~el~~~aDv  202 (317)
                      .++|+|||+|.||..+|..|...|.+|++||++++..            .+             .....++++.++.||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            3699999999999999999999999999999864321            11             1233567788899999


Q ss_pred             EEEeccCC---------hhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          203 LVVACSLT---------EETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       203 V~~~lp~~---------~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      |++|+|..         ..++..+ +...+.+++|+++|+.+.-.+=..+.+.+.+.
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~  143 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA  143 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence            99999863         3344333 44556789999999998433333344444444

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.33  E-value=6.2e-07  Score=80.98  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=65.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------Cc----cccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------NY----KYYPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~----~~~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      ++|+|||+|.||..+|..|...|.+|.+++|++....        +.    ....+..+.++.+|+|++++|... +..+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~-~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ-VSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG-HHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHh-HHHH
Confidence            4799999999999999999999999999998765321        10    001122467789999999999764 4544


Q ss_pred             ccHHHHhccCCCcEEEEeCCCc
Q 042102          217 VNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg~  238 (317)
                      + ++..+.+++++++|++..|-
T Consensus        80 ~-~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           80 V-KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             H-HHHHTTSCTTSCEEEECSSS
T ss_pred             H-HHHHhhCCCCCEEEEecCCC
Confidence            4 34556788899999986653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.33  E-value=1.2e-06  Score=85.68  Aligned_cols=98  Identities=17%  Similarity=0.155  Sum_probs=72.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CC-EEEEeCCCCC----CC----C----------------------C-ccccCCHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DC-IIGYNSRTEK----PN----L----------------------N-YKYYPNLID  195 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~-~V~~~~~~~~----~~----~----------------------~-~~~~~~l~e  195 (317)
                      ++|+|||+|.+|..+|..|... |. +|++||+++.    ..    .                      + .....+ .+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e   97 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS   97 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence            5899999999999999999999 99 9999998876    21    0                      0 011234 57


Q ss_pred             hcccCCEEEEeccCCh--------hhhccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHH
Q 042102          196 LASNCQILVVACSLTE--------ETQHIV--NRQVINALGPKGVLINIGRGLLVDEHELVS  247 (317)
Q Consensus       196 l~~~aDvV~~~lp~~~--------~t~~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~  247 (317)
                      .+++||+|++++|...        ++..+.  .+...+.+++|.++|+.|.-++--.+.+.+
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            7899999999999653        222222  245667899999999999766655555654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.30  E-value=4.9e-07  Score=85.45  Aligned_cols=88  Identities=16%  Similarity=0.220  Sum_probs=66.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC-------CEEEEeCCCCC-----CCC-------------------CccccCCHHHhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD-------CIIGYNSRTEK-----PNL-------------------NYKYYPNLIDLA  197 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~el~  197 (317)
                      ++|+|||.|.||..+|..|...|       .+|.+|++++.     ...                   +.....++.+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998778       89999998765     110                   112235677888


Q ss_pred             ccCCEEEEeccCChhhhccccHHHHh----ccCCCcEEEEeCCCc
Q 042102          198 SNCQILVVACSLTEETQHIVNRQVIN----ALGPKGVLINIGRGL  238 (317)
Q Consensus       198 ~~aDvV~~~lp~~~~t~~li~~~~l~----~mk~gavlVN~~rg~  238 (317)
                      +.||+|++++|. ..++.++. +...    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCcc
Confidence            999999999994 45555442 3344    678899999998773

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.29  E-value=6.5e-07  Score=82.72  Aligned_cols=100  Identities=13%  Similarity=0.092  Sum_probs=71.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCC--CCCCC-----CCc-----------cccC--CHHHhcccCCEEEEecc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSR--TEKPN-----LNY-----------KYYP--NLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~--~~~~~-----~~~-----------~~~~--~l~el~~~aDvV~~~lp  208 (317)
                      ++|+|||+|.||+.+|..|...|.+|.++++  ++...     .+.           ....  ++.+.++.+|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4799999999999999999988999999998  54321     110           1233  67788899999999999


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeCCCc---cc-CHHHHHHHHHh
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIGRGL---LV-DEHELVSALLQ  251 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg~---~v-d~~aL~~al~~  251 (317)
                      .. .+..++ +.... ++++.++|+++.|-   -. ..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            65 444444 34455 78899999998775   11 22345555544

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.27  E-value=1.7e-06  Score=83.54  Aligned_cols=104  Identities=11%  Similarity=0.137  Sum_probs=73.3

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CC--ccccCCHHHh---------------cccCCEEE
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LN--YKYYPNLIDL---------------ASNCQILV  204 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~--~~~~~~l~el---------------~~~aDvV~  204 (317)
                      -+|.++.|||+|.+|..+|..|...|++|++||+++++.    .+  ......++++               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            468899999999999999999999999999999876431    11  1112233332               45799999


Q ss_pred             EeccCChhhh--------ccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          205 VACSLTEETQ--------HIV--NRQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       205 ~~lp~~~~t~--------~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      +|+|......        .+.  .+...+.|++|.++|+.|.-++--.+.+.+.+
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i  143 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV  143 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence            9999655221        222  24566779999999999977766666776654

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.27  E-value=8.7e-07  Score=83.52  Aligned_cols=92  Identities=17%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------------CC------ccccCCHHHhcccCCEEEEecc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------------LN------YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~~------~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .++|+|||.|.+|..+|..|...|.+|.+|+++++..             .+      .....++++.++.||+|++++|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            4689999999999999999999999999999874321             00      1224678899999999999999


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      .. .++.++ ++....+++++++|++..|-..+
T Consensus       109 ~~-~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          109 SF-AFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             HH-HHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             HH-HHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            43 444444 45556788999999998876554

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.26  E-value=2.1e-07  Score=87.56  Aligned_cols=90  Identities=12%  Similarity=0.117  Sum_probs=67.8

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C--------------CccccCCHHHhcccCCEEEEeccCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L--------------NYKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~--------------~~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      +|+|||+|.||..+|..|...|.+|.+|++++...     .              ......++.++++.+|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            89999999999999999999999999999875321     0              112235788889999999999994 


Q ss_pred             hhhhccccHH---HHhccCC-CcEEEEeCCCccc
Q 042102          211 EETQHIVNRQ---VINALGP-KGVLINIGRGLLV  240 (317)
Q Consensus       211 ~~t~~li~~~---~l~~mk~-gavlVN~~rg~~v  240 (317)
                      ..+..++...   ....+++ ++++|+++.|-..
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4555555321   4455778 9999999876433

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.26  E-value=1.7e-06  Score=88.82  Aligned_cols=135  Identities=13%  Similarity=0.080  Sum_probs=85.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CC-------------ccccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LN-------------YKYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~el~~~  199 (317)
                      ++|||||.|.||..+|..+...|++|.++|+++...                .+             .....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            579999999999999999999999999999875321                01             0122345 57899


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceE
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVV  279 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi  279 (317)
                      ||+|+.++|.+.+...-+-++..+.++++++++..+.+  +....+.+.+.. .-...++..|.  |.     ..+|.+.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~--P~-----~~~~lve  461 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFS--PA-----HIMPLLE  461 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECS--ST-----TTCCEEE
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCC--Cc-----ccCceEE
Confidence            99999999988765544445566778999998654333  333445544422 11224555554  22     2345566


Q ss_pred             EcccCCCccHHHHHHH
Q 042102          280 LLPHVASATVETRKAM  295 (317)
Q Consensus       280 ~tPH~a~~t~~~~~~~  295 (317)
                      +.|+-. .+.+..+++
T Consensus       462 vv~g~~-t~~e~~~~~  476 (725)
T 2wtb_A          462 IVRTNH-TSAQVIVDL  476 (725)
T ss_dssp             EEECSS-CCHHHHHHH
T ss_pred             EEECCC-CCHHHHHHH
Confidence            666422 244444443

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.24  E-value=6.7e-07  Score=81.64  Aligned_cols=104  Identities=9%  Similarity=0.074  Sum_probs=71.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc------------cCCHHHhcc---cCCEEEEecc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY------------YPNLIDLAS---NCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~------------~~~l~el~~---~aDvV~~~lp  208 (317)
                      ++|+|||+|.||+.+|..|...|.+|.++++++...     .+...            ..+..++.+   .+|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            589999999999999999999999999999865321     01100            013334444   8999999999


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .. .+..++ +...+.+++++++|+++.|- -..+.+.+.+.+.++.
T Consensus        84 ~~-~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 AQ-QLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             HH-HHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             cc-cHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            43 445444 34556688999999997653 2345566666554443

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.24  E-value=1.7e-06  Score=79.54  Aligned_cols=106  Identities=13%  Similarity=0.141  Sum_probs=75.5

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------Cc---cc--cCCHHHhcccCCEEEEeccCChh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------NY---KY--YPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~---~~--~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      .+.|++++|+|.|.+|+.++..|...|+ +|.+++|+..+..      +.   ..  ..++.+.+.++|+|+.++|....
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            4778999999999999999999999998 9999999854321      11   11  12466778999999999997542


Q ss_pred             h--hc-cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          213 T--QH-IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       213 t--~~-li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .  .. .+.   .+.++++.+++|++-. .... .|.+..++..+.
T Consensus       218 ~~~~~~~i~---~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~  258 (297)
T 2egg_A          218 PRVEVQPLS---LERLRPGVIVSDIIYN-PLET-KWLKEAKARGAR  258 (297)
T ss_dssp             SCCSCCSSC---CTTCCTTCEEEECCCS-SSSC-HHHHHHHHTTCE
T ss_pred             CCCCCCCCC---HHHcCCCCEEEEcCCC-CCCC-HHHHHHHHCcCE
Confidence            1  11 133   2457899999999885 3334 366666665554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.21  E-value=1.9e-06  Score=77.36  Aligned_cols=99  Identities=17%  Similarity=0.089  Sum_probs=73.7

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC----c--cccCCHHHhcccCCEEEEeccCC--hhhhcc
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN----Y--KYYPNLIDLASNCQILVVACSLT--EETQHI  216 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~----~--~~~~~l~el~~~aDvV~~~lp~~--~~t~~l  216 (317)
                      +.| +++|+|.|.+|++++..|...|+ +|.+++|+.++...    .  ....++.+.++++|+|++++|..  ++ ...
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~~~  184 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-ELP  184 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-CCS
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-CCC
Confidence            578 99999999999999999999999 89999998653211    1  12456778899999999999864  22 123


Q ss_pred             ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      +..+.   ++++.+++++.-+   ..+-+.++.+.|
T Consensus       185 i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          185 VSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            44433   5789999999888   455555666555

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.21  E-value=9.4e-07  Score=82.18  Aligned_cols=83  Identities=18%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CC-----------ccccCCHHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LN-----------YKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~-----------~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      .+|+|||+|.||..+|..|...|.+|.+|+|++...     .+           .....++.+ ++.+|+|++++|. ..
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~~   92 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-QY   92 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-GG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-HH
Confidence            589999999999999999999999999999874321     11           233456778 8899999999994 55


Q ss_pred             hhccccHHHHhccC-CCcEEEEeCCCc
Q 042102          213 TQHIVNRQVINALG-PKGVLINIGRGL  238 (317)
Q Consensus       213 t~~li~~~~l~~mk-~gavlVN~~rg~  238 (317)
                      ++.++     ..++ ++.++|+++.|-
T Consensus        93 ~~~v~-----~~l~~~~~~vv~~~nGi  114 (335)
T 1z82_A           93 IREHL-----LRLPVKPSMVLNLSKGI  114 (335)
T ss_dssp             HHHHH-----TTCSSCCSEEEECCCCC
T ss_pred             HHHHH-----HHhCcCCCEEEEEeCCC
Confidence            55443     3344 789999998763

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.11  E-value=2.8e-06  Score=76.91  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=71.7

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCcc----ccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK----YYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~----~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      |+++.|+|.|.+|++++..|...|.+|.+++|+.++.....    ...+++++ +++|+|+.++|..-.....+..+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEcccCCCCCCCCCChHHHH
Confidence            78999999999999999999999999999999876531110    01122333 38999999999753322245555333


Q ss_pred             -ccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          224 -ALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       224 -~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                       .++++.+++|+...+  ... |+++.++..+.
T Consensus       197 ~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G~~  226 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF--LTP-FLSLAKELKTP  226 (269)
T ss_dssp             HHHHHCSEEEESCCSS--CCH-HHHHHHHTTCC
T ss_pred             hhCCCCCEEEEeCCCC--chH-HHHHHHHCcCE
Confidence             577889999998875  444 55544444443

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.09  E-value=2.8e-06  Score=80.69  Aligned_cols=83  Identities=16%  Similarity=0.167  Sum_probs=69.6

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCC---EEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDC---IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      ...+|.|||. |.+|+..++.++++|+   .|.++|++.... +..    + +.++++|+|+.++......-.+|.++.+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-g~~----~-~~i~~aDivIn~vlig~~aP~Lvt~e~v  286 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-GGP----F-DEIPQADIFINCIYLSKPIAPFTNMEKL  286 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-CSC----C-THHHHSSEEEECCCCCSSCCCSCCHHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-CCc----h-hhHhhCCEEEECcCcCCCCCcccCHHHH
Confidence            4668999999 9999999999999998   899999765221 111    1 3466999999999987767789999999


Q ss_pred             hcc-CCCcEEEEeC
Q 042102          223 NAL-GPKGVLINIG  235 (317)
Q Consensus       223 ~~m-k~gavlVN~~  235 (317)
                      +.| |||+++||++
T Consensus       287 ~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          287 NNPNRRLRTVVDVS  300 (394)
T ss_dssp             CCTTCCCCEEEETT
T ss_pred             hcCcCCCeEEEEEe
Confidence            999 9999999996

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.05  E-value=1.5e-05  Score=64.98  Aligned_cols=102  Identities=18%  Similarity=0.178  Sum_probs=75.2

Q ss_pred             cCCeEEEEec----ChhHHHHHHHHhhCCCEEEEeCCC--CCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102          147 TGKSVGILGM----GRIGTAIAKRAEAFDCIIGYNSRT--EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       147 ~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      +-++|+|||.    |.+|..+++.++..|++|+..++.  .....+...+.+++|+-...|++++++|. +....++. +
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~-~   89 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP-E   89 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH-H
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH-H
Confidence            4679999999    899999999999999997777665  33334555677899998899999999997 55666663 3


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ..+ ...++++++.+..    ++.+.+..++..++
T Consensus        90 ~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           90 VLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             HHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             HHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            333 3345666654332    57788888887776

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.01  E-value=1.8e-05  Score=74.81  Aligned_cols=92  Identities=16%  Similarity=0.185  Sum_probs=74.3

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC----CCCC---C------------CccccCCHHHhcccCCE
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT----EKPN---L------------NYKYYPNLIDLASNCQI  202 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~----~~~~---~------------~~~~~~~l~el~~~aDv  202 (317)
                      +..+.+.+|.|+|.|.+|..+|+.|.+.|. +|+.+|++    ....   .            ......+|.|.++++|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            346888999999999999999999999999 79999987    3221   0            01123569999999999


Q ss_pred             EEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102          203 LVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       203 V~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      ++-+..     .++|.++.++.|+++++++.+|+...
T Consensus       267 lIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          267 FIGVSR-----GNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             EEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             EEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            887732     38999999999999999999997543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.00  E-value=2.6e-05  Score=63.84  Aligned_cols=104  Identities=18%  Similarity=0.165  Sum_probs=75.7

Q ss_pred             ccc-CCeEEEEec----ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          145 KFT-GKSVGILGM----GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       145 ~l~-g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      -+. .++|+|||.    |.+|..+++.|+..|++|+..++......+...+.+++++....|++++++|. +....++. 
T Consensus        18 ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~-   95 (144)
T 2d59_A           18 ILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-   95 (144)
T ss_dssp             HHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-
T ss_pred             HHcCCCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-
Confidence            354 689999999    79999999999999999777776543334555677899998899999999996 44555553 


Q ss_pred             HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +..+ ...++++++.  |.  .++.+.+.+++..+.
T Consensus        96 ~~~~-~gi~~i~~~~--g~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A           96 QAIK-KGAKVVWFQY--NT--YNREASKKADEAGLI  126 (144)
T ss_dssp             HHHH-HTCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             HHHH-cCCCEEEECC--Cc--hHHHHHHHHHHcCCE
Confidence            3333 3344666553  32  367888888887776

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.97  E-value=2.4e-05  Score=64.28  Aligned_cols=95  Identities=15%  Similarity=0.057  Sum_probs=61.8

Q ss_pred             ccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccc----cCC---HHHh-cccCCEEEEec
Q 042102          142 MTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKY----YPN---LIDL-ASNCQILVVAC  207 (317)
Q Consensus       142 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~----~~~---l~el-~~~aDvV~~~l  207 (317)
                      ++....+++|.|+|+|.+|+.+++.|+..|.+|.++++++...      .+...    ..+   +.+. +..+|+|++++
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~   92 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT   92 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence            4556788999999999999999999999999999998865432      11111    112   3333 67899999999


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      |....+..  -....+.+.+...+|-..++.
T Consensus        93 ~~~~~~~~--~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           93 NDDSTNFF--ISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             SCHHHHHH--HHHHHHHTSCCSEEEEECSSG
T ss_pred             CCcHHHHH--HHHHHHHHCCCCeEEEEECCH
Confidence            86543332  223444445556666665554

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.96  E-value=1.2e-06  Score=79.36  Aligned_cols=82  Identities=16%  Similarity=0.047  Sum_probs=54.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEE-EEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCII-GYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V-~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      ++|||||+|.||+.+++.|... ++| .++++++...      .+. ...++++++++||+|++++|... .     .+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~-----~~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-I-----KTV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-H-----HHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-H-----HHH
Confidence            4799999999999999999877 888 5888875431      122 34567788889999999999654 2     233


Q ss_pred             Hhcc-CCCcEEEEeCCCc
Q 042102          222 INAL-GPKGVLINIGRGL  238 (317)
Q Consensus       222 l~~m-k~gavlVN~~rg~  238 (317)
                      +..+ +++.++||++-+-
T Consensus        75 ~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             HTTTCCSSCCEEECCSSS
T ss_pred             HHHhccCCCEEEECCCCC
Confidence            3334 6889999998553

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.95  E-value=3.4e-05  Score=71.33  Aligned_cols=83  Identities=22%  Similarity=0.266  Sum_probs=64.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC---------Cc--cccCCHHHhcccCCEEEEeccCChhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL---------NY--KYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~~--~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      ..++++|||.|.+|+.+++.+.. ++. +|.+|+|+ +...         +.  ... ++++++++||+|++|+|..   
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---  194 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---  194 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---
Confidence            35799999999999999999875 454 79999998 4310         11  224 8999999999999999864   


Q ss_pred             hccccHHHHhccCCCcEEEEeCCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ..++..   +.+|+|+.++++|..
T Consensus       195 ~pvl~~---~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          195 TPLFAG---QALRAGAFVGAIGSS  215 (313)
T ss_dssp             SCSSCG---GGCCTTCEEEECCCS
T ss_pred             CcccCH---HHcCCCcEEEECCCC
Confidence            345654   357999999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.94  E-value=3.9e-06  Score=70.86  Aligned_cols=90  Identities=20%  Similarity=0.177  Sum_probs=63.6

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhC-CCEEEEeCCCCCCC-----CCccc----cCC---HHHh--cccCCEEEEecc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAF-DCIIGYNSRTEKPN-----LNYKY----YPN---LIDL--ASNCQILVVACS  208 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~-----~~~~~----~~~---l~el--~~~aDvV~~~lp  208 (317)
                      .++.+++|+|+|+|.+|+.+++.|+.. |++|.++++++...     .+...    ..+   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            457788999999999999999999998 99999999875431     12211    122   3444  678999999999


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeC
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ..+.+..++  ..++.+.++..+|...
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEE
Confidence            766554433  3455666666666543

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.92  E-value=6.6e-06  Score=78.69  Aligned_cols=91  Identities=19%  Similarity=0.254  Sum_probs=70.1

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC---C--C------CCCccccCCHHHhcccCCEEEEeccCChh
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE---K--P------NLNYKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~---~--~------~~~~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      .-|+||||+|||+|.-|++=|..|+..|.+|.+--|..   .  +      ..+. ...+..|+++.||+|.+.+|+..+
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf-~v~~~~eA~~~ADvV~~L~PD~~q  111 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDKQH  111 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTC-EEEEHHHHGGGCSEEEECSCGGGH
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCC-EecCHHHHHHhCCEEEEeCChhhH
Confidence            45899999999999999999999999999987654411   0  0      1222 235789999999999999997655


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCc
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      .. +. ++..+.||+|+.+. .++|=
T Consensus       112 ~~-vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          112 SD-VV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             HH-HH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             HH-HH-HHHHhhCCCCCEEE-ecCcc
Confidence            44 44 46889999999976 56664

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.88  E-value=2.2e-05  Score=73.73  Aligned_cols=87  Identities=11%  Similarity=0.124  Sum_probs=65.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCC-------C---C--ccccCCHHHhcccCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPN-------L---N--YKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~-------~---~--~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      .++++||||.|.+|+.+++.+. ..+. +|.+|+|++...       .   +  .....++++++++||+|++++|... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence            4579999999999999998874 3454 799999975431       0   2  2235689999999999999999762 


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ...++..   +.+++|..++++|..
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCceecH---HHcCCCCEEEECCCC
Confidence            3345554   457899999999863

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.82  E-value=5e-05  Score=70.05  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=73.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---CC---------------ccccCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---LN---------------YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~---------------~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....   .+               .....+++++.+.+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~   82 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVV   82 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCC
Confidence            589999999999999999999999999999865210   00               011245667767899999999966


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      . +...+ +..-..+++++++|.+.-|= -.++.+.+.+...++.
T Consensus        83 ~-~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           83 E-GADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             T-TCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEE
T ss_pred             C-hHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEE
Confidence            4 23333 33445678889999987762 2346677777655554

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.80  E-value=5.1e-05  Score=73.25  Aligned_cols=133  Identities=13%  Similarity=0.117  Sum_probs=81.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------------CCC-------------ccccCCHHHhcccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------------NLN-------------YKYYPNLIDLASNCQ  201 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------------~~~-------------~~~~~~l~el~~~aD  201 (317)
                      +-.+|+|||+|.+|..+|..+...|++|+++|.++++            +.+             ..+..+.++.++.||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            3468999999999999999999999999999976432            011             113457788899999


Q ss_pred             EEEEeccCChhhhcccc--------HHHHhcc---CCCcEEEEeCCCcccCHHHHH-HHHHhCCceEEEee-CCCCCCCC
Q 042102          202 ILVVACSLTEETQHIVN--------RQVINAL---GPKGVLINIGRGLLVDEHELV-SALLQGRLGGAGLD-VFEHEPDV  268 (317)
Q Consensus       202 vV~~~lp~~~~t~~li~--------~~~l~~m---k~gavlVN~~rg~~vd~~aL~-~al~~g~i~ga~lD-V~~~EP~~  268 (317)
                      ++++|+|-.....+-.|        +..-+.|   .+|.++|.-|.-.+=-.+.+. ..+++.. .+.-++ ++.+|-..
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl~  178 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFLR  178 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCCC
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCccccc
Confidence            99999874221111111        2222334   368899998875553333333 3343322 211122 24566554


Q ss_pred             Cc----ccCCCCceEE
Q 042102          269 PE----ELIGLENVVL  280 (317)
Q Consensus       269 ~~----~L~~~pnvi~  280 (317)
                      +.    .+...|++++
T Consensus       179 eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          179 EGSALEDFFKPDRIVI  194 (444)
T ss_dssp             TTSHHHHHHSCSCEEE
T ss_pred             CCccccccccCCcEEE
Confidence            42    4667777763

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.79  E-value=9.3e-06  Score=74.23  Aligned_cols=100  Identities=9%  Similarity=0.118  Sum_probs=68.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-----C-CEEEEeCCCCCCC------CCccccC-------------CHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-----D-CIIGYNSRTEKPN------LNYKYYP-------------NLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-----G-~~V~~~~~~~~~~------~~~~~~~-------------~l~el~~~aDvV  203 (317)
                      ++|+|||+|.||..+|..|...     | .+|.+++| ....      .+.....             +..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            4899999999999999999887     8 99999998 3210      1211110             223457889999


Q ss_pred             EEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCH-HHHHHHHHhCC
Q 042102          204 VVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDE-HELVSALLQGR  253 (317)
Q Consensus       204 ~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~-~aL~~al~~g~  253 (317)
                      ++++|... +..++ +.....++++.++|++.-|  +.. +.+.+.+...+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCTTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCCCc
Confidence            99999765 34443 3444557788999998776  333 45555554433

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.76  E-value=1.9e-05  Score=72.89  Aligned_cols=100  Identities=16%  Similarity=0.193  Sum_probs=67.1

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CC-------------ccccCCHHHhcccCCEEEEec
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LN-------------YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~-------------~~~~~~l~el~~~aDvV~~~l  207 (317)
                      ...++|+|||.|.||..+|..|...|.+|..+ ++++..     .+             .....++++ ++.+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            45679999999999999999999999999988 543210     00             011234544 58999999999


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL  250 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~  250 (317)
                      |.. .++.++ +..-..+++++++|.+.-|=- .++.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNGVE-NADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSSSS-HHHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCC-cHHHHHHHcC
Confidence            965 445444 334456788999999977632 2245555553

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.75  E-value=2.2e-05  Score=72.94  Aligned_cols=87  Identities=14%  Similarity=0.205  Sum_probs=63.8

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCc-------------cccCCHHHhcccCCEEEEeccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNY-------------KYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~-------------~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      .++|+|||.|.||..+|..|...|.+|.+++|.....    .+.             ....++++ ++.+|+|++++|. 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            3689999999999999999999999999999842110    111             11246666 5889999999996 


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ..+..++ +..-..+++++++|.+..|
T Consensus        81 ~~~~~~~-~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 PALESVA-AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             HHHHHHH-GGGSSSCCTTCEEEECCSS
T ss_pred             hhHHHHH-HHHHhhCCCCCEEEEECCC
Confidence            3444443 2333456789999999888

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.75  E-value=5.5e-05  Score=70.11  Aligned_cols=82  Identities=16%  Similarity=0.202  Sum_probs=63.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC-----------CccccCCHHHhcccCCEEEEeccCChhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL-----------NYKYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~-----------~~~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      ..++++|||.|.+|+.+++.+.. .+. +|.+|+|+++...           ... ..++++++ ++|+|++++|...  
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~--  199 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK--  199 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence            45699999999999999998876 444 7899999864321           123 56889999 9999999999642  


Q ss_pred             hccccHHHHhccCCCcEEEEeCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~r  236 (317)
                       .++..   +.+++|..++++|.
T Consensus       200 -pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          200 -PVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             -CCBCG---GGCCTTCEEEECSC
T ss_pred             -ceecH---HHcCCCeEEEECCC
Confidence             45543   45789999999964

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.73  E-value=9.4e-05  Score=67.55  Aligned_cols=79  Identities=18%  Similarity=0.290  Sum_probs=65.3

Q ss_pred             cccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+++ |+.+|..|...|++|+.+...         ..++.+..++||+|+.++.    ..++|..+.
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~---------T~dl~~~~~~ADIvV~A~G----~p~~i~~d~  240 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR---------TQNLPELVKQADIIVGAVG----KAELIQKDW  240 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHHTCSEEEECSC----STTCBCGGG
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC---------CCCHHHHhhcCCeEEeccC----CCCcccccc
Confidence            34699999999998865 999999999999999877542         2478999999999999876    346787765


Q ss_pred             HhccCCCcEEEEeCCC
Q 042102          222 INALGPKGVLINIGRG  237 (317)
Q Consensus       222 l~~mk~gavlVN~~rg  237 (317)
                         .|+|+++||+|--
T Consensus       241 ---vk~GavVIDVGin  253 (303)
T 4b4u_A          241 ---IKQGAVVVDAGFH  253 (303)
T ss_dssp             ---SCTTCEEEECCCB
T ss_pred             ---ccCCCEEEEecee
Confidence               5899999999853

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.72  E-value=1.9e-05  Score=63.89  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=59.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc----cCC---HHHh-cccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY----YPN---LIDL-ASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~el-~~~aDvV~~~lp~~~~t~~  215 (317)
                      .++.|+|+|.+|+.+++.|+..|++|.+++++++..     .+...    ..+   +.++ +.++|+|++++|....+..
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~   87 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE   87 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence            479999999999999999999999999999876432     12211    112   2332 5789999999997766543


Q ss_pred             cccHHHHhccCCCcEEEEe
Q 042102          216 IVNRQVINALGPKGVLINI  234 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~  234 (317)
                      ++  ..++.+.++..+|-.
T Consensus        88 ~~--~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           88 IV--ASARAKNPDIEIIAR  104 (140)
T ss_dssp             HH--HHHHHHCSSSEEEEE
T ss_pred             HH--HHHHHHCCCCeEEEE
Confidence            32  345556666666654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.69  E-value=8.8e-05  Score=68.14  Aligned_cols=105  Identities=13%  Similarity=0.158  Sum_probs=71.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---CCc--------------cccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---LNY--------------KYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~--------------~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....   .+.              ....+.++ ++.+|+|++++|...
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~~   81 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTFA   81 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCCC
Confidence            589999999999999999999999999999865210   010              01234544 678999999999553


Q ss_pred             hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102          212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGA  257 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga  257 (317)
                       ++..+ +..-..+++++++|.+.-|= -.++.+.+.+...++.++
T Consensus        82 -~~~~l-~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           82 -NSRYE-ELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIGG  124 (312)
T ss_dssp             -GGGHH-HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEEE
T ss_pred             -cHHHH-HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEE
Confidence             33332 33445678899999987762 225566676665565443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.69  E-value=4.9e-05  Score=60.42  Aligned_cols=85  Identities=15%  Similarity=0.200  Sum_probs=56.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccc----cCCHH---Hh-cccCCEEEEeccCChhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKY----YPNLI---DL-ASNCQILVVACSLTEET  213 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~----~~~l~---el-~~~aDvV~~~lp~~~~t  213 (317)
                      +++|+|+|+|.+|+.+++.|...|.+|.++++++...      .+...    ..+.+   +. +.++|+|++++|....+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            5789999999999999999999999999998865321      12111    11222   22 67899999998865433


Q ss_pred             hccccHHHHhccCCCcEEEEe
Q 042102          214 QHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~  234 (317)
                      .  .-....+.++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  223345567777666543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.68  E-value=2e-05  Score=71.71  Aligned_cols=103  Identities=12%  Similarity=0.077  Sum_probs=70.6

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC---------ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN---------YKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~---------~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      ++.|+++.|+|.|.+|+.++..|...|+ +|.+++|+..+...         .....+++++..++|+|+.++|..-...
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence            5789999999999999999999999997 89999997643210         0112245566688999999999753321


Q ss_pred             -ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          215 -HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       215 -~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                       -.+..   +.++++.+++++.-.+ ..+. |+++.++.
T Consensus       203 ~~~l~~---~~l~~~~~V~DlvY~P-~~T~-ll~~A~~~  236 (281)
T 3o8q_A          203 LPAIDP---VIFSSRSVCYDMMYGK-GYTV-FNQWARQH  236 (281)
T ss_dssp             -CSCCG---GGEEEEEEEEESCCCS-SCCH-HHHHHHHT
T ss_pred             CCCCCH---HHhCcCCEEEEecCCC-ccCH-HHHHHHHC
Confidence             12333   3467888999987654 3444 44444443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.64  E-value=2.5e-05  Score=70.63  Aligned_cols=96  Identities=14%  Similarity=0.029  Sum_probs=59.7

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC------c---cccCCHHHhcc-cCCEEEEeccCChhhh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN------Y---KYYPNLIDLAS-NCQILVVACSLTEETQ  214 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~------~---~~~~~l~el~~-~aDvV~~~lp~~~~t~  214 (317)
                      .+.|++++|+|.|.+|++++..|...|.+|.+++|+..+...      .   ....+++++.+ ++|+|+.++|......
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~  195 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG  195 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCCC
Confidence            467899999999999999999999999999999997543210      0   00123334434 8999999998654311


Q ss_pred             c-cccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102          215 H-IVNRQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       215 ~-li~~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      - -+..+.   ++++.+++|+.-....+..
T Consensus       196 ~~~i~~~~---l~~~~~v~D~~y~p~~~t~  222 (272)
T 1p77_A          196 TASVDAEI---LKLGSAFYDMQYAKGTDTP  222 (272)
T ss_dssp             --CCCHHH---HHHCSCEEESCCCTTSCCH
T ss_pred             CCCCCHHH---cCCCCEEEEeeCCCCcCCH
Confidence            0 022222   2455666666654433233

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.64  E-value=5.4e-05  Score=70.12  Aligned_cols=100  Identities=13%  Similarity=0.070  Sum_probs=73.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC--------------------C---C-------ccccCCHHHhc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN--------------------L---N-------YKYYPNLIDLA  197 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------------~---~-------~~~~~~l~el~  197 (317)
                      -.+|+|||.|.||+.+|..+...|++|..+|++++..                    .   .       .....++.+.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            4589999999999999999999999999999875320                    0   0       01246788999


Q ss_pred             ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          198 SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       198 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      +.||+|+=++|-+-+.+.-+-++.=+.++++++|-...++  +....+.+.+
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~  135 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGL  135 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTC
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhc
Confidence            9999999999988887654545555668999998544443  3445565554

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.63  E-value=6.7e-05  Score=67.69  Aligned_cols=90  Identities=13%  Similarity=0.124  Sum_probs=62.5

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------Cc---cccCCHHHhc-ccCCEEEEeccCChhhh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------NY---KYYPNLIDLA-SNCQILVVACSLTEETQ  214 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~---~~~~~l~el~-~~aDvV~~~lp~~~~t~  214 (317)
                      .+.|+++.|+|.|.+|+.+++.|...|.+|.+++|+..+..      +.   ....+++++. .++|+|+.++|..... 
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~-  194 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-  194 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC-
Confidence            46789999999999999999999999999999998754210      00   0112333433 5899999999865431 


Q ss_pred             cc--ccHHHHhccCCCcEEEEeCCCc
Q 042102          215 HI--VNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       215 ~l--i~~~~l~~mk~gavlVN~~rg~  238 (317)
                      .+  +..+   .++++.+++|+.-..
T Consensus       195 ~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          195 DIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             CCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             CCCCCCHH---HcCCCCEEEEeccCC
Confidence            11  2222   256788888887654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.61  E-value=9.6e-05  Score=69.96  Aligned_cols=154  Identities=17%  Similarity=0.202  Sum_probs=102.0

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-
Q 042102           94 GIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-  172 (317)
Q Consensus        94 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-  172 (317)
                      .|++.|. +  -.-+|=-+++.+++.+| +                  .+..+...+|.|+|.|..|..+|+.+.++|. 
T Consensus       156 ~ipvf~D-D--iqGTa~V~lAall~al~-l------------------~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~  213 (398)
T 2a9f_A          156 HIPVFHD-D--QHGTAIVVLAAIFNSLK-L------------------LKKSLDEVSIVVNGGGSAGLSITRKLLAAGAT  213 (398)
T ss_dssp             SSCEEEH-H--HHHHHHHHHHHHHHHHH-T------------------TTCCTTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             Ccceecc-h--hhhHHHHHHHHHHHHHH-H------------------hCCCCCccEEEEECCCHHHHHHHHHHHHcCCC
Confidence            5888883 2  12344445555555544 1                  2446888999999999999999999999999 


Q ss_pred             EEEEeCCCC-----C-C-CCCc-----------cccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102          173 IIGYNSRTE-----K-P-NLNY-----------KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       173 ~V~~~~~~~-----~-~-~~~~-----------~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~  234 (317)
                      +|+.+|++.     . . ....           ....+|+|+++.+|+++-.-     .-+++.++.++.|+++++++.+
T Consensus       214 ~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~Ma~~pIIfal  288 (398)
T 2a9f_A          214 KVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS-----APGVLKAEWISKMAARPVIFAM  288 (398)
T ss_dssp             EEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHTSCSSCEEEEC
T ss_pred             eEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHhhCCCCEEEEC
Confidence            899998762     1 1 1110           01346999999999887662     2589999999999999999999


Q ss_pred             CCCcccCHHHHHHHHHhCC-ceEEEeeCCCCCCCCCcccCCCCceEEcccCC
Q 042102          235 GRGLLVDEHELVSALLQGR-LGGAGLDVFEHEPDVPEELIGLENVVLLPHVA  285 (317)
Q Consensus       235 ~rg~~vd~~aL~~al~~g~-i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a  285 (317)
                      |+...  |-.-.++.+.|+ |-+.+   -...      .-+..|+++-|=++
T Consensus       289 sNPt~--E~~pe~a~~~g~~i~atG---rs~~------p~Q~NN~~~FPgi~  329 (398)
T 2a9f_A          289 ANPIP--EIYPDEALEAGAYIVGTG---RSDF------PNQINNVLAFPGIF  329 (398)
T ss_dssp             CSSSC--SSCHHHHHTTTCSEEEES---CTTS------SSBCCGGGTHHHHH
T ss_pred             CCCCc--cCCHHHHHHhCCeEEEeC---CCCC------CCcCCceeEcchHH
Confidence            98653  222223333466 33222   1111      23556777777554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.60  E-value=3.5e-05  Score=59.39  Aligned_cols=84  Identities=12%  Similarity=0.123  Sum_probs=56.2

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCC-----CCcc-------ccCCHHHhcccCCEEEEeccCChhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPN-----LNYK-------YYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~-----~~~~-------~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      .+++|+|+|.|.||+.+++.|...| .+|.++++++...     .+..       ...++.++++++|+|+.+.|.... 
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~-   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT-   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH-
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh-
Confidence            3579999999999999999999999 8999998875321     1111       112355678889999998874321 


Q ss_pred             hccccHHHHhccCCCcEEEEeC
Q 042102          214 QHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ..++.    ...+.|...++.+
T Consensus        83 ~~~~~----~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAK----AAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHH----HHHHTTCEEECCC
T ss_pred             HHHHH----HHHHhCCCEEEec
Confidence            11111    1234566666664

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.59  E-value=6e-05  Score=60.11  Aligned_cols=91  Identities=15%  Similarity=0.226  Sum_probs=57.5

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc-c---cCC---HHHh-cccCCEEEEeccCChh
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK-Y---YPN---LIDL-ASNCQILVVACSLTEE  212 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~-~---~~~---l~el-~~~aDvV~~~lp~~~~  212 (317)
                      +.++++.|+|+|.+|+.+++.|...|++|.++++++...     .+.. .   ..+   +.++ +.++|+|+.+++...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            567889999999999999999999999998888764321     1111 1   122   2333 6789999999886522


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCc
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      +. +.-....+.+.+. .+|-...+.
T Consensus        84 ~~-~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           84 AS-TLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HH-HHHHHHHHHTTCS-EEEEECCSH
T ss_pred             HH-HHHHHHHHHcCCC-eEEEEeCCH
Confidence            21 1223344556665 455544443

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.59  E-value=7.9e-05  Score=67.47  Aligned_cols=105  Identities=17%  Similarity=0.065  Sum_probs=68.5

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC------c--cccCCHHHhc-ccCCEEEEeccCChhh
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN------Y--KYYPNLIDLA-SNCQILVVACSLTEET  213 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~------~--~~~~~l~el~-~~aDvV~~~lp~~~~t  213 (317)
                      .++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++...      .  ....+++++- .++|+|+.++|..-..
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~  195 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTA  195 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGT
T ss_pred             CCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCC
Confidence            35789999999999999999999999996 89999997643210      0  1112334433 7899999999864321


Q ss_pred             h-ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          214 Q-HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       214 ~-~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      . -.+..   +.++++.+++++.-.+ ..+.-|..|-+.|
T Consensus       196 ~~~~i~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  231 (272)
T 3pwz_A          196 DLPPLPA---DVLGEAALAYELAYGK-GLTPFLRLAREQG  231 (272)
T ss_dssp             CCCCCCG---GGGTTCSEEEESSCSC-CSCHHHHHHHHHS
T ss_pred             CCCCCCH---HHhCcCCEEEEeecCC-CCCHHHHHHHHCC
Confidence            1 12333   3457788888886653 3344333444444

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.54  E-value=6.8e-05  Score=69.16  Aligned_cols=101  Identities=15%  Similarity=0.157  Sum_probs=65.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC-----------------ccccCCHHHhcccCCEEEEeccC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN-----------------YKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      .++|+|||.|.||..+|..+...|. +|..+|++++....                 .....++ +.++.||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999988888 99999987642111                 1112456 778999999999842


Q ss_pred             Ch-----------hhhcccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          210 TE-----------ETQHIVN--RQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       210 ~~-----------~t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      ..           ++..++.  -+.+....|++++|+++...-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            11           1111110  1122233579999999875544444555543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.52  E-value=5.1e-05  Score=60.98  Aligned_cols=85  Identities=7%  Similarity=0.052  Sum_probs=54.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----ccCC---HHHh-cccCCEEEEeccCChhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YYPN---LIDL-ASNCQILVVACSLTEET  213 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~el-~~~aDvV~~~lp~~~~t  213 (317)
                      .++++.|+|+|.+|+.+++.|...|.+|.++|++++..     .+..    ...+   +.++ +.++|+|+++.|..+.+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN   84 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence            45789999999999999999999999999999875421     1111    1122   2222 56899999998844332


Q ss_pred             hccccHHHHhccCCCcEEEE
Q 042102          214 QHIVNRQVINALGPKGVLIN  233 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN  233 (317)
                        +.-....+.+....+++-
T Consensus        85 --~~~~~~a~~~~~~~iia~  102 (141)
T 3llv_A           85 --LKILKALRSVSDVYAIVR  102 (141)
T ss_dssp             --HHHHHHHHHHCCCCEEEE
T ss_pred             --HHHHHHHHHhCCceEEEE
Confidence              333344455553344443

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.51  E-value=0.0003  Score=62.88  Aligned_cols=101  Identities=19%  Similarity=0.171  Sum_probs=70.6

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEE-EEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCII-GYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA  224 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V-~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~  224 (317)
                      -+.++|+++|+|.||+.+++.  . ++++ .+|+ ......+.....+++++++++|+|+=|.+ .+    -+.+...+.
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~gelgv~a~~d~d~lla~pD~VVe~A~-~~----av~e~~~~i   80 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISKDIPGVVRLDEFQVPSDVSTVVECAS-PE----AVKEYSLQI   80 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCCCCSSSEECSSCCCCTTCCEEEECSC-HH----HHHHHHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-ccccccCceeeCCHHHHhhCCCEEEECCC-HH----HHHHHHHHH
Confidence            456799999999999999998  3 7765 4566 21111233345778999889998887753 22    233345666


Q ss_pred             cCCCcEEEEeCCCcccCH---HHHHHHHHhCCce
Q 042102          225 LGPKGVLINIGRGLLVDE---HELVSALLQGRLG  255 (317)
Q Consensus       225 mk~gavlVN~~rg~~vd~---~aL~~al~~g~i~  255 (317)
                      ++.|.-+|-+|-|.+.|.   +.|.++.++|.-+
T Consensus        81 L~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           81 LKNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             TTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            888999999999988887   4566666666654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.50  E-value=0.00024  Score=68.45  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=78.0

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCC---EEEEeC----CC----CC-C---CCCc-----c------ccCCHHHh
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDC---IIGYNS----RT----EK-P---NLNY-----K------YYPNLIDL  196 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~----~~----~~-~---~~~~-----~------~~~~l~el  196 (317)
                      +..+.++++.|+|.|..|+.+++.|...|+   +|+++|    |+    .. .   ....     .      ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            346789999999999999999999999998   798888    65    21 1   1110     0      13468889


Q ss_pred             cccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCC
Q 042102          197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGR  253 (317)
Q Consensus       197 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~  253 (317)
                      ++++|+++.+.|..+   +++.++.++.|++++++++++..  ..+.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP--~~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANP--VPEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSS--SCSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCC--CCcchHHHHHHcCC
Confidence            999999999988532   56667788899999999999543  34445555555555

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.50  E-value=5.7e-05  Score=71.79  Aligned_cols=84  Identities=6%  Similarity=0.027  Sum_probs=60.5

Q ss_pred             CeEEEEecChhHHHHHHHHhh-CCCEEEEeC---CCCCC------CC----------C--c-------cccCCHHHhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEA-FDCIIGYNS---RTEKP------NL----------N--Y-------KYYPNLIDLASN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~---~~~~~------~~----------~--~-------~~~~~l~el~~~  199 (317)
                      ++|+|||.|.||..+|..|.. .|.+|.+++   ++++.      ..          +  .       ....+++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            489999999999999999977 599999998   53210      00          1  0       123467888899


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~  234 (317)
                      +|+|++++|... .+.++ ++....+++++++|+.
T Consensus        83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999654 33333 3344557789999984

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.47  E-value=0.00031  Score=63.86  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=70.7

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------Cccc--cCCHHHhcccCCEEEEecc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------NYKY--YPNLIDLASNCQILVVACS  208 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~~~--~~~l~el~~~aDvV~~~lp  208 (317)
                      .+.|+++.|+|.|.+|+.++..|...|+ +|.+++|+..+..             ....  ..++.+.++++|+|+.+.|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            4789999999999999999999999999 7999999864321             0111  2378888899999999999


Q ss_pred             CChhhh--ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          209 LTEETQ--HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       209 ~~~~t~--~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      ..-...  -.+.   .+.++++.+++++.-.+ ....-|..|-+.|
T Consensus       204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P-~~T~ll~~A~~~G  245 (283)
T 3jyo_A          204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYMP-IETELLKAARALG  245 (283)
T ss_dssp             TTSTTSCSCSSC---GGGCCTTCEEEECCCSS-SSCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCC---HHHhCCCCEEEEecCCC-CCCHHHHHHHHCc
Confidence            532111  1133   23467788888876544 2333333444444

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.40  E-value=0.00054  Score=63.25  Aligned_cols=93  Identities=17%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCC---CCC----------C--c--cccCC---HHHhcccCCE
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEK---PNL----------N--Y--KYYPN---LIDLASNCQI  202 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~---~~~----------~--~--~~~~~---l~el~~~aDv  202 (317)
                      .++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.+   +..          +  .  ....+   +.+.++++|+
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi  229 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI  229 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence            35889999999999999999999999999 8999999832   110          0  0  11222   4566789999


Q ss_pred             EEEeccCC--hhhhc-cccHHHHhccCCCcEEEEeCCCc
Q 042102          203 LVVACSLT--EETQH-IVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       203 V~~~lp~~--~~t~~-li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      |+.+.|..  +.... .+.  ....++++.+++++.-.+
T Consensus       230 IINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P  266 (315)
T 3tnl_A          230 FTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP  266 (315)
T ss_dssp             EEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS
T ss_pred             EEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC
Confidence            99999853  11111 121  123467788888876544

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.38  E-value=4.6e-05  Score=69.46  Aligned_cols=91  Identities=15%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCc---cccCCHHHhc-ccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNY---KYYPNLIDLA-SNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~---~~~~~l~el~-~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.+..     .+.   ....+..+.+ ..+|+|++++|... +..++ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~-~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQ-LDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGG-HHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccC-HHHHH-H
Confidence            589999999999999999998899999998875321     111   0111233444 88999999999653 44443 2


Q ss_pred             HHHhccCCCcEEEEeCCCcccC
Q 042102          220 QVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      ..-..+++++++|.+.-|=-..
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~~~  102 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYGQL  102 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCCCG
T ss_pred             HHHHhhCCCCEEEEeccCcccH
Confidence            3334567788999988775443

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.37  E-value=7.7e-05  Score=67.82  Aligned_cols=105  Identities=14%  Similarity=0.091  Sum_probs=69.5

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCcc---------------ccCCHHHhcccCCEEEEeccC
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK---------------YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---------------~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ++.|+++.|+|.|.+|+++++.|...| +|.+++|+........               ...++.+.+.++|+|+.+.|.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence            478899999999999999999999999 9999998754211000               011224567889999999886


Q ss_pred             Chhhh--c-cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102          210 TEETQ--H-IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRL  254 (317)
Q Consensus       210 ~~~t~--~-li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i  254 (317)
                      .....  . .+.  ..+.++++.+++|+.-.. ... .|.+..++..+
T Consensus       204 ~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p-~~t-~ll~~a~~~G~  247 (287)
T 1nvt_A          204 GMYPNIDVEPIV--KAEKLREDMVVMDLIYNP-LET-VLLKEAKKVNA  247 (287)
T ss_dssp             TCTTCCSSCCSS--CSTTCCSSSEEEECCCSS-SSC-HHHHHHHTTTC
T ss_pred             CCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC-ccC-HHHHHHHHCCC
Confidence            53211  0 120  134578899999998643 233 35554444433

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.32  E-value=0.00033  Score=63.70  Aligned_cols=104  Identities=10%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC----Cc--cccCCHHHhcccCCEEEEeccCC--hhhh-
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL----NY--KYYPNLIDLASNCQILVVACSLT--EETQ-  214 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~----~~--~~~~~l~el~~~aDvV~~~lp~~--~~t~-  214 (317)
                      ++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++..    ..  ....++.+ + ++|+|+.++|..  +... 
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence            4789999999999999999999999998 8999998864321    11  11223334 4 899999999863  2211 


Q ss_pred             ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          215 HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      -.+..+.   ++++.+++++.-.+. .+ .|+++.++..+.
T Consensus       197 ~pi~~~~---l~~~~~v~DlvY~P~-~T-~ll~~A~~~G~~  232 (282)
T 3fbt_A          197 SPVDKEV---VAKFSSAVDLIYNPV-ET-LFLKYARESGVK  232 (282)
T ss_dssp             CSSCHHH---HTTCSEEEESCCSSS-SC-HHHHHHHHTTCE
T ss_pred             CCCCHHH---cCCCCEEEEEeeCCC-CC-HHHHHHHHCcCe
Confidence            1244443   578889999865442 33 455444444443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.30  E-value=0.00055  Score=63.58  Aligned_cols=64  Identities=11%  Similarity=0.089  Sum_probs=49.8

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------C----ccccCCHHHhcccCCEEEEec--
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------N----YKYYPNLIDLASNCQILVVAC--  207 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDvV~~~l--  207 (317)
                      .++|+|||.|.+|..+|..|...|. +|..+|+.++...             .    .....++++.++.||+|+++.  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            3689999999999999999988887 8999998764211             0    112367888899999999998  


Q ss_pred             cCCh
Q 042102          208 SLTE  211 (317)
Q Consensus       208 p~~~  211 (317)
                      |..+
T Consensus        89 p~~~   92 (331)
T 1pzg_A           89 TKVP   92 (331)
T ss_dssp             SSCT
T ss_pred             CCCC
Confidence            6443

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.30  E-value=0.0006  Score=62.50  Aligned_cols=102  Identities=24%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             CeEEEEecChhHHH-HHHHHhhC-CCEEE-EeCCCCCCCC------CccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAF-DCIIG-YNSRTEKPNL------NYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      .+|||||+|.||+. +++.++.. |+++. ++|+++....      +...+.+++++..++|+|++++|......     
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~-----   80 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD-----   80 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH-----
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHH-----
Confidence            58999999999997 88887654 67765 8888765421      22345677777678999999999654322     


Q ss_pred             HHHhccCCCc-EEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          220 QVINALGPKG-VLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       220 ~~l~~mk~ga-vlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                      -....++.|. +++.- .-..+-+.+.|.++.++..+.
T Consensus        81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            2223455665 55542 223344566788888777665

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.29  E-value=0.00046  Score=56.27  Aligned_cols=88  Identities=6%  Similarity=-0.041  Sum_probs=58.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC---------CCCccc----c---CCHHHh-cccCCEEEEeccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP---------NLNYKY----Y---PNLIDL-ASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~---------~~~~~~----~---~~l~el-~~~aDvV~~~lp~~  210 (317)
                      ++++.|+|+|.+|+.+++.|...|.+|.+.++++..         ..+...    .   ..+.++ +.++|.|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            468999999999999999999999999998886310         111111    1   124444 78999999998866


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      +.+.  .-....+.+.+...+|...+.
T Consensus        83 ~~n~--~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           83 ADNA--FVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             HHHH--HHHHHHHHHTSSSCEEEECSS
T ss_pred             HHHH--HHHHHHHHHCCCCEEEEEECC
Confidence            5433  334455556454555554333

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.26  E-value=0.00022  Score=65.45  Aligned_cols=62  Identities=15%  Similarity=0.231  Sum_probs=47.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCCC---------------Cccc-cCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPNL---------------NYKY-YPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~---------------~~~~-~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|||.|.||..+|..|...|  .+|..+|++.+...               .... ..++ +.++.||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998778  68999998753210               0111 2456 7789999999999864


Q ss_pred             h
Q 042102          211 E  211 (317)
Q Consensus       211 ~  211 (317)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.26  E-value=0.00032  Score=64.02  Aligned_cols=103  Identities=13%  Similarity=0.132  Sum_probs=67.9

Q ss_pred             CCeEEEEecChhHHH-HHHHHhh-CCCEEE-EeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          148 GKSVGILGMGRIGTA-IAKRAEA-FDCIIG-YNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       148 g~~vgIiG~G~iG~~-~a~~l~~-~G~~V~-~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ..+|||||+|.||+. .++.++. -++++. ++|+++...      .+...+.+++++++++|+|++++|.......   
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~---   82 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEI---   82 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHH---
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHH---
Confidence            368999999999996 8888876 467775 788876432      1233467899999999999999996544321   


Q ss_pred             HHHHhccCCCc-EEEE-eCCCcccCHHHHHHHHHhCCce
Q 042102          219 RQVINALGPKG-VLIN-IGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       219 ~~~l~~mk~ga-vlVN-~~rg~~vd~~aL~~al~~g~i~  255 (317)
                        ....++.|. +++. ..--.+-+.+.|.++.++..+.
T Consensus        83 --~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           83 --IKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             --HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             --HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence              223344453 4443 1223334556777777765554

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.00056  Score=63.05  Aligned_cols=63  Identities=17%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC------CCccccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN------LNYKYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+..++.+... ++++. ++|+++...      .+.. +.+++++++  ++|+|++++|....
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h   76 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTH   76 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhH
Confidence            4899999999999999999876 77865 688875432      2333 678999998  89999999996544

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.22  E-value=0.00079  Score=59.86  Aligned_cols=81  Identities=16%  Similarity=0.193  Sum_probs=55.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP  227 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~  227 (317)
                      ++|+|+|+|+||+.+++.+...+-++. ++++......+.....++++++ ++|+++-..+. ..+.     +.++ ++.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~-----~~~~-l~~   75 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNP-NLLF-----PLLD-EDF   75 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCH-HHHH-----HHHT-SCC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCCh-HHHH-----HHHH-Hhc
Confidence            589999999999999999987655754 5788765545555667888888 99998744321 1222     2333 677


Q ss_pred             CcEEEEeCCC
Q 042102          228 KGVLINIGRG  237 (317)
Q Consensus       228 gavlVN~~rg  237 (317)
                      |.-+|....|
T Consensus        76 g~~vVigTTG   85 (243)
T 3qy9_A           76 HLPLVVATTG   85 (243)
T ss_dssp             CCCEEECCCS
T ss_pred             CCceEeCCCC
Confidence            7666755555

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.21  E-value=0.00033  Score=64.63  Aligned_cols=88  Identities=16%  Similarity=0.316  Sum_probs=58.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC--------------cc-ccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN--------------YK-YYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~--------------~~-~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+|||.|.||..++..|...|.  +|..+|++++....              .. ...+ .+.++.||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            479999999999999999988888  99999987532100              01 1134 456789999999998643


Q ss_pred             h---hh--------ccccHHHHh---ccCCCcEEEEeCCCc
Q 042102          212 E---TQ--------HIVNRQVIN---ALGPKGVLINIGRGL  238 (317)
Q Consensus       212 ~---t~--------~li~~~~l~---~mk~gavlVN~~rg~  238 (317)
                      .   ++        .++ ++.++   ...|++++|+++-+.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~  119 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPV  119 (319)
T ss_dssp             CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSH
T ss_pred             CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcH
Confidence            2   01        111 22222   235788998875543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.20  E-value=0.00025  Score=64.99  Aligned_cols=102  Identities=12%  Similarity=0.156  Sum_probs=66.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEE-EEeCCCCCCCC----CccccCCHHHhcc--cCCEEEEeccCChhhhccccHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCII-GYNSRTEKPNL----NYKYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~~----~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      .+|||||+|.||+..++.++.. ++++ .++|+++....    ....+.+++++++  ++|+|++++|......     -
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~-----~   85 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAE-----I   85 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHH-----H
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHH-----H
Confidence            4899999999999999999876 5765 47887653221    1234568899985  7999999999543322     2


Q ss_pred             HHhccCCCc-EEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          221 VINALGPKG-VLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       221 ~l~~mk~ga-vlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        86 ~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           86 TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            223355664 55552 122333456677777665544

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.20  E-value=0.00087  Score=61.78  Aligned_cols=91  Identities=16%  Similarity=0.183  Sum_probs=61.7

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC---CC----------Cc----cccCCH---HHhcccCCEE
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP---NL----------NY----KYYPNL---IDLASNCQIL  203 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~---~~----------~~----~~~~~l---~el~~~aDvV  203 (317)
                      ++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.+.   ..          +.    ....++   .+.++++|+|
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            5789999999999999999999999999 89999998322   10          00    112343   5567889999


Q ss_pred             EEeccCCh--hhhccc--cHHHHhccCCCcEEEEeCCCc
Q 042102          204 VVACSLTE--ETQHIV--NRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       204 ~~~lp~~~--~t~~li--~~~~l~~mk~gavlVN~~rg~  238 (317)
                      +.+.|..-  .....+  +.   +.++++.+++++.-.+
T Consensus       225 INaTp~Gm~~~~~~~~~~~~---~~l~~~~~v~D~vY~P  260 (312)
T 3t4e_A          225 TNGTKVGMKPLENESLIGDV---SLLRPELLVTECVYNP  260 (312)
T ss_dssp             EECSSTTSTTSTTCCSCCCG---GGSCTTCEEEECCCSS
T ss_pred             EECCcCCCCCCCCCcccCCH---HHcCCCCEEEEeccCC
Confidence            99988642  111111  22   3356777777775543

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.16  E-value=0.00084  Score=61.66  Aligned_cols=60  Identities=17%  Similarity=0.257  Sum_probs=46.1

Q ss_pred             CeEEEEecChhHHHHHHHHhh--CCCEEEEeCCCCCCCC---------------C--ccccCCHHHhcccCCEEEEeccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEA--FDCIIGYNSRTEKPNL---------------N--YKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~---------------~--~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ++|+|||.|.+|..+|..|..  +|.+|..+|+.++...               .  .....++++ ++.||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            479999999999999999976  5789999998764211               0  011245666 8999999999974

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.15  E-value=0.0013  Score=60.54  Aligned_cols=100  Identities=13%  Similarity=0.143  Sum_probs=65.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEE-EEeCCCCCCCC--CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCII-GYNSRTEKPNL--NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA  224 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~  224 (317)
                      .+|||||+|+||+.+++.+... ++++ .+++++.....  +...+.++++++.++|+|++++|.....     +.....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~~~a   78 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQAPK   78 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHHHHH
Confidence            4799999999999999999876 5775 57777643321  2223457788888899999999865332     233455


Q ss_pred             cCCCcEEEEeCCCcc-c-CH-HHHHHHHHhCC
Q 042102          225 LGPKGVLINIGRGLL-V-DE-HELVSALLQGR  253 (317)
Q Consensus       225 mk~gavlVN~~rg~~-v-d~-~aL~~al~~g~  253 (317)
                      ++.|.-+|...-..+ + +. +.|.++.+++.
T Consensus        79 l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            666776665544332 2 22 45666666554

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.14  E-value=0.001  Score=61.72  Aligned_cols=87  Identities=21%  Similarity=0.245  Sum_probs=58.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC---------------C--ccccCCHHHhcccCCEEEEec--c
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL---------------N--YKYYPNLIDLASNCQILVVAC--S  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---------------~--~~~~~~l~el~~~aDvV~~~l--p  208 (317)
                      ++|+|||.|.+|..+|..+...|. +|..+|++.+...               .  .....++ +.++.||+|+++.  |
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p   93 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP   93 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            689999999999999999998888 9999998764321               0  1112456 7889999999998  4


Q ss_pred             CChh-h--------hcccc--HHHHhccCCCcEEEEeCC
Q 042102          209 LTEE-T--------QHIVN--RQVINALGPKGVLINIGR  236 (317)
Q Consensus       209 ~~~~-t--------~~li~--~~~l~~mk~gavlVN~~r  236 (317)
                      ..+. +        ..++.  .+.+....|++++++++-
T Consensus        94 ~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           94 RKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             CCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            3221 1        11110  112223348899988754

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.14  E-value=0.0011  Score=58.24  Aligned_cols=90  Identities=20%  Similarity=0.217  Sum_probs=58.6

Q ss_pred             ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------C-ccc-cCC-HHHhcccCCEEEEeccCC
Q 042102          140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------N-YKY-YPN-LIDLASNCQILVVACSLT  210 (317)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~-~~~-~~~-l~el~~~aDvV~~~lp~~  210 (317)
                      +|+.-++.|++|.|||.|.+|..-++.|...|++|.++++...+..      + ... ..+ ..+.+..+|+|+.+.. +
T Consensus        23 ~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d  101 (223)
T 3dfz_A           23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-D  101 (223)
T ss_dssp             CEEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-C
T ss_pred             cccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-C
Confidence            5667789999999999999999999999999999999987643210      0 110 011 1245677887776543 3


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ++.    |.......+ -.++||+.
T Consensus       102 ~~~----N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          102 QAV----NKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             THH----HHHHHHHSC-TTCEEEC-
T ss_pred             HHH----HHHHHHHHh-CCCEEEEe
Confidence            332    333333345 55667764

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.13  E-value=0.00055  Score=62.94  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=63.0

Q ss_pred             CeEEEEecChhHHHH-HHHHhhCCCEEE-EeCCCCCCC------CCc-cccCCHHHhcc--cCCEEEEeccCChhhhccc
Q 042102          149 KSVGILGMGRIGTAI-AKRAEAFDCIIG-YNSRTEKPN------LNY-KYYPNLIDLAS--NCQILVVACSLTEETQHIV  217 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~-a~~l~~~G~~V~-~~~~~~~~~------~~~-~~~~~l~el~~--~aDvV~~~lp~~~~t~~li  217 (317)
                      .+|||||+|.||+.+ ++.++.-|+++. ++|+++...      .+. ..+.+++++++  ++|+|++++|......   
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~---   77 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHRE---   77 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHH---
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHH---
Confidence            379999999999998 777766778765 778875432      122 24578999987  5999999999543321   


Q ss_pred             cHHHHhccCCCc-EEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          218 NRQVINALGPKG-VLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       218 ~~~~l~~mk~ga-vlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                        -....++.|. +++.- .....-+.+.|.++.++..+.
T Consensus        78 --~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~  115 (332)
T 2glx_A           78 --QTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVV  115 (332)
T ss_dssp             --HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             --HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCE
Confidence              2223345564 44431 112233445566666554443

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.07  E-value=0.0016  Score=60.24  Aligned_cols=58  Identities=14%  Similarity=0.119  Sum_probs=45.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC---------------C--ccccCCHHHhcccCCEEEEec
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL---------------N--YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---------------~--~~~~~~l~el~~~aDvV~~~l  207 (317)
                      ++|+|||.|.+|..+|..+...|. +|..+|..++...               .  .....++ +.++.||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            589999999999999999998887 8999998764210               1  1112566 7799999999998

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.06  E-value=0.00046  Score=63.95  Aligned_cols=64  Identities=14%  Similarity=0.133  Sum_probs=50.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC------CCccccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN------LNYKYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+..++.++.. ++++. ++|+++...      .+...+.+++++++  ++|+|++++|....
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h   78 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTH   78 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhh
Confidence            4899999999999999999876 67765 788765431      23445678999998  89999999996554

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.05  E-value=0.0012  Score=60.49  Aligned_cols=100  Identities=16%  Similarity=0.114  Sum_probs=60.1

Q ss_pred             CeEEEEecChhHHHHHHHHhh-CCCEEE-EeCCCCCCCC--Cc--cccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEA-FDCIIG-YNSRTEKPNL--NY--KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~~--~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .+|||||+|.||+.+++.++. -++++. ++|+++....  +.  ....++.+. .++|+|++++|.....     +-..
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----~~~~   83 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----RTAL   83 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----HHHH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----HHHH
Confidence            589999999999999999986 467876 6887664321  11  123455555 7899999999854332     2223


Q ss_pred             hccCCCcEEEEeCC--C-cccCHHHHHHHHHhCCc
Q 042102          223 NALGPKGVLINIGR--G-LLVDEHELVSALLQGRL  254 (317)
Q Consensus       223 ~~mk~gavlVN~~r--g-~~vd~~aL~~al~~g~i  254 (317)
                      ..++.|.-++...-  + .+.+.+.|.++.++..+
T Consensus        84 ~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~  118 (304)
T 3bio_A           84 EILKKGICTADSFDIHDGILALRRSLGDAAGKSGA  118 (304)
T ss_dssp             HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence            44566666665432  1 12233566666655443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.00085  Score=63.71  Aligned_cols=88  Identities=24%  Similarity=0.226  Sum_probs=62.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC--------CEEEEeCCCCCCC------------------CC------ccccCCHHHh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD--------CIIGYNSRTEKPN------------------LN------YKYYPNLIDL  196 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G--------~~V~~~~~~~~~~------------------~~------~~~~~~l~el  196 (317)
                      .+|+|||.|..|.++|..|...|        .+|..|.|.++..                  ++      .....++++.
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a  114 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS  114 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence            38999999999999999997543        3588887654310                  01      1134679999


Q ss_pred             cccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102          197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       197 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                      ++.||+|++++|.. ..+.++ ++.-..++++..+|+++-|=
T Consensus       115 l~~ad~ii~avPs~-~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          115 VKDVDIIVFNIPHQ-FLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             HTTCSEEEECSCGG-GHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             HhcCCEEEEECChh-hhHHHH-HHhccccCCCceeEEecccc
Confidence            99999999999932 233332 34445678899999998873

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.03  E-value=0.014  Score=53.60  Aligned_cols=91  Identities=8%  Similarity=0.074  Sum_probs=69.0

Q ss_pred             cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|.+|+++|=|  ++.++.+..+..+|++|.+..+..-...              +  .....+++++++++|+|..-
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            3789999999986  9999999999999999988876432111              1  22357899999999999883


Q ss_pred             ccC-------Chh-----hhccccHHHHhccCCCcEEEEeC
Q 042102          207 CSL-------TEE-----TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       207 lp~-------~~~-----t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      .=.       .++     ....++++.++.+||+++|.-+.
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            320       000     12457899999999999999986

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.03  E-value=0.0011  Score=61.25  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=65.7

Q ss_pred             CeEEEEecChhHHHHHHHHh-h-CCCEE-EEeCCCCCCC------CCc-cccCCHHHhcc--cCCEEEEeccCChhhhcc
Q 042102          149 KSVGILGMGRIGTAIAKRAE-A-FDCII-GYNSRTEKPN------LNY-KYYPNLIDLAS--NCQILVVACSLTEETQHI  216 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~-~-~G~~V-~~~~~~~~~~------~~~-~~~~~l~el~~--~aDvV~~~lp~~~~t~~l  216 (317)
                      .+|||||+|.||+..++.++ . -|+++ .++|+++...      .+. ..+.+++++++  ++|+|++++|......  
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~--   86 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE--   86 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH--
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH--
Confidence            58999999999999999987 5 47775 5778765432      123 34578999986  6999999999543322  


Q ss_pred             ccHHHHhccCCCcE-EEEe-CCCcccCHHHHHHHHHhC-Cce
Q 042102          217 VNRQVINALGPKGV-LINI-GRGLLVDEHELVSALLQG-RLG  255 (317)
Q Consensus       217 i~~~~l~~mk~gav-lVN~-~rg~~vd~~aL~~al~~g-~i~  255 (317)
                         -....++.|.. ++.- .-..+-+.+.|.++.++. .+.
T Consensus        87 ---~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           87 ---MTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ---HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             ---HHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence               22344556653 4421 111222344577777776 554

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.02  E-value=0.0085  Score=54.79  Aligned_cols=98  Identities=15%  Similarity=0.133  Sum_probs=73.4

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------CccccCCHHHhcccCCEEEEeccC-------
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------NYKYYPNLIDLASNCQILVVACSL-------  209 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~l~el~~~aDvV~~~lp~-------  209 (317)
                      .+.|.+|+++|= +++.++.+..+..+|++|.+..+..-...       ......+++++++++|+|..-.=.       
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            378999999997 89999999999999999988876543221       133467899999999999873320       


Q ss_pred             -Ch--h--hhccccHHHHhccCCCcEEEEeC---CCcccCH
Q 042102          210 -TE--E--TQHIVNRQVINALGPKGVLINIG---RGLLVDE  242 (317)
Q Consensus       210 -~~--~--t~~li~~~~l~~mk~gavlVN~~---rg~~vd~  242 (317)
                       ..  +  ....++++.++.+||+++|.-+.   ||.=|+.
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~  271 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTE  271 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCH
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCH
Confidence             11  1  12457899999999999999997   5655553

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.01  E-value=0.0012  Score=60.62  Aligned_cols=102  Identities=9%  Similarity=0.046  Sum_probs=63.7

Q ss_pred             CeEEEEecChhHHH-HHHHHhhC-CCEEEEeCCCCCCC------CCccc-cCCHHHhc-ccCCEEEEeccCChhhhcccc
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAF-DCIIGYNSRTEKPN------LNYKY-YPNLIDLA-SNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~~~~~~~~~~------~~~~~-~~~l~el~-~~aDvV~~~lp~~~~t~~li~  218 (317)
                      .+|||||+|.||+. +++.++.. ++++.++|+++...      .+... ..+..+++ .++|+|++++|......    
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~----   78 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST----   78 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH----
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH----
Confidence            47999999999984 88888765 67777888875432      12221 33444555 78999999999443221    


Q ss_pred             HHHHhccCCCc-EEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          219 RQVINALGPKG-VLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       219 ~~~l~~mk~ga-vlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                       -....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        79 -~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           79 -LAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             -HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence             1223445554 55552 112333455677877776665

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.00  E-value=0.00059  Score=63.52  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=50.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC------CCccccCCHHHhc--ccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN------LNYKYYPNLIDLA--SNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~el~--~~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+..++.++.. ++++. ++|+++...      .+...+.++++++  .+.|+|++++|....
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h   79 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKH   79 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHH
Confidence            5899999999999999999887 78854 778875432      1333467899999  669999999997654

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.00  E-value=0.00098  Score=61.48  Aligned_cols=64  Identities=14%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC------CCc-cccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN------LNY-KYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~------~~~-~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+..++.++.. +++|. ++|++....      .+. ..+.+++++++  ++|+|++++|....
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   80 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGH   80 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGH
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHH
Confidence            5899999999999999999875 67765 678776432      122 34678999987  79999999996643

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.98  E-value=0.00079  Score=63.50  Aligned_cols=61  Identities=23%  Similarity=0.410  Sum_probs=47.1

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Ccc---ccCC---HHHhcccCCEEEE
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NYK---YYPN---LIDLASNCQILVV  205 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~---~~~~---l~el~~~aDvV~~  205 (317)
                      .+.|+||+|+|.|.+|+.+++.++.+|++|+++|+.+....    ...   .+.+   +.++++++|+|+.
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~   81 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY   81 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence            47899999999999999999999999999999887654321    111   1222   6678889999865

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.96  E-value=0.00055  Score=62.74  Aligned_cols=101  Identities=17%  Similarity=0.269  Sum_probs=62.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcccc---------CCH-HHhcccCCEEEEeccCChhh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYY---------PNL-IDLASNCQILVVACSLTEET  213 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~---------~~l-~el~~~aDvV~~~lp~~~~t  213 (317)
                      ++|+|||.|.||..++..|. .|.+|.+++|+....     .+....         .+. .+....+|+|++++|... +
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~-~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQ-L   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGG-H
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHH-H
Confidence            68999999999999999999 899999999875321     111000         001 245678999999998542 3


Q ss_pred             hccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          214 QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ...+  +.++.+.++. +|.+.-|=- .++.+.+.+-..++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEE
Confidence            3332  2233345566 787766632 223444443444443

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.96  E-value=0.00087  Score=61.39  Aligned_cols=108  Identities=14%  Similarity=0.159  Sum_probs=65.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC--------C------cc-ccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL--------N------YK-YYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------~------~~-~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+|||.|.+|..+|..+...|.  +|..+|+......        .      .. ...+ .+.++.||+|+++.+...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            489999999999999999998888  8999998653110        0      00 1123 367899999999985332


Q ss_pred             h-----------hhcccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102          212 E-----------TQHIVN--RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGA  257 (317)
Q Consensus       212 ~-----------t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga  257 (317)
                      .           +..++.  .+.+....|++++|+++-+.=+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           111111  122333468999999765443333344444444566544

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.96  E-value=0.00056  Score=59.17  Aligned_cols=83  Identities=13%  Similarity=0.005  Sum_probs=55.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccc----cC---CHHHh-cccCCEEEEeccCChhhh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKY----YP---NLIDL-ASNCQILVVACSLTEETQ  214 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~----~~---~l~el-~~~aDvV~~~lp~~~~t~  214 (317)
                      ++|.|+|+|.+|+.+|+.|...|.+|.+++++++..      .+...    ..   .+.++ +.++|+|+++++....+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   80 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL   80 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH
Confidence            479999999999999999999999999998765421      11111    11   24444 788999999998765433


Q ss_pred             ccccHHHHhccCCCcEEEE
Q 042102          215 HIVNRQVINALGPKGVLIN  233 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN  233 (317)
                        +-....+.+.+...+|-
T Consensus        81 --~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           81 --FIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             --HHHHHHHHTSCCCEEEE
T ss_pred             --HHHHHHHHHcCCCeEEE
Confidence              22333343333444443

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.94  E-value=0.00051  Score=63.98  Aligned_cols=64  Identities=13%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             CCeEEEEecChhHHHHHHHHhhC--CCEEE-EeCCCCCCC------CCccccCCHHHhcc--cCCEEEEeccCCh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAF--DCIIG-YNSRTEKPN------LNYKYYPNLIDLAS--NCQILVVACSLTE  211 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~el~~--~aDvV~~~lp~~~  211 (317)
                      -.+|||||+|.||+..++.++..  ++++. ++|+++...      .+...+.+++++++  ++|+|++++|...
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   87 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGL   87 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGG
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHH
Confidence            35899999999999999999877  78765 788875432      13345678999987  7999999999654

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.94  E-value=0.0021  Score=58.45  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEE-EeCCCCC--CCCCccccCCHHHhcc--cCCEEEEeccCChhhhccccHHH
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIG-YNSRTEK--PNLNYKYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~~--~~~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      ..+|+|+|+ |.+|+..++.++..|++++ .+++...  ...+...+.+++++..  ..|++++++|.... ..++ .+.
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~-~~~~-~ea   84 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFC-KDSI-LEA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGH-HHHH-HHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHH-HHHH-HHH
Confidence            468999999 9999999999988898854 5666421  2234445778999988  89999999995432 2222 222


Q ss_pred             HhccCCC-cEEEEeCCCcc-cCHHHHHHHHHhCCce
Q 042102          222 INALGPK-GVLINIGRGLL-VDEHELVSALLQGRLG  255 (317)
Q Consensus       222 l~~mk~g-avlVN~~rg~~-vd~~aL~~al~~g~i~  255 (317)
                      +   +.| ..+|..+.|-- -+.+.|.++.++..+.
T Consensus        85 ~---~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           85 I---DAGIKLIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             H---HTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             H---HCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2   233 23344555432 3455888888877665

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.93  E-value=0.00064  Score=60.51  Aligned_cols=87  Identities=14%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCC-------------------CCC-----------CCcc--c-
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTE-------------------KPN-----------LNYK--Y-  189 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~-------------------~~~-----------~~~~--~-  189 (317)
                      ..|.+++|.|||+|.+|..+++.|...|. ++.++|+..                   .+.           ....  . 
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            45889999999999999999999999998 888888764                   110           0000  0 


Q ss_pred             ---c--CCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102          190 ---Y--PNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       190 ---~--~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~  234 (317)
                         .  .+++++++++|+|+.+++ +.+++.++++...+.   |..+|+.
T Consensus       107 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B          107 NALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             CSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             eccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence               1  124567888999988875 456776776554442   3335554

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.89  E-value=0.0024  Score=58.83  Aligned_cols=64  Identities=6%  Similarity=0.104  Sum_probs=48.9

Q ss_pred             CeEEEEecChhHH-HHHHHHhhCCCEE-EEeCCCCCCCC-------CccccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGT-AIAKRAEAFDCII-GYNSRTEKPNL-------NYKYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~-~~a~~l~~~G~~V-~~~~~~~~~~~-------~~~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.+|. .++..++.-|+++ .++|+++....       ....+.+++++++  +.|+|++++|....
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   79 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDR   79 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGH
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhH
Confidence            5899999999996 6777777678886 57888765431       2345678999987  68999999996543

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.88  E-value=0.013  Score=53.72  Aligned_cols=91  Identities=11%  Similarity=0.180  Sum_probs=67.2

Q ss_pred             cccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCCCCCCC--CCccccCCHHHhcccCCEEEEeccCCh--------
Q 042102          145 KFTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSRTEKPN--LNYKYYPNLIDLASNCQILVVACSLTE--------  211 (317)
Q Consensus       145 ~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~~~~--~~~~~~~~l~el~~~aDvV~~~lp~~~--------  211 (317)
                      .+.|.+|++||=|   ++.++.+..+..||++|.+..|..-..  .......+++|+++++|+|..-.-..+        
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~  223 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQ  223 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEeccchhhccccchhH
Confidence            3789999999975   699999999999999998877632111  111235689999999999877421111        


Q ss_pred             ---hhhccccHHHHhccCCCcEEEEeC
Q 042102          212 ---ETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       212 ---~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                         .....++.+.++.+|++++|.-+.
T Consensus       224 ~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          224 EGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             TTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             HHHhCCCccCHHHHhhcCCCCEEECCC
Confidence               112457889999999999998885

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.88  E-value=0.0018  Score=51.37  Aligned_cols=99  Identities=20%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             CeEEEEec----ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102          149 KSVGILGM----GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA  224 (317)
Q Consensus       149 ~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~  224 (317)
                      ++|+|||.    |..|..+.+.|+..|++|+-.++....-.+...+.++.++-. -|++++++|.. .+..++.+  ...
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~~-~v~~~v~e--~~~   80 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINPQ-NQLSEYNY--ILS   80 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCHH-HHGGGHHH--HHH
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCHH-HHHHHHHH--HHh
Confidence            68999998    568999999999999999998887655566666778888877 99999999843 33444432  223


Q ss_pred             cCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          225 LGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       225 mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +...+++++.|  -  .++.+.+..++..++
T Consensus        81 ~g~k~v~~~~G--~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           81 LKPKRVIFNPG--T--ENEELEEILSENGIE  107 (122)
T ss_dssp             HCCSEEEECTT--C--CCHHHHHHHHHTTCE
T ss_pred             cCCCEEEECCC--C--ChHHHHHHHHHcCCe
Confidence            34456666543  2  356777777777776

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.88  E-value=0.0023  Score=59.94  Aligned_cols=64  Identities=14%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             CeEEEEecChhHHH-HHHHHhhC-CCEEE-EeCCCCCCC----CCccccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAF-DCIIG-YNSRTEKPN----LNYKYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~----~~~~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++...    .+...+.+++++++  +.|+|++++|....
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H   80 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATH   80 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHH
Confidence            48999999999997 67777765 67764 778765432    23345689999998  78999999996543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.88  E-value=0.0009  Score=62.37  Aligned_cols=66  Identities=15%  Similarity=0.050  Sum_probs=49.6

Q ss_pred             cCCeEEEEecChhHH-HHHHHHhhC-CCEEE-EeCCCCCCC------CCccccCCHHHhcc--cCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGT-AIAKRAEAF-DCIIG-YNSRTEKPN------LNYKYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~-~~a~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .-.+|||||+|.||+ .+++.++.. +++|. ++|+++...      .+...+.+++++++  +.|+|++++|....
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h  102 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLH  102 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGH
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHH
Confidence            346899999999998 788888877 77765 778765432      13334578999986  58999999996543

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.84  E-value=0.00086  Score=64.86  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             cCCeEEEEecChh--HHHHHHHHhh----CCCEEEEeCCCCCCC--------------CCccccCCHHHhcccCCEEEEe
Q 042102          147 TGKSVGILGMGRI--GTAIAKRAEA----FDCIIGYNSRTEKPN--------------LNYKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       147 ~g~~vgIiG~G~i--G~~~a~~l~~----~G~~V~~~~~~~~~~--------------~~~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+++|+|||.|.+  |..++..+..    .| +|..+|..+...              .......+++++++.||+|+.+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            3569999999998  5788877653    46 999999875321              0122346899999999999999


Q ss_pred             ccCC-----------hhhhccccH------------------------HHHhccCCCcEEEEeCCCcccCHHHHHH
Q 042102          207 CSLT-----------EETQHIVNR------------------------QVINALGPKGVLINIGRGLLVDEHELVS  247 (317)
Q Consensus       207 lp~~-----------~~t~~li~~------------------------~~l~~mk~gavlVN~~rg~~vd~~aL~~  247 (317)
                      ++..           |.-.|+...                        +.+....|++++||++..--+-..++.+
T Consensus        83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k  158 (450)
T 3fef_A           83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYK  158 (450)
T ss_dssp             CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHH
T ss_pred             cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHH
Confidence            9642           223333211                        2333446899999997755444444444

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.84  E-value=0.001  Score=62.23  Aligned_cols=64  Identities=14%  Similarity=0.157  Sum_probs=50.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC-----CCccccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN-----LNYKYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-----~~~~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+..++.++.. ++++. ++|+++...     .+...+.+++++++  +.|+|++++|....
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSH   78 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            5899999999999999999877 67765 678765431     23445678999987  79999999996543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.83  E-value=0.0039  Score=63.90  Aligned_cols=110  Identities=17%  Similarity=0.163  Sum_probs=76.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC--------------------CC-------ccccCCHHHhcccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN--------------------LN-------YKYYPNLIDLASNCQ  201 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------------~~-------~~~~~~l~el~~~aD  201 (317)
                      ++|||||.|.||+.+|..+...|+.|..+|.+++..                    ..       .....++ +.+++||
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aD  395 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD  395 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSCS
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhCC
Confidence            699999999999999999999999999999875321                    00       0012233 4578999


Q ss_pred             EEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102          202 ILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF  262 (317)
Q Consensus       202 vV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~  262 (317)
                      +|+=++|-+-+.+.-+-++.=+.++++++|-.-.++  +....|.+.+. .+-+.+++=.|
T Consensus       396 lVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFf  453 (742)
T 3zwc_A          396 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFF  453 (742)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECC
T ss_pred             EEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-Ccccccccccc
Confidence            999999988887765556666678999998544333  44445655542 33333455444

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.80  E-value=0.0033  Score=56.70  Aligned_cols=102  Identities=15%  Similarity=0.160  Sum_probs=65.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------CccccCCHHHhcccCCEEEEeccCChhh----hc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------NYKYYPNLIDLASNCQILVVACSLTEET----QH  215 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~~~~t----~~  215 (317)
                      .++++.|+|.|.+|+.++..|...|+ +|.+++|+..+..      +.....++.  +.++|+|+.++|..-..    ..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            46799999999999999999999998 7999999854321      111111222  46899999999965321    11


Q ss_pred             -cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          216 -IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       216 -li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                       .+..+.   ++++.+++|+.-.+ ... .|.+..++..+.
T Consensus       196 ~~~~~~~---l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~  231 (271)
T 1npy_A          196 LAFPKAF---IDNASVAFDVVAMP-VET-PFIRYAQARGKQ  231 (271)
T ss_dssp             CSSCHHH---HHHCSEEEECCCSS-SSC-HHHHHHHHTTCE
T ss_pred             CCCCHHH---cCCCCEEEEeecCC-CCC-HHHHHHHHCCCE
Confidence             133233   45577888887643 233 454544444443

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.79  E-value=0.011  Score=54.85  Aligned_cols=92  Identities=10%  Similarity=0.076  Sum_probs=69.5

Q ss_pred             cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|.+|+++|=|  ++.++.+..+..+|++|.+..|..-...              +  .....++++.++++|+|..-
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            4889999999996  9999999999999999988876432111              1  22357899999999998773


Q ss_pred             ccC--------Chh-----hhccccHHHHhcc-CCCcEEEEeCC
Q 042102          207 CSL--------TEE-----TQHIVNRQVINAL-GPKGVLINIGR  236 (317)
Q Consensus       207 lp~--------~~~-----t~~li~~~~l~~m-k~gavlVN~~r  236 (317)
                      .=.        ..+     ....++.+.++.+ ||+++|.-+.-
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence            320        111     1245789999999 99999999854

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.77  E-value=0.0025  Score=58.03  Aligned_cols=103  Identities=13%  Similarity=0.102  Sum_probs=68.6

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEE-EeCCCCC--CCCCccccCCHHHhcc--cCCEEEEeccCChhhhccccHHH
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIG-YNSRTEK--PNLNYKYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~~--~~~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      .++|+|+|+ |++|+.+++.++..|++++ ..++...  ...+...+.+++++..  .+|++++++|... +...+. +.
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~-~~~~~~-ea   84 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPA-AADAAL-EA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHH-HHHHHH-HH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHHH-HHHHHH-HH
Confidence            468999999 9999999999998899853 5666541  2234555778999988  8999999998432 232332 22


Q ss_pred             HhccCCCcE-EEEeCCCc-ccCHHHHHHHHHhCCce
Q 042102          222 INALGPKGV-LINIGRGL-LVDEHELVSALLQGRLG  255 (317)
Q Consensus       222 l~~mk~gav-lVN~~rg~-~vd~~aL~~al~~g~i~  255 (317)
                      .   +.|.- +|..+.|= .-+++.+.+..++..+.
T Consensus        85 ~---~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           85 A---HAGIPLIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             H---HTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             H---HCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2   22322 44455442 23456888888877665

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.76  E-value=0.0011  Score=61.34  Aligned_cols=64  Identities=28%  Similarity=0.436  Sum_probs=49.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC------CCc-cccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN------LNY-KYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~------~~~-~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+..++.++.. ++++. ++|+++...      .+. ..+.+++++++  ++|+|++++|....
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   77 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTH   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcch
Confidence            4899999999999999999875 67765 678875432      122 24678999988  89999999996543

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.75  E-value=0.002  Score=59.04  Aligned_cols=87  Identities=13%  Similarity=0.205  Sum_probs=56.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----------CCccccCCHHHhcccCCEEEEeccCCh---
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----------LNYKYYPNLIDLASNCQILVVACSLTE---  211 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----------~~~~~~~~l~el~~~aDvV~~~lp~~~---  211 (317)
                      .++|+|||.|.+|..++..+...|.  +|..+|...+..           .......++ +.++.||+|+.+.....   
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            3699999999999999999877777  899999876411           011122466 67899999999963211   


Q ss_pred             -------hhhccccHHH---HhccCCCcEEEEeCC
Q 042102          212 -------ETQHIVNRQV---INALGPKGVLINIGR  236 (317)
Q Consensus       212 -------~t~~li~~~~---l~~mk~gavlVN~~r  236 (317)
                             .+..++ ++.   +....|++++++++-
T Consensus        93 tR~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMF-RALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHH-HHHHHHHHHHTTTCEEEECSS
T ss_pred             CHHHHHHHHHHHH-HHHHHHHHHhCCCeEEEEcCC
Confidence                   111111 122   223348999999876

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.75  E-value=0.0014  Score=59.94  Aligned_cols=91  Identities=11%  Similarity=0.225  Sum_probs=58.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC--------Cc------c-cc-CCHHHhcccCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL--------NY------K-YY-PNLIDLASNCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------~~------~-~~-~~l~el~~~aDvV~~~lp  208 (317)
                      ..++|+|||.|.+|..++..|...|.  +|..+|++.....        +.      . .. .+ .+.++.||+|+++++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~   84 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAG   84 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCC
Confidence            34689999999999999999998888  9999998652210        00      0 01 13 356789999999985


Q ss_pred             CChh---hh--------cccc--HHHHhccCCCcEEEEeCCCc
Q 042102          209 LTEE---TQ--------HIVN--RQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       209 ~~~~---t~--------~li~--~~~l~~mk~gavlVN~~rg~  238 (317)
                      ....   ++        .++.  .+.+....+++++|+++-|-
T Consensus        85 ~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           85 PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            3321   00        0110  11122236789999886653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.69  E-value=0.0012  Score=57.67  Aligned_cols=84  Identities=11%  Similarity=0.082  Sum_probs=56.6

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccc----cCC---HHHh-cccCCEEEEeccCChhhhc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKY----YPN---LIDL-ASNCQILVVACSLTEETQH  215 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~----~~~---l~el-~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+++.|+|+|.+|+.+++.|...|. |.+.++++...    .+...    ..+   ++++ +.++|.|++++|.+..+  
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n--   85 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET--   85 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH--
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH--
Confidence            4589999999999999999999999 99999875421    11111    122   3344 78999999998865443  


Q ss_pred             cccHHHHhccCCC-cEEEEe
Q 042102          216 IVNRQVINALGPK-GVLINI  234 (317)
Q Consensus       216 li~~~~l~~mk~g-avlVN~  234 (317)
                      +.-....+.+.++ .+++.+
T Consensus        86 ~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           86 IHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             HHHHHHHHHHCSSSEEEEEC
T ss_pred             HHHHHHHHHHCCCCeEEEEE
Confidence            3334455566666 344443

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.0011  Score=64.53  Aligned_cols=89  Identities=18%  Similarity=0.209  Sum_probs=56.8

Q ss_pred             ccccccCCeEEEEecChhHHHHHHHHhhC-CCEEEEeCCCCCCC------CCcc--c--c---CCHHHhcccCCEEEEec
Q 042102          142 MTTKFTGKSVGILGMGRIGTAIAKRAEAF-DCIIGYNSRTEKPN------LNYK--Y--Y---PNLIDLASNCQILVVAC  207 (317)
Q Consensus       142 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~------~~~~--~--~---~~l~el~~~aDvV~~~l  207 (317)
                      .+..+.+++|+|+|.|.+|+.+++.|... |.+|.+++|+..+.      .+..  .  .   .++.++++.+|+|+.++
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            45578899999999999999999999887 78999999875321      1111  0  1   24567788999999999


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      |..... . +..   ..++.|..+++++
T Consensus        97 p~~~~~-~-v~~---a~l~~g~~vvd~~  119 (467)
T 2axq_A           97 PYTFHP-N-VVK---SAIRTKTDVVTSS  119 (467)
T ss_dssp             CGGGHH-H-HHH---HHHHHTCEEEECS
T ss_pred             chhhhH-H-HHH---HHHhcCCEEEEee
Confidence            864221 1 111   2234566666654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.69  E-value=0.0019  Score=57.45  Aligned_cols=87  Identities=16%  Similarity=0.231  Sum_probs=59.2

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC------C-------C-----------------Cc--cc-
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP------N-------L-----------------NY--KY-  189 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~------~-------~-----------------~~--~~-  189 (317)
                      ..|++++|.|+|+|.+|..+++.|...|. ++.++|...-.      .       .                 ..  .. 
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999999999999999998 67777653210      0       0                 00  00 


Q ss_pred             ---c--CCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102          190 ---Y--PNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       190 ---~--~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~  234 (317)
                         .  .++.++++++|+|+.+.. +.+++..+++...+.   +.-+|+.
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~  149 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITA  149 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEE
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEE
Confidence               0  134567888999988876 566777777655442   3335554

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.66  E-value=0.0018  Score=60.92  Aligned_cols=61  Identities=21%  Similarity=0.356  Sum_probs=46.4

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC----cc---cc---CCHHHhcccCCEEEE
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN----YK---YY---PNLIDLASNCQILVV  205 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----~~---~~---~~l~el~~~aDvV~~  205 (317)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+.+.....    ..   ..   ..+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            467899999999999999999999999999998876543211    00   11   225677888998865

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.65  E-value=0.025  Score=51.89  Aligned_cols=91  Identities=10%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCC-CCC---------CccccCCHHHhcccCCEEEEec----cC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEK-PNL---------NYKYYPNLIDLASNCQILVVAC----SL  209 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~-~~~---------~~~~~~~l~el~~~aDvV~~~l----p~  209 (317)
                      .+.|++|++||= +++.++.+..+..||++|.+..|..- +..         ......+++|.++++|+|..-.    ..
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            378999999996 57888888899999999988776321 111         1223578999999999998743    11


Q ss_pred             ---Ch-----hhhccccHHHHhccCCCcEEEEeC
Q 042102          210 ---TE-----ETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       210 ---~~-----~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                         .+     -....++.+.++.+|++++|.-+.
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence               00     023457899999999999999886

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.64  E-value=0.0012  Score=63.14  Aligned_cols=85  Identities=18%  Similarity=0.177  Sum_probs=58.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc--c--cCC---HHHh-cccCCEEEEeccCChhhh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK--Y--YPN---LIDL-ASNCQILVVACSLTEETQ  214 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~--~--~~~---l~el-~~~aDvV~~~lp~~~~t~  214 (317)
                      +.+|.|+|+|.+|+.+++.|+..|..|++.|+++...     .+..  .  ..+   |.++ +.+||+|+++++....+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            4579999999999999999999999999998875421     1211  1  122   4444 788999999998765443


Q ss_pred             ccccHHHHhccCCCcEEEEe
Q 042102          215 HIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~  234 (317)
                        .-....+.+.|...+|--
T Consensus        84 --~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           84 --QLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             --HHHHHHHHHCTTCEEEEE
T ss_pred             --HHHHHHHHhCCCCeEEEE
Confidence              233455566676555443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.63  E-value=0.0032  Score=57.97  Aligned_cols=64  Identities=16%  Similarity=0.247  Sum_probs=48.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEE-EEeCCCCCCCC------Cc-cccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCII-GYNSRTEKPNL------NY-KYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~~------~~-~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+..++.++.. ++++ .++|+++....      +. ..+.+++++++  +.|+|++++|....
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   80 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDH   80 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence            5899999999999999988765 4565 47787765432      22 24678999998  79999999996543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.63  E-value=0.0024  Score=58.83  Aligned_cols=93  Identities=16%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC---------------ccccCCHHHhcccCCEEEEeccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN---------------YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      .++|+|||.|.||..++..++..|.  +|..+|+..+...+               .....+..+.++.||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            3699999999999999999976664  89999986532110               000123456799999999997654


Q ss_pred             hhh-----------hcccc--HHHHhccCCCcEEEEeCCCcccCH
Q 042102          211 EET-----------QHIVN--RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       211 ~~t-----------~~li~--~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      ..-           ..++.  .+.+....|++++++++.  .+|.
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~  128 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDI  128 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHH
T ss_pred             CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHH
Confidence            310           01110  112233358899999744  5544

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.61  E-value=0.026  Score=52.05  Aligned_cols=97  Identities=13%  Similarity=0.172  Sum_probs=71.2

Q ss_pred             cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|.+|+++|=|  ++.++.+..+..||++|.+..|..-...              +  .....+++++++++|+|..-
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            3789999999996  9999999999999999998876432111              1  22357899999999998873


Q ss_pred             ccC-------Chh-----hhccccHHHHhcc-CCCcEEEEeC---CCcccC
Q 042102          207 CSL-------TEE-----TQHIVNRQVINAL-GPKGVLINIG---RGLLVD  241 (317)
Q Consensus       207 lp~-------~~~-----t~~li~~~~l~~m-k~gavlVN~~---rg~~vd  241 (317)
                      .=.       .++     ....++++.++.+ ||+++|.-+.   ||.=|+
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~  294 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVT  294 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBC
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccC
Confidence            221       011     1345789999999 9999999986   354444

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.60  E-value=0.011  Score=54.69  Aligned_cols=92  Identities=9%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCC--------------CC--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPN--------------LN--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|.+|++||=|  ++.++.+..+..+|++|.+..|..-..              .+  .....++++.++++|+|..-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            4889999999986  999999999999999998887643211              11  22357899999999999873


Q ss_pred             ccC-----C---hh-----hhccccHHHHhcc-CCCcEEEEeCC
Q 042102          207 CSL-----T---EE-----TQHIVNRQVINAL-GPKGVLINIGR  236 (317)
Q Consensus       207 lp~-----~---~~-----t~~li~~~~l~~m-k~gavlVN~~r  236 (317)
                      .=.     .   .+     ....++++.++.+ ||+++|.-+.-
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  275 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence            321     0   01     1245789999999 99999999854

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.60  E-value=0.0025  Score=55.41  Aligned_cols=92  Identities=17%  Similarity=0.020  Sum_probs=61.9

Q ss_pred             ccCCeEEEEe-cChhHHHHHHHHhhCC-CEEEEeCCCCCCCC-----Cc-------cccCCHHHhcccCCEEEEeccCCh
Q 042102          146 FTGKSVGILG-MGRIGTAIAKRAEAFD-CIIGYNSRTEKPNL-----NY-------KYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~-----~~-------~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ...++|.|.| .|.||+.+++.|...| ++|.+.+|+.....     ..       ....+++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            3457899999 6999999999999999 89999888754321     11       112246678899999998876543


Q ss_pred             hhhccccHHHHhccCC--CcEEEEeCCCcc
Q 042102          212 ETQHIVNRQVINALGP--KGVLINIGRGLL  239 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~--gavlVN~~rg~~  239 (317)
                      ...  ..+..++.|++  ...||++|....
T Consensus       101 ~~~--~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LDI--QANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HHH--HHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hhH--HHHHHHHHHHHcCCCEEEEEeccee
Confidence            211  12345555543  246899987443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.57  E-value=0.0053  Score=52.58  Aligned_cols=86  Identities=17%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             CeEEEEe-cChhHHHHHHHHh-hCCCEEEEeCCCCC-CC-------CCcc-------ccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILG-MGRIGTAIAKRAE-AFDCIIGYNSRTEK-PN-------LNYK-------YYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~-~~G~~V~~~~~~~~-~~-------~~~~-------~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      |++.|.| .|.||+.+++.|. ..|++|.+.+|++. ..       ....       ...++.++++.+|+|+.+.....
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            5799999 5999999999999 89999999888755 21       1111       11345678899999998876531


Q ss_pred             hhhccccHHHHhccCC-C-cEEEEeCCCc
Q 042102          212 ETQHIVNRQVINALGP-K-GVLINIGRGL  238 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~-g-avlVN~~rg~  238 (317)
                       ..   .+..++.|++ | ..||++|...
T Consensus        86 -~~---~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           86 -SD---MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             -HH---HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             -hh---HHHHHHHHHhcCCCeEEEEeece
Confidence             11   4455555643 2 3688887544

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.57  E-value=0.0033  Score=58.26  Aligned_cols=64  Identities=14%  Similarity=0.236  Sum_probs=46.0

Q ss_pred             CeEEEEecChhHHH-HHH-HHh-hCCCEEE-EeCCCCCCC------CCccccCCHHHhccc--CCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTA-IAK-RAE-AFDCIIG-YNSRTEKPN------LNYKYYPNLIDLASN--CQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~-~l~-~~G~~V~-~~~~~~~~~------~~~~~~~~l~el~~~--aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+. .+. .+. .-++++. ++|+++...      .+...+.+++++++.  .|+|++++|....
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   78 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHH
Confidence            47999999999996 455 334 3467765 788876432      123346789999886  8999999996543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.56  E-value=0.0045  Score=57.63  Aligned_cols=102  Identities=16%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEE-EEeCCCCCCC------CC----ccccCCHHHhcc--cCCEEEEeccCChhhh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCII-GYNSRTEKPN------LN----YKYYPNLIDLAS--NCQILVVACSLTEETQ  214 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~------~~----~~~~~~l~el~~--~aDvV~~~lp~~~~t~  214 (317)
                      .+|||||+|.||+..++.++.. ++++ .+++++....      .+    ...+.+++++++  ++|+|++++|..... 
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-   85 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-   85 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH-
Confidence            4899999999999999988875 5665 5778765421      12    234578999986  599999999954332 


Q ss_pred             ccccHHHHhccCCCcEEEEeC--CCcccCHHHHHHHHHhCCce
Q 042102          215 HIVNRQVINALGPKGVLINIG--RGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~--rg~~vd~~aL~~al~~g~i~  255 (317)
                          +-....++.|.-++.-.  --.+-+.+.|.++.++..+.
T Consensus        86 ----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           86 ----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             ----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence                22234466665443321  12223456788888777665

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.56  E-value=0.0049  Score=56.53  Aligned_cols=92  Identities=21%  Similarity=0.236  Sum_probs=59.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC---------------C--ccccCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL---------------N--YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---------------~--~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|||.|.+|..++..+...|. +|..+|...+...               .  .....+. +.++.||+|+++.+..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999998886 8989997653210               0  1112456 7789999999997532


Q ss_pred             hh-----------hhcccc--HHHHhccCCCcEEEEeCCCcccCHH
Q 042102          211 EE-----------TQHIVN--RQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       211 ~~-----------t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ..           +..++.  .+.+....|++++++++  ..+|.-
T Consensus        82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t--NPv~~~  125 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN--NPLDAM  125 (309)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC--SSHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC--CchHHH
Confidence            21           111110  11233335899999974  345443

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.55  E-value=0.0044  Score=57.07  Aligned_cols=93  Identities=13%  Similarity=0.226  Sum_probs=60.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC---------------Ccccc-CCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL---------------NYKYY-PNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~~~~~-~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|+|.|.||..+|..+...|.  +|..+|..+....               ..... .+..+.++.||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999987776  8999998764311               01111 24568899999999986543


Q ss_pred             hh---hh-ccc--c-------HHHHhccCCCcEEEEeCCCcccCHH
Q 042102          211 EE---TQ-HIV--N-------RQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       211 ~~---t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ..   ++ .++  |       .+.+....|++++++++  .++|.-
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~  124 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLDVM  124 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHHHH
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--CchhHH
Confidence            21   11 111  1       12334456899999997  455443

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.55  E-value=0.0018  Score=56.50  Aligned_cols=62  Identities=15%  Similarity=0.134  Sum_probs=41.8

Q ss_pred             CeEEEEecChhHHHHHHH--HhhCCCEE-EEeCCCCCCCC----Cc--cccCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKR--AEAFDCII-GYNSRTEKPNL----NY--KYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~--l~~~G~~V-~~~~~~~~~~~----~~--~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++++|||.|++|+.+++.  ....|+++ .++|.++....    +.  ....++++++++.|++++++|..
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~  156 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAV  156 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCch
Confidence            479999999999999994  44567875 46776654321    11  12467888887779999999953

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.53  E-value=0.0026  Score=58.97  Aligned_cols=96  Identities=20%  Similarity=0.210  Sum_probs=61.3

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC--------------CccccCCHHHhcccCCEEEEeccC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL--------------NYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      -.+++|+|||.|.||..+|..+...|.  ++..+|.......              ......+..+.++.||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            356799999999999999999987776  8999998643210              111123346789999999998643


Q ss_pred             Chh---hh-ccc--c-------HHHHhccCCCcEEEEeCCCcccCHH
Q 042102          210 TEE---TQ-HIV--N-------RQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       210 ~~~---t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ...   ++ .++  |       .+.+....|++++++++  .++|.-
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi~  131 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDIL  131 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECS--SSHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHHH
Confidence            211   12 122  1       12334456899999996  455543

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.53  E-value=0.0019  Score=59.82  Aligned_cols=64  Identities=19%  Similarity=0.264  Sum_probs=49.3

Q ss_pred             CeEEEEecChhHHHHHHHHh-h-CCCEEE-EeCCCCCCC------CC--ccccCCHHHhccc--CCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAE-A-FDCIIG-YNSRTEKPN------LN--YKYYPNLIDLASN--CQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~-~-~G~~V~-~~~~~~~~~------~~--~~~~~~l~el~~~--aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+..++.++ . -++++. ++|+++...      .+  ...+.+++++++.  .|+|++++|....
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   79 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH   79 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence            47999999999999999998 5 467765 778765431      12  3456789999876  9999999996543

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.52  E-value=0.014  Score=53.20  Aligned_cols=92  Identities=18%  Similarity=0.204  Sum_probs=69.1

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhC-CCEEEEeCCCCCCC-------CC--ccccCCHHHhcccCCEEEEeccCCh
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAF-DCIIGYNSRTEKPN-------LN--YKYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~-G~~V~~~~~~~~~~-------~~--~~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      .+.|.+|+++|=   |++.++.+..+..+ |++|.+..+..-..       .+  .....+++++++++|+|..-.=-.+
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            378999999998   59999999999999 99998887643211       12  2234689999999999877543321


Q ss_pred             ------h-h----hccccHHHHhccCCCcEEEEeCC
Q 042102          212 ------E-T----QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       212 ------~-t----~~li~~~~l~~mk~gavlVN~~r  236 (317)
                            + .    ...++++.++.+||+++|.-+.-
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP  261 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP  261 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence                  1 1    24578899999999999988863

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.49  E-value=0.006  Score=55.64  Aligned_cols=93  Identities=19%  Similarity=0.220  Sum_probs=62.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC---------------C--ccccCCHHHhcccCCEEEEeccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL---------------N--YKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~--~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ++|+|+|.|.+|..+|..|...|.  +|..+|+.++...               .  .....+ .+.++.||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            489999999999999999987777  8999998653210               0  011235 7889999999998654


Q ss_pred             Chh---hh-ccc--c-------HHHHhccCCCcEEEEeCCCcccCHHH
Q 042102          210 TEE---TQ-HIV--N-------RQVINALGPKGVLINIGRGLLVDEHE  244 (317)
Q Consensus       210 ~~~---t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd~~a  244 (317)
                      ...   ++ .++  |       .+.+....|++++++++  .++|.-.
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t  125 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMT  125 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHH
Confidence            311   11 111  1       12344457899999997  5566543

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.49  E-value=0.0027  Score=59.25  Aligned_cols=65  Identities=18%  Similarity=0.284  Sum_probs=50.1

Q ss_pred             CCeEEEEecChhHHHHHHHHh-h-CCCEEE-EeCCCCCCC------CC--ccccCCHHHhcc--cCCEEEEeccCChh
Q 042102          148 GKSVGILGMGRIGTAIAKRAE-A-FDCIIG-YNSRTEKPN------LN--YKYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~-~-~G~~V~-~~~~~~~~~------~~--~~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      ..+|||||+|.||+..++.++ . -++++. ++|+++...      .+  ...+.+++++++  +.|+|++++|....
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            458999999999999999987 4 367765 788876542      12  345678999987  48999999996543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.48  E-value=0.0015  Score=61.20  Aligned_cols=63  Identities=19%  Similarity=0.233  Sum_probs=45.6

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----------CCccccCCHHHhcccCCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----------LNYKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----------~~~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      +.++|+|+|.|.+|+.+++.|+. ..+|.+.+++.+..           .+.....++.++++++|+|+.++|..
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~   88 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF   88 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence            44589999999999999999975 46788777654321           01111234778899999999999854

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.46  E-value=0.0091  Score=55.18  Aligned_cols=90  Identities=16%  Similarity=0.240  Sum_probs=59.4

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC---------------Ccc--ccCCHHHhcccCCEEEEec
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL---------------NYK--YYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---------------~~~--~~~~l~el~~~aDvV~~~l  207 (317)
                      ...++|+|||.|.+|..+|..+...|. +|..+|..++...               ...  ...+. +.++.||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            346799999999999999999988787 9999998764310               111  12344 7899999999986


Q ss_pred             cCC--hh-hhc-cc--cH-------HHHhccCCCcEEEEeCC
Q 042102          208 SLT--EE-TQH-IV--NR-------QVINALGPKGVLINIGR  236 (317)
Q Consensus       208 p~~--~~-t~~-li--~~-------~~l~~mk~gavlVN~~r  236 (317)
                      +..  +. ++. ++  |.       +.+....|++++++++.
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            432  11 111 11  11       12333458999999974

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.46  E-value=0.0033  Score=58.80  Aligned_cols=86  Identities=22%  Similarity=0.309  Sum_probs=62.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccc---cCC---HHHhcccCCEEEEeccCChhhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKY---YPN---LIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~---~~~---l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .|.+|.|+|.|.||..+++.++.+|++|++.+++....      .+...   ..+   +.++....|+|+-++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            68899999999999999999999999999888765431      22211   122   33344568999888764322  


Q ss_pred             ccccHHHHhccCCCcEEEEeCCC
Q 042102          215 HIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg  237 (317)
                         -+..++.|+++..+|+++..
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCCC
T ss_pred             ---HHHHHHHHhcCCEEEEEccC
Confidence               24567888999999998753

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.46  E-value=0.0075  Score=55.51  Aligned_cols=110  Identities=20%  Similarity=0.240  Sum_probs=65.5

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC--------------ccccCCHHHhcccCCEEEEeccCCh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN--------------YKYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      .++|+|||.|.+|..++..+...|.  +|..+|...+...+              .....+-.+.++.||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            3689999999999999999988887  89999976543210              0011123567999999999987532


Q ss_pred             hhhcc-----c--c-------HHHHhccCCCcEEEEeCCCcccCHHH--HHHH--HHhCCceEE--Eee
Q 042102          212 ETQHI-----V--N-------RQVINALGPKGVLINIGRGLLVDEHE--LVSA--LLQGRLGGA--GLD  260 (317)
Q Consensus       212 ~t~~l-----i--~-------~~~l~~mk~gavlVN~~rg~~vd~~a--L~~a--l~~g~i~ga--~lD  260 (317)
                      . .+.     +  |       .+.+....|+++++++  ...+|.-.  +.+.  +...++.|.  .||
T Consensus        87 k-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           87 K-PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             C-CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            1 111     0  1       1122333689999997  34554433  3232  234466665  256

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.46  E-value=0.0055  Score=59.17  Aligned_cols=97  Identities=21%  Similarity=0.288  Sum_probs=70.0

Q ss_pred             ccccCCeEEEEecC----------hhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEecc
Q 042102          144 TKFTGKSVGILGMG----------RIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       144 ~~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      ..+.|++|+|+|+.          .-...+++.|...|++|.+||+.....     .+.....++++.++.+|.|++++.
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~  397 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTE  397 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSC
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeC
Confidence            45789999999997          668899999999999999999875321     123345678999999999999987


Q ss_pred             CChhhhccccHHHH-hccCCCcEEEEeCCCcccCHHHH
Q 042102          209 LTEETQHIVNRQVI-NALGPKGVLINIGRGLLVDEHEL  245 (317)
Q Consensus       209 ~~~~t~~li~~~~l-~~mk~gavlVN~~rg~~vd~~aL  245 (317)
                      ..+ -+. ++-+.+ +.|+ +.+++|+ |+ +.|.+.+
T Consensus       398 ~~~-f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          398 WDA-FRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CTT-TTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             CHH-hhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            654 222 454444 4465 5678885 54 3555433

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.44  E-value=0.0096  Score=57.95  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=69.5

Q ss_pred             cccCCeEEEEecC----------hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          145 KFTGKSVGILGMG----------RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       145 ~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .+.|++|+|+|+-          .-...+++.|...|++|.+||+............++++.++.+|.|++++...+ .+
T Consensus       350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~-f~  428 (478)
T 3g79_A          350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAGHSA-YS  428 (478)
T ss_dssp             CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSCCHH-HH
T ss_pred             CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecCCHH-HH
Confidence            4689999999974          236889999999999999999876533223345688999999999999987543 23


Q ss_pred             ccccHHH-HhccC-CCcEEEEeCCCcccCHHH
Q 042102          215 HIVNRQV-INALG-PKGVLINIGRGLLVDEHE  244 (317)
Q Consensus       215 ~li~~~~-l~~mk-~gavlVN~~rg~~vd~~a  244 (317)
                      . ++.+. .+.|+ ++.+++|+ |+- .|.+.
T Consensus       429 ~-~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~  457 (478)
T 3g79_A          429 S-LKADWAKKVSAKANPVIIDG-RNV-IEPDE  457 (478)
T ss_dssp             S-CCHHHHHHHHCCSSCEEEES-SSC-SCHHH
T ss_pred             h-hhHHHHHHHhccCCCEEEEC-CCC-CCHHH
Confidence            2 45444 44677 47899994 554 45433

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.43  E-value=0.0054  Score=56.22  Aligned_cols=107  Identities=14%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             ccccCCeEEEE-ec-ChhHHHHHHHHhhCCCEEE-EeCCCCC--CCCCccccCCHHHhcc--cCCEEEEeccCChhhhcc
Q 042102          144 TKFTGKSVGIL-GM-GRIGTAIAKRAEAFDCIIG-YNSRTEK--PNLNYKYYPNLIDLAS--NCQILVVACSLTEETQHI  216 (317)
Q Consensus       144 ~~l~g~~vgIi-G~-G~iG~~~a~~l~~~G~~V~-~~~~~~~--~~~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~l  216 (317)
                      .-+..++++|| |+ |+.|+.+++.++..|++++ ..++...  ...+...+.+++|+.+  ..|++++++|.... ...
T Consensus         9 ~l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~~~~-~~~   87 (305)
T 2fp4_A            9 LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFA-AAA   87 (305)
T ss_dssp             GCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHH-HHH
T ss_pred             HHhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCHHHH-HHH
Confidence            44677899999 99 9999999999999999844 5565431  2234555678999988  89999999995432 222


Q ss_pred             ccHHHHhccCCC-cEEEEeCCCccc-CHHHHHHHHHhC-Cce
Q 042102          217 VNRQVINALGPK-GVLINIGRGLLV-DEHELVSALLQG-RLG  255 (317)
Q Consensus       217 i~~~~l~~mk~g-avlVN~~rg~~v-d~~aL~~al~~g-~i~  255 (317)
                      +. +..   +.| ..+|+.+.|-.. ++..+.+..++. .+.
T Consensus        88 ~~-e~i---~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           88 IN-EAI---DAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             HH-HHH---HTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             HH-HHH---HCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            32 222   223 234666666432 445888888887 665

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.41  E-value=0.0022  Score=59.86  Aligned_cols=64  Identities=14%  Similarity=0.091  Sum_probs=47.8

Q ss_pred             CCeEEEEecChhHHH-HHHHHhhC-CCEEE-EeCCCCCCC-------CCccccCCHHHhcccC--CEEEEeccCCh
Q 042102          148 GKSVGILGMGRIGTA-IAKRAEAF-DCIIG-YNSRTEKPN-------LNYKYYPNLIDLASNC--QILVVACSLTE  211 (317)
Q Consensus       148 g~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~-------~~~~~~~~l~el~~~a--DvV~~~lp~~~  211 (317)
                      ..+|||||+|.||+. .++.++.. ++++. ++|+++...       .....+.+++++++..  |+|++++|...
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   80 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQL   80 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHH
Confidence            358999999999995 88888776 67765 778865432       1223467899999854  99999999543

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.40  E-value=0.0039  Score=57.58  Aligned_cols=63  Identities=11%  Similarity=0.136  Sum_probs=48.6

Q ss_pred             cCCeEEEEecChhHH-HHHHHHhhC-CCEE-EEeCCCCCCCCCccccCCHHHhccc---CCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGT-AIAKRAEAF-DCII-GYNSRTEKPNLNYKYYPNLIDLASN---CQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~-~~a~~l~~~-G~~V-~~~~~~~~~~~~~~~~~~l~el~~~---aDvV~~~lp~~  210 (317)
                      ...+|||||+|.||+ ..++.++.. +++| .++|++.+. .+...+.+++++++.   .|+|++++|..
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-~g~~~~~~~~~ll~~~~~vD~V~i~tp~~   92 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-EGVNSYTTIEAMLDAEPSIDAVSLCMPPQ   92 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-TTSEEESSHHHHHHHCTTCCEEEECSCHH
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-cCCCccCCHHHHHhCCCCCCEEEEeCCcH
Confidence            346899999999998 688888776 6776 467776543 344567899999865   89999999953

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.39  E-value=0.005  Score=52.76  Aligned_cols=91  Identities=13%  Similarity=0.149  Sum_probs=57.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCC----cc-------ccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN----YK-------YYPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----~~-------~~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      ++|.|.| .|.||+.+++.|...|.+|.+.+|+......    ..       ...++.++++.+|+|+.+.........+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~   84 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNNPDI   84 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC------C
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCChhH
Confidence            6899999 5999999999999999999999987653211    11       1224667889999998876544221111


Q ss_pred             c------cHHHHhccCC-C-cEEEEeCCCcc
Q 042102          217 V------NRQVINALGP-K-GVLINIGRGLL  239 (317)
Q Consensus       217 i------~~~~l~~mk~-g-avlVN~~rg~~  239 (317)
                      +      ....++.+++ + ..||.+|....
T Consensus        85 ~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~  115 (227)
T 3dhn_A           85 YDETIKVYLTIIDGVKKAGVNRFLMVGGAGS  115 (227)
T ss_dssp             CSHHHHHHHHHHHHHHHTTCSEEEEECCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeCChhh
Confidence            1      1223333332 2 36888877543

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.39  E-value=0.023  Score=52.27  Aligned_cols=97  Identities=11%  Similarity=0.175  Sum_probs=71.8

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEec
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~l  207 (317)
                      .+.|.+|+++|= +++.++.+..+..+|++|.+..+..-...              +  .....++++.++++|+|..-.
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            378999999997 89999999999999999988876432111              1  223578999999999998743


Q ss_pred             cC-------Chh-----hhccccHHHHhccCCCcEEEEeC---CCcccC
Q 042102          208 SL-------TEE-----TQHIVNRQVINALGPKGVLINIG---RGLLVD  241 (317)
Q Consensus       208 p~-------~~~-----t~~li~~~~l~~mk~gavlVN~~---rg~~vd  241 (317)
                      =.       .++     ....++++.++.+||+++|.-+.   ||.=|+
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~  280 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVT  280 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBC
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccC
Confidence            21       111     12457899999999999999986   354444

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.36  E-value=0.041  Score=50.72  Aligned_cols=92  Identities=13%  Similarity=0.119  Sum_probs=67.5

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------CccccCCHHHhcccCCEEEEec
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------NYKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDvV~~~l  207 (317)
                      .+.|.+|++||=| ++.++.+..+..||++|.+..+..-...                ......+++++++++|+|..-+
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~  231 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT  231 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEec
Confidence            3789999999985 4888888888899999988876432110                1233578999999999998843


Q ss_pred             ----cCChh--------hhccccHHHHhccCCCcEEEEeCC
Q 042102          208 ----SLTEE--------TQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       208 ----p~~~~--------t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                          ....+        ....++++.++.+|++++|.-+.-
T Consensus       232 w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP  272 (321)
T 1oth_A          232 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP  272 (321)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred             cccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCC
Confidence                11111        114568999999999999999863

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.32  E-value=0.013  Score=54.09  Aligned_cols=94  Identities=17%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC---------------Ccc-c-cCCHHHhcccCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL---------------NYK-Y-YPNLIDLASNCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---------------~~~-~-~~~l~el~~~aDvV~~~lp  208 (317)
                      ..++|+|||.|.+|..+|..+...|+ +|..+|..+....               ... . ..+ .+.++.||+|+++.+
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence            35799999999999999999987776 9999998764310               111 1 123 478999999999864


Q ss_pred             CC--hh-hhc-cc--cH-------HHHhccCCCcEEEEeCCCcccCHH
Q 042102          209 LT--EE-TQH-IV--NR-------QVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       209 ~~--~~-t~~-li--~~-------~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ..  +. ++. ++  |.       +.+....|++++++++  .++|.-
T Consensus        83 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~  128 (321)
T 3p7m_A           83 VPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIM  128 (321)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHH
T ss_pred             cCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHH
Confidence            32  11 111 11  11       1233345899999994  555544

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.32  E-value=0.0089  Score=55.32  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=69.6

Q ss_pred             CeEEEEecChhHHHHHHHHhh---------CCCEEE-EeCCCCCCCCC-------------ccccC--CHHHhcc--cCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEA---------FDCIIG-YNSRTEKPNLN-------------YKYYP--NLIDLAS--NCQ  201 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~---------~G~~V~-~~~~~~~~~~~-------------~~~~~--~l~el~~--~aD  201 (317)
                      .+|||+|+|.||+.+++.+..         .+.+|. +++++......             ...+.  ++++++.  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            389999999999999999875         467765 56665322110             11223  8888885  589


Q ss_pred             EEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102          202 ILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG  255 (317)
Q Consensus       202 vV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~  255 (317)
                      +|+.++|....... .-+-....++.|.-+|...-+.+. +.+.|.++.++.+..
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999996543221 123345667888887776555543 566788877777765

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.32  E-value=0.0022  Score=59.53  Aligned_cols=93  Identities=13%  Similarity=0.088  Sum_probs=60.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      ..++|+|||.|.||..+|..+...|+  +|..+|...+...              .  .....+.++ ++.||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999987787  8999997643210              0  011235555 899999999854


Q ss_pred             CChh---hh-ccc--c-------HHHHhccCCCcEEEEeCCCcccCH
Q 042102          209 LTEE---TQ-HIV--N-------RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       209 ~~~~---t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      ....   ++ .++  |       .+.+....|++++++++  ..+|.
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt--NPvdi  143 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP--ELGTD  143 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHH
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC--CccHH
Confidence            3211   11 111  1       12334457899999987  34443

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.31  E-value=0.004  Score=60.65  Aligned_cols=110  Identities=12%  Similarity=0.163  Sum_probs=69.6

Q ss_pred             CCeEEEEecChhH--HHHHHHHh---hC-CCEEEEeCCCCCCC---------------CC--ccccCCHHHhcccCCEEE
Q 042102          148 GKSVGILGMGRIG--TAIAKRAE---AF-DCIIGYNSRTEKPN---------------LN--YKYYPNLIDLASNCQILV  204 (317)
Q Consensus       148 g~~vgIiG~G~iG--~~~a~~l~---~~-G~~V~~~~~~~~~~---------------~~--~~~~~~l~el~~~aDvV~  204 (317)
                      .++|+|||.|.+|  .++|..+.   ++ |.+|..+|+..+..               ..  .....++++.++.||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            4689999999975  55566553   34 78999999876421               01  112357888899999999


Q ss_pred             EeccCCh---------------------hhh-------cccc-----------HHHHhccCCCcEEEEeCCCcccCHHHH
Q 042102          205 VACSLTE---------------------ETQ-------HIVN-----------RQVINALGPKGVLINIGRGLLVDEHEL  245 (317)
Q Consensus       205 ~~lp~~~---------------------~t~-------~li~-----------~~~l~~mk~gavlVN~~rg~~vd~~aL  245 (317)
                      ++.|...                     +|.       |++-           .+.+....|++++||++-.--+-..++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997411                     110       1110           123444568999999987554445555


Q ss_pred             HHHHHhCCceEEE
Q 042102          246 VSALLQGRLGGAG  258 (317)
Q Consensus       246 ~~al~~g~i~ga~  258 (317)
                      .+ +...++.|.+
T Consensus       163 ~k-~p~~rviG~c  174 (480)
T 1obb_A          163 TR-TVPIKAVGFC  174 (480)
T ss_dssp             HH-HSCSEEEEEC
T ss_pred             HH-CCCCcEEecC
Confidence            44 5555666653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.30  E-value=0.0025  Score=61.60  Aligned_cols=64  Identities=16%  Similarity=0.104  Sum_probs=47.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CC-cc----cc---CCHHHhcccCCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LN-YK----YY---PNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~-~~----~~---~~l~el~~~aDvV~~~lp~~  210 (317)
                      .+++|+|+|.|.||+.+++.|...|.+|.+++|+....      .+ ..    ..   .++.++++++|+|+.+.|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            36899999999999999999999999999988864321      01 10    11   24557788999999999864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.29  E-value=0.0045  Score=53.61  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=49.7

Q ss_pred             cccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCc-c-----ccCCHHHhcccCCEEEEeccCC
Q 042102          143 TTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNY-K-----YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~-~-----~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ...+.|++|.|.|. |.||+.+++.|...|++|.+.+|+....     .+. .     ...++.+.+..+|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            45689999999998 9999999999999999999998875432     111 1     1145678889999999887654

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.25  E-value=0.017  Score=54.63  Aligned_cols=94  Identities=12%  Similarity=0.056  Sum_probs=66.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh---
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN---  223 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~---  223 (317)
                      ...++-|+|.|.+|+.+++.++.+|++|.++|..+....        .+-+..+|-++...|  .+   .+..  +.   
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~--------~~~fp~a~~~~~~~p--~~---~~~~--~~~~~  267 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFAT--------TARFPTADEVVVDWP--HR---YLAA--QAEAG  267 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSC--------TTTCSSSSEEEESCH--HH---HHHH--HHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhcc--------cccCCCceEEEeCCh--HH---HHHh--hcccc
Confidence            345899999999999999999999999999987654221        122345665554444  11   1111  11   


Q ss_pred             ccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .+.+++.+|=+.++.-.|...|..+|+++...
T Consensus       268 ~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~  299 (386)
T 2we8_A          268 AIDARTVVCVLTHDPKFDVPLLEVALRLPDIA  299 (386)
T ss_dssp             CCCTTCEEEECCCCHHHHHHHHHHHTTSSCCS
T ss_pred             CCCCCcEEEEEECChHhHHHHHHHHhcCCCCC
Confidence            15678888888899889999999999887333

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.25  E-value=0.004  Score=58.07  Aligned_cols=64  Identities=13%  Similarity=0.130  Sum_probs=48.3

Q ss_pred             CeEEEEecChhHHH-HHHHHhhC-CCEEE-EeCCCCCCCC----CccccCCHHHhccc--CCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAF-DCIIG-YNSRTEKPNL----NYKYYPNLIDLASN--CQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~----~~~~~~~l~el~~~--aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++....    +...+.+++++++.  .|+|++++|....
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   78 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTH   78 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence            58999999999997 67777765 67764 7787764321    23346789999987  8999999996543

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.23  E-value=0.0046  Score=57.40  Aligned_cols=64  Identities=14%  Similarity=0.112  Sum_probs=48.6

Q ss_pred             CeEEEEecChhHHH-HHHHHhhC-CCEEE-EeCCCCCCC----CCccccCCHHHhccc--CCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAF-DCIIG-YNSRTEKPN----LNYKYYPNLIDLASN--CQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~----~~~~~~~~l~el~~~--aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++...    .+...+.+++++++.  .|+|++++|....
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   80 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTH   80 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence            58999999999997 77777766 67764 778765421    133456789999876  9999999997654

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.23  E-value=0.011  Score=54.15  Aligned_cols=92  Identities=17%  Similarity=0.113  Sum_probs=67.5

Q ss_pred             cccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccC
Q 042102          145 KFTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       145 ~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      .+.|.+|++||=|   ++.++.+..+..||++|.+..+..-...          +  .....+++++++++|+|..-.=-
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            3789999999984   8999999999999999988876432111          2  22346899999999998774321


Q ss_pred             C------hhh-----hccccHHHHhccCCCcEEEEeCC
Q 042102          210 T------EET-----QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 ~------~~t-----~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      .      ++-     ...++++.++.+||+++|.-+.-
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP  269 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLP  269 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSC
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCC
Confidence            1      111     23467888888899999888763

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.23  E-value=0.0045  Score=59.38  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=63.2

Q ss_pred             CCeEEEEecChhHH-HHHHHHhhC-CCEE-EEeCCCCCCC------CCcc-----ccCCHHHhcc--cCCEEEEeccCCh
Q 042102          148 GKSVGILGMGRIGT-AIAKRAEAF-DCII-GYNSRTEKPN------LNYK-----YYPNLIDLAS--NCQILVVACSLTE  211 (317)
Q Consensus       148 g~~vgIiG~G~iG~-~~a~~l~~~-G~~V-~~~~~~~~~~------~~~~-----~~~~l~el~~--~aDvV~~~lp~~~  211 (317)
                      -.+|||||+|.||+ ..++.++.. ++++ .++|++....      .+..     .+.+++++++  +.|+|++++|...
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~  162 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  162 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence            35899999999997 899988765 5675 5788765421      1221     3678999987  7999999999654


Q ss_pred             hhhccccHHHHhccCCCc-EEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          212 ETQHIVNRQVINALGPKG-VLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~ga-vlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ...     -....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus       163 h~~-----~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  203 (433)
T 1h6d_A          163 HAE-----FAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  203 (433)
T ss_dssp             HHH-----HHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             HHH-----HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCe
Confidence            322     2223344554 44432 111222344566665554443

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.22  E-value=0.0051  Score=56.92  Aligned_cols=95  Identities=16%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC---------------CccccCCHHHhcccCCEEEEeccC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL---------------NYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ..++|+|||.|.+|..+|..+...|.  +|..+|...+...               ......+..+.++.||+|+++.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            35689999999999999999987776  8999998643210               011112234678999999998753


Q ss_pred             Chh---hh-ccc--c-------HHHHhccCCCcEEEEeCCCcccCHH
Q 042102          210 TEE---TQ-HIV--N-------RQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       210 ~~~---t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                      ...   ++ .++  |       .+.+....|++++++++-  ++|.-
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN--Pvd~~  128 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN--PVDIL  128 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC--hHHHH
Confidence            211   11 111  1       122334568999999973  45443

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.22  E-value=0.0076  Score=55.72  Aligned_cols=87  Identities=20%  Similarity=0.302  Sum_probs=61.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-cCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-YPNLIDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-~~~l~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++.     .+... ..+.+++.+..|+|+-+......     -..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHH
Confidence            57899999999999999999999999999988776542     12111 12333444468888877664321     245


Q ss_pred             HHhccCCCcEEEEeCCCc
Q 042102          221 VINALGPKGVLINIGRGL  238 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~  238 (317)
                      .++.++++..++.++...
T Consensus       251 ~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          251 YLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HHTTEEEEEEEEECCCCC
T ss_pred             HHHHHhcCCEEEEECCCC
Confidence            677888888888887543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.22  E-value=0.0085  Score=54.84  Aligned_cols=63  Identities=10%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEE-EEeCCCCCCC------CCccccCCHHHhc----------ccCCEEEEeccCC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCII-GYNSRTEKPN------LNYKYYPNLIDLA----------SNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V-~~~~~~~~~~------~~~~~~~~l~el~----------~~aDvV~~~lp~~  210 (317)
                      .++||||+ |.||+..++.++..+.++ .++|+++...      .....+.++++++          .+.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 789999999999889875 5778766532      1223457888887          6799999999965


Q ss_pred             h
Q 042102          211 E  211 (317)
Q Consensus       211 ~  211 (317)
                      .
T Consensus        84 ~   84 (312)
T 3o9z_A           84 L   84 (312)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.21  E-value=0.016  Score=55.58  Aligned_cols=87  Identities=8%  Similarity=0.175  Sum_probs=65.5

Q ss_pred             ccCCeEEEEecC----------hhHHHHHHHHhhC-CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          146 FTGKSVGILGMG----------RIGTAIAKRAEAF-DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       146 l~g~~vgIiG~G----------~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      +.|++|+|+|+.          .-...+++.|... |++|.+||+.....   ....++++.++.+|.|+++....+ -+
T Consensus       313 ~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~---~~~~~~~~~~~~ad~vvi~t~~~~-f~  388 (431)
T 3ojo_A          313 LSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD---FVEHDMSHAVKDASLVLILSDHSE-FK  388 (431)
T ss_dssp             SSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT---TBCSTTHHHHTTCSEEEECSCCGG-GT
T ss_pred             cCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc---cccCCHHHHHhCCCEEEEecCCHH-Hh
Confidence            589999999974          3468899999999 99999999876543   234678899999999999987553 22


Q ss_pred             ccccHHHHhccCCCcEEEEeCCCcc
Q 042102          215 HIVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      . ++.+.++.|+ +.+++|+ |+-+
T Consensus       389 ~-~d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          389 N-LSDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             S-CCGGGGTTCS-SCEEEES-SCCC
T ss_pred             c-cCHHHHHhCC-CCEEEEC-CCCC
Confidence            2 3444556676 6788885 5443

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.18  E-value=0.0039  Score=58.14  Aligned_cols=64  Identities=16%  Similarity=0.235  Sum_probs=48.6

Q ss_pred             CeEEEEecChhHHH-HHHHHhhC-CCEEE-EeCCCCCCC----CCccccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAF-DCIIG-YNSRTEKPN----LNYKYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~----~~~~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++...    .+...+.+++++++  +.|+|++++|....
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   78 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLH   78 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTH
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHH
Confidence            48999999999997 67777766 67764 677765331    13345678999988  78999999997654

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.17  E-value=0.073  Score=49.36  Aligned_cols=90  Identities=11%  Similarity=0.068  Sum_probs=65.1

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEec
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~l  207 (317)
                      .+.|++|++||= +++.++.+..+..||++|.+..+..-...              +  .....+++ .++++|+|..-+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence            488999999996 57888899999999999988876432211              1  22356788 999999998632


Q ss_pred             --cC-----C-hh----h--hccccHHHHhccCCCcEEEEeC
Q 042102          208 --SL-----T-EE----T--QHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       208 --p~-----~-~~----t--~~li~~~~l~~mk~gavlVN~~  235 (317)
                        ..     . .+    .  ...++++.++.+|++++|.-+.
T Consensus       251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence              11     0 11    1  1456888888899999998886

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.15  E-value=0.062  Score=51.64  Aligned_cols=157  Identities=14%  Similarity=0.127  Sum_probs=105.5

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-
Q 042102           94 GIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-  172 (317)
Q Consensus        94 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-  172 (317)
                      .|+|.|..-   .-+|=-+++.+++.+|-.                   ++.+...+|.|.|.|..|-.+|+.+...|. 
T Consensus       187 ~ipvFnDD~---qGTA~V~lAgllnAlki~-------------------gk~l~d~riV~~GAGaAGigia~ll~~~G~~  244 (487)
T 3nv9_A          187 DIPVWHDDQ---QGTASVTLAGLLNALKLV-------------------KKDIHECRMVFIGAGSSNTTCLRLIVTAGAD  244 (487)
T ss_dssp             SSCEEETTT---HHHHHHHHHHHHHHHHHH-------------------TCCGGGCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             cCCcccccc---chHHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECCCHHHHHHHHHHHHcCCC
Confidence            799999863   456667788888876643                   456888999999999999999999999998 


Q ss_pred             --EEEEeCCCC----CCC-C----------------CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102          173 --IIGYNSRTE----KPN-L----------------NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG  229 (317)
Q Consensus       173 --~V~~~~~~~----~~~-~----------------~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  229 (317)
                        +++.+|+..    ... .                ......+|.|+++.+|+++-.--.   ..|.|.++.++.|.+.+
T Consensus       245 ~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~---~pg~ft~e~V~~Ma~~P  321 (487)
T 3nv9_A          245 PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTP---GPGVVKAEWIKSMGEKP  321 (487)
T ss_dssp             GGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCS---SCCCCCHHHHHTSCSSC
T ss_pred             cccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEeccc---CCCCCCHHHHHhhcCCC
Confidence              688887642    110 0                000234799999999977655311   14789999999999999


Q ss_pred             EEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCC
Q 042102          230 VLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVA  285 (317)
Q Consensus       230 vlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a  285 (317)
                      ++.-.|....  |-.-.++.+.|+..-|    +...+.|    -+..|+++-|-++
T Consensus       322 IIFaLSNPtp--Ei~pe~A~~~G~aIvA----TGrsd~P----nQ~NN~liFPGI~  367 (487)
T 3nv9_A          322 IVFCCANPVP--EIYPYEAKEAGAYIVA----TGRGDFP----NQVNNSVGFPGIL  367 (487)
T ss_dssp             EEEECCSSSC--SSCHHHHHHTTCSEEE----ESCTTSS----SBCCGGGTHHHHH
T ss_pred             EEEECCCCCc--cCCHHHHHHhCCEEEE----ECCCCCc----ccCcceeEcchhh
Confidence            9999987554  2111223335663322    1111212    2456777777544

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.15  E-value=0.0058  Score=59.12  Aligned_cols=42  Identities=14%  Similarity=0.130  Sum_probs=37.6

Q ss_pred             ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +++.-+++|++|.|||.|.+|.+.++.|...|++|.++++..
T Consensus         4 ~P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EEEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            455667999999999999999999999999999999998753

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.14  E-value=0.0039  Score=57.45  Aligned_cols=64  Identities=17%  Similarity=0.243  Sum_probs=48.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC---CEE-EEeCCCCCCC------CCc-cccCCHHHhcc--cCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD---CII-GYNSRTEKPN------LNY-KYYPNLIDLAS--NCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G---~~V-~~~~~~~~~~------~~~-~~~~~l~el~~--~aDvV~~~lp~~~~  212 (317)
                      .++||||+|.||+..++.++..+   +++ .+++++....      .+. ..+.+++++++  +.|+|++++|....
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   79 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH   79 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence            48999999999999999998664   454 5678765432      122 24678999987  69999999996543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.12  E-value=0.027  Score=51.03  Aligned_cols=106  Identities=10%  Similarity=0.049  Sum_probs=75.1

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC--CCCccccCCHHHhcccCCEEEEeccCCh----------h
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP--NLNYKYYPNLIDLASNCQILVVACSLTE----------E  212 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~--~~~~~~~~~l~el~~~aDvV~~~lp~~~----------~  212 (317)
                      .+.|++|.|+|........++.|...|++|.+.......  ..+.....++.+.++++|+|+...|...          .
T Consensus         4 ~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~   83 (300)
T 2rir_A            4 MLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN   83 (300)
T ss_dssp             CCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence            367889999999999999999999999998876432211  1223334557788899999887444321          1


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +...++++.++.++++.+++ ++    +|..++.+++.+..+.
T Consensus        84 ~~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           84 EEVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             SCEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCC
T ss_pred             CCccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCE
Confidence            23347889999999988877 33    2667766777777776

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.12  E-value=0.0092  Score=54.77  Aligned_cols=63  Identities=6%  Similarity=0.111  Sum_probs=48.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEE-EEeCCCCCCC------CCccccCCHHHhc-----------ccCCEEEEeccC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCII-GYNSRTEKPN------LNYKYYPNLIDLA-----------SNCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V-~~~~~~~~~~------~~~~~~~~l~el~-----------~~aDvV~~~lp~  209 (317)
                      .++||||+ |.||+..++.++..|.++ .++|+++...      .....+.++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 789999999999889875 5778765432      1223456888876           579999999996


Q ss_pred             Ch
Q 042102          210 TE  211 (317)
Q Consensus       210 ~~  211 (317)
                      ..
T Consensus        84 ~~   85 (318)
T 3oa2_A           84 YL   85 (318)
T ss_dssp             GG
T ss_pred             HH
Confidence            54

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.07  E-value=0.0037  Score=56.50  Aligned_cols=42  Identities=14%  Similarity=0.288  Sum_probs=37.3

Q ss_pred             ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +++...+.|++|.|||.|.+|...++.|...|++|.++++..
T Consensus         5 lpl~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eeEEEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            455678999999999999999999999999999999988643

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.06  E-value=0.03  Score=51.91  Aligned_cols=96  Identities=9%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEecc
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      +.|++|++||= +++.++.+..+..||++|.+..|..-...              +  .....+++++++++|+|..-.=
T Consensus       177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w  256 (340)
T 4ep1_A          177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW  256 (340)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc
Confidence            78999999996 57788888899999999988876432111              1  2235689999999999876432


Q ss_pred             CC------hh-----hhccccHHHHhccCCCcEEEEeC---CCcccC
Q 042102          209 LT------EE-----TQHIVNRQVINALGPKGVLINIG---RGLLVD  241 (317)
Q Consensus       209 ~~------~~-----t~~li~~~~l~~mk~gavlVN~~---rg~~vd  241 (317)
                      ..      ++     ....++++.++.+|++++|.-+.   ||.=|+
T Consensus       257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt  303 (340)
T 4ep1_A          257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVT  303 (340)
T ss_dssp             ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBC
T ss_pred             cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeC
Confidence            11      01     12457899999999999999986   554443

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.06  E-value=0.027  Score=52.58  Aligned_cols=92  Identities=12%  Similarity=0.095  Sum_probs=68.9

Q ss_pred             cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|.+|+++|=|  ++.++.+..+..+|++|.+..+..-...              +  .....+++++++.+|+|..-
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  252 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD  252 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc
Confidence            3789999999996  9999999999999999988876432111              1  22357899999999998774


Q ss_pred             cc---CC--h-h-----hhccccHHHHhccC---CCcEEEEeCC
Q 042102          207 CS---LT--E-E-----TQHIVNRQVINALG---PKGVLINIGR  236 (317)
Q Consensus       207 lp---~~--~-~-----t~~li~~~~l~~mk---~gavlVN~~r  236 (317)
                      .=   ..  . +     ....++++.++.+|   ++++|.-+.-
T Consensus       253 ~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          253 VWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             CSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             ccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence            32   01  1 0     12457899999999   9999999854

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.05  E-value=0.016  Score=54.23  Aligned_cols=83  Identities=12%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCC-CEEEEeCCCCCCCCCc-------c-------ccCCHHHhcccCCEEEEeccCC
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFD-CIIGYNSRTEKPNLNY-------K-------YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~-------~-------~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ...+|||+| +|.+|+.+.+.|.... +++.+..........+       .       ...+ ++.++.+|+|++|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 9999999999998765 4766554322111100       0       0112 45567899999999855


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ..      .+.....+.|+.+|+.+.
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSS
T ss_pred             hH------HHHHHHHhCCCEEEECCc
Confidence            43      222222367899999874

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.04  E-value=0.0058  Score=58.38  Aligned_cols=62  Identities=18%  Similarity=0.335  Sum_probs=46.3

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCcc---ccC---CHHHhcccCCEEEE
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYK---YYP---NLIDLASNCQILVV  205 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~---~~~---~l~el~~~aDvV~~  205 (317)
                      .-+.|++|+|+|-|.+|+.+++.++.+|++|+++|+.+...    ....   .+.   .+.++++++|+|+.
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999999999999998765432    1100   112   35566778998874

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.04  E-value=0.007  Score=58.19  Aligned_cols=105  Identities=14%  Similarity=0.107  Sum_probs=69.8

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC---CCC----------------------------ccccC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP---NLN----------------------------YKYYP  191 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~---~~~----------------------------~~~~~  191 (317)
                      +.++.|+||.|=|+|++|+.+|+.|...|++|+..+.+...   ..+                            .... 
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~-  308 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL-  308 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE-
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe-
Confidence            35689999999999999999999999999998765422100   000                            0000 


Q ss_pred             CHHHh-cccCCEEEEeccCChhhhccccHHHHhccCCC--cEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          192 NLIDL-ASNCQILVVACSLTEETQHIVNRQVINALGPK--GVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       192 ~l~el-~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g--avlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +-+++ -..||+++-|.     +.+.|+.+..+.++.+  .++++-+-+.+-.+ + .+.|.+..|.
T Consensus       309 ~~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl  368 (450)
T 4fcc_A          309 EGQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVL  368 (450)
T ss_dssp             ETCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCE
T ss_pred             cCcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCE
Confidence            11111 23689877773     4567888888888754  46777777776443 3 3567777776

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.02  E-value=0.022  Score=52.43  Aligned_cols=96  Identities=15%  Similarity=0.228  Sum_probs=61.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCC--CCCC---------------Ccc-ccCCHHHhcccCCEEEEec
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTE--KPNL---------------NYK-YYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~--~~~~---------------~~~-~~~~l~el~~~aDvV~~~l  207 (317)
                      ..++|+|||.|.+|..+|..+...|. +|..+|+.+  ....               ... ...+-.+.++.||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            46799999999999999999998898 999999873  2110               000 1112246789999999986


Q ss_pred             cCC--hh-hh-ccc--c----H---HHHhccCCCcEEEEeCCCcccCHHH
Q 042102          208 SLT--EE-TQ-HIV--N----R---QVINALGPKGVLINIGRGLLVDEHE  244 (317)
Q Consensus       208 p~~--~~-t~-~li--~----~---~~l~~mk~gavlVN~~rg~~vd~~a  244 (317)
                      ...  +. ++ .++  |    +   +.+....|++++++++  .++|.-.
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd~~t  134 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVDAMT  134 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHHHHH
Confidence            422  11 11 122  1    1   1233346899999997  4454433

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.01  E-value=0.028  Score=53.74  Aligned_cols=105  Identities=11%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEE-eCCCC----CC---CCC------------------c--cccCCHH
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY-NSRTE----KP---NLN------------------Y--KYYPNLI  194 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~----~~---~~~------------------~--~~~~~l~  194 (317)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+. .|.+.    ..   ..+                  +  ....+.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~  286 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE  286 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence            3468999999999999999999999999999884 44442    00   000                  0  0011122


Q ss_pred             Hhc-ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          195 DLA-SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       195 el~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +++ ..||+++-|..     .+.|+.+....++ ..+++-.+-+.+- .+ -.+.|++..+.
T Consensus       287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          287 EFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             --------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             chhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            332 36888877744     4567888877774 5677777778764 33 33455555555

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.01  E-value=0.016  Score=49.11  Aligned_cols=88  Identities=19%  Similarity=0.244  Sum_probs=58.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccc------cCCHHHhcccCCEEEEeccCChhhhc--
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKY------YPNLIDLASNCQILVVACSLTEETQH--  215 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~------~~~l~el~~~aDvV~~~lp~~~~t~~--  215 (317)
                      ++|.|.| .|.||+.+++.|...|.+|.+.+|++...    .+...      ..+. +.+..+|+|+.+.........  
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~~   79 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTL-SDLSDQNVVVDAYGISPDEAEKH   79 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCH-HHHTTCSEEEECCCSSTTTTTSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhh-hhhcCCCEEEECCcCCccccchH
Confidence            4799999 49999999999999999999998875431    11110      1112 678899999988765433211  


Q ss_pred             -cccHHHHhccCC--CcEEEEeCCC
Q 042102          216 -IVNRQVINALGP--KGVLINIGRG  237 (317)
Q Consensus       216 -li~~~~l~~mk~--gavlVN~~rg  237 (317)
                       ......++.|++  ...+|++|..
T Consensus        80 ~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           80 VTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             HHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCceEEEEecc
Confidence             112445666654  3567877764

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.00  E-value=0.029  Score=53.62  Aligned_cols=105  Identities=14%  Similarity=0.177  Sum_probs=71.4

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC-----CC-----------CCC----c-cccCCHHHhc-cc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE-----KP-----------NLN----Y-KYYPNLIDLA-SN  199 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-----~~-----------~~~----~-~~~~~l~el~-~~  199 (317)
                      +.++.|+||.|-|+|++|+.+|+.|...|++|+ +.|.+.     +.           ..+    + ....+.++++ ..
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~  295 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD  295 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence            456899999999999999999999999999975 455431     00           001    0 0112345543 56


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ||+++-|..     .+.|+.+....++ -.+++-.+-+.+- . +-.+.|.+..|.
T Consensus       296 ~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~t-~-eA~~iL~~rGI~  343 (424)
T 3k92_A          296 CDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPTT-I-DATKILNERGVL  343 (424)
T ss_dssp             CSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCBC-H-HHHHHHHHTTCE
T ss_pred             ccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCCC-H-HHHHHHHHCCCE
Confidence            999887744     4668877777774 5667777788764 3 345677777776

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.98  E-value=0.032  Score=51.55  Aligned_cols=92  Identities=11%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             ccccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCC--C----------------CC--ccccCCHHHhcccCC
Q 042102          144 TKFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKP--N----------------LN--YKYYPNLIDLASNCQ  201 (317)
Q Consensus       144 ~~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~--~----------------~~--~~~~~~l~el~~~aD  201 (317)
                      ..+.|++|++||=|  ++.++.+..+..||++|.+..+..-.  .                .+  .....++++.++++|
T Consensus       157 ~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aD  236 (328)
T 3grf_A          157 NGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVD  236 (328)
T ss_dssp             TTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCS
T ss_pred             cccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCC
Confidence            35899999999986  88899999999999999888764322  1                11  223568999999999


Q ss_pred             EEEEe----ccCCh----h-----hhccccHHHHhccCCCcEEEEeC
Q 042102          202 ILVVA----CSLTE----E-----TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       202 vV~~~----lp~~~----~-----t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      +|..-    +...+    +     ....++++.++.+|++++|.-+.
T Consensus       237 vvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          237 VVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             EEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            99863    22111    0     12457899999999999999886

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=95.96  E-value=0.0048  Score=53.58  Aligned_cols=61  Identities=16%  Similarity=0.171  Sum_probs=43.8

Q ss_pred             CeEEEEecChhHHHHHHH--HhhCCCEEE-EeCCCCCCC----CCc--cccCCHHHhcc-cCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKR--AEAFDCIIG-YNSRTEKPN----LNY--KYYPNLIDLAS-NCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~--l~~~G~~V~-~~~~~~~~~----~~~--~~~~~l~el~~-~aDvV~~~lp~~  210 (317)
                      ++++|||+|.+|+.+++.  ... |+++. ++|..+...    .+.  ....+++++++ +.|+|++++|..
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            589999999999999985  334 88764 667655432    111  12467888876 589999999954

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.95  E-value=0.03  Score=51.38  Aligned_cols=92  Identities=10%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhC-CCEEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEecc
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAF-DCIIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .+.|++|+++|=   |++.++.+..+..+ |++|.+..+..-...          +  .....+++++++++|+|..-.=
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            378999999998   59999999999999 999988876432111          2  2235789999999999877532


Q ss_pred             CCh----h--h----hccccHHHHhccCCCcEEEEeCC
Q 042102          209 LTE----E--T----QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       209 ~~~----~--t----~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      -.+    +  .    ...++++.++.+||+++|.-+.-
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP  268 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP  268 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCSC
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCC
Confidence            111    1  0    24568888888899999888863

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=95.95  E-value=0.089  Score=49.04  Aligned_cols=96  Identities=13%  Similarity=0.064  Sum_probs=68.2

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEec
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~l  207 (317)
                      .+.|.+|++||= +++.++.+..+..||++|.+..+..-...              +  .....+++ .++++|+|..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            488999999996 67888999999999999988876432211              1  22356788 999999998632


Q ss_pred             ----cC---C-hh----h--hccccHHHHhccCCCcEEEEeC---CCcccC
Q 042102          208 ----SL---T-EE----T--QHIVNRQVINALGPKGVLINIG---RGLLVD  241 (317)
Q Consensus       208 ----p~---~-~~----t--~~li~~~~l~~mk~gavlVN~~---rg~~vd  241 (317)
                          ..   . ++    .  ...++.+.++.+|++++|.-+.   ||.=|+
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt  279 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVT  279 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBC
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeC
Confidence                10   0 11    1  1457889999999999999886   454443

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=95.92  E-value=0.0057  Score=59.47  Aligned_cols=110  Identities=7%  Similarity=0.014  Sum_probs=68.5

Q ss_pred             CCeEEEEecChh-HHHHHHHHhhC-----CCEEEEeCCCCCCC---------------CC--ccccCCHHHhcccCCEEE
Q 042102          148 GKSVGILGMGRI-GTAIAKRAEAF-----DCIIGYNSRTEKPN---------------LN--YKYYPNLIDLASNCQILV  204 (317)
Q Consensus       148 g~~vgIiG~G~i-G~~~a~~l~~~-----G~~V~~~~~~~~~~---------------~~--~~~~~~l~el~~~aDvV~  204 (317)
                      .++|+|||.|.. |.++|..|...     +.+|..||+.++..               ..  .....++++.++.||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            469999999998 66666555443     55799999876421               01  112357889999999999


Q ss_pred             EeccCChh---hh--------c--------------------ccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          205 VACSLTEE---TQ--------H--------------------IVN--RQVINALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       205 ~~lp~~~~---t~--------~--------------------li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      ++.|....   ++        +                    ++-  .+.+....|+++++|++-.-=+-..++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99986321   11        0                    110  123344568999999976543444444444434


Q ss_pred             CCceEE
Q 042102          252 GRLGGA  257 (317)
Q Consensus       252 g~i~ga  257 (317)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            466655

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.90  E-value=0.015  Score=52.47  Aligned_cols=60  Identities=18%  Similarity=0.245  Sum_probs=45.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHhh-CCCEEE-EeCCCCCCC------------CCccccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILG-MGRIGTAIAKRAEA-FDCIIG-YNSRTEKPN------------LNYKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~------------~~~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .+|+|+| +|.||+.+++.+.. -++++. +++++....            .+.....+++++++++|+|+-+.+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence            5899999 99999999998864 467765 477764211            123345789999999999988765

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.88  E-value=0.011  Score=54.37  Aligned_cols=109  Identities=15%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC---------------CccccCCHHHhcccCCEEEEeccC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL---------------NYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ..++|+|||.|.+|..++..+...|.  +|..+|..++...               ......+..+.++.||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            34699999999999999999886674  7989987642110               001111346779999999999865


Q ss_pred             Chh---hh--------cccc--HHHHhccCCCcEEEEeCCCcccCHH--HHHHH--HHhCCceEE
Q 042102          210 TEE---TQ--------HIVN--RQVINALGPKGVLINIGRGLLVDEH--ELVSA--LLQGRLGGA  257 (317)
Q Consensus       210 ~~~---t~--------~li~--~~~l~~mk~gavlVN~~rg~~vd~~--aL~~a--l~~g~i~ga  257 (317)
                      ...   ++        .++.  .+.+....|++++++++  ..+|.-  .+.+.  +...++.|.
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEec
Confidence            321   11        1110  12233347899999975  445443  33332  233356555

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.85  E-value=0.034  Score=51.70  Aligned_cols=82  Identities=15%  Similarity=0.084  Sum_probs=51.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCC-CEEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFD-CIIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .+|||+| .|.+|+.+.+.|.... +++.+..+......          +  .....++++ +..+|+|++|+|.....+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s~~   83 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVFAR   83 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHHHH
Confidence            5899999 7999999999998655 47655433221110          0  001123444 578999999999764422


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                       + -+.   .++.|..+|+.+-
T Consensus        84 -~-a~~---~~~aG~~VId~Sa  100 (345)
T 2ozp_A           84 -E-FDR---YSALAPVLVDLSA  100 (345)
T ss_dssp             -T-HHH---HHTTCSEEEECSS
T ss_pred             -H-HHH---HHHCCCEEEEcCc
Confidence             1 122   2467888999875

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=95.85  E-value=0.03  Score=52.42  Aligned_cols=91  Identities=12%  Similarity=0.102  Sum_probs=67.7

Q ss_pred             ccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCC--C--------------C--ccccCCHHHhcccCCEEEE
Q 042102          146 FTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPN--L--------------N--YKYYPNLIDLASNCQILVV  205 (317)
Q Consensus       146 l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~--~--------------~--~~~~~~l~el~~~aDvV~~  205 (317)
                      +.|++|++||=|  ++.++.+..+..+|++|.+..|..-..  .              +  .....+++++++.+|+|..
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt  257 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT  257 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence            889999999988  788999999999999998887643111  0              1  2235789999999999987


Q ss_pred             ec----cCChh---------hhccccHHHHhccCCCcEEEEeCC
Q 042102          206 AC----SLTEE---------TQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       206 ~l----p~~~~---------t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      -+    ....+         ....++++.++.+|++++|.-+.-
T Consensus       258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP  301 (365)
T 4amu_A          258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP  301 (365)
T ss_dssp             CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred             cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence            32    11111         124578999999999999998853

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=95.84  E-value=0.011  Score=55.11  Aligned_cols=65  Identities=14%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhC--------CCEE-EEeCCCCCCCC------Cc-cccCCHHHhcc--cCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAF--------DCII-GYNSRTEKPNL------NY-KYYPNLIDLAS--NCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~--------G~~V-~~~~~~~~~~~------~~-~~~~~l~el~~--~aDvV~~~lp  208 (317)
                      +..+|||||+|.||+.-++.++.+        +++| .++|+++....      +. ..+.+++++++  +.|+|++++|
T Consensus        24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP  103 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTP  103 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSC
T ss_pred             CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCC
Confidence            445899999999999877766543        4665 47788765431      22 34678999986  4799999999


Q ss_pred             CCh
Q 042102          209 LTE  211 (317)
Q Consensus       209 ~~~  211 (317)
                      ...
T Consensus       104 ~~~  106 (393)
T 4fb5_A          104 NQF  106 (393)
T ss_dssp             GGG
T ss_pred             hHH
Confidence            654

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.84  E-value=0.062  Score=51.25  Aligned_cols=105  Identities=13%  Similarity=0.120  Sum_probs=69.8

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhh-CCCEEE-EeCCCCC---C--C---------------CCcc--ccCCHHHhc-
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEA-FDCIIG-YNSRTEK---P--N---------------LNYK--YYPNLIDLA-  197 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~---~--~---------------~~~~--~~~~l~el~-  197 (317)
                      +.++.|++|.|.|+|++|+.+++.|.. .|++|+ +.|.+..   +  .               .++.  ...+.++++ 
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~  283 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  283 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc
Confidence            446899999999999999999999998 999987 4454210   0  0               0000  111345554 


Q ss_pred             ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          198 SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       198 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ..||+++-|..     .+.++.+....++ ..+++-.+-+.+- .++ .+.|.+..+.
T Consensus       284 ~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          284 LDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEA-DEILSRRGIL  333 (415)
T ss_dssp             CSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence            47999888865     4557777777774 5566777777764 333 3556666665

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.84  E-value=0.012  Score=49.14  Aligned_cols=63  Identities=13%  Similarity=0.086  Sum_probs=47.4

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc-------ccCCHHHhcccCCEEEEeccCC
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK-------YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      +++|.|.|. |.||+.+++.|...|.+|.+.+|++....     ...       ...++.++++.+|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            478999998 99999999999999999998888654321     111       1124567788999998887644

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.84  E-value=0.0091  Score=53.15  Aligned_cols=93  Identities=19%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-Cc-------cccCCHHHhccc-CCEEEEeccCChhh-hc-
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-NY-------KYYPNLIDLASN-CQILVVACSLTEET-QH-  215 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~-------~~~~~l~el~~~-aDvV~~~lp~~~~t-~~-  215 (317)
                      .+++|.|.|.|.||+.+++.|...|.+|.+.+|+..... +.       ....++.++++. +|+|+.+...+... .. 
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~   81 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASEYSDEHY   81 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHHHC----
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCCCCCCCHHHH
Confidence            357899999999999999999999999999888754321 11       112234556666 99988776432110 00 


Q ss_pred             ----cc-cHHHHhccCC-C-cEEEEeCCCcc
Q 042102          216 ----IV-NRQVINALGP-K-GVLINIGRGLL  239 (317)
Q Consensus       216 ----li-~~~~l~~mk~-g-avlVN~~rg~~  239 (317)
                          +. ....++.++. + ..||.+|...+
T Consensus        82 ~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~v  112 (286)
T 3gpi_A           82 RLSYVEGLRNTLSALEGAPLQHVFFVSSTGV  112 (286)
T ss_dssp             -CCSHHHHHHHHHHTTTSCCCEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHhhCCCCEEEEEcccEE
Confidence                00 1334455543 2 46777776544

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.83  E-value=0.0098  Score=50.77  Aligned_cols=63  Identities=14%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCC----------ccc-cCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN----------YKY-YPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------~~~-~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|.|.| .|.||+.+++.|...|++|.+.+|+......          ... ..++.++++++|+|+.+.....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~   75 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG   75 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence            4789999 7999999999999999999999887643211          111 2245677889999998877553

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.79  E-value=0.025  Score=52.89  Aligned_cols=86  Identities=16%  Similarity=0.210  Sum_probs=55.1

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCC------CEEEEeC-CC-CCCCC-----------Cccc-cCCHHHhcccCCEEEEec
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFD------CIIGYNS-RT-EKPNL-----------NYKY-YPNLIDLASNCQILVVAC  207 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G------~~V~~~~-~~-~~~~~-----------~~~~-~~~l~el~~~aDvV~~~l  207 (317)
                      ++|+|+| .|.+|+.+.+.|...+      .++..+. ++ ..+..           .... ..+. +.++.+|+|++|+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al   88 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL   88 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence            6899999 9999999999998766      4665543 22 21110           0000 1132 3356899999999


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                      |...      ..+..+.++.|..+|+.|..--.+
T Consensus        89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~  116 (352)
T 2nqt_A           89 PHGH------SAVLAQQLSPETLIIDCGADFRLT  116 (352)
T ss_dssp             TTSC------CHHHHHHSCTTSEEEECSSTTTCS
T ss_pred             CCcc------hHHHHHHHhCCCEEEEECCCccCC
Confidence            9653      344444456689999987544333

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.78  E-value=0.015  Score=49.56  Aligned_cols=88  Identities=17%  Similarity=0.147  Sum_probs=57.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc------cCCHHHhcccCCEEEEeccCC--hh--
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY------YPNLIDLASNCQILVVACSLT--EE--  212 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~------~~~l~el~~~aDvV~~~lp~~--~~--  212 (317)
                      ++|.|.|. |.||+.+++.|...|++|.+.+|+....     .+...      ..+. +.+..+|+|+.+....  +.  
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~   79 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVPWGSGRG   79 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCCTTSSCT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccH-hhcccCCEEEECCccCCCcchh
Confidence            47899997 9999999999999999999998875321     11110      1112 6788999998887653  11  


Q ss_pred             hhcc-ccHHHHhccCC-CcEEEEeCCC
Q 042102          213 TQHI-VNRQVINALGP-KGVLINIGRG  237 (317)
Q Consensus       213 t~~l-i~~~~l~~mk~-gavlVN~~rg  237 (317)
                      ..++ .....++.|++ |..+|++|..
T Consensus        80 ~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           80 YLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             hHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            0011 12445666653 4678888653

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.77  E-value=0.007  Score=56.12  Aligned_cols=64  Identities=8%  Similarity=0.143  Sum_probs=46.8

Q ss_pred             CeEEEEecChhHH-HHHHHHhhC-CCEEE-EeCCCCCCC-------CCccccCCHHHhccc--CCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGT-AIAKRAEAF-DCIIG-YNSRTEKPN-------LNYKYYPNLIDLASN--CQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~-~~a~~l~~~-G~~V~-~~~~~~~~~-------~~~~~~~~l~el~~~--aDvV~~~lp~~~~  212 (317)
                      .+|||||+|.||+ ..+..++.. +++|. +++++....       .+...+.+++++++.  .|+|++++|....
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTH   78 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHH
Confidence            4899999999998 567777665 67764 778762111       233456789999886  8999999996543

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=95.74  E-value=0.012  Score=53.33  Aligned_cols=101  Identities=16%  Similarity=0.096  Sum_probs=62.4

Q ss_pred             CeEEEEecChhHHHHHHHHhh----CCCEEE-EeCCCCCCC-CCccccCCHHHhcc--cCCEEEEeccCChhhhccccHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEA----FDCIIG-YNSRTEKPN-LNYKYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~----~G~~V~-~~~~~~~~~-~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      .+|||||+|.||+..++.+..    -++++. +++++.... .+.. ..+++++++  +.|+|++++|......     -
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~-----~   81 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVR-QISLEDALRSQEIDVAYICSESSSHED-----Y   81 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHH-----H
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHH-----H
Confidence            489999999999999888865    356654 667653221 1222 478999987  6899999999543322     2


Q ss_pred             HHhccCCCc-EEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          221 VINALGPKG-VLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       221 ~l~~mk~ga-vlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ....++.|. +++.- ---.+-+.+.|.++.++..+.
T Consensus        82 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           82 IRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            223344454 55552 111223445677766655544

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=95.74  E-value=0.054  Score=51.95  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=69.7

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC-----CC---------------CCCc--cccCCHHHhc-c
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE-----KP---------------NLNY--KYYPNLIDLA-S  198 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-----~~---------------~~~~--~~~~~l~el~-~  198 (317)
                      +.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+.     +.               ..++  ....+.++++ .
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~  309 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL  309 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence            346889999999999999999999999999987 445421     00               0000  0112345554 4


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .||+++-|..     .+.|+.+....++ ..+++-.+-+.+- .++ .+.|.+..|.
T Consensus       310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI~  358 (440)
T 3aog_A          310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGVL  358 (440)
T ss_dssp             CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTCE
T ss_pred             CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCCE
Confidence            7999988854     4567777777774 5667777777764 333 3556666665

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.74  E-value=0.013  Score=54.40  Aligned_cols=99  Identities=21%  Similarity=0.175  Sum_probs=61.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhC---------CCEE-EEeCCCCCCCCCc---cccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF---------DCII-GYNSRTEKPNLNY---KYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~---------G~~V-~~~~~~~~~~~~~---~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+|||||+|.||+.+++.+...         +++| .+++++.....+.   ....++++++ +.|+|+.+.|.......
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~~   82 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPLR   82 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHHH
Confidence            4799999999999999988665         4565 4667665433221   2345778888 99999999886532111


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcc-cCHHHHHHHHHhC
Q 042102          216 IVNRQVINALGPKGVLINIGRGLL-VDEHELVSALLQG  252 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~-vd~~aL~~al~~g  252 (317)
                          -..+.++.|.-+|...-..+ -..+.|.++.++.
T Consensus        83 ----~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           83 ----LVLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             ----HHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             ----HHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence                11234455555554322222 2445666666665

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.74  E-value=0.0099  Score=57.25  Aligned_cols=110  Identities=15%  Similarity=0.220  Sum_probs=69.6

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---------CCccc--cCCHHHhccc-CCEEEEeccC---
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---------LNYKY--YPNLIDLASN-CQILVVACSL---  209 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~--~~~l~el~~~-aDvV~~~lp~---  209 (317)
                      ++.|++|.|||+|..|.++|+.|+..|++|.++|......         .+...  -...++++.. +|+|+..-..   
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            4789999999999999999999999999999999754211         12211  1223356666 8988886322   


Q ss_pred             Chhh-----hc--cccH-HHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCc
Q 042102          210 TEET-----QH--IVNR-QVINALGPKGVL-INIGRGLLVDEHELVSALLQGRL  254 (317)
Q Consensus       210 ~~~t-----~~--li~~-~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i  254 (317)
                      +|..     ++  ++++ +.+..+.+..++ |--+.|..--..-+...|+....
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            2221     11  3443 334343344444 44356887777777777775443

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.73  E-value=0.0072  Score=56.10  Aligned_cols=92  Identities=14%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--------CCcc--------ccCCHHHhcccCCEEEEeccC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--------LNYK--------YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------~~~~--------~~~~l~el~~~aDvV~~~lp~  209 (317)
                      .+++|.|.|. |.||+.+++.|...|++|.+.+|+....        .+..        ...++.++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            3678999995 9999999999998999999887765431        0111        112356778999999876654


Q ss_pred             ChhhhccccHHHHhccCC-C--cEEEEeCCCc
Q 042102          210 TEETQHIVNRQVINALGP-K--GVLINIGRGL  238 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~-g--avlVN~~rg~  238 (317)
                      .....+......++.++. |  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            311112223445554433 3  4788887754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.67  E-value=0.01  Score=55.24  Aligned_cols=88  Identities=20%  Similarity=0.234  Sum_probs=60.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-----cC-CHHHh-cccCCEEEEeccCChhhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-----YP-NLIDL-ASNCQILVVACSLTEETQ  214 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~-~l~el-~~~aDvV~~~lp~~~~t~  214 (317)
                      .|.+|.|+|.|.+|..+++.++.+|++|++.+++++..     .+...     .. ++.+. ....|+|+-+...++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            47899999999999999999999999999988765432     11111     11 33332 246899988877521  0


Q ss_pred             ccccHHHHhccCCCcEEEEeCCC
Q 042102          215 HIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ..+ ...++.++++..+|.++..
T Consensus       257 ~~~-~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          257 IDF-NIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             CCT-TTGGGGEEEEEEEEECCCC
T ss_pred             HHH-HHHHHHhcCCCEEEEecCC
Confidence            112 3456778888888888753

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=95.67  E-value=0.055  Score=49.86  Aligned_cols=97  Identities=11%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEec
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~l  207 (317)
                      .+.|+||++||= +++.++.+..+..+|++|.+..|..-...              +  .....+++++++++|+|..-.
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence            378999999996 57888888889999999988876432111              1  224578999999999987643


Q ss_pred             cCC----h------h--hhccccHHHHhccCCCcEEEEeC---CCcccC
Q 042102          208 SLT----E------E--TQHIVNRQVINALGPKGVLINIG---RGLLVD  241 (317)
Q Consensus       208 p~~----~------~--t~~li~~~~l~~mk~gavlVN~~---rg~~vd  241 (317)
                      =..    .      +  ....++.+.++.+|++++|.-+.   ||.=|+
T Consensus       234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~  282 (323)
T 3gd5_A          234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEIT  282 (323)
T ss_dssp             CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBC
T ss_pred             eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeC
Confidence            111    0      0  12357899999999999999885   454343

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.66  E-value=0.031  Score=50.75  Aligned_cols=84  Identities=14%  Similarity=0.065  Sum_probs=54.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHh-hCCCEEE-EeCCCCCC-------------CCCccccCCHHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILG-MGRIGTAIAKRAE-AFDCIIG-YNSRTEKP-------------NLNYKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~-~~G~~V~-~~~~~~~~-------------~~~~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      .+|+|+| +|+||+.+++.+. .-++++. +++++...             ..+.....++++++.++|+|+-..+  ++
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~   99 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ   99 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence            5899999 9999999999886 4578754 66775421             1223345789999999999987654  22


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ..   .+.....++.|.-+|-...|
T Consensus       100 a~---~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A          100 AS---VLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             HH---HHHHHHHHHHTCEEEECCCC
T ss_pred             HH---HHHHHHHHHcCCCEEEECCC
Confidence            11   11122234456556655555

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=95.66  E-value=0.014  Score=53.11  Aligned_cols=103  Identities=14%  Similarity=0.125  Sum_probs=66.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCE-EEEeCCCCC--CCCCccccCCHHHhcc--cCCEEEEeccCChhhhccccHHHH
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCI-IGYNSRTEK--PNLNYKYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~~~--~~~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .++.|+|. |++|+.+++.+...|++ |...++...  ...+...+.+++++..  .+|++++++|... +...+ ++..
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~-~~~~v-~ea~   91 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPF-AKDAV-FEAI   91 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHH-HHHHH-HHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHH-HHHHH-HHHH
Confidence            35788899 99999999999988987 335554421  1134455788999988  8999999998432 22222 2222


Q ss_pred             hccCCCcEEEEeCCC-cccCHHHHHHHHHhCCce
Q 042102          223 NALGPKGVLINIGRG-LLVDEHELVSALLQGRLG  255 (317)
Q Consensus       223 ~~mk~gavlVN~~rg-~~vd~~aL~~al~~g~i~  255 (317)
                      + .+... +|..+.| ..-+++.|.++.++..+.
T Consensus        92 ~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           92 D-AGIEL-IVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             H-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             H-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2 12222 3444444 223566888888877665

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=95.64  E-value=0.0095  Score=54.99  Aligned_cols=63  Identities=11%  Similarity=0.289  Sum_probs=46.0

Q ss_pred             CeEEEEecChhHHH-HHHHHhhC-CCEEE-EeCCCCCCC------CCc-cccCCHHHhcc--cCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAF-DCIIG-YNSRTEKPN------LNY-KYYPNLIDLAS--NCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~------~~~-~~~~~l~el~~--~aDvV~~~lp~~~  211 (317)
                      .++||||+|.||+. .+..++.. +++|. ++|++++..      .+. ..+.+++++++  +.|+|++++|...
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~   98 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQ   98 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCch
Confidence            48999999999986 56667655 67765 678775432      122 24678999985  4799999999654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.62  E-value=0.0061  Score=56.83  Aligned_cols=88  Identities=23%  Similarity=0.309  Sum_probs=59.5

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC---CCC-----CCcccc-C-CHHHhc----ccCCEEEEeccCC
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE---KPN-----LNYKYY-P-NLIDLA----SNCQILVVACSLT  210 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~---~~~-----~~~~~~-~-~l~el~----~~aDvV~~~lp~~  210 (317)
                      .+.|++|.|+|.|.+|..+++.++.+|++|++.+++.   +..     .+.... . ++.+.+    ...|+|+.+....
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            4679999999999999999999999999999988765   321     111111 0 111111    3478888877643


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ...   + +..++.|+++..+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            322   0 455677888888888864

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.61  E-value=0.017  Score=53.14  Aligned_cols=108  Identities=14%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC--------------CccccCCHHHhcccCCEEEEeccCCh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL--------------NYKYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      .++|+|||.|.+|..++..+...+.  ++..+|...+...              ......+..+.++.||+|+++.+...
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ   84 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            3699999999999999999986665  7888998543210              01111244677999999999976532


Q ss_pred             h---hh--------cccc--HHHHhccCCCcEEEEeCCCcccCHH--HHHHH--HHhCCceEE
Q 042102          212 E---TQ--------HIVN--RQVINALGPKGVLINIGRGLLVDEH--ELVSA--LLQGRLGGA  257 (317)
Q Consensus       212 ~---t~--------~li~--~~~l~~mk~gavlVN~~rg~~vd~~--aL~~a--l~~g~i~ga  257 (317)
                      .   ++        .++.  .+.+....|+++++++  ..++|.-  .+.+.  +...++.|.
T Consensus        85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA--ANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCcHHHHHHHHHHHcCCCHHHEEec
Confidence            2   11        1110  1223334789999997  4455443  23232  233356555

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.61  E-value=0.022  Score=51.51  Aligned_cols=66  Identities=9%  Similarity=0.024  Sum_probs=48.4

Q ss_pred             ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC------------C--------CccccCCHHHhcccCCE
Q 042102          144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN------------L--------NYKYYPNLIDLASNCQI  202 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~--------~~~~~~~l~el~~~aDv  202 (317)
                      ..+.|++|.|.|. |.||+.+++.|...|++|.+.+|+....            .        +.....+++++++.+|+
T Consensus         7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A            7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             cCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence            3467899999998 9999999999999999999887753210            0        11112345677788998


Q ss_pred             EEEeccC
Q 042102          203 LVVACSL  209 (317)
Q Consensus       203 V~~~lp~  209 (317)
                      |+.+...
T Consensus        87 vih~A~~   93 (342)
T 1y1p_A           87 VAHIASV   93 (342)
T ss_dssp             EEECCCC
T ss_pred             EEEeCCC
Confidence            8877643

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.59  E-value=0.013  Score=53.75  Aligned_cols=90  Identities=17%  Similarity=0.193  Sum_probs=57.6

Q ss_pred             eEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC---------------C--ccccCCHHHhcccCCEEEEeccCCh
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL---------------N--YKYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---------------~--~~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      +|+|||.|.+|..++..+...|+ +|..+|...+...               .  .....+. +.++.||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999998876676 6988998754211               1  1111454 67999999999966433


Q ss_pred             h-----------hhcccc--HHHHhccCCCcEEEEeCCCcccCH
Q 042102          212 E-----------TQHIVN--RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       212 ~-----------t~~li~--~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      .           +..++.  .+.+....|++++|+++-  .+|.
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~  121 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDA  121 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHH
Confidence            1           111110  112233358999999744  5554

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.58  E-value=0.014  Score=54.09  Aligned_cols=64  Identities=23%  Similarity=0.206  Sum_probs=45.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC------CCc------------------cccCCHHHhcccCCE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN------LNY------------------KYYPNLIDLASNCQI  202 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~------~~~------------------~~~~~l~el~~~aDv  202 (317)
                      .+|||+|+|.||+.+++.+... ++++. +.+++++..      .++                  ....+.++++.++|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            3799999999999999999765 46764 555543211      110                  123578888889999


Q ss_pred             EEEeccCChh
Q 042102          203 LVVACSLTEE  212 (317)
Q Consensus       203 V~~~lp~~~~  212 (317)
                      |+.++|....
T Consensus        83 V~~aTp~~~h   92 (334)
T 2czc_A           83 IVDATPGGIG   92 (334)
T ss_dssp             EEECCSTTHH
T ss_pred             EEECCCcccc
Confidence            9999996643

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.56  E-value=0.2  Score=45.42  Aligned_cols=65  Identities=12%  Similarity=0.058  Sum_probs=51.6

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----CccccCCHHHhcccCCEEEEeccCC
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      .+.|.+|+++|=   +++.++.+..+..+|++|.+..+..-...     +.....+++++++++|+|.. +-..
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q  215 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQ  215 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCcc
Confidence            378999999997   89999999999999999988876432111     23346789999999999988 5543

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.56  E-value=0.02  Score=53.64  Aligned_cols=86  Identities=10%  Similarity=0.101  Sum_probs=59.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc--c
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA--L  225 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~--m  225 (317)
                      -.++-|+|.|.+|+++++.++.+|++|.++|..+....        .+-+..+|-++...|          .+.+..  +
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~--------~~~fp~a~~v~~~~p----------~~~~~~~~~  260 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE--------KHFFPDADEIIVDFP----------ADFLRKFLI  260 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC--------GGGCTTCSEEEESCH----------HHHHHHSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc--------cccCCCceEEecCCH----------HHHHhhcCC
Confidence            35799999999999999999999999999887653221        112344564444333          112222  4


Q ss_pred             CCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          226 GPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       226 k~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      .+++.+|=+.++.-.|...|..+|++
T Consensus       261 ~~~t~vvv~TH~h~~D~~~L~~aL~~  286 (362)
T 3on5_A          261 RPDDFVLIMTHHFQKDQEILHFLLEK  286 (362)
T ss_dssp             CTTCEEEECCSCHHHHHHHHHHHSSS
T ss_pred             CCCeEEEEEeCCchhhHHHHHHHhcC
Confidence            56777777778777787777777765

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.55  E-value=0.0077  Score=57.87  Aligned_cols=63  Identities=11%  Similarity=0.133  Sum_probs=47.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEE-EEeCCCCCCC---------CC---ccccC----CHHHhcc--cCCEEEEecc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCII-GYNSRTEKPN---------LN---YKYYP----NLIDLAS--NCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~---------~~---~~~~~----~l~el~~--~aDvV~~~lp  208 (317)
                      .+|||||+|.||+..++.++.. |++| .++|+++...         .+   ...+.    +++++++  +.|+|++++|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp  100 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP  100 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence            5899999999999999988875 6776 5778765421         01   23355    8999997  5899999999


Q ss_pred             CCh
Q 042102          209 LTE  211 (317)
Q Consensus       209 ~~~  211 (317)
                      ...
T Consensus       101 ~~~  103 (444)
T 2ixa_A          101 WEW  103 (444)
T ss_dssp             GGG
T ss_pred             cHH
Confidence            654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.55  E-value=0.022  Score=49.09  Aligned_cols=65  Identities=17%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             ccCCeEEEEe-cChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC------------ccccCCHHHhcccCCEEEEeccCC
Q 042102          146 FTGKSVGILG-MGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN------------YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~------------~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      +.++++.|.| .|.||+.+++.|...|+  +|.+.+|++.....            .....+++++++.+|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5678999999 69999999999999999  99988886543211            111234667788999998887654

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.55  E-value=0.076  Score=48.58  Aligned_cols=98  Identities=11%  Similarity=0.111  Sum_probs=70.6

Q ss_pred             ccc-CCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------CccccCCHHHhcccCCEEEEe
Q 042102          145 KFT-GKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------NYKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~-g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+. |++|++||= +++.++.+..+..||++|.+..|..-...                ......++++.++++|+|..-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            377 999999996 57888888899999999988876432111                112346899999999999775


Q ss_pred             c---cCCh-h--------hhccccHHHHhccCCCcEEEEeC---CCcccCH
Q 042102          207 C---SLTE-E--------TQHIVNRQVINALGPKGVLINIG---RGLLVDE  242 (317)
Q Consensus       207 l---p~~~-~--------t~~li~~~~l~~mk~gavlVN~~---rg~~vd~  242 (317)
                      .   -..+ +        ....++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~  272 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSE  272 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCH
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCH
Confidence            4   1110 0        12457899999999999999986   5655543

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=95.52  E-value=0.024  Score=51.64  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=65.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCE-EEEeCCCC--CCCCCccccCCHHHhcc--c-CCEEEEeccCChhhhccccHHH
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCI-IGYNSRTE--KPNLNYKYYPNLIDLAS--N-CQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~~--~~~~~~~~~~~l~el~~--~-aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      .++.|+|. |++|+.+++.+...|++ |...++..  ....+...+.+++++..  . .|++++++|.... ...+. +.
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~-~~~v~-ea   91 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFA-PDAVY-EA   91 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGH-HHHHH-HH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHH-HHHHH-HH
Confidence            35677798 99999999999988997 34556543  11234556788999887  5 9999999985432 32222 22


Q ss_pred             HhccCCCcEEEEeCCCc-ccCHHHHHHHHHhCCce
Q 042102          222 INALGPKGVLINIGRGL-LVDEHELVSALLQGRLG  255 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~-~vd~~aL~~al~~g~i~  255 (317)
                      .+ .+... +|..+.|= .-+++.|.++.++..+.
T Consensus        92 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           92 VD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22 12222 34444442 23556888888877665

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=95.51  E-value=0.082  Score=49.27  Aligned_cols=92  Identities=10%  Similarity=0.053  Sum_probs=65.6

Q ss_pred             ccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCC-C-----------------CCccccCCHHHhcccCCEEE
Q 042102          144 TKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKP-N-----------------LNYKYYPNLIDLASNCQILV  204 (317)
Q Consensus       144 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~-~-----------------~~~~~~~~l~el~~~aDvV~  204 (317)
                      ..+.|++|++||=+ ++.++.+..+..||++|.+..+..-. .                 ..+....+++|+++++|+|.
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvy  263 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIV  263 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEE
Confidence            45899999999976 57788888889999999888764321 1                 01224578999999999997


Q ss_pred             Eec--cCChh----------hhccccHHHHhc--cCCCcEEEEeC
Q 042102          205 VAC--SLTEE----------TQHIVNRQVINA--LGPKGVLINIG  235 (317)
Q Consensus       205 ~~l--p~~~~----------t~~li~~~~l~~--mk~gavlVN~~  235 (317)
                      .-.  +...+          ....++.+.++.  +|++++|.-+.
T Consensus       264 td~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          264 TDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             ECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             eCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            632  21111          123578888888  89999998886

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.51  E-value=0.019  Score=53.01  Aligned_cols=93  Identities=18%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC--------------CccccCCHHHhcccCCEEEEeccCCh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL--------------NYKYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      .++|+|||.|.+|..++..+...+.  ++..+|...+...              ......+..+.++.||+|+++.+...
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4699999999999999999976665  7888997543210              01111244677999999999976533


Q ss_pred             hh---h--------cccc--HHHHhccCCCcEEEEeCCCcccCH
Q 042102          212 ET---Q--------HIVN--RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       212 ~t---~--------~li~--~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      .-   +        .++.  .+.+....|+++++++  ..++|.
T Consensus        89 k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~  130 (326)
T 2zqz_A           89 KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDI  130 (326)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHH
Confidence            21   0        1110  1122333689999997  445554

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.50  E-value=0.0075  Score=57.35  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=54.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC---CEEEEeCCCCCCCC------------Ccc-------ccCCHHHhccc--CCEEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD---CIIGYNSRTEKPNL------------NYK-------YYPNLIDLASN--CQILV  204 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~~------------~~~-------~~~~l~el~~~--aDvV~  204 (317)
                      ++|+|+|.|.||+.+++.|...|   .+|.+.+|+..+..            ...       ...++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999888   38988888653210            010       11346677777  89999


Q ss_pred             EeccCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          205 VACSLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       205 ~~lp~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      .+.|.... ..++ .   ..++.|.-+++++-
T Consensus        82 n~ag~~~~-~~v~-~---a~l~~g~~vvD~a~  108 (405)
T 4ina_A           82 NIALPYQD-LTIM-E---ACLRTGVPYLDTAN  108 (405)
T ss_dssp             ECSCGGGH-HHHH-H---HHHHHTCCEEESSC
T ss_pred             ECCCcccC-hHHH-H---HHHHhCCCEEEecC
Confidence            88774321 1111 1   22345666777644

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.46  E-value=0.019  Score=55.80  Aligned_cols=64  Identities=19%  Similarity=0.292  Sum_probs=48.9

Q ss_pred             CCeEEEEec----ChhHHHHHHHHhhC--CCEE-EEeCCCCCCC------CCc---cccCCHHHhcc--cCCEEEEeccC
Q 042102          148 GKSVGILGM----GRIGTAIAKRAEAF--DCII-GYNSRTEKPN------LNY---KYYPNLIDLAS--NCQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG~----G~iG~~~a~~l~~~--G~~V-~~~~~~~~~~------~~~---~~~~~l~el~~--~aDvV~~~lp~  209 (317)
                      -.+|||||+    |.||+..++.++..  +++| .++|+++...      .+.   ..+.+++++++  +.|+|++++|.
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~  118 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV  118 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence            368999999    99999999999876  6776 4788765421      122   25678999986  69999999995


Q ss_pred             Ch
Q 042102          210 TE  211 (317)
Q Consensus       210 ~~  211 (317)
                      ..
T Consensus       119 ~~  120 (479)
T 2nvw_A          119 PE  120 (479)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.46  E-value=0.038  Score=51.50  Aligned_cols=86  Identities=13%  Similarity=0.139  Sum_probs=60.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc----c---CCHHHhcc-----cCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY----Y---PNLIDLAS-----NCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~el~~-----~aDvV~~~lp  208 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++++..     .+...    .   .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 899988765432     12111    1   23433332     4788888766


Q ss_pred             CChhhhccccHHHHhccCCC-cEEEEeCCC
Q 042102          209 LTEETQHIVNRQVINALGPK-GVLINIGRG  237 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~g-avlVN~~rg  237 (317)
                      ..+.     -...++.++++ ..+|.++-.
T Consensus       272 ~~~~-----~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          272 NVGV-----MRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSCC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEEcCC
Confidence            3221     24567788988 888888743

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.45  E-value=0.012  Score=56.56  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             CCeEEEEec----ChhHHHHHHHHhhC--CCEE-EEeCCCCCCC------CCc---cccCCHHHhcc--cCCEEEEeccC
Q 042102          148 GKSVGILGM----GRIGTAIAKRAEAF--DCII-GYNSRTEKPN------LNY---KYYPNLIDLAS--NCQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG~----G~iG~~~a~~l~~~--G~~V-~~~~~~~~~~------~~~---~~~~~l~el~~--~aDvV~~~lp~  209 (317)
                      -.+|||||+    |.||+..++.++..  +++| .++|++....      .+.   ..+.+++++++  +.|+|++++|.
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~   99 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV   99 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence            358999999    99999999999887  6776 5788765421      122   24678999986  68999999995


Q ss_pred             Ch
Q 042102          210 TE  211 (317)
Q Consensus       210 ~~  211 (317)
                      ..
T Consensus       100 ~~  101 (438)
T 3btv_A          100 AS  101 (438)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.45  E-value=0.047  Score=49.09  Aligned_cols=38  Identities=29%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ..+.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999997 6899999999999999998887764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.45  E-value=0.019  Score=53.21  Aligned_cols=95  Identities=15%  Similarity=0.234  Sum_probs=61.1

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC--------------C--ccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL--------------N--YKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDvV~~~  206 (317)
                      ....++|+|||.|.+|..+|..+...|.  ++..+|.......              .  .....+.+ .++.||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3567899999999999999998877776  8999997643210              0  01123444 58999999988


Q ss_pred             ccCCh---hhh-cccc---------HHHHhccCCCcEEEEeCCCcccCH
Q 042102          207 CSLTE---ETQ-HIVN---------RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       207 lp~~~---~t~-~li~---------~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      .....   .++ .++.         .+.+....|++++++++.  .+|.
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN--Pvdi  141 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN--PVDI  141 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC--hHHH
Confidence            54321   122 1221         123344578999999974  4543

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.44  E-value=0.019  Score=52.20  Aligned_cols=67  Identities=10%  Similarity=-0.060  Sum_probs=49.2

Q ss_pred             cccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------Ccc-------ccCCHHHhcc--cCCEEEE
Q 042102          143 TTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------NYK-------YYPNLIDLAS--NCQILVV  205 (317)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~-------~~~~l~el~~--~aDvV~~  205 (317)
                      ...+.|++|.|.|. |.||+.+++.|...|++|.+.+|......       ...       ...++.++++  .+|+|+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            46789999999997 99999999999999999998887543211       111       0123556677  8998887


Q ss_pred             eccC
Q 042102          206 ACSL  209 (317)
Q Consensus       206 ~lp~  209 (317)
                      +...
T Consensus        95 ~A~~   98 (330)
T 2pzm_A           95 SAAA   98 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            7654

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.42  E-value=0.033  Score=51.69  Aligned_cols=63  Identities=17%  Similarity=0.160  Sum_probs=42.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC------CCccc-----------------cCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN------LNYKY-----------------YPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~------~~~~~-----------------~~~l~el~~~aDvV  203 (317)
                      .+|||+|+|.||+.+++.+... ++++. +.+++....      .+...                 ..+++++++++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3799999999999999998765 46764 556543221      01111                 11344566789999


Q ss_pred             EEeccCCh
Q 042102          204 VVACSLTE  211 (317)
Q Consensus       204 ~~~lp~~~  211 (317)
                      +.|+|...
T Consensus        82 ~~aTp~~~   89 (340)
T 1b7g_O           82 VDTTPNGV   89 (340)
T ss_dssp             EECCSTTH
T ss_pred             EECCCCch
Confidence            99998654

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.41  E-value=0.013  Score=50.45  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=59.2

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhc---ccCCEEEEeccCCh---------
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLA---SNCQILVVACSLTE---------  211 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~---~~aDvV~~~lp~~~---------  211 (317)
                      .+.||++.|.|. |.||+++|+.|...|++|.+.+|+...  +.....++++++   ...|+++.+.....         
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~--D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~   80 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGL--DISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVE   80 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTC--CTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCccc--CCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCC
Confidence            367899999997 689999999999999999999886541  121122333333   46798887654321         


Q ss_pred             -h-hhcc----------ccHHHHhccCCCcEEEEeCCC
Q 042102          212 -E-TQHI----------VNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       212 -~-t~~l----------i~~~~l~~mk~gavlVN~~rg  237 (317)
                       + .+..          +.+..++.|+++..+||++..
T Consensus        81 ~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             HHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence             0 0000          123455678888899999863

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.40  E-value=0.019  Score=52.11  Aligned_cols=36  Identities=25%  Similarity=0.211  Sum_probs=32.0

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|++|.|.|. |.||+.+++.|...|++|.+.+|+..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            5789999998 99999999999999999999988654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.39  E-value=0.0094  Score=55.77  Aligned_cols=86  Identities=19%  Similarity=0.263  Sum_probs=60.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc---cCC---HHHhcccCCEEEEeccCChhhhc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY---YPN---LIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~---~~~---l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .|.+|.|+|.|.+|..+++.++.+|++|++.+++++..     .+...   ..+   .+++....|+|+-++.....   
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~---  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence            47899999999999999999999999998888765432     11111   111   22333567888888764321   


Q ss_pred             cccHHHHhccCCCcEEEEeCCC
Q 042102          216 IVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg  237 (317)
                        -+..++.++++..+|.++..
T Consensus       271 --~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          271 --LDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             --HHHHHTTEEEEEEEEECCCC
T ss_pred             --HHHHHHHhccCCEEEEeccC
Confidence              24567788889888888753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.39  E-value=0.0096  Score=54.88  Aligned_cols=86  Identities=16%  Similarity=0.203  Sum_probs=60.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-----cCCHHHhc----ccCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-----YPNLIDLA----SNCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~~l~el~----~~aDvV~~~lp~~~~  212 (317)
                      .|++|.|+|.|.+|..+++.++.+|++|++.++++...     .+...     ..++.+.+    ...|+|+.+....+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            47899999999999999999999999999998765321     12111     11232222    468888887653222


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                           -+..++.|+++..+|.++..
T Consensus       244 -----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          244 -----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             -----HHHHHHHEEEEEEEEECCCC
T ss_pred             -----HHHHHHHhhcCCEEEEeccc
Confidence                 24567788999999988753

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.38  E-value=0.04  Score=51.31  Aligned_cols=85  Identities=11%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc----c---CCHHHhcc-----cCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY----Y---PNLIDLAS-----NCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~el~~-----~aDvV~~~lp  208 (317)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.+++++..     .+...    .   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            57899999999999999999999999 899988765432     12111    1   12333222     4788877765


Q ss_pred             CChhhhccccHHHHhccCCC-cEEEEeCC
Q 042102          209 LTEETQHIVNRQVINALGPK-GVLINIGR  236 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~g-avlVN~~r  236 (317)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 RLDT-----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CHHH-----HHHHHHHBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEecc
Confidence            3221     14556778888 88887763

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.38  E-value=0.0073  Score=54.45  Aligned_cols=37  Identities=19%  Similarity=0.181  Sum_probs=33.6

Q ss_pred             cccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.|+++.|+| .|.+|+++++.|...|++|.+.+|+.
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            46789999999 99999999999999999999888864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.35  E-value=0.015  Score=53.18  Aligned_cols=67  Identities=10%  Similarity=0.031  Sum_probs=45.9

Q ss_pred             cccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-C-----CccccCCHHHhcccCCEEEEeccC
Q 042102          143 TTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-L-----NYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-----~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      .....+++|.|.|. |.||+.+++.|...|++|.+.+|..... .     +.....++.++++.+|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            45688999999998 9999999999999999999988875431 1     111123466788899998877554

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.28  E-value=0.039  Score=50.46  Aligned_cols=35  Identities=23%  Similarity=0.099  Sum_probs=30.6

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ..++|.|.|. |.||+.+++.|...|.+|.+.+|+.
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3679999998 9999999999999999999988865

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.27  E-value=0.041  Score=53.07  Aligned_cols=91  Identities=14%  Similarity=0.278  Sum_probs=65.6

Q ss_pred             ccccCCeEEEEecC----------hhHHHHHHHHhhCCCEEEEeCCCCCCC----C--CccccCCHHHhcccCCEEEEec
Q 042102          144 TKFTGKSVGILGMG----------RIGTAIAKRAEAFDCIIGYNSRTEKPN----L--NYKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       144 ~~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~----~--~~~~~~~l~el~~~aDvV~~~l  207 (317)
                      ..+.|++|+|+|+-          .-...+++.|...|++|.+||+.....    .  ......++++.++.+|.|++++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t  393 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVT  393 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECS
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEcc
Confidence            34689999999984          346889999999999999999876321    1  1234467889999999999998


Q ss_pred             cCChhhhccccHHHHh-ccCCCcEEEEeCCCc
Q 042102          208 SLTEETQHIVNRQVIN-ALGPKGVLINIGRGL  238 (317)
Q Consensus       208 p~~~~t~~li~~~~l~-~mk~gavlVN~~rg~  238 (317)
                      ...+ -+. ++-+.+. .|+ +.+++|+ |+-
T Consensus       394 ~~~~-f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          394 EWKE-FRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             CCGG-GSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             CCHH-Hhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            7653 222 4544444 465 6788995 544

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.27  E-value=0.015  Score=50.51  Aligned_cols=63  Identities=14%  Similarity=0.101  Sum_probs=44.2

Q ss_pred             CCeEEEEecChhHHHHHHHH--hhCCCEEE-EeCCCCC-CC-----CCcc--ccCCHHHhccc--CCEEEEeccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRA--EAFDCIIG-YNSRTEK-PN-----LNYK--YYPNLIDLASN--CQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l--~~~G~~V~-~~~~~~~-~~-----~~~~--~~~~l~el~~~--aDvV~~~lp~~  210 (317)
                      ..+++|+|.|++|+.+++.+  ...|+++. ++|..+. ..     .+..  ...++++++++  .|.+++++|..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            45899999999999999973  45678764 6676655 21     1111  24567888764  89999999854

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.24  E-value=0.0091  Score=55.20  Aligned_cols=85  Identities=18%  Similarity=0.227  Sum_probs=56.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCcc-----ccCCHHHhc------ccCCEEEEeccC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYK-----YYPNLIDLA------SNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~-----~~~~l~el~------~~aDvV~~~lp~  209 (317)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.+++++..     .+..     ...++.+.+      ...|+|+-++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            68899999999999999999999999 899988765321     1111     012232222      146777777653


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      .+.     -...++.++++..+|.++.
T Consensus       247 ~~~-----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKA-----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEcc
Confidence            221     1345666777777777764

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.24  E-value=0.02  Score=53.43  Aligned_cols=83  Identities=10%  Similarity=0.087  Sum_probs=50.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCC-CEEEEeC--CCCCCC-C----C-------------ccc-cCCHHHhcc-cCCEEE
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFD-CIIGYNS--RTEKPN-L----N-------------YKY-YPNLIDLAS-NCQILV  204 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~--~~~~~~-~----~-------------~~~-~~~l~el~~-~aDvV~  204 (317)
                      .+|||+| .|.+|+.+++.|.... ++|.+..  +..... .    +             ... ..+++++++ .+|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            4899999 9999999999997654 5775543  321111 0    0             000 114455556 899999


Q ss_pred             EeccCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          205 VACSLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       205 ~~lp~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      +|+|...... + -+..   ++.|..+|+.+-
T Consensus        89 ~atp~~~~~~-~-a~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDLAKK-F-EPEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHHHHH-H-HHHH---HHTTCEEEECCS
T ss_pred             ECCCchHHHH-H-HHHH---HHCCCEEEECCc
Confidence            9998543211 1 1222   356888898864

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.24  E-value=0.0083  Score=56.46  Aligned_cols=63  Identities=16%  Similarity=0.190  Sum_probs=48.2

Q ss_pred             CeEEEEecC-hhHHHHHHHHhhC-CCEEE-EeCCCCCCC------CCccccCCHHHhccc--CCEEEEeccCCh
Q 042102          149 KSVGILGMG-RIGTAIAKRAEAF-DCIIG-YNSRTEKPN------LNYKYYPNLIDLASN--CQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G-~iG~~~a~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~el~~~--aDvV~~~lp~~~  211 (317)
                      .+|||||+| .+|+..+..++.. ++++. ++|+++...      .+...+.+++++++.  .|+|++++|...
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~   76 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQF   76 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHH
Confidence            489999999 9999999988775 56764 678765432      133456789999875  999999999654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.24  E-value=0.016  Score=52.41  Aligned_cols=83  Identities=19%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc---c---CCHHHhcccCCEEEEeccCChhhh
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY---Y---PNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~---~---~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .|++|.|+|. |.+|+.+++.++.+|++|++.+++++..     .+...   .   .++.+.+...|+++- ... +   
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~---  199 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K---  199 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence            4789999998 9999999999999999999888765432     12111   1   112223356787777 553 1   


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                        .-...++.|+++..+|.++.
T Consensus       200 --~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          200 --EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             --THHHHHTTEEEEEEEEEC--
T ss_pred             --HHHHHHHhhccCCEEEEEeC
Confidence              12456777888888887764

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.24  E-value=0.01  Score=56.21  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhC---------CCEEE-EeCCCCCCC------CCc-cccCCHHHhcc--cCCEEEEeccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF---------DCIIG-YNSRTEKPN------LNY-KYYPNLIDLAS--NCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~---------G~~V~-~~~~~~~~~------~~~-~~~~~l~el~~--~aDvV~~~lp~  209 (317)
                      .+|||||+|.||+.-++.++..         +++|. ++|+++...      .+. ..+.+++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            5899999999999888877653         45654 678765432      122 34678999986  57999999996


Q ss_pred             Chh
Q 042102          210 TEE  212 (317)
Q Consensus       210 ~~~  212 (317)
                      ...
T Consensus       107 ~~H  109 (412)
T 4gqa_A          107 HLH  109 (412)
T ss_dssp             GGH
T ss_pred             HHH
Confidence            543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.23  E-value=0.12  Score=49.25  Aligned_cols=105  Identities=14%  Similarity=0.155  Sum_probs=70.1

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC-----CCC-----------CC-cc-ccCCHHHh-cccCCE
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE-----KPN-----------LN-YK-YYPNLIDL-ASNCQI  202 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-----~~~-----------~~-~~-~~~~l~el-~~~aDv  202 (317)
                      +.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+.     +..           .+ .. +..+-+++ -..||+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV  292 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV  292 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence            346899999999999999999999999999987 555421     100           00 00 00111233 347998


Q ss_pred             EEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          203 LVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       203 V~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++-|..     .+.|+.+.-+.++ =.+++.-+.+.+- .++ .+.|.+..|.
T Consensus       293 liP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          293 LVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN-PEA-EAYLLGKGAL  337 (419)
T ss_dssp             EEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC-HHH-HHHHHHHTCE
T ss_pred             EEeccc-----ccccccchHhhCC-ceEEEECCCCcCC-HHH-HHHHHHCCCE
Confidence            888843     5567888777775 3578888888864 333 3566666665

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.23  E-value=0.044  Score=50.99  Aligned_cols=85  Identities=15%  Similarity=0.162  Sum_probs=59.2

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc----c---CCHHHhcc-----cCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY----Y---PNLIDLAS-----NCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~el~~-----~aDvV~~~lp  208 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .+...    .   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 899888765432     12211    1   23333322     4798888765


Q ss_pred             CChhhhccccHHHHhccCCC-cEEEEeCC
Q 042102          209 LTEETQHIVNRQVINALGPK-GVLINIGR  236 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~g-avlVN~~r  236 (317)
                      ..+ +    -...++.++++ ..+|.++-
T Consensus       271 ~~~-~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RIE-T----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CHH-H----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHH-H----HHHHHHHHhcCCCEEEEEcc
Confidence            322 1    14567788988 88888874

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.02  Score=52.79  Aligned_cols=86  Identities=13%  Similarity=0.159  Sum_probs=59.6

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----c--cCCHHHhcc-----cCCEEEEeccC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----Y--YPNLIDLAS-----NCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~--~~~l~el~~-----~aDvV~~~lp~  209 (317)
                      .|++|.|+|. |.||+.+++.++..|++|++.+++....     .+..    .  ..++.+.+.     ..|+|+.+...
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            4789999999 8999999999999999999888765431     1111    0  123443333     47888877653


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      .+.     -+..++.|+++..+|+++..
T Consensus       249 ~~~-----~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          249 EAA-----IEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHH-----HHHHTTSEEEEEEEEECCCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEeCC
Confidence            221     24566778889999988753

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.21  E-value=0.0091  Score=53.81  Aligned_cols=60  Identities=17%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             CCeEEEEec-ChhHHHHHHHHh-hCCCEEE-EeCCCCCCC-------------CCccccCCHHHhcccCCEEEEec
Q 042102          148 GKSVGILGM-GRIGTAIAKRAE-AFDCIIG-YNSRTEKPN-------------LNYKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~-~~G~~V~-~~~~~~~~~-------------~~~~~~~~l~el~~~aDvV~~~l  207 (317)
                      .++|+|+|+ |.||+.+++.+. .-|+++. ++++.....             .+.....++++++..+|+|+-..
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence            358999999 999999999876 4577765 677654321             01122456788888999999443

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.19  E-value=0.048  Score=52.72  Aligned_cols=91  Identities=11%  Similarity=0.089  Sum_probs=65.5

Q ss_pred             cccCCeEEEEecCh----------hHHHHHHHHhhCCCEEEEeCCCCCCCC------------------CccccCCHHHh
Q 042102          145 KFTGKSVGILGMGR----------IGTAIAKRAEAFDCIIGYNSRTEKPNL------------------NYKYYPNLIDL  196 (317)
Q Consensus       145 ~l~g~~vgIiG~G~----------iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------~~~~~~~l~el  196 (317)
                      .+.|++|+|+|+.-          -...+++.|...|++|.+||+......                  ......+..+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            36799999999864          788999999999999999999643210                  11223578889


Q ss_pred             cccCCEEEEeccCChhhhccccHHHH-hccCCCcEEEEeCCCc
Q 042102          197 ASNCQILVVACSLTEETQHIVNRQVI-NALGPKGVLINIGRGL  238 (317)
Q Consensus       197 ~~~aDvV~~~lp~~~~t~~li~~~~l-~~mk~gavlVN~~rg~  238 (317)
                      ++.+|.|++++...+ .+. ++.+.+ +.|+...+++|+ |+-
T Consensus       406 ~~~ad~~vi~t~~~~-f~~-~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          406 CDGAHAVVICTEWDM-FKE-LDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HTTCSEEEECSCCGG-GGG-SCHHHHHHHSCSSCEEEES-SCT
T ss_pred             HhCCcEEEEecCChh-hhc-CCHHHHHHhcCCCCEEEeC-CCc
Confidence            999999999988653 332 354444 567766668886 553

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.17  E-value=0.05  Score=50.68  Aligned_cols=85  Identities=12%  Similarity=0.130  Sum_probs=57.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc----c---CCHHHhcc-----cCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY----Y---PNLIDLAS-----NCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~el~~-----~aDvV~~~lp  208 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .+...    .   .++.+.+.     ..|+|+-+..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            57899999999999999999999999 899988765432     12111    1   22333222     4788877765


Q ss_pred             CChhhhccccHHHHhccCCC-cEEEEeCC
Q 042102          209 LTEETQHIVNRQVINALGPK-GVLINIGR  236 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~g-avlVN~~r  236 (317)
                      ..+ +    -...++.++++ ..+|.++-
T Consensus       275 ~~~-~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TAQ-T----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CHH-H----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHH-H----HHHHHHHhhcCCCEEEEECC
Confidence            322 1    14566778888 88887764

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.16  E-value=0.014  Score=55.05  Aligned_cols=65  Identities=14%  Similarity=0.112  Sum_probs=48.8

Q ss_pred             CCeEEEEecCh---hHHHHHHHHhhCC-CEEE--EeCCCCCCC------CCc---cccCCHHHhccc-------CCEEEE
Q 042102          148 GKSVGILGMGR---IGTAIAKRAEAFD-CIIG--YNSRTEKPN------LNY---KYYPNLIDLASN-------CQILVV  205 (317)
Q Consensus       148 g~~vgIiG~G~---iG~~~a~~l~~~G-~~V~--~~~~~~~~~------~~~---~~~~~l~el~~~-------aDvV~~  205 (317)
                      ..+|||||+|.   ||+..+..++..+ +++.  ++|+++...      .+.   ..+.+++++++.       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            46899999999   9999888877665 6765  568765432      233   456789999875       999999


Q ss_pred             eccCChh
Q 042102          206 ACSLTEE  212 (317)
Q Consensus       206 ~lp~~~~  212 (317)
                      ++|....
T Consensus        92 ~tp~~~H   98 (398)
T 3dty_A           92 ATPNGTH   98 (398)
T ss_dssp             ESCGGGH
T ss_pred             CCCcHHH
Confidence            9997543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.13  E-value=0.022  Score=52.85  Aligned_cols=85  Identities=24%  Similarity=0.306  Sum_probs=60.6

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------CCCccc---cCC---HHHhcccCCEEEEeccCChhhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------NLNYKY---YPN---LIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------~~~~~~---~~~---l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++.++      ..+...   ..+   +.++....|+|+-++.....  
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~--  257 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA--  257 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence            5789999999999999999999999999988876543      122211   122   22333467998888764321  


Q ss_pred             ccccHHHHhccCCCcEEEEeCC
Q 042102          215 HIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r  236 (317)
                         -...++.++++..+|.++.
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             ---SHHHHTTEEEEEEEEECSC
T ss_pred             ---HHHHHHHhccCCEEEEeCC
Confidence               2456778899999999874

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.11  E-value=0.035  Score=51.00  Aligned_cols=106  Identities=16%  Similarity=0.099  Sum_probs=66.6

Q ss_pred             CCeEEEEecChhHHH-HHHHHhhCCCEEEEeCCCCCCC-------CCccc--cCCHHHhc-ccCCEEEEe--cc-CChhh
Q 042102          148 GKSVGILGMGRIGTA-IAKRAEAFDCIIGYNSRTEKPN-------LNYKY--YPNLIDLA-SNCQILVVA--CS-LTEET  213 (317)
Q Consensus       148 g~~vgIiG~G~iG~~-~a~~l~~~G~~V~~~~~~~~~~-------~~~~~--~~~l~el~-~~aDvV~~~--lp-~~~~t  213 (317)
                      .++|.|||.|.+|.+ +|+.|+..|++|.++|....+.       .+...  -.+.+++. .++|+|+..  +| .+|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            478999999999995 9999999999999999765321       12211  12344555 579998886  33 23322


Q ss_pred             -----hc--cccH-HHHhc--cCCCcEE-EEeCCCcccCHHHHHHHHHhCC
Q 042102          214 -----QH--IVNR-QVINA--LGPKGVL-INIGRGLLVDEHELVSALLQGR  253 (317)
Q Consensus       214 -----~~--li~~-~~l~~--mk~gavl-VN~~rg~~vd~~aL~~al~~g~  253 (317)
                           ++  ++++ +.|..  ++...++ |--+.|..--..-+.+.|+...
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence                 11  3333 33332  3433344 4445788777777777787644

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.11  E-value=0.024  Score=52.40  Aligned_cols=106  Identities=9%  Similarity=0.040  Sum_probs=64.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--------CCEE-EEeCCCCCCCCC---------------c-cccC---CHHHhc-cc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--------DCII-GYNSRTEKPNLN---------------Y-KYYP---NLIDLA-SN  199 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--------G~~V-~~~~~~~~~~~~---------------~-~~~~---~l~el~-~~  199 (317)
                      .+|||||+|.||+.+++.+...        +++| .+++++......               . ....   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            5899999999999999988653        3565 466765432211               1 0223   788877 46


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG  255 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~  255 (317)
                      .|+|+.++|.. .+...--+-..+.++.|.-+|...-..+. +.+.|.++.++....
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~  142 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR  142 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence            89999999975 11111112334556677666654333332 345677766665543

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.10  E-value=0.017  Score=53.68  Aligned_cols=63  Identities=16%  Similarity=0.142  Sum_probs=42.7

Q ss_pred             CeEEEEecChhHHHHHHHHhh-CCCEEEE-eCCCCCCC------CC------------------ccccCCHHHhcccCCE
Q 042102          149 KSVGILGMGRIGTAIAKRAEA-FDCIIGY-NSRTEKPN------LN------------------YKYYPNLIDLASNCQI  202 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~------~~------------------~~~~~~l~el~~~aDv  202 (317)
                      .+|||+|+|.||+.+++.|.. -++++.+ .++.+...      .+                  .....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            379999999999999999876 4677654 44432210      00                  0001245677789999


Q ss_pred             EEEeccCCh
Q 042102          203 LVVACSLTE  211 (317)
Q Consensus       203 V~~~lp~~~  211 (317)
                      |+.|+|...
T Consensus        82 V~~atp~~~   90 (337)
T 1cf2_P           82 VIDCTPEGI   90 (337)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCchh
Confidence            999999654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.08  E-value=0.015  Score=53.60  Aligned_cols=85  Identities=24%  Similarity=0.178  Sum_probs=57.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC---C-ccc-----cCCHHHhcc-----cCCEEEEeccCCh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL---N-YKY-----YPNLIDLAS-----NCQILVVACSLTE  211 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~---~-~~~-----~~~l~el~~-----~aDvV~~~lp~~~  211 (317)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.+++.+...   . ...     ..++.+.+.     ..|+|+-+....+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  243 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA  243 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            68899999999999999999999999 8999887643210   0 110     113333322     4788877765322


Q ss_pred             hhhccccHHHHhccCCCcEEEEeCC
Q 042102          212 ETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      .     -+..++.|+++..+|.++.
T Consensus       244 ~-----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          244 A-----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             H-----HHHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHhcCCEEEEEec
Confidence            1     1455677888888888764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.08  E-value=0.046  Score=50.82  Aligned_cols=85  Identities=13%  Similarity=0.137  Sum_probs=58.6

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCcc----cc---CCHHHhcc-----cCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYK----YY---PNLIDLAS-----NCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~----~~---~~l~el~~-----~aDvV~~~lp  208 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .+..    ..   .++.+.+.     ..|+|+-+..
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 899988765432     1111    01   23333322     4788887765


Q ss_pred             CChhhhccccHHHHhccCCC-cEEEEeCC
Q 042102          209 LTEETQHIVNRQVINALGPK-GVLINIGR  236 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~g-avlVN~~r  236 (317)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       270 ~~~~-----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVKV-----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             cHHH-----HHHHHHhhccCCcEEEEEec
Confidence            3221     24567788888 88888764

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.04  E-value=0.023  Score=53.80  Aligned_cols=63  Identities=16%  Similarity=0.386  Sum_probs=44.8

Q ss_pred             ccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CC--cc---ccC---CHHHhcccCCEEEE
Q 042102          142 MTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LN--YK---YYP---NLIDLASNCQILVV  205 (317)
Q Consensus       142 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~--~~---~~~---~l~el~~~aDvV~~  205 (317)
                      ++....+++|+|+|-|..|+.+++.++.+|++|.+++ .....    ..  ..   .+.   .+.++++++|+|+.
T Consensus        18 ~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           18 QGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             ---CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             eccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            4556778999999999999999999999999998877 44321    11  11   112   25677889998864

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.04  E-value=0.014  Score=53.96  Aligned_cols=63  Identities=14%  Similarity=0.141  Sum_probs=48.1

Q ss_pred             CeEEEEecC-hhHHHHHHHHhhC--CCEE-EEeCCCCCCC------CCc-cccCCHHHhcc--cCCEEEEeccCCh
Q 042102          149 KSVGILGMG-RIGTAIAKRAEAF--DCII-GYNSRTEKPN------LNY-KYYPNLIDLAS--NCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G-~iG~~~a~~l~~~--G~~V-~~~~~~~~~~------~~~-~~~~~l~el~~--~aDvV~~~lp~~~  211 (317)
                      .+|||||+| .+|+..+..++..  ++++ .++|+++...      .+. ..+.+++++++  +.|+|++++|...
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   94 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVEL   94 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGG
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            489999999 8999999999876  5676 5778765432      122 34678999986  5899999999654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.04  E-value=0.031  Score=51.61  Aligned_cols=86  Identities=17%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----cc--CC-HHH---hc-----ccCCEEEEe
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YY--PN-LID---LA-----SNCQILVVA  206 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~--~~-l~e---l~-----~~aDvV~~~  206 (317)
                      .|.+|.|+|.|.+|..+++.++.+|++|++.+++++..     .+..    ..  .+ .++   ..     ...|+|+-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            47899999999999999999999999998887664321     1211    11  12 222   22     258999888


Q ss_pred             ccCChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          207 CSLTEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       207 lp~~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ......     -...++.++++..+|.++.+
T Consensus       248 ~g~~~~-----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNEKC-----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCHHH-----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCHHH-----HHHHHHHHhcCCEEEEEecC
Confidence            764221     14567889999999998753

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.03  E-value=0.034  Score=51.94  Aligned_cols=30  Identities=27%  Similarity=0.407  Sum_probs=24.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEEEeC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIGYNS  178 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~  178 (317)
                      .+|||+|+|.||+.+.+.|... +++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            4899999999999999998765 57765443

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.02  E-value=0.026  Score=51.67  Aligned_cols=93  Identities=18%  Similarity=0.184  Sum_probs=58.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCCC--------------CccccCCHHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPNL--------------NYKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ++|+|||.|.+|..++..+...+  -++..+|...++..              ......+-.+.++.||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            48999999999999999998766  37888987643210              001111236779999999998764322


Q ss_pred             ---h--------hcccc--HHHHhccCCCcEEEEeCCCcccCHH
Q 042102          213 ---T--------QHIVN--RQVINALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       213 ---t--------~~li~--~~~l~~mk~gavlVN~~rg~~vd~~  243 (317)
                         +        ..++.  .+.+....|+++++++  ..++|.-
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~  122 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVA--TNPVDVM  122 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC--SSSHHHH
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEe--cCchHHH
Confidence               1        11110  1122333789999998  4455443

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.02  E-value=0.041  Score=50.89  Aligned_cols=86  Identities=16%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc---cC-----CHH-Hhc----ccCCEEEEec
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY---YP-----NLI-DLA----SNCQILVVAC  207 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~---~~-----~l~-el~----~~aDvV~~~l  207 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++....     .+...   ..     ++. ++.    ...|+|+-+.
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            47899999999999999999999999 899888765421     12211   11     111 111    3589999887


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      .....     -...++.++++..+|.++-+
T Consensus       251 g~~~~-----~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          251 GAEAS-----IQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CCHHH-----HHHHHHHSCTTCEEEECSCC
T ss_pred             CChHH-----HHHHHHHhcCCCEEEEEecC
Confidence            63221     14567889999999998753

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.01  E-value=0.02  Score=53.37  Aligned_cols=65  Identities=8%  Similarity=0.121  Sum_probs=47.6

Q ss_pred             cCCeEEEEecChhHH-HHHHHHhhCCCEE-EEeCCCCCCC------CC-ccccCCHHHhccc--CCEEEEeccCCh
Q 042102          147 TGKSVGILGMGRIGT-AIAKRAEAFDCII-GYNSRTEKPN------LN-YKYYPNLIDLASN--CQILVVACSLTE  211 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~-~~a~~l~~~G~~V-~~~~~~~~~~------~~-~~~~~~l~el~~~--aDvV~~~lp~~~  211 (317)
                      ...+|||||+|.+|. ..+..++.-|+++ .++|+++...      .+ ...+.+++++++.  .|+|++++|...
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~  100 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSE  100 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHH
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHH
Confidence            346899999999995 5677777778885 4778775432      11 3346799999875  899999998543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.00  E-value=0.023  Score=52.92  Aligned_cols=98  Identities=18%  Similarity=0.225  Sum_probs=61.5

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCCC--------------CccccCCHHHhcccCCEEEEecc
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPNL--------------NYKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      +.+++|+|||. |.+|+.+|..+..+|.  +|..+|...+...              ......+..+.++.||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            45789999998 9999999998887774  7888887543210              11123577888999999999853


Q ss_pred             CChhhhcc-----c--cH-------HHHhccCCCcE-EEEeCCCcccCHHHHH
Q 042102          209 LTEETQHI-----V--NR-------QVINALGPKGV-LINIGRGLLVDEHELV  246 (317)
Q Consensus       209 ~~~~t~~l-----i--~~-------~~l~~mk~gav-lVN~~rg~~vd~~aL~  246 (317)
                      . +...++     +  |.       +.+....|+++ +++++  ..+|.-..+
T Consensus        86 ~-p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i  135 (343)
T 3fi9_A           86 A-PRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLV  135 (343)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHH
T ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHH
Confidence            2 211111     1  11       12333457785 88885  556554443

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.00  E-value=0.37  Score=44.94  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=65.3

Q ss_pred             ccccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CCccccCCHHHhcccCCEEEE
Q 042102          144 TKFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LNYKYYPNLIDLASNCQILVV  205 (317)
Q Consensus       144 ~~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~~~~~~~l~el~~~aDvV~~  205 (317)
                      ..+.|++|++||=|  ++.++.+..+..||++|.+..+..-..                .......+++|.++.+|+|..
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt  256 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYT  256 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEE
Confidence            35889999999954  799999999999999999887643111                012235789999999999875


Q ss_pred             eccC----Chh---------hhccccHHHHhcc-CCCcEEEEeC
Q 042102          206 ACSL----TEE---------TQHIVNRQVINAL-GPKGVLINIG  235 (317)
Q Consensus       206 ~lp~----~~~---------t~~li~~~~l~~m-k~gavlVN~~  235 (317)
                      -.=.    .++         ...-++.+.++.+ ||+++|.-+.
T Consensus       257 ~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          257 DVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            3211    111         1234678888764 7889988875

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=94.99  E-value=0.023  Score=54.85  Aligned_cols=110  Identities=9%  Similarity=0.041  Sum_probs=68.5

Q ss_pred             CCeEEEEecChh-HHHHHHHHhh----C-CCEEEEeCCCC--CCC---------------CC--ccccCCHHHhcccCCE
Q 042102          148 GKSVGILGMGRI-GTAIAKRAEA----F-DCIIGYNSRTE--KPN---------------LN--YKYYPNLIDLASNCQI  202 (317)
Q Consensus       148 g~~vgIiG~G~i-G~~~a~~l~~----~-G~~V~~~~~~~--~~~---------------~~--~~~~~~l~el~~~aDv  202 (317)
                      .++|+|||.|.. |..++..|..    + +-+|..||+.+  +..               ..  .....++.+.++.||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            358999999999 8876655543    3 45799999876  321               01  1123578889999999


Q ss_pred             EEEeccCChh---hh--------cc--------------------cc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          203 LVVACSLTEE---TQ--------HI--------------------VN--RQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       203 V~~~lp~~~~---t~--------~l--------------------i~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      |+++.|....   ++        ++                    +.  .+.+....|+++++|++-.-=+-..++.+..
T Consensus        87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~  166 (450)
T 1s6y_A           87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT  166 (450)
T ss_dssp             EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHC
T ss_pred             EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            9999985321   11        11                    10  1233445689999999765544445555543


Q ss_pred             HhCCceEE
Q 042102          250 LQGRLGGA  257 (317)
Q Consensus       250 ~~g~i~ga  257 (317)
                      ...++.|.
T Consensus       167 p~~rViG~  174 (450)
T 1s6y_A          167 KQEKVVGL  174 (450)
T ss_dssp             CCCCEEEC
T ss_pred             CCCCEEEe
Confidence            33355544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.98  E-value=0.044  Score=51.12  Aligned_cols=85  Identities=16%  Similarity=0.187  Sum_probs=56.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc-------cCCHHHhcc-----cCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY-------YPNLIDLAS-----NCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~-------~~~l~el~~-----~aDvV~~~lp  208 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..       ..++.+.+.     ..|+|+-+..
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            57899999999999999999999999 799998766532     12111       122333222     3787777765


Q ss_pred             CChhhhccccHHHHhccCCC-cEEEEeCC
Q 042102          209 LTEETQHIVNRQVINALGPK-GVLINIGR  236 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~g-avlVN~~r  236 (317)
                      ..+.     -...++.+++| ..++.++-
T Consensus       273 ~~~~-----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          273 NVSV-----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhccCCEEEEEcc
Confidence            3221     14556777885 77777763

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.98  E-value=0.063  Score=49.18  Aligned_cols=94  Identities=18%  Similarity=0.273  Sum_probs=60.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCC--CEEEEeCCCCCCC---------CC--ccc---cCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFD--CIIGYNSRTEKPN---------LN--YKY---YPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~---------~~--~~~---~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      ++|+|+|. |.+|+.++..|...|  -+|..+|..+...         ..  ...   ..++++.++.||+|+++.....
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            48999998 999999999998777  5788888765110         00  111   1357888999999999865322


Q ss_pred             h---hh-ccc--c----H---HHHhccCCCcEEEEeCCCcccCHHH
Q 042102          212 E---TQ-HIV--N----R---QVINALGPKGVLINIGRGLLVDEHE  244 (317)
Q Consensus       212 ~---t~-~li--~----~---~~l~~mk~gavlVN~~rg~~vd~~a  244 (317)
                      .   ++ .++  |    .   +.+....|++++|++  ..++|.-.
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            1   11 111  1    1   122233588999997  45666544

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.98  E-value=0.021  Score=50.57  Aligned_cols=37  Identities=19%  Similarity=0.177  Sum_probs=33.3

Q ss_pred             cccCCeEEEEe---cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILG---MGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG---~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.||++.|.|   .|.||+++|+.|...|++|+..+++.
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~   43 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   43 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence            47899999999   49999999999999999999888765

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.93  E-value=0.058  Score=48.12  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .++|.|.|. |.+|+.+++.|...|.+|.+.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            468999996 9999999999999999999888864

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=94.90  E-value=0.055  Score=49.85  Aligned_cols=88  Identities=14%  Similarity=0.174  Sum_probs=57.2

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCC----CCCC--------C---Cc----cccCCHHHhcccC
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRT----EKPN--------L---NY----KYYPNLIDLASNC  200 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~----~~~~--------~---~~----~~~~~l~el~~~a  200 (317)
                      .++|+|+|. |.+|+.++..|...|+       +|..+|+.    .+..        .   ..    ....++.+.++.|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            358999998 9999999999987775       78888876    2100        0   11    1135788999999


Q ss_pred             CEEEEeccCChh---hhc-cc--c----H---HHHhcc-CCCcEEEEeC
Q 042102          201 QILVVACSLTEE---TQH-IV--N----R---QVINAL-GPKGVLINIG  235 (317)
Q Consensus       201 DvV~~~lp~~~~---t~~-li--~----~---~~l~~m-k~gavlVN~~  235 (317)
                      |+|+.+......   ++. ++  |    .   +.+... ++.+++|+++
T Consensus        85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S  133 (329)
T 1b8p_A           85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG  133 (329)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            999887543221   110 11  1    1   122333 4789999997

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.90  E-value=0.037  Score=52.22  Aligned_cols=87  Identities=18%  Similarity=0.233  Sum_probs=58.9

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc-----cCCHHH----hc--ccCCEEEEecc
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY-----YPNLID----LA--SNCQILVVACS  208 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~e----l~--~~aDvV~~~lp  208 (317)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.     .++..     ..++.+    +.  ...|+|+-++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence            358899999999999999999999999 899988765432     11110     122322    22  24899988877


Q ss_pred             CChhhhccccHHHHhcc----CCCcEEEEeCC
Q 042102          209 LTEETQHIVNRQVINAL----GPKGVLINIGR  236 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~m----k~gavlVN~~r  236 (317)
                      ....+.    ...++.+    +++..++.++-
T Consensus       292 ~~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          292 VPQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             CcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            542222    2333444    99999999874

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.90  E-value=0.037  Score=51.65  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=32.4

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|++++|.|||+|.+|..+++.|...|. ++..+|+.
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            46889999999999999999999999997 67777654

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=94.85  E-value=0.036  Score=49.15  Aligned_cols=62  Identities=16%  Similarity=0.148  Sum_probs=45.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhC-CCEEEEeCCCCCCCC-----Ccc-------ccCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAF-DCIIGYNSRTEKPNL-----NYK-------YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|.|.| .|.||+.+++.|... |.+|.+..|++....     +..       ...++.++++.+|+|+.+....
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII   76 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            4789999 499999999999887 899998887654321     111       1234667899999998876643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.85  E-value=0.081  Score=46.46  Aligned_cols=37  Identities=16%  Similarity=0.350  Sum_probs=32.5

Q ss_pred             cccCCeEEEEecC-h--hHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-R--IGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~--iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ++.||++.|.|.+ .  ||+++|+.|...|++|+..+++.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            5789999999974 4  99999999999999998887764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.81  E-value=0.01  Score=49.95  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|++|.|+| .|.||+.+++.++..|++|++.+++.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999 69999999999999999999888754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.78  E-value=0.053  Score=53.48  Aligned_cols=81  Identities=20%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc--------cccCCHHHh-cccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY--------KYYPNLIDL-ASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~--------~~~~~l~el-~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      +++.|+|+|.+|+.+|+.|...|..|.+.|.+++.....        .....|+++ ++++|.++++.+.++.  +++-.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~--ni~~~  426 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDST--NIFLT  426 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHH--HHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCchH--HHHHH
Confidence            789999999999999999999999999998776543211        112234444 8899999999887643  44545


Q ss_pred             HHHhccCCCcEE
Q 042102          220 QVINALGPKGVL  231 (317)
Q Consensus       220 ~~l~~mk~gavl  231 (317)
                      ...+.+.+...+
T Consensus       427 ~~ak~l~~~~~i  438 (565)
T 4gx0_A          427 LACRHLHSHIRI  438 (565)
T ss_dssp             HHHHHHCSSSEE
T ss_pred             HHHHHHCCCCEE
Confidence            566666666333

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.71  E-value=0.044  Score=50.76  Aligned_cols=30  Identities=33%  Similarity=0.396  Sum_probs=24.1

Q ss_pred             CeEEEEecChhHHHHHHHHhh-CCCEEEE-eC
Q 042102          149 KSVGILGMGRIGTAIAKRAEA-FDCIIGY-NS  178 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~  178 (317)
                      .+|||+|+|.||+.+++.+.. -+++|.+ .+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d   35 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   35 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecC
Confidence            489999999999999999865 4577654 44

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.71  E-value=0.019  Score=54.10  Aligned_cols=62  Identities=11%  Similarity=0.065  Sum_probs=46.5

Q ss_pred             CCeEEEEecChhHHHHHHHHhhC--CCEEE-EeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAF--DCIIG-YNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ..+|||||.| +|+.-++.++..  ++++. +++++.+..      .+...+.++++++++.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            4589999999 799878877765  57764 678776432      23445678999999999999999864

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=94.70  E-value=0.033  Score=51.72  Aligned_cols=83  Identities=11%  Similarity=0.155  Sum_probs=51.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHhh-CCCEEEEe-CCC---CC-CC--------CC---ccccC--CHHHhcccCCEEEEecc
Q 042102          149 KSVGILG-MGRIGTAIAKRAEA-FDCIIGYN-SRT---EK-PN--------LN---YKYYP--NLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~-~G~~V~~~-~~~---~~-~~--------~~---~~~~~--~l~el~~~aDvV~~~lp  208 (317)
                      .+|+|+| .|.+|+.+.+.|.. -++++... +++   .. +.        .+   .....  +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            4899999 69999999999987 34566543 333   11 10        01   11111  34555589999999999


Q ss_pred             CChhhhccccHHHHh-ccCCCcEEEEeCCC
Q 042102          209 LTEETQHIVNRQVIN-ALGPKGVLINIGRG  237 (317)
Q Consensus       209 ~~~~t~~li~~~~l~-~mk~gavlVN~~rg  237 (317)
                      ...+      ++..+ ..+.|+.+|+.|.-
T Consensus        85 ~~~s------~~~~~~~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEVS------HDLAPQFLEAGCVVFDLSGA  108 (337)
T ss_dssp             HHHH------HHHHHHHHHTTCEEEECSST
T ss_pred             hHHH------HHHHHHHHHCCCEEEEcCCc
Confidence            4332      22222 24679999998753

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=94.70  E-value=0.074  Score=51.36  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=72.8

Q ss_pred             cccCCeEEEEecC----hhHHHHHHHHhhCC-CEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          145 KFTGKSVGILGMG----RIGTAIAKRAEAFD-CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       145 ~l~g~~vgIiG~G----~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      -++-++|+|||.+    .+|+.+.+.++..| ..|+.+++......+...+.++.++....|++++++|... +..++. 
T Consensus         5 l~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i~G~~~y~sl~~lp~~~Dlavi~vp~~~-~~~~v~-   82 (457)
T 2csu_A            5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPKRF-VKDTLI-   82 (457)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCHHH-HHHHHH-
T ss_pred             hcCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeECCEeccCCHHHcCCCCCEEEEecCHHH-HHHHHH-
Confidence            3567899999998    89999999999885 6788888775444555667888898889999999999432 233332 


Q ss_pred             HHHhccCCCcEEEEe-CCCcccC-----HHHHHHHHHhCCce
Q 042102          220 QVINALGPKGVLINI-GRGLLVD-----EHELVSALLQGRLG  255 (317)
Q Consensus       220 ~~l~~mk~gavlVN~-~rg~~vd-----~~aL~~al~~g~i~  255 (317)
                      +..+ ..-..+++.. +-.+.-+     ++.+.+..++..+.
T Consensus        83 e~~~-~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~  123 (457)
T 2csu_A           83 QCGE-KGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (457)
T ss_dssp             HHHH-HTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHH-cCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence            2222 2223333332 2223323     67788888877666

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.66  E-value=0.014  Score=54.31  Aligned_cols=36  Identities=19%  Similarity=0.177  Sum_probs=32.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++..
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence            578999999999999999999999999998887643

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=94.66  E-value=0.11  Score=50.23  Aligned_cols=105  Identities=9%  Similarity=0.040  Sum_probs=63.5

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCC-----CCCC-------------------C-------Ccccc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRT-----EKPN-------------------L-------NYKYY  190 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~-----~~~~-------------------~-------~~~~~  190 (317)
                      +.++.|++|.|-|+|++|+.+|+.|...|++|+ +.|.+     ++..                   .       +....
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            446899999999999999999999999999987 44421     0000                   0       00001


Q ss_pred             CCHHHh-cccCCEEEEeccCChhhhccccHHHHhcc-CCC-cEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          191 PNLIDL-ASNCQILVVACSLTEETQHIVNRQVINAL-GPK-GVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       191 ~~l~el-~~~aDvV~~~lp~~~~t~~li~~~~l~~m-k~g-avlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                       +.+++ -..||+++-|.     +.+.|+.+....+ +.+ .+++--+-+.+ ..++ .+.|.+..|.
T Consensus       327 -~~~~~~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          327 -PNEKPWGVPCTLAFPCA-----TQNDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNII  386 (470)
T ss_dssp             -SSCCTTSSCCSEEEECS-----STTCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             -cCcCeeecCccEEEecc-----ccCcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcE
Confidence             11122 23688777664     2455666665555 122 34555556664 4444 5667777775

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=94.64  E-value=0.12  Score=47.17  Aligned_cols=89  Identities=18%  Similarity=0.232  Sum_probs=61.0

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhC-CCEEEEeCCCCCC-C---------CC--ccccCCHHHhcccCCEEEEecc
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAF-DCIIGYNSRTEKP-N---------LN--YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~-G~~V~~~~~~~~~-~---------~~--~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .+.|.||++||=   |++.++.+..+..| |++|.+..|..-. .         .+  .....+++++++++|+|....-
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~  227 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRI  227 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCc
Confidence            378999999998   48999999999999 9999888764221 1         11  2235789999999999886421


Q ss_pred             C-----C-hhh-----hccccHHHHhccCCCcEEEEeC
Q 042102          209 L-----T-EET-----QHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       209 ~-----~-~~t-----~~li~~~~l~~mk~gavlVN~~  235 (317)
                      -     + .+-     ...++++.++.  ++++|.-+.
T Consensus       228 q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~l  263 (306)
T 4ekn_B          228 QKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPL  263 (306)
T ss_dssp             CGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCS
T ss_pred             ccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCC
Confidence            1     1 110     13356666665  667766664

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.63  E-value=0.031  Score=48.99  Aligned_cols=93  Identities=16%  Similarity=0.156  Sum_probs=58.4

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCcc------ccCCHHHhcc-------cCCEEEEeccCC-
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK------YYPNLIDLAS-------NCQILVVACSLT-  210 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~------~~~~l~el~~-------~aDvV~~~lp~~-  210 (317)
                      .-||++.|.|. |.||+.+|+.|...|++|++.+|+........      ...+++++++       ..|+|+.+.... 
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~   99 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWS   99 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCC
Confidence            34789999996 67999999999999999999888765432111      1112333333       458888765421 


Q ss_pred             ------hhh----hcc----------ccHHHHhccCCCcEEEEeCCCc
Q 042102          211 ------EET----QHI----------VNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       211 ------~~t----~~l----------i~~~~l~~mk~gavlVN~~rg~  238 (317)
                            ..+    ...          +.+..+..|+++..+||++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A          100 GGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence                  111    011          1234556777788899998743

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.62  E-value=0.03  Score=51.40  Aligned_cols=85  Identities=16%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-----cCCHHHhc----ccCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-----YPNLIDLA----SNCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~~l~el~----~~aDvV~~~lp~~~~  212 (317)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++.     .+...     ..++.+.+    ...|+++.+....+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            57899999999999999999999999999988765431     12110     12333222    257887776542221


Q ss_pred             hhccccHHHHhccCCCcEEEEeCC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                           -...++.++++..++.++-
T Consensus       246 -----~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          246 -----FSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             -----HHHHHHHEEEEEEEEECSC
T ss_pred             -----HHHHHHHhccCCEEEEeCC
Confidence                 2456677888888888864

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.61  E-value=0.05  Score=48.56  Aligned_cols=34  Identities=24%  Similarity=0.119  Sum_probs=30.3

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999996 9999999999998899998888765

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.61  E-value=0.025  Score=52.39  Aligned_cols=29  Identities=28%  Similarity=0.268  Sum_probs=23.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhC---CCEEEEe
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF---DCIIGYN  177 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~  177 (317)
                      .+|||+|+|.||+.+.+.|...   .++|.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivai   32 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAI   32 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEE
Confidence            4799999999999999998654   4776644

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=94.60  E-value=0.024  Score=53.99  Aligned_cols=65  Identities=18%  Similarity=0.230  Sum_probs=47.8

Q ss_pred             CCeEEEEecCh---hHHHHHHHHhhCC-CEEE--EeCCCCCCC------CCc---cccCCHHHhccc-------CCEEEE
Q 042102          148 GKSVGILGMGR---IGTAIAKRAEAFD-CIIG--YNSRTEKPN------LNY---KYYPNLIDLASN-------CQILVV  205 (317)
Q Consensus       148 g~~vgIiG~G~---iG~~~a~~l~~~G-~~V~--~~~~~~~~~------~~~---~~~~~l~el~~~-------aDvV~~  205 (317)
                      ..+|||||+|.   ||+..+..++..+ +++.  ++|+++...      .+.   ..+.+++++++.       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999888877665 6764  568765432      122   356789999876       999999


Q ss_pred             eccCChh
Q 042102          206 ACSLTEE  212 (317)
Q Consensus       206 ~lp~~~~  212 (317)
                      ++|....
T Consensus       117 ~tp~~~H  123 (417)
T 3v5n_A          117 VTPNHVH  123 (417)
T ss_dssp             CSCTTSH
T ss_pred             CCCcHHH
Confidence            9997643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.56  E-value=0.015  Score=56.25  Aligned_cols=64  Identities=19%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcc-------ccCCHHHh-cccCCEEEEeccCCh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYK-------YYPNLIDL-ASNCQILVVACSLTE  211 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~-------~~~~l~el-~~~aDvV~~~lp~~~  211 (317)
                      .++|-|+|+|.+|+.+|+.|...|.+|.+.|..++..      .+..       ....|+++ +++||.++.+.+.++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De   80 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE   80 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence            5789999999999999999999999999998765431      1111       11225554 789998887766543

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.54  E-value=0.044  Score=49.21  Aligned_cols=61  Identities=13%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             CCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------CccccCCHHHhcccCCEEEEeccC
Q 042102          148 GKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      +++|.|.| .|.||+.+++.|...|.+|.+.+|+.....         +.. ..++.++++.+|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47899999 699999999999999999999888733211         111 23466788899998877654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.53  E-value=0.033  Score=48.18  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc--------cccCCHHHhc---------ccCCEEEEecc
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY--------KYYPNLIDLA---------SNCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~--------~~~~~l~el~---------~~aDvV~~~lp  208 (317)
                      .||++.|.|. |.||+.+++.|...|++|+..+|+.......        ....++++++         ...|+|+.+.-
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   81 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAG   81 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence            5788999985 7999999999999999999888876442210        0011223333         36798887754


Q ss_pred             CC-------hhh----hccc----------cHHHHhccCCCcEEEEeCCCc
Q 042102          209 LT-------EET----QHIV----------NRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       209 ~~-------~~t----~~li----------~~~~l~~mk~gavlVN~~rg~  238 (317)
                      ..       +.+    ...+          .+..++.|+++..+||++...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  132 (236)
T 1ooe_A           82 GWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  132 (236)
T ss_dssp             CCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            21       111    1111          234556676677899998743

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.53  E-value=0.13  Score=50.00  Aligned_cols=94  Identities=12%  Similarity=0.158  Sum_probs=66.7

Q ss_pred             cccCCeEEEEecC----------hhHHHHHHHHhhCCCEEEEeCCCCCCC--C--------------CccccCCHHHhcc
Q 042102          145 KFTGKSVGILGMG----------RIGTAIAKRAEAFDCIIGYNSRTEKPN--L--------------NYKYYPNLIDLAS  198 (317)
Q Consensus       145 ~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~--~--------------~~~~~~~l~el~~  198 (317)
                      .+.|++|+|+|+-          .-...+++.|...|++|.+||+.....  .              ......++.+.++
T Consensus       325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (478)
T 2y0c_A          325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAAR  404 (478)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTT
T ss_pred             cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHh
Confidence            5689999999984          356789999999999999999975321  0              1223457889999


Q ss_pred             cCCEEEEeccCChhhhccccHHHH-hccCCCcEEEEeCCCcccCHH
Q 042102          199 NCQILVVACSLTEETQHIVNRQVI-NALGPKGVLINIGRGLLVDEH  243 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l-~~mk~gavlVN~~rg~~vd~~  243 (317)
                      .+|+|+++....+ .+. ++.+.+ +.|+ +.+++|+ |+ +.|.+
T Consensus       405 ~ad~~vi~t~~~~-f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          405 DADALVIVTEWKI-FKS-PDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             TCSEEEECSCCGG-GGS-CCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             CCCEEEEecCChH-hhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            9999999988653 332 354444 4555 5888887 44 34543

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=94.51  E-value=0.17  Score=48.19  Aligned_cols=105  Identities=15%  Similarity=0.156  Sum_probs=67.5

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC-----CC-----------CCCc------------cccCCH
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE-----KP-----------NLNY------------KYYPNL  193 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-----~~-----------~~~~------------~~~~~l  193 (317)
                      +.++.|++|.|.|+|++|+.+++.|..+|++|+ +.|.+.     +.           ..+.            ....+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            446899999999999999999999999999987 444421     00           0000            111022


Q ss_pred             HHhc-ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          194 IDLA-SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       194 ~el~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++++ ..||+++-|.-     .+.|+.+..+.++ =.+++--+-+.+- .++ .+.|.+..+.
T Consensus       285 ~~~~~~~~Dil~P~A~-----~~~I~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPTT-PEA-ERILYERGVV  339 (421)
T ss_dssp             TGGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCBC-HHH-HHHHHTTTCE
T ss_pred             hhhhcCCccEEEecCc-----CCccchhhHHHcC-ceEEEecCCCcCC-HHH-HHHHHHCCCE
Confidence            4443 46898877742     4556666666664 3556666777754 333 3667777776

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.49  E-value=0.11  Score=46.74  Aligned_cols=37  Identities=16%  Similarity=0.102  Sum_probs=33.1

Q ss_pred             ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      ..+.||++.|.|. |.||+++|+.|...|++|++.++.
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999996 689999999999999999988775

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.49  E-value=0.1  Score=48.69  Aligned_cols=82  Identities=22%  Similarity=0.269  Sum_probs=54.1

Q ss_pred             CCeEEEEe-cChhHHHHHHHHhhCCC-EEEEe-CCCCC-CC---------CCcc-ccCCHHHhcccCCEEEEeccCChhh
Q 042102          148 GKSVGILG-MGRIGTAIAKRAEAFDC-IIGYN-SRTEK-PN---------LNYK-YYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       148 g~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~-~~~~~-~~---------~~~~-~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      -.+||||| .|.+|+.+.++|...-. ++... +++.. +.         .... ...+.++++.++|++++|+|...+ 
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~s-   91 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-   91 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHHH-
Confidence            35899997 69999999999987643 55543 32211 11         0111 112455666889999999996543 


Q ss_pred             hccccHHHHhccCCCcEEEEeCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~r  236 (317)
                           ++....+ .|..+||.|.
T Consensus        92 -----~~~~~~~-~g~~VIDlSs  108 (351)
T 1vkn_A           92 -----YDLVREL-KGVKIIDLGA  108 (351)
T ss_dssp             -----HHHHTTC-CSCEEEESSS
T ss_pred             -----HHHHHHh-CCCEEEECCh
Confidence                 4455555 7999999985

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.45  E-value=0.025  Score=52.14  Aligned_cols=36  Identities=28%  Similarity=0.349  Sum_probs=32.5

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|++|.|+|. |.||..+++.++.+|++|++.+++.+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~  195 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA  195 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            5889999998 99999999999999999998887654

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.45  E-value=0.077  Score=49.30  Aligned_cols=83  Identities=18%  Similarity=0.083  Sum_probs=48.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEEEe-CCCCCCC------C--C------------------ccccCCHHHhcccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIGYN-SRTEKPN------L--N------------------YKYYPNLIDLASNC  200 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~------~--~------------------~~~~~~l~el~~~a  200 (317)
                      .+|||+|+|.||+.+++.+... +++|.+. +.+++..      .  .                  .....+.++++..+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            3899999999999999998765 5776544 3321110      0  0                  00011344556789


Q ss_pred             CEEEEeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      |+|+.|+|.....+.   .+ -..++.|..+|..+
T Consensus        83 DiV~eatg~~~s~~~---a~-~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIGKQN---LE-NIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHHHHH---HH-HTTTTTTCEEEECT
T ss_pred             CEEEECCCccccHHH---HH-HHHHHCCCEEEECC
Confidence            999999885532111   10 13456676655443

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=94.45  E-value=0.082  Score=50.84  Aligned_cols=37  Identities=11%  Similarity=0.190  Sum_probs=32.3

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR  179 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~  179 (317)
                      +.++.|+||.|-|+|++|+.+|+.|...|++|+ +.|.
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~  271 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDS  271 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECS
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            456899999999999999999999999999975 5553

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.42  E-value=0.023  Score=53.07  Aligned_cols=85  Identities=18%  Similarity=0.293  Sum_probs=59.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCcc-----ccCCHHHhcc--------cCCEEEEec
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYK-----YYPNLIDLAS--------NCQILVVAC  207 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~-----~~~~l~el~~--------~aDvV~~~l  207 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++++..     .++.     ...++.+.+.        ..|+|+-+.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            47899999999999999999999999 898888765431     1211     1123434333        378888776


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ... ++    -...++.++++..+|.++-
T Consensus       262 G~~-~~----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GVA-ET----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CCH-HH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCH-HH----HHHHHHHhccCCEEEEEec
Confidence            522 21    2456778889999888874

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.42  E-value=0.037  Score=46.60  Aligned_cols=63  Identities=16%  Similarity=0.045  Sum_probs=44.4

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCC--EEEEeCCCCCCC-CCcc-ccCC------HHHhcccCCEEEEeccCCh
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-LNYK-YYPN------LIDLASNCQILVVACSLTE  211 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-~~~~-~~~~------l~el~~~aDvV~~~lp~~~  211 (317)
                      .+++|.|.| .|.||+.+++.|...|.  +|.+.+|++... .... ...+      +.+++  +|+|+.+.....
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~~   77 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTTI   77 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCCH
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhh--hcEEEECeeecc
Confidence            467999999 79999999999999998  999888876431 1111 1112      33334  899988876543

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=94.41  E-value=0.019  Score=53.37  Aligned_cols=63  Identities=14%  Similarity=0.134  Sum_probs=44.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--------CCEE-EEeCCCCCCC------CC-ccccCCHHHhccc--CCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--------DCII-GYNSRTEKPN------LN-YKYYPNLIDLASN--CQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--------G~~V-~~~~~~~~~~------~~-~~~~~~l~el~~~--aDvV~~~lp~~  210 (317)
                      .+|||||+|.||+.-++.++..        +++| .++|++++..      .+ ...+.+++++++.  .|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            5899999999999877766542        2355 4678765432      12 2346789999864  79999999965


Q ss_pred             h
Q 042102          211 E  211 (317)
Q Consensus       211 ~  211 (317)
                      .
T Consensus        87 ~   87 (390)
T 4h3v_A           87 S   87 (390)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=94.40  E-value=0.061  Score=53.62  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             cEEEeCCCC-CcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-
Q 042102           95 IRVANTPDV-LTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-  172 (317)
Q Consensus        95 I~v~n~~~~-~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-  172 (317)
                      -++.+-... .....||.+.-+-|-+.|-          ..|....   ...+++++|.|||+|.+|..+|+.|...|. 
T Consensus       285 ~~~~~l~~~~dp~~la~~~~~Lnlklm~w----------Rllp~~g---~ekL~~arVLIVGaGGLGs~vA~~La~aGVG  351 (615)
T 4gsl_A          285 PRVVDLSSLLDPLKIADQSVDLNLKLMKW----------RILPDLN---LDIIKNTKVLLLGAGTLGCYVSRALIAWGVR  351 (615)
T ss_dssp             CEEEECHHHHCHHHHHHHHHHHHHHHHHH----------HTCTTCC---HHHHHTCEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             eeEEeccccCCHHHHHhhhhhhhhHHHHH----------hhcchhh---HHHHhCCeEEEECCCHHHHHHHHHHHHcCCC
Confidence            455554332 5667787777665554332          1222110   136899999999999999999999999998 


Q ss_pred             EEEEeCCC
Q 042102          173 IIGYNSRT  180 (317)
Q Consensus       173 ~V~~~~~~  180 (317)
                      ++..+|..
T Consensus       352 ~ItLvD~D  359 (615)
T 4gsl_A          352 KITFVDNG  359 (615)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            78777764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.39  E-value=0.065  Score=49.64  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=49.1

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCC-CEEEEeCCCCCCC-------CCccc-------cCCHHHhcccCCEEEEecc
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFD-CIIGYNSRTEKPN-------LNYKY-------YPNLIDLASNCQILVVACS  208 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~~~~~~~~-------~~~~~-------~~~l~el~~~aDvV~~~lp  208 (317)
                      .+.+++|.|.|. |.||+.+++.|...| .+|.+.+|.....       .....       ..++.++++.+|+|+.+..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            578999999996 999999999999999 9999998865431       11111       1235567889999887765


Q ss_pred             CC
Q 042102          209 LT  210 (317)
Q Consensus       209 ~~  210 (317)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=94.39  E-value=0.054  Score=50.25  Aligned_cols=29  Identities=34%  Similarity=0.430  Sum_probs=23.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEEEe
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIGYN  177 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~  177 (317)
                      .+|||+|+|.||+.+++.+... +++|.+.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI   33 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAV   33 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEE
Confidence            3899999999999999998765 5676543

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.38  E-value=0.06  Score=53.59  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  179 (317)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~  359 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN  359 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            56899999999999999999999999998 6877764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=94.38  E-value=0.019  Score=50.69  Aligned_cols=60  Identities=15%  Similarity=0.117  Sum_probs=42.7

Q ss_pred             eEEEEec-ChhHHHHHHHHhhC--CCEEEEeCCCCCCCC-----Ccc-------ccCCHHHhcccCCEEEEeccC
Q 042102          150 SVGILGM-GRIGTAIAKRAEAF--DCIIGYNSRTEKPNL-----NYK-------YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       150 ~vgIiG~-G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDvV~~~lp~  209 (317)
                      +|.|.|. |.||+.+++.|...  |++|.+.+|++....     +..       ...++.++++.+|+|+.+...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4788887 99999999999988  999998887654321     111       112466788899998876553

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.37  E-value=0.075  Score=47.27  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=33.4

Q ss_pred             ccccCCeEEEEec-Ch--hHHHHHHHHhhCCCEEEEeCCCC
Q 042102          144 TKFTGKSVGILGM-GR--IGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~--iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ..+.||++.|.|. |.  ||+++|+.|...|++|++.+++.
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            4689999999996 44  99999999999999999888765

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.33  E-value=0.14  Score=45.23  Aligned_cols=37  Identities=16%  Similarity=-0.012  Sum_probs=33.0

Q ss_pred             ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      ..+.||++.|.|. |.||+.+|+.|...|++|++.+++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            4689999999997 579999999999999999988775

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=94.33  E-value=0.038  Score=51.20  Aligned_cols=29  Identities=34%  Similarity=0.396  Sum_probs=23.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEEEe
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIGYN  177 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~  177 (317)
                      .+|||+|+|.||+.+.+.|..- .++|.+.
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivai   31 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAV   31 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEE
Confidence            3799999999999999998754 4676544

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.33  E-value=0.032  Score=49.24  Aligned_cols=62  Identities=13%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCC--c-------cccCCHHHhcccCCEEEEecc
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN--Y-------KYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~--~-------~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .+|+|.|.| .|.||+.+++.|...|++|...+|+......  .       ....++.+++++.|+|+.+..
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag   73 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGG   73 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence            467899999 6999999999999999999998887644321  1       112245678889998887754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.31  E-value=0.071  Score=49.34  Aligned_cols=86  Identities=19%  Similarity=0.121  Sum_probs=58.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC-----C--Cc-ccc------CCHHH----hc--ccCCEEEE
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN-----L--NY-KYY------PNLID----LA--SNCQILVV  205 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~-----~--~~-~~~------~~l~e----l~--~~aDvV~~  205 (317)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.++++++.     .  .. ...      .++.+    +.  ...|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            478999999999999999999999997 88877654321     0  00 000      11111    11  25899988


Q ss_pred             eccCChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          206 ACSLTEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       206 ~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      ++.... +    -...++.++++..+|.++-.
T Consensus       259 ~~g~~~-~----~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          259 CTGVES-S----IAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             CSCCHH-H----HHHHHHHSCTTCEEEECCCC
T ss_pred             CCCChH-H----HHHHHHHhcCCCEEEEEccC
Confidence            876322 1    14567889999999998753

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=94.31  E-value=0.053  Score=47.07  Aligned_cols=94  Identities=11%  Similarity=0.106  Sum_probs=58.3

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc--------cccCCHHHhc---------ccCCEEEEe
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY--------KYYPNLIDLA---------SNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~--------~~~~~l~el~---------~~aDvV~~~  206 (317)
                      ...||++.|.|. |.||+.+++.|...|++|+..+|+.......        ....++++++         ...|+++.+
T Consensus         4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~   83 (241)
T 1dhr_A            4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCV   83 (241)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEc
Confidence            356889999985 6899999999999999999888875432210        0111233333         267988877


Q ss_pred             ccCC-------hhh----hcc----------ccHHHHhccCCCcEEEEeCCCc
Q 042102          207 CSLT-------EET----QHI----------VNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       207 lp~~-------~~t----~~l----------i~~~~l~~mk~gavlVN~~rg~  238 (317)
                      .-..       +.+    ...          +.+..++.|+++..+||++...
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~  136 (241)
T 1dhr_A           84 AGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  136 (241)
T ss_dssp             CCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             ccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence            5421       110    111          1134456677678899998743

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=94.27  E-value=0.053  Score=48.73  Aligned_cols=64  Identities=16%  Similarity=0.141  Sum_probs=43.6

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-Cc-------cccCCHHHhccc--CCEEEEeccCC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-NY-------KYYPNLIDLASN--CQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~-------~~~~~l~el~~~--aDvV~~~lp~~  210 (317)
                      ..++|.|.|. |.||+.+++.|...|++|.+.+|...... ..       ....++.++++.  .|+|+.+....
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   85 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS   85 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence            3468888875 89999999999999999998887654310 11       111234566665  89888776543

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.22  E-value=0.044  Score=48.94  Aligned_cols=61  Identities=11%  Similarity=0.044  Sum_probs=46.1

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCC-CEEEEeCCCCCCC-------CCcc-------ccCCHHHhcccCCEEEEecc
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFD-CIIGYNSRTEKPN-------LNYK-------YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~~~~~~~~-------~~~~-------~~~~l~el~~~aDvV~~~lp  208 (317)
                      +++|.|.|. |.||+.+++.|...| ++|.+.+|++...       .+..       ...++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999998 999999999999888 9999888875431       1111       12246678899999988764

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.19  E-value=0.05  Score=49.87  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             CeEEEEecChhHHHHHHHHhh--CCCEE-EEeCCCCCC-C------CCcc-ccCCHHHhc-----ccCCEEEEeccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEA--FDCII-GYNSRTEKP-N------LNYK-YYPNLIDLA-----SNCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~--~G~~V-~~~~~~~~~-~------~~~~-~~~~l~el~-----~~aDvV~~~lp~  209 (317)
                      .+|||||+|.||+.+++.+..  -++++ .++|+++.. .      .+.. ...+.++++     .+.|+|+.++|.
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~   81 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA   81 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence            589999999999999999843  45665 467776544 1      1221 234567775     458999999993

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=94.16  E-value=0.23  Score=48.25  Aligned_cols=101  Identities=16%  Similarity=0.267  Sum_probs=67.5

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-----CC-------------------CccccCCHHH-hccc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-----NL-------------------NYKYYPNLID-LASN  199 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-----~~-------------------~~~~~~~l~e-l~~~  199 (317)
                      ++.|+||.|-|+|++|+..|+.|..+|++|+..+.+...     ..                   +.....+  + +-..
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~--~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS--CGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc--cccccc
Confidence            589999999999999999999999999998764321100     00                   0001111  2 2346


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ||+++-|.-     .+.|+.+..+.++ -.+++-.+.+.+ ..++ .+.|.+..|.
T Consensus       319 ~DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          319 CDILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNIM  366 (501)
T ss_dssp             CSEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ceEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCCE
Confidence            998877633     5678888777776 456677777864 4444 4667777775

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.16  E-value=0.027  Score=51.90  Aligned_cols=85  Identities=20%  Similarity=0.251  Sum_probs=55.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhC--CCEEEEeCCCCCCC-----CCccccCC-------HHHhcc--cCCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAF--DCIIGYNSRTEKPN-----LNYKYYPN-------LIDLAS--NCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~-----~~~~~~~~-------l~el~~--~aDvV~~~lp~~  210 (317)
                      .|.+|.|+|.|.+|...++.++.+  |++|++.+++.++.     .+.....+       .+++..  ..|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            688999999999999999999999  99999998765332     11111111       111211  467777776532


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      +.     -+..++.++++..+|.++.
T Consensus       250 ~~-----~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          250 ET-----TYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHhhcCCEEEEeCC
Confidence            11     1345667777777777763

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=94.14  E-value=0.19  Score=46.23  Aligned_cols=89  Identities=6%  Similarity=-0.069  Sum_probs=64.5

Q ss_pred             cccCCeEEE-----EecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----CccccCCHHHhcccCCEEEEeccCC--h-
Q 042102          145 KFTGKSVGI-----LGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYKYYPNLIDLASNCQILVVACSLT--E-  211 (317)
Q Consensus       145 ~l~g~~vgI-----iG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDvV~~~lp~~--~-  211 (317)
                      .+. .+|++     +|=+++.++.+..+..||++|.+..+..-...     ......+++++++++|+|..-.=..  . 
T Consensus       166 ~l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~  244 (324)
T 1js1_X          166 RPK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGD  244 (324)
T ss_dssp             SCE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTT
T ss_pred             Cee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCc
Confidence            366 89999     99999999999999999999988876433221     2344678999999999998732210  0 


Q ss_pred             --------hhhccccHHHHhccCCCcEEEEeC
Q 042102          212 --------ETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       212 --------~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                              .....++++.++.+| +++|.-+.
T Consensus       245 ~~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcL  275 (324)
T 1js1_X          245 NYGQILSTDRNWTVGDRQMAVTN-NAYFMHCL  275 (324)
T ss_dssp             CTTCCCCCCTTSSBCHHHHTTSS-SCEEECCS
T ss_pred             cccchHHHhcCcccCHHHHHhcC-CcEEECCC
Confidence                    012346777777777 77777764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=94.14  E-value=0.059  Score=46.53  Aligned_cols=61  Identities=13%  Similarity=0.031  Sum_probs=43.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCcc-----ccCCHHHhcc----cCCEEEEeccC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK-----YYPNLIDLAS----NCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-----~~~~l~el~~----~aDvV~~~lp~  209 (317)
                      |++.|.|. |.||+.+++.|...|++|.+.+|+........     ...+++++++    ..|+|+.+...
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            47889987 99999999999999999999888654321110     1123445554    78998877543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.12  E-value=0.09  Score=47.30  Aligned_cols=60  Identities=18%  Similarity=0.241  Sum_probs=42.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC---------CCcc-------ccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN---------LNYK-------YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~-------~~~~l~el~~~aDvV~~~lp  208 (317)
                      ++|.|.|. |.+|+.+++.|...|++|.+.+|+....         .+..       ...++.++++.+|+|+.+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            58999995 9999999999999999999888765311         1111       11235566777787776654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=94.12  E-value=0.029  Score=49.40  Aligned_cols=37  Identities=22%  Similarity=0.404  Sum_probs=33.2

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+.||++.|.|.   |.||+.+|+.|...|++|+..+|+.
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   44 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            578999999998   6999999999999999999888765

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=94.05  E-value=0.092  Score=46.74  Aligned_cols=38  Identities=16%  Similarity=0.097  Sum_probs=33.7

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +|+||++.|-|.+ .||+++|+.|...|++|+..+|+..
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP   46 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence            5899999999975 5999999999999999998888654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.02  E-value=0.021  Score=52.52  Aligned_cols=81  Identities=10%  Similarity=0.054  Sum_probs=55.0

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Cccc----cC---CHHHh-cccCCEEEEeccCChhhhc
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NYKY----YP---NLIDL-ASNCQILVVACSLTEETQH  215 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~----~~---~l~el-~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+++.|+|+|.+|+.+++.|...|. |.+.+++++...    +...    ..   .++++ +++||.++++.+.++.  +
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~--n  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE--T  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH--H
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH--H
Confidence            5689999999999999999999999 999988764321    1110    11   24445 7889999999876543  3


Q ss_pred             cccHHHHhccCCCcEE
Q 042102          216 IVNRQVINALGPKGVL  231 (317)
Q Consensus       216 li~~~~l~~mk~gavl  231 (317)
                      +.-....+.+.+...+
T Consensus       192 ~~~~~~ar~~~~~~~i  207 (336)
T 1lnq_A          192 IHCILGIRKIDESVRI  207 (336)
T ss_dssp             HHHHHHHHTTCTTSEE
T ss_pred             HHHHHHHHHHCCCCeE
Confidence            3334455566665333

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.01  E-value=0.047  Score=49.66  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=53.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------------C--cc-ccCCHHHhcccCCEEEEecc--
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------------N--YK-YYPNLIDLASNCQILVVACS--  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~--~~-~~~~l~el~~~aDvV~~~lp--  208 (317)
                      +||+|||.|.||+.+|-.|+..+.  ++..+|.......             .  .. ...+-.+.++.||+|++..-  
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            589999999999999998876664  7888887643210             0  00 11222467899999998753  


Q ss_pred             CChh-hhc-cc--cH-------HHHhccCCCcEEEEeC
Q 042102          209 LTEE-TQH-IV--NR-------QVINALGPKGVLINIG  235 (317)
Q Consensus       209 ~~~~-t~~-li--~~-------~~l~~mk~gavlVN~~  235 (317)
                      -.|. ||. ++  |.       +.+..-.|+++++.++
T Consensus        81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs  118 (294)
T 2x0j_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            2221 221 22  21       1233346788888774

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=94.00  E-value=0.13  Score=45.47  Aligned_cols=64  Identities=20%  Similarity=0.130  Sum_probs=45.0

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCcc-------ccCCHHHhcc-------cCCEEEEecc
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK-------YYPNLIDLAS-------NCQILVVACS  208 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-------~~~~l~el~~-------~aDvV~~~lp  208 (317)
                      .+.||++.|.|. |.||+.+++.|...|++|++.+|+........       ...+++++++       ..|+|+.+..
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag   83 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAG   83 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            478999999985 78999999999999999998887654321111       1112333333       6899888754

>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}

Probab=93.99  E-value=0.23  Score=43.92  Aligned_cols=102  Identities=10%  Similarity=0.064  Sum_probs=65.9

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHH-HhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLI-DLASNCQILVVACSLTEETQHIVNRQVINA  224 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~-el~~~aDvV~~~lp~~~~t~~li~~~~l~~  224 (317)
                      ..+++|++||+-.   .+.++++.. +++.++|+++............+ +++++||+|++.  .+.=..+-| .+.++.
T Consensus       114 ~~~~kV~vIG~~p---~l~~~l~~~-~~v~V~d~~p~~~~~~~~~~~~e~~~l~~~D~v~iT--GsTlvN~Ti-~~lL~~  186 (249)
T 3npg_A          114 DEIKRIAIIGNMP---PVVRTLKEK-YEVYVFERNMKLWDRDTYSDTLEYHILPEVDGIIAS--ASCIVNGTL-DMILDR  186 (249)
T ss_dssp             SCCSEEEEESCCH---HHHHHHTTT-SEEEEECCSGGGCCSSEECGGGHHHHGGGCSEEEEE--TTHHHHTCH-HHHHHH
T ss_pred             cCCCEEEEECCCH---HHHHHHhcc-CCEEEEECCCcccCCCCCChhHHHhhhccCCEEEEE--eeeeccCCH-HHHHHh
Confidence            3458999999976   678888877 89999999876421112223344 589999999887  333222222 356777


Q ss_pred             cCCCcEEEEeCCCc-------------------ccCHHHHHHHHHhCCc
Q 042102          225 LGPKGVLINIGRGL-------------------LVDEHELVSALLQGRL  254 (317)
Q Consensus       225 mk~gavlVN~~rg~-------------------~vd~~aL~~al~~g~i  254 (317)
                      .|++..+|=+|-..                   +.|.+.+++.++.|.-
T Consensus       187 ~~~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i~~G~~  235 (249)
T 3npg_A          187 AKKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLKLGSF  235 (249)
T ss_dssp             CSSCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHHHHTCH
T ss_pred             CcccCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHHHcccc
Confidence            77776555544211                   2466777777777653

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.98  E-value=0.048  Score=46.92  Aligned_cols=64  Identities=16%  Similarity=0.072  Sum_probs=47.0

Q ss_pred             ccCCeEEEEe-cChhHHHHHHHHhhC--CCEEEEeCCCCCCC----CCc-------cccCCHHHhcccCCEEEEeccC
Q 042102          146 FTGKSVGILG-MGRIGTAIAKRAEAF--DCIIGYNSRTEKPN----LNY-------KYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~----~~~-------~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ..+++|.|.| .|.||+.+++.|...  |++|...+|++...    ...       ....++.++++++|+|+.+...
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            3578999999 599999999999988  89999888764321    011       1123466788899999887653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=93.97  E-value=0.075  Score=47.84  Aligned_cols=61  Identities=15%  Similarity=0.191  Sum_probs=43.6

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC-CC-------------CCCcc-------ccCCHHHhcccCCEEEE
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE-KP-------------NLNYK-------YYPNLIDLASNCQILVV  205 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~-~~-------------~~~~~-------~~~~l~el~~~aDvV~~  205 (317)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+. ..             ..+..       ...++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            468999995 9999999999999999999888865 11             01111       11235667778888777


Q ss_pred             ecc
Q 042102          206 ACS  208 (317)
Q Consensus       206 ~lp  208 (317)
                      +..
T Consensus        84 ~a~   86 (321)
T 3c1o_A           84 ALP   86 (321)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            655

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.96  E-value=0.13  Score=49.83  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             cccCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCC---------CC-------ccccCCHHHhcc
Q 042102          145 KFTGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPN---------LN-------YKYYPNLIDLAS  198 (317)
Q Consensus       145 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~-------~~~~~~l~el~~  198 (317)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+||+.....         .+       .....++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            468999999997          4567889999999999999999875321         00       122356788999


Q ss_pred             cCCEEEEeccCChhhhccccHHHH-hccCCCcEEEEeCCCcccCHHHH
Q 042102          199 NCQILVVACSLTEETQHIVNRQVI-NALGPKGVLINIGRGLLVDEHEL  245 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l-~~mk~gavlVN~~rg~~vd~~aL  245 (317)
                      .+|.|+++....+ .+. ++.+.+ +.|+...+++|+ |+ +.|.+.+
T Consensus       412 ~ad~~vi~t~~~~-f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEWDE-FVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             TCSEEEECSCCGG-GTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             CCCEEEEcCCcHH-hhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            9999999988653 332 354444 467776688886 54 4565443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.94  E-value=0.042  Score=50.73  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=32.3

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~  182 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  202 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH  202 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            47899999999999999999999999 7999887654

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=93.90  E-value=0.041  Score=50.95  Aligned_cols=83  Identities=14%  Similarity=0.023  Sum_probs=48.3

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhC---CCEEEEe-CCCCC-CC---CCcc-ccCCH-HHhcccCCEEEEeccCChhhhccc
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAF---DCIIGYN-SRTEK-PN---LNYK-YYPNL-IDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~---G~~V~~~-~~~~~-~~---~~~~-~~~~l-~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      .+|||+| .|.+|+.+.+.|...   .+++... +++.. ..   .+.. ...++ .+.++.+|+|+.|+|.....+ ..
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~-~a   82 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAK-WA   82 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHH-HH
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHH-HH
Confidence            5899999 999999999998765   3465544 33221 11   0100 11111 124578999999998543211 11


Q ss_pred             cHHHHhccCCCcEEEEeCC
Q 042102          218 NRQVINALGPKGVLINIGR  236 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~r  236 (317)
                       +.   .++.|+.+|+.+.
T Consensus        83 -~~---~~~~G~~vId~s~   97 (336)
T 2r00_A           83 -PI---AAEAGVVVIDNTS   97 (336)
T ss_dssp             -HH---HHHTTCEEEECSS
T ss_pred             -HH---HHHcCCEEEEcCC
Confidence             11   2345778887753

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=93.89  E-value=0.12  Score=47.98  Aligned_cols=64  Identities=13%  Similarity=0.124  Sum_probs=47.4

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc-------ccCCHHHhcccCCEEEEeccC
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK-------YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ..+++|.|.|. |.||+.+++.|...|++|.+.+|......     ...       ...++.++++.+|+|+.+...
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            35789999998 99999999999999999998887654321     111       112356778899988877553

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.87  E-value=0.059  Score=51.85  Aligned_cols=104  Identities=16%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhh----------CCCEEE-EeCCCCCCC----CCccccCCHHHhcc--cCCEEEEeccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEA----------FDCIIG-YNSRTEKPN----LNYKYYPNLIDLAS--NCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~----------~G~~V~-~~~~~~~~~----~~~~~~~~l~el~~--~aDvV~~~lp~~  210 (317)
                      ..+|||+|+|.||+.+++.+..          .+.+|. +++++....    .....+.++++++.  +.|+|+.++|..
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            3589999999999999887652          456654 566654321    12334678899986  579999999863


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG  255 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~  255 (317)
                      ..-..+    ..+.++.|.-+|..--+... ..+.|.++.++.+..
T Consensus        90 ~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            221211    23455666666543332222 335777777776665

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.86  E-value=0.039  Score=48.47  Aligned_cols=61  Identities=13%  Similarity=0.214  Sum_probs=45.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--Ccc-------ccCCHHHhcccCCEEEEeccC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--NYK-------YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~-------~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ++|.|.|. |.||+.+++.|...|++|.+.+|+.....  +..       ...++.++++.+|+|+.+...
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            58999998 99999999999999999999988764321  111       112356778899998887654

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=93.86  E-value=0.098  Score=48.80  Aligned_cols=63  Identities=13%  Similarity=0.131  Sum_probs=44.5

Q ss_pred             CeEEEEe-cChhHHH-HH----HHHhhCC-CEE----------EEeCCCCCCC------CCc-cccCCHHHhccc--CCE
Q 042102          149 KSVGILG-MGRIGTA-IA----KRAEAFD-CII----------GYNSRTEKPN------LNY-KYYPNLIDLASN--CQI  202 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~-~a----~~l~~~G-~~V----------~~~~~~~~~~------~~~-~~~~~l~el~~~--aDv  202 (317)
                      .+||||| +|.||+. .+    +.++..+ ..+          .++++++...      .+. ..+.+++++++.  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            5899999 9999997 66    6665443 232          4788776432      222 246789999875  899


Q ss_pred             EEEeccCCh
Q 042102          203 LVVACSLTE  211 (317)
Q Consensus       203 V~~~lp~~~  211 (317)
                      |+++.|...
T Consensus        87 V~i~tp~~~   95 (383)
T 3oqb_A           87 FFDAATTQA   95 (383)
T ss_dssp             EEECSCSSS
T ss_pred             EEECCCchH
Confidence            999999644

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=93.86  E-value=0.11  Score=48.27  Aligned_cols=28  Identities=25%  Similarity=0.235  Sum_probs=22.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhC---CCEEEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF---DCIIGY  176 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~  176 (317)
                      .+|||+|+|.||+.+.+.|...   .++|.+
T Consensus         2 ikVgInG~G~IGr~llR~l~~~~~p~~eiva   32 (337)
T 1rm4_O            2 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVV   32 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSCSEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCCeEEEE
Confidence            3799999999999999998765   346643

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.85  E-value=0.067  Score=51.16  Aligned_cols=82  Identities=12%  Similarity=0.105  Sum_probs=59.6

Q ss_pred             cCCeEEEEecC----------hhHHHHHHHHhhCCCEEEEeCCCCCCCC-----C-----------ccccCCHHHhcccC
Q 042102          147 TGKSVGILGMG----------RIGTAIAKRAEAFDCIIGYNSRTEKPNL-----N-----------YKYYPNLIDLASNC  200 (317)
Q Consensus       147 ~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~-----------~~~~~~l~el~~~a  200 (317)
                      .|++|+|+|+.          .-...+++.|...|++|.+||+......     .           .....++.+.++.+
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS  391 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence            58999999997          5678999999999999999998522111     0           12345788899999


Q ss_pred             CEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102          201 QILVVACSLTEETQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~  234 (317)
                      |+|+++.... +.+. ++   .+.|+ +.+++|+
T Consensus       392 d~~vi~~~~~-~~~~-~~---~~~~~-~~~i~D~  419 (436)
T 1mv8_A          392 DVLVLGNGDE-LFVD-LV---NKTPS-GKKLVDL  419 (436)
T ss_dssp             SEEEECSCCG-GGHH-HH---HSCCT-TCEEEES
T ss_pred             cEEEEeCCcH-HHHh-hh---HHhcC-CCEEEEC
Confidence            9999998863 2222 12   34565 6788887

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.83  E-value=0.025  Score=51.78  Aligned_cols=84  Identities=14%  Similarity=0.222  Sum_probs=56.5

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----c-c-CCHHHhcc-----cCCEEEEeccC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----Y-Y-PNLIDLAS-----NCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~-~-~~l~el~~-----~aDvV~~~lp~  209 (317)
                      .|++|.|.|. |.||+.+++.++..|++|++.+++.+..     .+..    . . .++.+.+.     ..|+++.+...
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            5789999998 9999999999999999999888754321     1111    0 1 23333222     36777776542


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                        .+    -...++.++++..+|.++-
T Consensus       225 --~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 --EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             --HH----HHHHHTTEEEEEEEEECCC
T ss_pred             --HH----HHHHHHHHhcCCEEEEEec
Confidence              11    2456677888888888764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.80  E-value=0.026  Score=51.86  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=55.8

Q ss_pred             cCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc-----ccCCHHHh----c--ccCCEEEEeccC
Q 042102          147 TGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK-----YYPNLIDL----A--SNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-----~~~~l~el----~--~~aDvV~~~lp~  209 (317)
                      .|++|.|+|.| .||..+++.++.+|++|++.+++.+...     +..     ...++.+.    .  ...|+|+-+...
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            57899999998 9999999999999999998887654321     111     01222222    1  146777776542


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      . .+     ...++.++++..+|.++-
T Consensus       224 ~-~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          224 P-DG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             H-HH-----HHHHHTEEEEEEEEECCC
T ss_pred             h-hH-----HHHHHHhcCCCEEEEEee
Confidence            2 11     234567888888888864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.76  E-value=0.072  Score=48.54  Aligned_cols=65  Identities=12%  Similarity=0.140  Sum_probs=47.9

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CCcc-------ccCCHHHhcccC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LNYK-------YYPNLIDLASNC  200 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~~~-------~~~~l~el~~~a  200 (317)
                      .+.+++|.|.|. |.||+.+++.|...|.+|.+.+|.....                ....       ...++.++++.+
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            357899999995 9999999999999999999988865321                1111       112356778899


Q ss_pred             CEEEEeccC
Q 042102          201 QILVVACSL  209 (317)
Q Consensus       201 DvV~~~lp~  209 (317)
                      |+|+.+...
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            988877653

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=93.74  E-value=0.056  Score=52.02  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=62.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEE-EEeCCCCCCC------C-C----------------------ccccCCHHHhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCII-GYNSRTEKPN------L-N----------------------YKYYPNLIDLA  197 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~------~-~----------------------~~~~~~l~el~  197 (317)
                      .+|||||+|.||+.+++.+... +++| .++|++.+..      . +                      ...+.++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            4899999999999999888754 6775 4677765421      0 1                      12357899998


Q ss_pred             c--cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc-ccCHHHHHHHHHhCCce
Q 042102          198 S--NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL-LVDEHELVSALLQGRLG  255 (317)
Q Consensus       198 ~--~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~-~vd~~aL~~al~~g~i~  255 (317)
                      +  +.|+|+.++|....-.    +-.+..|+.|.-++...-+- ..+-+.|.++.++..+.
T Consensus       104 ~d~dIDaVviaTp~p~~H~----e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          104 SNPLIDVIIDATGIPEVGA----ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             TCTTCCEEEECSCCHHHHH----HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEcCCChHHHH----HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            7  4899999988542111    22334455565555321111 12334666666555554

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=93.73  E-value=0.088  Score=49.20  Aligned_cols=62  Identities=16%  Similarity=0.117  Sum_probs=39.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--C--CEEE-EeCCCCCCC--C--CccccCCHHHhcccC-------------------
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--D--CIIG-YNSRTEKPN--L--NYKYYPNLIDLASNC-------------------  200 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--G--~~V~-~~~~~~~~~--~--~~~~~~~l~el~~~a-------------------  200 (317)
                      .+|||||+|.||+.+++.+...  |  ++|. ++++.....  .  +...+.++++++...                   
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~   84 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhccC
Confidence            4799999999999999999875  3  5654 455432211  1  222224555555433                   


Q ss_pred             -CEEEEeccCC
Q 042102          201 -QILVVACSLT  210 (317)
Q Consensus       201 -DvV~~~lp~~  210 (317)
                       |+|+.|+|..
T Consensus        85 ~DvVV~~t~~~   95 (358)
T 1ebf_A           85 PVILVDNTSSA   95 (358)
T ss_dssp             CEEEEECSCCH
T ss_pred             CcEEEEcCCCh
Confidence             7888888854

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.72  E-value=0.061  Score=51.43  Aligned_cols=108  Identities=14%  Similarity=0.058  Sum_probs=66.6

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccc--cCCHHHhcccCCEEEEeccC---Chhh
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKY--YPNLIDLASNCQILVVACSL---TEET  213 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~--~~~l~el~~~aDvV~~~lp~---~~~t  213 (317)
                      ++.+++|.|||+|..|.+.|+.|+..|++|.++|......      .+...  -....+.+..+|.|++.-..   .|..
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSL   81 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSCTTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHH
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhhCCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHH
Confidence            3678999999999999999999999999999988654322      12111  11124555689988887332   2322


Q ss_pred             h-------ccccHH-HH-hccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          214 Q-------HIVNRQ-VI-NALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       214 ~-------~li~~~-~l-~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      .       .++.+- .+ ..++...+-|--+.|..--..-|...|++.
T Consensus        82 ~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           82 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             HHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            1       133321 12 234433444555667776666666666654

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=93.71  E-value=0.071  Score=47.77  Aligned_cols=62  Identities=13%  Similarity=0.100  Sum_probs=39.8

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhccc--CCEEEEeccC
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASN--CQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~--aDvV~~~lp~  209 (317)
                      +++|.|.|. |.||+.+++.|...|++|.+.+|+....    .+.....++.++++.  +|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            579999997 9999999999999999999988754321    111122345666664  8988877543

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=93.71  E-value=0.051  Score=50.46  Aligned_cols=29  Identities=28%  Similarity=0.204  Sum_probs=23.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhC---CCEEEEe
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF---DCIIGYN  177 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~  177 (317)
                      .+|||+|+|.||+.+.+.|...   +++|.+.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaI   34 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence            3899999999999999998765   3676543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=93.69  E-value=0.073  Score=48.35  Aligned_cols=67  Identities=18%  Similarity=0.026  Sum_probs=44.9

Q ss_pred             cccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC-------CCcc-------ccCCHHHhccc--CCEEEE
Q 042102          143 TTKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------LNYK-------YYPNLIDLASN--CQILVV  205 (317)
Q Consensus       143 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~~-------~~~~l~el~~~--aDvV~~  205 (317)
                      ...+.+++|.|.| .|.||+.+++.|...|++|.+.+|.....       ....       ...++.++++.  +|+|+.
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih   95 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVH   95 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEE
Confidence            3457889999998 69999999999999999999888764321       0111       01134566777  898887


Q ss_pred             eccC
Q 042102          206 ACSL  209 (317)
Q Consensus       206 ~lp~  209 (317)
                      +...
T Consensus        96 ~A~~   99 (333)
T 2q1w_A           96 TAAS   99 (333)
T ss_dssp             CCCC
T ss_pred             Ccee
Confidence            7553

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.68  E-value=0.081  Score=48.88  Aligned_cols=58  Identities=14%  Similarity=0.191  Sum_probs=41.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-Cc---c----ccCC---HHHhcccCCEEEEe
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-NY---K----YYPN---LIDLASNCQILVVA  206 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~---~----~~~~---l~el~~~aDvV~~~  206 (317)
                      |||+|+|-|..|..+++.++.+|++|++.|.+++... ..   .    ...+   +.++.+.+|.|+..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~   70 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPV   70 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEEC
Confidence            6999999999999999999999999998887654321 10   0    0112   33456788987654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=93.66  E-value=0.22  Score=43.95  Aligned_cols=50  Identities=24%  Similarity=0.375  Sum_probs=37.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhC-CCEEE-EeCCCCCCCCCccccCCHHHhcc-cCCEEEEecc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAF-DCIIG-YNSRTEKPNLNYKYYPNLIDLAS-NCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~l~el~~-~aDvV~~~lp  208 (317)
                      ++|+|+|+ |.||+.+++.+... |+++. ++++.          .++++++. .+|+|+-+.+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~----------~dl~~~~~~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG----------DPLSLLTDGNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT----------CCTHHHHHTTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC----------CCHHHHhccCCcEEEEccC
Confidence            37999996 99999999998765 88875 55543          34666665 7998885543

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=93.57  E-value=0.21  Score=45.71  Aligned_cols=96  Identities=16%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHhh---CCCEEEEeCCCCCCC--------CCc--ccc----CCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILG-MGRIGTAIAKRAEA---FDCIIGYNSRTEKPN--------LNY--KYY----PNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~---~G~~V~~~~~~~~~~--------~~~--~~~----~~l~el~~~aDvV~~~lp~~  210 (317)
                      ++|+|+| .|.+|+.++..|..   +.-++..+|......        ...  ...    .+..+.++.||+|+++.+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            4899999 89999999999864   445788888765210        011  111    24678899999999986432


Q ss_pred             hh---hh-ccc--cH-------HHHhccCCCcEEEEeCCCcccCHHHHH
Q 042102          211 EE---TQ-HIV--NR-------QVINALGPKGVLINIGRGLLVDEHELV  246 (317)
Q Consensus       211 ~~---t~-~li--~~-------~~l~~mk~gavlVN~~rg~~vd~~aL~  246 (317)
                      ..   ++ .++  |.       +.+....|++++++++  .++|.-..+
T Consensus        81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            11   11 112  11       1233346889999995  667665544

>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}

Probab=93.56  E-value=0.2  Score=44.96  Aligned_cols=88  Identities=13%  Similarity=0.201  Sum_probs=57.7

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      ....|++|++||+-    ...++++.-++++.+++++++...  .....-++++++||+|++.-.  .=..+-+ ...|+
T Consensus       137 ~~~~g~kV~vIG~f----P~i~~~~~~~~~l~V~E~~p~~g~--~p~~~~~~~lp~~D~viiTgs--tlvN~Tl-~~lL~  207 (270)
T 3l5o_A          137 NEVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGD--YPLPASEFILPECDYVYITCA--SVVDKTL-PRLLE  207 (270)
T ss_dssp             TTTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTC--EEGGGHHHHGGGCSEEEEETH--HHHHTCH-HHHHH
T ss_pred             cccCCCEEEEECCc----hhHHHHHhcCCCEEEEECCCCCCC--CChhHHHHhhccCCEEEEEee--hhhcCCH-HHHHh
Confidence            35679999999985    455666777899999998775432  112235678999999988722  2111111 45677


Q ss_pred             ccCCCcEEEEeCCCccc
Q 042102          224 ALGPKGVLINIGRGLLV  240 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~v  240 (317)
                      ..|+...+|=+|-....
T Consensus       208 ~~~~a~~vvl~GPStp~  224 (270)
T 3l5o_A          208 LSRNARRITLVGPGTPL  224 (270)
T ss_dssp             HTTTSSEEEEESTTCCC
T ss_pred             hCCCCCEEEEECCCchh
Confidence            77887777766644433

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.55  E-value=0.11  Score=50.69  Aligned_cols=62  Identities=19%  Similarity=0.109  Sum_probs=47.3

Q ss_pred             CCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCCcc--ccCCHHHhcccCCEEEEeccC
Q 042102          148 GKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK--YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~--~~~~l~el~~~aDvV~~~lp~  209 (317)
                      +++|.|.| .|.||+.+++.|...|.+|.+.+|+........  ....+.+++..+|+|+.+...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCC
Confidence            68999999 699999999999999999999988765432111  123456778899998876553

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.53  E-value=0.027  Score=52.44  Aligned_cols=85  Identities=19%  Similarity=0.173  Sum_probs=56.3

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc-----cCCHHHhcc-----cCCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY-----YPNLIDLAS-----NCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~el~~-----~aDvV~~~lp~~  210 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .+...     ..++.+.+.     ..|+|+-+....
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            57899999999999999999999999 688887654321     11110     122222221     368777776532


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      + +    -...++.++++..+|.++-
T Consensus       270 ~-~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          270 E-I----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             H-H----HHHHHHTEEEEEEEEECCC
T ss_pred             H-H----HHHHHHHHhcCCEEEEeCC
Confidence            1 1    1456677888888888764

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=93.48  E-value=0.056  Score=45.22  Aligned_cols=58  Identities=16%  Similarity=0.261  Sum_probs=40.3

Q ss_pred             eEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-CCccccCCHHHhccc---CCEEEEecc
Q 042102          150 SVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-LNYKYYPNLIDLASN---CQILVVACS  208 (317)
Q Consensus       150 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~~~~~l~el~~~---aDvV~~~lp  208 (317)
                      ++.|.|. |.||+.+++.|. .|++|...+|+.... .+.....++++++++   .|+|+.+..
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCC
Confidence            7888885 799999999999 999999888865311 111112234555554   798887654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.39  E-value=0.023  Score=52.65  Aligned_cols=84  Identities=23%  Similarity=0.223  Sum_probs=55.6

Q ss_pred             cCCeEEEE-ecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc-----ccCCHHHhc-----ccCCEEEEeccCC
Q 042102          147 TGKSVGIL-GMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK-----YYPNLIDLA-----SNCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIi-G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~-----~~~~l~el~-----~~aDvV~~~lp~~  210 (317)
                      .|++|.|+ |.|.||..+++.++..|++|++.+++....     .+..     ...++.+.+     ...|+++-+....
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~  246 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA  246 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence            57899999 689999999999999999999988765321     1111     011222222     2467777765521


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                            .-...++.++++..++.++.
T Consensus       247 ------~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          247 ------YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             ------GHHHHHHTEEEEEEEEECCC
T ss_pred             ------HHHHHHHHhccCCEEEEEEe
Confidence                  12456677788888887763

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.38  E-value=0.056  Score=47.76  Aligned_cols=61  Identities=10%  Similarity=-0.001  Sum_probs=45.1

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----ccCCHHHhcccCCEEEEeccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      .++|.|.|.|.||+.+++.|...|++|.+.+|+....     .+..    ...+++  +..+|+|+.+....
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            3689999999999999999999999999998876432     1111    112233  78899988877643

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=93.38  E-value=0.087  Score=45.84  Aligned_cols=92  Identities=18%  Similarity=0.148  Sum_probs=56.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCC-c----cccCCHHHhcccC----CEEEEeccCCh-h--hhc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLN-Y----KYYPNLIDLASNC----QILVVACSLTE-E--TQH  215 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-~----~~~~~l~el~~~a----DvV~~~lp~~~-~--t~~  215 (317)
                      |++.|.|. |.||+.+++.|...|++|++.+|+...... .    ....++++++++.    |+|+.+.-... .  -+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~   81 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence            46777775 689999999999999999988886543211 1    1112344555544    99888764432 0  011


Q ss_pred             c----------ccHHHHhccCC--CcEEEEeCCCccc
Q 042102          216 I----------VNRQVINALGP--KGVLINIGRGLLV  240 (317)
Q Consensus       216 l----------i~~~~l~~mk~--gavlVN~~rg~~v  240 (317)
                      .          +.+..++.|++  +..+||++.....
T Consensus        82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence            1          12344555543  3789999876544

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=93.38  E-value=0.068  Score=49.21  Aligned_cols=65  Identities=18%  Similarity=0.151  Sum_probs=46.6

Q ss_pred             cccCCeEEEEe-cChhHHHHHHHHhhC-CCEEEEeCCCCCCCC------Ccc--------ccCCHHHhcccCCEEEEecc
Q 042102          145 KFTGKSVGILG-MGRIGTAIAKRAEAF-DCIIGYNSRTEKPNL------NYK--------YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~------~~~--------~~~~l~el~~~aDvV~~~lp  208 (317)
                      .+.+++|.|.| .|.||+.+++.|... |++|.+.+|+.....      ...        ....+.++++.+|+|+-+..
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            46789999999 699999999999887 899999988754321      111        11235567889998887654


Q ss_pred             C
Q 042102          209 L  209 (317)
Q Consensus       209 ~  209 (317)
                      .
T Consensus       101 ~  101 (372)
T 3slg_A          101 I  101 (372)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.32  E-value=0.092  Score=49.05  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=32.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~  182 (317)
                      .|.+|.|+|.|.+|...++.++.+| .+|++.+++++
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  231 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN  231 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHH
Confidence            4789999999999999999999999 59999887653

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.32  E-value=0.19  Score=46.77  Aligned_cols=88  Identities=17%  Similarity=0.143  Sum_probs=59.2

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccc-----cCCHHHhc---ccCCEEEEeccCChhh
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKY-----YPNLIDLA---SNCQILVVACSLTEET  213 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~-----~~~l~el~---~~aDvV~~~lp~~~~t  213 (317)
                      .|++|.|+| .|.+|..+++.++.+|++|++.++..+..    .+...     ..++.+.+   ...|+|+-+......+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~  262 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTET  262 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhh
Confidence            588999999 79999999999999999998776322111    12111     12333322   3589998887644221


Q ss_pred             hccccHHHHhccCCCcEEEEeCCCc
Q 042102          214 QHIVNRQVINALGPKGVLINIGRGL  238 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~rg~  238 (317)
                          -...++.++++..+|.++...
T Consensus       263 ----~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          263 ----WAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             ----HGGGGBCSSSCCEEEESCCSH
T ss_pred             ----hHHHHHhhcCCcEEEEeCCCc
Confidence                134567789999999998643

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=93.31  E-value=0.072  Score=49.43  Aligned_cols=32  Identities=28%  Similarity=0.367  Sum_probs=27.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEE-eCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGY-NSRT  180 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~  180 (317)
                      .+|||.|||+||+.+++.+..+|++|.+ .|+.
T Consensus         8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~   40 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPF   40 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4899999999999999999999998776 5653

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.30  E-value=0.018  Score=52.84  Aligned_cols=85  Identities=16%  Similarity=0.190  Sum_probs=56.1

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccc-----cCCHHHhc-----ccCCEEEEeccC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKY-----YPNLIDLA-----SNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~-----~~~l~el~-----~~aDvV~~~lp~  209 (317)
                      .|++|.|+|. |.||..+++.++..|++|++.+++....      .+...     ..++.+.+     ...|+++.+...
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            5789999999 9999999999999999999888764321      11110     11222222     136777766542


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                        .    .-...++.++++..+|.++..
T Consensus       229 --~----~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          229 --E----ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             --H----HHHHHHTTEEEEEEEEECCCG
T ss_pred             --c----hHHHHHHHHhhCCEEEEEeec
Confidence              1    124566778888888887643

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.30  E-value=0.11  Score=47.06  Aligned_cols=61  Identities=13%  Similarity=0.080  Sum_probs=43.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc-------ccCCHHHhcccCCEEEEeccC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK-------YYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDvV~~~lp~  209 (317)
                      ++|.|.|. |.||+.+++.|...|++|.+.+|+.....     +..       ...++.++++.+|+|+.+...
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            58999995 99999999999999999999888654321     111       112356778899988877653

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=93.29  E-value=0.11  Score=47.49  Aligned_cols=65  Identities=15%  Similarity=0.127  Sum_probs=48.2

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CCcc-------ccCCHHHhcccC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LNYK-------YYPNLIDLASNC  200 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~~~-------~~~~l~el~~~a  200 (317)
                      .+.+++|.|.|. |.||+.+++.|...|++|.+.+|.....                ....       ...++.++++.+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            467899999998 9999999999999999999888754310                1111       112355778899


Q ss_pred             CEEEEeccC
Q 042102          201 QILVVACSL  209 (317)
Q Consensus       201 DvV~~~lp~  209 (317)
                      |+|+.+...
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            988877654

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=93.21  E-value=0.072  Score=48.91  Aligned_cols=62  Identities=16%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCCC-CC---------CC--ccccCCHHHhccc--CCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTEK-PN---------LN--YKYYPNLIDLASN--CQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~-~~---------~~--~~~~~~l~el~~~--aDvV~~~lp~~~  211 (317)
                      .+|||||+|.+|+..++.+ .-+++|. ++|+++. ..         .+  ...+.+++++++.  .|+|++++|...
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~   79 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL   79 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence            4899999999999777766 5567765 6777652 11         02  2356789999875  899999988543

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=93.17  E-value=0.065  Score=50.46  Aligned_cols=29  Identities=28%  Similarity=0.204  Sum_probs=23.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhC---CCEEEEe
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF---DCIIGYN  177 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~  177 (317)
                      .+|||+|+|.||+.+.+.|...   +++|.+.
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaI   34 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEE
Confidence            3899999999999999998764   3676544

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=93.15  E-value=0.2  Score=43.57  Aligned_cols=40  Identities=30%  Similarity=0.311  Sum_probs=34.2

Q ss_pred             ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      ..+.||++.|.|. |.||+.+++.|...|++|++.+|+...
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   51 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   51 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            3578999999985 799999999999999999988876543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.10  E-value=0.058  Score=48.91  Aligned_cols=82  Identities=13%  Similarity=0.224  Sum_probs=51.6

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-cCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-YPNLIDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-~~~l~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+ +.++.     .++.. ..+.+++-...|+++-+.... .    . ..
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~~-~----~-~~  214 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQ-N----A-AA  214 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCch-h----H-HH
Confidence            57899999999999999999999999999888 54332     11110 112222234567766665432 1    1 33


Q ss_pred             HHhccCCCcEEEEeC
Q 042102          221 VINALGPKGVLINIG  235 (317)
Q Consensus       221 ~l~~mk~gavlVN~~  235 (317)
                      .++.++++..+|.++
T Consensus       215 ~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          215 LVPSLKANGHIICIQ  229 (315)
T ss_dssp             TGGGEEEEEEEEEEC
T ss_pred             HHHHhcCCCEEEEEe
Confidence            566777888777774

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=93.09  E-value=0.11  Score=46.49  Aligned_cols=61  Identities=18%  Similarity=0.138  Sum_probs=45.8

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcc--cCCEEEEeccCC
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLAS--NCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~--~aDvV~~~lp~~  210 (317)
                      +++|.|.|. |.||+.+++.|...|++|.+.+++...  +.....++.++++  .+|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~--D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL--NLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC--CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC--CccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            578999995 999999999999999999888765322  1222234667777  899988776543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.05  E-value=0.064  Score=49.04  Aligned_cols=36  Identities=14%  Similarity=0.151  Sum_probs=32.3

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|++|.|+| .|.||..+++.++.+|++|++.+++.+
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  184 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE  184 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999 899999999999999999998887543

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.05  E-value=0.051  Score=49.46  Aligned_cols=84  Identities=14%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCcc-----ccCC-HHHhcccCCEEEEeccCChhhhc
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYK-----YYPN-LIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~-----~~~~-l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .|.+|.|+| .|.+|...++.++.+|++|++..+..+..    .++.     ...+ +.+.+...|+|+-++...    .
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~----~  227 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGD----V  227 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHH----H
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcH----H
Confidence            578999997 99999999999999999988776432211    1111     1123 666667889988886621    1


Q ss_pred             cccHHHHhccCCCcEEEEeCC
Q 042102          216 IVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~r  236 (317)
                       + ...++.++++..+|.++.
T Consensus       228 -~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          228 -G-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             -H-HHHGGGEEEEEEEEECCS
T ss_pred             -H-HHHHHhccCCCEEEEeCC
Confidence             2 567888999999999864

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=93.04  E-value=0.057  Score=49.72  Aligned_cols=92  Identities=18%  Similarity=0.313  Sum_probs=58.6

Q ss_pred             CCeEEEEe-cChhHHHHHHHHhhCC--CEEEEeCCCCCCC-------CC----ccc---cCCHHHhcccCCEEEEeccCC
Q 042102          148 GKSVGILG-MGRIGTAIAKRAEAFD--CIIGYNSRTEKPN-------LN----YKY---YPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG-~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~-------~~----~~~---~~~l~el~~~aDvV~~~lp~~  210 (317)
                      .++|+|+| .|.+|+.++..|...|  .+|..+|......       ..    ...   ..++.+.++.||+|+++.+..
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~   87 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP   87 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence            36899999 8999999999998777  6788888654310       00    111   124678899999999997643


Q ss_pred             hhhhcc-------cc----HH---HHhccCCCcEEEEeCCCcccCH
Q 042102          211 EETQHI-------VN----RQ---VINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       211 ~~t~~l-------i~----~~---~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      .. .+.       .|    ++   .+....+.+++++.+  .++|.
T Consensus        88 ~~-~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           88 RK-PGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             CC-SSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             CC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            21 110       11    11   222335788888864  55665

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.04  E-value=0.035  Score=50.64  Aligned_cols=84  Identities=13%  Similarity=0.287  Sum_probs=55.5

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc-----ccCCHHH----hc--ccCCEEEEeccC
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK-----YYPNLID----LA--SNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~-----~~~~l~e----l~--~~aDvV~~~lp~  209 (317)
                      .|++|.|+| .|.+|..+++.++..|++|++.++++++.     .+..     ...++.+    +.  ...|+|+-+...
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            578999999 89999999999999999999888764321     1111     0112222    11  246777776552


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                        +    .-...++.++++..+|.++.
T Consensus       220 --~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          220 --D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             --G----GHHHHHTTEEEEEEEEECCC
T ss_pred             --H----HHHHHHHHhcCCCEEEEEec
Confidence              1    12456677888888888764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.03  E-value=0.04  Score=50.18  Aligned_cols=35  Identities=14%  Similarity=0.105  Sum_probs=31.7

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|++|.|.| .|.||..+++.++..|++|++.+++.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~  175 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA  175 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999 79999999999999999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	4e-46
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	2e-36
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	2e-36
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	2e-34
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	2e-33
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	5e-26
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	9e-26
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	2e-23
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	3e-19
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	3e-15
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	4e-15
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	6e-15
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	2e-14
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	2e-13
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	4e-12
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	1e-08
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	1e-06

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  152 bits (385), Expect = 4e-46
 Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 7/191 (3%)

Query: 104 LTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFK--MTTKFTGKSVGILGMGRIGT 161
           +T   A++A+ L+L   RR  E ++ +R+  W   E    +  K   K++GI G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 162 AIAKRAEAFDCIIGYNSRTEKPNLNYK-----YYPNLIDLASNCQILVVACSLTEETQHI 216
           A+AKRA+ FD  I Y       + +       ++ +L  L S  Q   +    T ET++ 
Sbjct: 61  ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 120

Query: 217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLE 276
            N+  I +L    +++N  RG LVD   +V+AL  GRL  AG DVF  EP++ E    L 
Sbjct: 121 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLP 180

Query: 277 NVVLLPHVASA 287
           N  L PH+ SA
Sbjct: 181 NTFLFPHIGSA 191

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  127 bits (319), Expect = 2e-36
 Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 7/187 (3%)

Query: 105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA 164
           T  VA+L IG +L +LR + E++     G   K           K +GI+G G IGT + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLG 60

Query: 165 KRAEAFDCIIGYNSRTEKPNL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN 223
             AE+    + +     K  L N     +L DL +   ++ +       T++++  + I+
Sbjct: 61  ILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEIS 120

Query: 224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE-----LIGLENV 278
            + P  +LIN  RG +VD   L  AL    L GA +DVF  EP    +     L   +NV
Sbjct: 121 LMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 180

Query: 279 VLLPHVA 285
           +L PH+ 
Sbjct: 181 LLTPHIG 187

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  127 bits (318), Expect = 2e-36
 Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 4/183 (2%)

Query: 105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA 164
               A+ A+ L+LA  R+I  +D  +R   WK+  F  T  F  K+VG++G+GRIG  +A
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVA 60

Query: 165 KRAEAFDCIIGYNSRTEKPNLNYK---YYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221
           +R  AF   +        P    +      +L DL +    + V    T ET  +++++ 
Sbjct: 61  QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120

Query: 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLL 281
           +    P  +++N  RG LVDE  L  A+  G +  AGLDVF  EP     L  L  VV+ 
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVT 180

Query: 282 PHV 284
           PH+
Sbjct: 181 PHL 183

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  122 bits (306), Expect = 2e-34
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 12/192 (6%)

Query: 106 DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFK------MTTKFTGKSVGILGMGRI 159
           ++ AD  +  IL + RR     + +R G   +   +         +  G+++GI+G+GR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 160 GTAIAKRAEAFDCIIGYNSRT----EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQH 215
           G A+A RA+AF   + +         +  L  +    L DL  +   + + C L E   H
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120

Query: 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LI 273
           ++N   +  +     L+N  RG LVDE  L  AL +GR+ GA LDV E EP    +  L 
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180

Query: 274 GLENVVLLPHVA 285
              N++  PH A
Sbjct: 181 DAPNLICTPHAA 192

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  119 bits (299), Expect = 2e-33
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKR 166
           VA+  + +IL+++R    S  + R G W   +            VG +  GRIG A+ +R
Sbjct: 3   VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 62

Query: 167 AEAFDCIIGYNSRT-----EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221
              FD  + Y  R       +  LN  ++    D+   C ++ + C L  ET+H++N + 
Sbjct: 63  LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 122

Query: 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVL 280
           +        ++N  RG L D   +  AL  GRL G   DV+  +P   +     +    +
Sbjct: 123 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM 182

Query: 281 LPHVA 285
            PH++
Sbjct: 183 TPHIS 187

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 99.8 bits (247), Expect = 5e-26
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 5/182 (2%)

Query: 106 DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAK 165
           D VA+ A+ L+LA  +RI +    ++ G++ +          G+ V +LG+G IGT + K
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGLGEIGTRVGK 59

Query: 166 RAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225
              A    +   SRT K    +++  +L +     +  V A  L + T+ +V  Q +  +
Sbjct: 60  ILAALGAQVRGFSRTPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALM 118

Query: 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE--ELIGLENVVLLPH 283
               V +N+GR  ++D   ++  L +        DV+    D  +  E   L NVV  P 
Sbjct: 119 AEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPW 178

Query: 284 VA 285
           VA
Sbjct: 179 VA 180

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score =   99 bits (247), Expect = 9e-26
 Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 15/196 (7%)

Query: 105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA 164
              +A+ A+   L +LR + +    +++G+++K    +  +   ++VG++G G IG    
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61

Query: 165 KRAEAFDCIIGYNSRTEKPNLNYKYYP-NLIDLASNCQILVVACSLTEETQHIVNRQVIN 223
           K  + F   +           +  +   +L DL     ++ +     E+  HI+N    N
Sbjct: 62  KLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFN 121

Query: 224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP--------------DVP 269
            + P  ++IN  R  L+D   ++S L  G+L G G+D +E+E                + 
Sbjct: 122 LMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLW 181

Query: 270 EELIGLENVVLLPHVA 285
           +EL+G+ NVVL PH+A
Sbjct: 182 DELLGMPNVVLSPHIA 197

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 92.9 bits (229), Expect = 2e-23
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (8%)

Query: 108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA 167
           +A+ A      +LR+    D  V   + +     +  +   + VG++G G IG    +  
Sbjct: 4   IAEHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIM 62

Query: 168 EAFDCIIGYNSRTEKPNLNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225
           E F   +        P L  K  Y  +L DL     ++ +         H++N + I  +
Sbjct: 63  EGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 122

Query: 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE-------------- 271
               V++N+ RG LVD   ++  L  G++ G  +DV+E E  +  E              
Sbjct: 123 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 182

Query: 272 LIGLENVVLLPHVA 285
           LI   NV++ P  A
Sbjct: 183 LIARPNVLVTPKTA 196

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 80.0 bits (197), Expect = 3e-19
 Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 43/151 (28%)

Query: 20  LEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCS 79
            E+E+ K FK+ +     + E  + +                 AE +  +P+L+ +   +
Sbjct: 13  AEEELRKYFKIVRGGDLGNVEAALVSR--------------ITAEELAKMPRLKFIQVVT 58

Query: 80  VGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE 139
            GLD +           VA            +   +++  +R +                
Sbjct: 59  AGLDHLPWESIPPHVT-VAGNAGSNGYGNERVWRQMVMEAVRNL---------------- 101

Query: 140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAF 170
                            G     IAKR +  
Sbjct: 102 ------------ITYATGGRPRNIAKREDYI 120

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 3e-15
 Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 1/117 (0%)

Query: 20  LEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCS 79
           +E  I K          +  ++      +     +         E +E    L I+    
Sbjct: 14  VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIG 73

Query: 80  VGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK 136
            G D ID+    + GI V N P          +I +     R I  +         K
Sbjct: 74  SGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAITGRIPDSLK 129

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 68.6 bits (167), Expect = 4e-15
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 2/127 (1%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
           VL+   ++      +    +V +     D+++ +    +   A++  +A   DAE++ + 
Sbjct: 5   VLIADKLAPSTVAALGDQVEV-RWVDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAA 62

Query: 70  PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
           PKL+IVA   VGLD +D+     +G+ V N P   +   A    G  +A   R+  +  +
Sbjct: 63  PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEF 122

Query: 130 VRSGEWK 136
           V      
Sbjct: 123 VPDAVNV 129

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 68.1 bits (166), Expect = 6e-15
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 2/116 (1%)

Query: 10  VLMVCPVSNYLEQEIEKSFKVFKLWHFE--DKEQFINTHKDSIQAVVGSAAAGADAELIE 67
           +L+  P+         +S+ V           ++ I T K     ++          +  
Sbjct: 4   ILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDR 63

Query: 68  SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
               ++ ++T S+G D IDL  CK +GI+V N P   T    D+A      +    
Sbjct: 64  IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 62  DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLA--------I 113
             E I     L++  T  +G D +DL    ++ + VA      +  +   A        I
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREI 163

Query: 114 GLILAVLRRICESDRYVRSGEW 135
                  R I +    V+ G  
Sbjct: 164 LECFFEGRPIRDEYLIVQGGAL 185

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 63.9 bits (155), Expect = 2e-13
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 19  YLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIES--LPKLEIVA 76
           Y +Q  + +    +       E  +   K     +         A + E      ++ + 
Sbjct: 15  YFKQWAKDTGNTLEYHTEFLDENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLT 73

Query: 77  TCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSG 133
             +VG D ID+   K+ GIR++N P      V ++    +  ++  + + +      
Sbjct: 74  IRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETSTEVT 130

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 60.7 bits (147), Expect = 4e-12
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 19  YLEQEIEKSFKVFKLWHFED--KEQFINTHKDSIQAVVGSAAAGADAELIESLP--KLEI 74
           +L++  +    V ++ + +     + +   K     VV        AE +++L    +  
Sbjct: 15  FLKEWEDAHKDV-EVEYTDKLLTPETVALAKG-ADGVVVYQQLDYIAETLQALADNGITK 72

Query: 75  VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGE 134
           ++  +VG+D ID+A+ KE G ++ N P          A+  ++             +  E
Sbjct: 73  MSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNLELVEGKEAE 129

Query: 135 WK 136
             
Sbjct: 130 TP 131

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 1/96 (1%)

Query: 38  DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
           D EQ   + +D    +   +      ++I +  KL  +   ++G +++DL    ++GI V
Sbjct: 37  DDEQLKESIRD-AHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPV 95

Query: 98  ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSG 133
            N P   T +  +     +   L +  ++   + + 
Sbjct: 96  FNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 1/119 (0%)

Query: 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVV 205
             GK   + G G +G   A+    F   +          L        +           
Sbjct: 22  IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 81

Query: 206 ACSLTEETQHIVNRQVINALGPKGVLINIG-RGLLVDEHELVSALLQGRLGGAGLDVFE 263
               T     I+  +    +    ++ NIG   + +D   L    ++       +D + 
Sbjct: 82  IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.94
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.91
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.9
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.9
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.87
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.85
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.84
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.77
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.6
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.48
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.39
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.38
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.37
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.25
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.21
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.07
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.93
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.87
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.86
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.82
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.71
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.63
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.55
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.55
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.45
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.39
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.35
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.25
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.23
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.21
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.15
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.11
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.03
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.03
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.01
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.99
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.99
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.98
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.97
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.89
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.88
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.87
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.7
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.66
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.52
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.5
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.5
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.44
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.39
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.34
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.25
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.25
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.25
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.17
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.16
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.16
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.13
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.11
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.1
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.08
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.08
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.0
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.99
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.98
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.97
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.91
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.89
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.87
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.86
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.86
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.81
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.81
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.78
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.77
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.74
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.7
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.69
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.67
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.66
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.64
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.61
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.55
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.53
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.51
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.51
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.48
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.47
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.46
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.39
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.38
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.35
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.3
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.29
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.2
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.13
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.12
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.08
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.08
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.06
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.99
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.89
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.81
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.73
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.73
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.7
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	95.64
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.61
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.59
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.58
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.55
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.49
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.46
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.44
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	95.43
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.42
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.4
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.4
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.34
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	95.26
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.26
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.25
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.24
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.17
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.11
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.11
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.1
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.06
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.03
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.96
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.95
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.93
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.92
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	94.89
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.86
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.78
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	94.78
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.76
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.68
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.68
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.65
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.62
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.6
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.58
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.57
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.54
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.53
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.5
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.49
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.48
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.47
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	94.46
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.44
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.41
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.34
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.22
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	94.07
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.03
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.91
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.89
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.86
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.75
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.67
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.58
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.43
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.34
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.2
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.11
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.1
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.04
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.02
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.0
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.99
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.91
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.7
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.66
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.66
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.61
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.5
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.45
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.37
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	92.33
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.29
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.28
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.23
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.19
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.15
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.06
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.06
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.03
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.02
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.99
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	91.97
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.96
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.87
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.85
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.78
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	91.69
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	91.68
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.62
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	91.55
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.49
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.47
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.4
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.32
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.15
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.12
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.05
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.02
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.78
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.74
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	90.73
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.7
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	90.61
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.55
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	90.51
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.44
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.39
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.37
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	90.33
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.29
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	90.2
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.05
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	90.0
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	89.83
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.79
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.71
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	89.71
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.67
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.63
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.6
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.4
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.32
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.22
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	89.01
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	88.97
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.94
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	88.81
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.8
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	88.69
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.66
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.38
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	88.34
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	88.32
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.23
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.16
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.13
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.05
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.85
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	87.82
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	87.67
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	87.66
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	87.65
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	87.56
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.51
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.38
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.27
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	87.21
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	87.06
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	86.76
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.68
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.53
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	86.49
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.42
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	86.32
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	86.23
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	86.05
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	85.9
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.82
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	85.81
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.74
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.63
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.51
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	85.37
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.31
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.98
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	84.9
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	84.61
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.32
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.28
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.13
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	84.04
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	84.0
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	83.92
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.84
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	83.82
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.8
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	83.79
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	83.64
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.6
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.46
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.34
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	83.19
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.16
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	82.97
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	82.96
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	82.89
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	82.45
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	82.22
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	82.17
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.13
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	81.34
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	81.09
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	81.03
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	81.0
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.85
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	80.7
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	80.41
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	80.24

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.1e-52  Score=362.18  Aligned_cols=181  Identities=33%  Similarity=0.509  Sum_probs=167.8

Q ss_pred             CcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          104 LTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       104 ~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      |+.+||||++++||++.|+++++++.++++.|.+..+ .+.++.|+++||+|+|.||+.+|+++++|||+|++||++..+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~-~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF-SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGC-CBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-ccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCCh
Confidence            6789999999999999999999999999999975433 478899999999999999999999999999999999987654


Q ss_pred             CCC---ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102          184 NLN---YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD  260 (317)
Q Consensus       184 ~~~---~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD  260 (317)
                      ...   .....+++|++++||+|++|||+|++|+++||++.|+.||+|++|||+|||++||++||+++|++|+|.||+||
T Consensus        80 ~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lD  159 (184)
T d1ygya1          80 ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLD  159 (184)
T ss_dssp             HHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEES
T ss_pred             hHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEe
Confidence            321   12356899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccCCCCceEEcccCC
Q 042102          261 VFEHEPDVPEELIGLENVVLLPHVA  285 (317)
Q Consensus       261 V~~~EP~~~~~L~~~pnvi~tPH~a  285 (317)
                      ||++||.+++|||++|||++|||+|
T Consensus       160 V~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         160 VFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             SCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             CCCCCCCCCchHhcCCCEEECCCCC
Confidence            9999999888999999999999997

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=1.9e-51  Score=356.05  Aligned_cols=183  Identities=35%  Similarity=0.521  Sum_probs=167.6

Q ss_pred             cHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccC--cccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKG--EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       105 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +.+|||+++++||+++|+++++++.+++|.|...  ....+++++|+|+||||+|+||+.+|+++++|||+|.+|++...
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            4689999999999999999999999999999632  12357899999999999999999999999999999999998665


Q ss_pred             CCC-----CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102          183 PNL-----NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGA  257 (317)
Q Consensus       183 ~~~-----~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga  257 (317)
                      ...     ......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||+++|+++|++|+|.||
T Consensus        82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a  161 (191)
T d1gdha1          82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA  161 (191)
T ss_dssp             CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred             ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence            321     233467899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCcccCCCCceEEcccCCCc
Q 042102          258 GLDVFEHEPDVPEELIGLENVVLLPHVASA  287 (317)
Q Consensus       258 ~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~  287 (317)
                      ++|||++||.++++||++|||++|||+|++
T Consensus       162 ~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         162 GFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             EESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             EEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999877899999999999999974

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=8.1e-51  Score=352.54  Aligned_cols=181  Identities=30%  Similarity=0.472  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc------ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCC
Q 042102          106 DDVADLAIGLILAVLRRICESDRYVRSGEWKKGE------FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSR  179 (317)
Q Consensus       106 ~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~------~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~  179 (317)
                      ++|||++++++|+++|++..+++.+++|.|.+..      ...+.+|+|+||||||+|+||+.+|+++++|||+|.+||+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            5899999999999999999999999999997532      1347899999999999999999999999999999999998


Q ss_pred             CCCCCC----CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          180 TEKPNL----NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       180 ~~~~~~----~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ......    +.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            765431    3345678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCC--cccCCCCceEEcccCCC
Q 042102          256 GAGLDVFEHEPDVP--EELIGLENVVLLPHVAS  286 (317)
Q Consensus       256 ga~lDV~~~EP~~~--~~L~~~pnvi~tPH~a~  286 (317)
                      ||++|||++||.+.  +|||++|||++|||+|+
T Consensus       161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999763  48999999999999985

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=3.3e-51  Score=356.95  Aligned_cols=183  Identities=27%  Similarity=0.447  Sum_probs=166.7

Q ss_pred             cHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       105 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      .++||||+++++|++.|++.++++.+++|.|.+.....+++|.|+||||||+|+||+.+|+++++|||+|++||++....
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   81 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG   81 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence            47999999999999999999999999999998543346889999999999999999999999999999999999876543


Q ss_pred             CC-ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 042102          185 LN-YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFE  263 (317)
Q Consensus       185 ~~-~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~  263 (317)
                      .. .....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||+++|+++|++|+|.||+||||+
T Consensus        82 ~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~  161 (199)
T d1dxya1          82 DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE  161 (199)
T ss_dssp             CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccC
Confidence            22 22456899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------C----cccCCCCceEEcccCCCc
Q 042102          264 HEPDV----------P----EELIGLENVVLLPHVASA  287 (317)
Q Consensus       264 ~EP~~----------~----~~L~~~pnvi~tPH~a~~  287 (317)
                      +||.+          .    ++||.+|||++|||+|||
T Consensus       162 ~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         162 YETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             THHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             CCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            99952          1    368899999999999996

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=4.1e-50  Score=347.23  Aligned_cols=181  Identities=27%  Similarity=0.501  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc-ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          106 DDVADLAIGLILAVLRRICESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       106 ~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      .+||||+++++|+++|++.+++..+++|.|.+.. ...++++.|+++||+|+|+||+.+|+++++|||+|.+|++...+.
T Consensus         1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d2naca1           1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE   80 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccc
Confidence            3799999999999999999999999999997322 224678999999999999999999999999999999999875432


Q ss_pred             -----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEe
Q 042102          185 -----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGL  259 (317)
Q Consensus       185 -----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~l  259 (317)
                           .+.....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||+|
T Consensus        81 ~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~l  160 (188)
T d2naca1          81 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAG  160 (188)
T ss_dssp             HHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEE
T ss_pred             cccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEE
Confidence                 223456789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCc-ccCCCCceEEcccCCC
Q 042102          260 DVFEHEPDVPE-ELIGLENVVLLPHVAS  286 (317)
Q Consensus       260 DV~~~EP~~~~-~L~~~pnvi~tPH~a~  286 (317)
                      |||++||.+.+ |||.+||+++|||+||
T Consensus       161 DV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         161 DVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             SCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             eCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            99999998764 8999999999999997

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-49  Score=344.33  Aligned_cols=182  Identities=31%  Similarity=0.454  Sum_probs=159.0

Q ss_pred             CcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          104 LTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       104 ~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      |+++||||+++++|++.|++++++..+++|.|.+.. ..+.++.|++|||+|+|.||+.+|+++++|||+|.+||+..+.
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~-~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA-AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL   79 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc-cccccccceEEEEeecccchhhhhhhcccccceEeeccccccc
Confidence            689999999999999999999999999999998533 3467899999999999999999999999999999999987654


Q ss_pred             CC-CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102          184 NL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF  262 (317)
Q Consensus       184 ~~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~  262 (317)
                      .. ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||+++|+++|+++++.+|++|||
T Consensus        80 ~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~  159 (188)
T d1sc6a1          80 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF  159 (188)
T ss_dssp             CCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred             hhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence            32 33345789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC-----cccCCCCceEEcccCCC
Q 042102          263 EHEPDVP-----EELIGLENVVLLPHVAS  286 (317)
Q Consensus       263 ~~EP~~~-----~~L~~~pnvi~tPH~a~  286 (317)
                      ++||...     ++||++|||++|||+||
T Consensus       160 ~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         160 PTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             --------CTTTGGGTTCTTEEEECCCSC
T ss_pred             CCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            9999742     37999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=2.8e-49  Score=339.58  Aligned_cols=179  Identities=27%  Similarity=0.399  Sum_probs=163.5

Q ss_pred             cHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       105 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      |++||||+++++|+++|++.++++.+++|.|.+..  ...++.|+||||||+|.||+.+|+++++|||+|.+||+++...
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~--~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~   78 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV--EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG   78 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS--CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC--CCCcccCceEEEeccccccccceeeeecccccccccccccccc
Confidence            57999999999999999999999999999997532  2346999999999999999999999999999999999986543


Q ss_pred             CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 042102          185 LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEH  264 (317)
Q Consensus       185 ~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~  264 (317)
                      . .....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||+++|+++|++|++.+|++|||++
T Consensus        79 ~-~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~~  157 (181)
T d1qp8a1          79 P-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWG  157 (181)
T ss_dssp             S-SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             c-eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCCC
Confidence            2 334578999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCC-CC-cccCCCCceEEcccCCC
Q 042102          265 EPD-VP-EELIGLENVVLLPHVAS  286 (317)
Q Consensus       265 EP~-~~-~~L~~~pnvi~tPH~a~  286 (317)
                      ||+ +. +||+.+|||++|||+||
T Consensus       158 e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         158 RNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             TTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCCCCChHHcCCCEEeccccCc
Confidence            764 33 38999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=1.3e-49  Score=345.86  Aligned_cols=181  Identities=23%  Similarity=0.352  Sum_probs=163.7

Q ss_pred             cHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       105 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      .++||||+++++|+++|+++.+++.+++|.|.+.. ..+++|+|+||||||+|+||+.+|+++++|||+|.+||+...+.
T Consensus         1 p~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~-~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~   79 (197)
T d1j4aa1           1 PNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP-TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE   79 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTT-CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred             CCHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCC-CcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccc
Confidence            36899999999999999999999999999886433 35889999999999999999999999999999999999876532


Q ss_pred             --CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102          185 --LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF  262 (317)
Q Consensus       185 --~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~  262 (317)
                        .......++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||+++|+++|++|++.||++|||
T Consensus        80 ~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  159 (197)
T d1j4aa1          80 LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY  159 (197)
T ss_dssp             HHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             cccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeecc
Confidence              122345789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC--------------cccCCCCceEEcccCCC
Q 042102          263 EHEPDVP--------------EELIGLENVVLLPHVAS  286 (317)
Q Consensus       263 ~~EP~~~--------------~~L~~~pnvi~tPH~a~  286 (317)
                      ++||...              ++||.+|||++|||+|+
T Consensus       160 ~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         160 EGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             TTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             ccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            9997421              25899999999999985

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=5.5e-28  Score=195.65  Aligned_cols=129  Identities=22%  Similarity=0.254  Sum_probs=114.3

Q ss_pred             CCcEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102            6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   85 (317)
                      ++||||+++++.+...+.|++.|++.+.. ..+ .+.+.+.++++|+++++..+++++++++++|+||+|+++|+|+|||
T Consensus         1 sMpkvli~~~~~~~~~~~L~~~~~v~~~~-~~~-~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~I   78 (130)
T d1ygya2           1 SLPVVLIADKLAPSTVAALGDQVEVRWVD-GPD-RDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNV   78 (130)
T ss_dssp             CCCEEEECSSCCGGGGTTSCSSSEEEECC-TTS-HHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CCCEEEEECCCCHHHHHHHhCCcEEEECC-CCC-HHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeecccccch
Confidence            46999999999999999999999888643 233 3445566889999998888899999999999999999999999999


Q ss_pred             ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCc
Q 042102           86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK  136 (317)
Q Consensus        86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~  136 (317)
                      |+++|+++||.|+|+||+++.+|||+++++||+++|++..+.+.+|+|.|.
T Consensus        79 Dl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2          79 DVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             CHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             hHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            999999999999999999999999999999999999999877777776663

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.7e-24  Score=175.11  Aligned_cols=119  Identities=14%  Similarity=0.184  Sum_probs=99.8

Q ss_pred             CCCcEEEEeCCCChhHHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCC
Q 042102            5 SNNIIVLMVCPVSNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLD   83 (317)
Q Consensus         5 ~~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   83 (317)
                      ++|||||+++++.+...+.|++. +.++........++.+.+.+.++|++++++..++++++|+++|+||+|+++|+|+|
T Consensus         2 k~kmKILv~d~i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gvG~D   81 (132)
T d1sc6a2           2 KDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTN   81 (132)
T ss_dssp             CSSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCT
T ss_pred             CCCCEEEEECCCCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEeccccc
Confidence            46899999999999999999986 33343333333456667778999999988888999999999999999999999999


Q ss_pred             cCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhch
Q 042102           84 KIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI  123 (317)
Q Consensus        84 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~  123 (317)
                      |||+++|+++||.|+|+|++++.+|||++++||++..|++
T Consensus        82 ~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~~~  121 (132)
T d1sc6a2          82 QVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKY  121 (132)
T ss_dssp             TBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999998766665444433

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.90  E-value=2.4e-26  Score=183.46  Aligned_cols=121  Identities=18%  Similarity=0.252  Sum_probs=107.6

Q ss_pred             cEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCCh
Q 042102            8 IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDL   87 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   87 (317)
                      |||+++++++++..+.|++.|.++...+           ++++|+++++   +++++.++++|+||||++.|+|+||+|+
T Consensus         1 Mki~v~~~lp~e~~e~L~~~~~v~~~~d-----------~~~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D~i~~   66 (121)
T d1qp8a2           1 MELYVNFELPPEAEEELRKYFKIVRGGD-----------LGNVEAALVS---RITAEELAKMPRLKFIQVVTAGLDHLPW   66 (121)
T ss_dssp             CEEECCSCCCHHHHHHHHTTCEEECSSC-----------CTTBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEeCCCCHHHHHHhhhcceEeeccc-----------ccccceeeee---ccCHHHHhcCCCceEEEecccCcCCCCH
Confidence            7999999999999999999998774211           4567777664   6899999999999999999999999999


Q ss_pred             hhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH
Q 042102           88 ARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA  167 (317)
Q Consensus        88 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l  167 (317)
                      +.++ +||.|+|++|+++.+||||+++++|++.|+                            ++|+|+|.||+++|+++
T Consensus        67 ~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~----------------------------l~i~G~G~iG~~iA~r~  117 (121)
T d1qp8a2          67 ESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN----------------------------LITYATGGRPRNIAKRE  117 (121)
T ss_dssp             TTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH----------------------------HHHHHTTSCCSCBCCGG
T ss_pred             HHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC----------------------------EEEEcCCHHHHHHHHHH
Confidence            9885 699999999999999999999999999873                            57999999999999999


Q ss_pred             hhCC
Q 042102          168 EAFD  171 (317)
Q Consensus       168 ~~~G  171 (317)
                      ++||
T Consensus       118 ~a~G  121 (121)
T d1qp8a2         118 DYIG  121 (121)
T ss_dssp             GTC-
T ss_pred             HhcC
Confidence            9997

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.90  E-value=6e-24  Score=171.38  Aligned_cols=115  Identities=23%  Similarity=0.326  Sum_probs=99.7

Q ss_pred             CcEEEEeCCCChhHHHHHHhcCeEEEecCCC-ChHHHHhhccCCceEEEEeCCCCCCHHHHhcCC-CceEEEECCCCCCc
Q 042102            7 NIIVLMVCPVSNYLEQEIEKSFKVFKLWHFE-DKEQFINTHKDSIQAVVGSAAAGADAELIESLP-KLEIVATCSVGLDK   84 (317)
Q Consensus         7 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~   84 (317)
                      |||||++.++++...++|++.|+++.....+ ...+++.+.++++|++++++..++++++++++| +||+|+++|+|+||
T Consensus         1 K~kVlit~~~~~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~   80 (129)
T d1gdha2           1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDH   80 (129)
T ss_dssp             CCEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCcc
Confidence            7999999999999999999999987654322 245556677889999998888899999999997 79999999999999


Q ss_pred             CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhh
Q 042102           85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR  121 (317)
Q Consensus        85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r  121 (317)
                      ||+++|+++||+|+|+||+++++|||+++++|+.+++
T Consensus        81 ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          81 IDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             BCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977765555544

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.87  E-value=4.2e-23  Score=166.85  Aligned_cols=118  Identities=13%  Similarity=0.133  Sum_probs=94.7

Q ss_pred             cEEEEeCC--CChhHHHHHHhc--CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCC--CceEEEECCCC
Q 042102            8 IIVLMVCP--VSNYLEQEIEKS--FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLP--KLEIVATCSVG   81 (317)
Q Consensus         8 ~~vl~~~~--~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~--~Lk~i~~~~~G   81 (317)
                      |||++.+.  ...+.++++.+.  +++..... ... +...+.++++|+|++....++++++|+++|  +||+|+++|+|
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~-~~~-~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG   78 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTE-FLD-ENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSS-CCC-TTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCC-CCC-HHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccc
Confidence            68998763  334455666543  55554322 212 233455789999988888899999999865  89999999999


Q ss_pred             CCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHH
Q 042102           82 LDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESD  127 (317)
Q Consensus        82 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~  127 (317)
                      +||||+++|+++||.|+|+|++++++|||++++++|++.|++.+++
T Consensus        79 ~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          79 TDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHH
Confidence            9999999999999999999999999999999999999999997654

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.85  E-value=8.2e-22  Score=159.09  Aligned_cols=123  Identities=15%  Similarity=0.136  Sum_probs=98.8

Q ss_pred             cEEEEeCCCC-hhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCC
Q 042102            8 IIVLMVCPVS-NYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKID   86 (317)
Q Consensus         8 ~~vl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   86 (317)
                      |+|++.+... ...++.|++..++.++. ....++..++.+.+++++++++..++++++|+++|+||+|+++|+|+||||
T Consensus         2 P~v~~ld~~d~~~e~~~L~~~~~v~~~~-~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d~iD   80 (133)
T d1mx3a2           2 PLVALLDGRDCTVEMPILKDVATVAFCD-AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNID   80 (133)
T ss_dssp             CEEEESSCSCCTTTHHHHTTTCEEEECC-CSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTBC
T ss_pred             CEEEEecCCcchhhHHHhcccceEEEec-CCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcccEe
Confidence            7899998543 23356677777666533 332334333445567888888889999999999999999999999999999


Q ss_pred             hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCc
Q 042102           87 LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK  136 (317)
Q Consensus        87 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~  136 (317)
                      +++|+++||.|+|+||+++ ++|||+++++|+++|++++..    +|.|.
T Consensus        81 ~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~----~g~~~  125 (133)
T d1mx3a2          81 IKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAI----TGRIP  125 (133)
T ss_dssp             HHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHH----HSCTT
T ss_pred             eeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHH----hcccc
Confidence            9999999999999999987 579999999999999998764    55565

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.84  E-value=9.4e-22  Score=165.02  Aligned_cols=116  Identities=17%  Similarity=0.192  Sum_probs=98.7

Q ss_pred             HHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeC--CCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcE
Q 042102           20 LEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSA--AAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIR   96 (317)
Q Consensus        20 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~   96 (317)
                      +++.|+++ ++++...+.+...+.+.+++.++|++++++  ...+++|+|+++|+||+|+++|+|+||||+++|+++||.
T Consensus        59 lr~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~  138 (186)
T d2naca2          59 LRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVT  138 (186)
T ss_dssp             CHHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCE
T ss_pred             HHHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCE
Confidence            46778775 666654443334455677789999999874  578999999999999999999999999999999999999


Q ss_pred             EEeCCCCCcHHHHHHH--------HHHHHHHhhchhHHHHHHHcCCC
Q 042102           97 VANTPDVLTDDVADLA--------IGLILAVLRRICESDRYVRSGEW  135 (317)
Q Consensus        97 v~n~~~~~~~~vAE~a--------l~~~L~~~r~~~~~~~~~~~~~w  135 (317)
                      |+|+||+|+.+||||+        +.+++...|++...+..+++|+|
T Consensus       139 V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         139 VAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             EEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             EEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            9999999999999999        78888889999887777777877

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.77  E-value=2.1e-19  Score=145.41  Aligned_cols=113  Identities=16%  Similarity=0.079  Sum_probs=85.3

Q ss_pred             EEEEeCCCC--hhHH-HHHHhcCeEEEe-cCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCC--CceEEEECCCCC
Q 042102            9 IVLMVCPVS--NYLE-QEIEKSFKVFKL-WHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLP--KLEIVATCSVGL   82 (317)
Q Consensus         9 ~vl~~~~~~--~~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~   82 (317)
                      ||++-....  ..+. +++++.+++... .+.+..++ +.+.++++|+|++++..++++++++++|  +||+|++.|+|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~~~e-~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~   80 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPE-TVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGV   80 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTT-TGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCC
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCCCCCHH-HHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCc
Confidence            677754332  2233 344454444322 22222333 4566789999998888899999999764  799999999999


Q ss_pred             CcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhH
Q 042102           83 DKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE  125 (317)
Q Consensus        83 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~  125 (317)
                      ||||+++|+++||.|+|+|++   ++||+++++||+++|++..
T Consensus        81 d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~  120 (134)
T d1j4aa2          81 DNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL  120 (134)
T ss_dssp             TTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999987   5799999999999998754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-15  Score=126.28  Aligned_cols=103  Identities=16%  Similarity=0.188  Sum_probs=87.1

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----CccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      +..|.||+++|+|||.||+.+|+++++|||+|.+++..+....    .-....++++++..+|+++++..    ++++|+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaTG----n~~vI~   94 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTG----CIDIIL   94 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSS----CSCSBC
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecCC----Cccchh
Confidence            3569999999999999999999999999999999998775432    11234689999999999888755    678999


Q ss_pred             HHHHhccCCCcEEEEeC-CCcccCHHHHHHHH
Q 042102          219 RQVINALGPKGVLINIG-RGLLVDEHELVSAL  249 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~-rg~~vd~~aL~~al  249 (317)
                      .+.|+.||+|+++.|++ +..-+|.++|.+..
T Consensus        95 ~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~  126 (163)
T d1li4a1          95 GRHFEQMKDDAIVCNIGHFDVEIDVKWLNENA  126 (163)
T ss_dssp             HHHHTTCCTTEEEEECSSSTTSBCHHHHHHHC
T ss_pred             HHHHHhccCCeEEEEeccccceecHHHHhhcc
Confidence            99999999999999997 56668998887744

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.48  E-value=2.7e-14  Score=118.08  Aligned_cols=111  Identities=17%  Similarity=0.273  Sum_probs=96.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~  221 (317)
                      ++|||||+|.||+.+|++|...|++|.+||+++.+.     .+.....+..|++++||+|++|+|..++++.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            579999999999999999999999999999987542     2344567899999999999999999999888762  357


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      +..+++|.++||++....-....+.+.+.+..+.  .+|.
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA  118 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence            8889999999999999988888999999998887  5664

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.39  E-value=3.7e-13  Score=110.32  Aligned_cols=99  Identities=15%  Similarity=0.191  Sum_probs=84.1

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      -.+.||++.|+|||.+|+.+|++++++|++|++++..|-..     .++ ...+++++++.+|+++.+..    ..++|+
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf-~v~~~~~a~~~aDi~vTaTG----n~~vI~   93 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCTG----NVDVIK   93 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECCS----SSSSBC
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCC-ccCchhHccccCcEEEEcCC----CCcccc
Confidence            35899999999999999999999999999999999876433     233 34789999999999999977    456899


Q ss_pred             HHHHhccCCCcEEEEeCCCcc-cCHHHHHH
Q 042102          219 RQVINALGPKGVLINIGRGLL-VDEHELVS  247 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~-vd~~aL~~  247 (317)
                      .++|+.||+|+++-|+++... +|.++|.+
T Consensus        94 ~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          94 LEHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            999999999999999998765 56666553

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.38  E-value=4.6e-13  Score=110.70  Aligned_cols=111  Identities=10%  Similarity=0.179  Sum_probs=95.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~  221 (317)
                      ++|||||+|.||.++|++|...|++|.+||++.+..     .+.....++.+++..+|+|++++|..+..+.++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            589999999999999999999999999999986542     2334567899999999999999999988877653  446


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      +..+++|.++||++...+-+...+.+.+++..+.  .+|.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7789999999999999998999999999998886  6775

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.37  E-value=1.7e-12  Score=107.12  Aligned_cols=143  Identities=18%  Similarity=0.222  Sum_probs=95.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCc-cccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNY-KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~-~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      ++|||||+|.||+.+|+.|+..|.+|.+|||+.+..     .+. ....+..+.+++||+|++++|.. .+..++ ++..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhh-hhhh
Confidence            589999999999999999999999999999975421     111 12234457889999999999954 566666 4567


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCC-CCCC-cccCCCCceEEcccCCCccHHHHHHH
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHE-PDVP-EELIGLENVVLLPHVASATVETRKAM  295 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~E-P~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~  295 (317)
                      ..+++++++++++....-.. .....+....+..-.+...+.. |... ..|+....+++||+-++ +.+..+.+
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~-~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~-~~~~~~~v  151 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIA-EPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT-DPEQLACL  151 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHH-HHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC-CHHHHHHH
T ss_pred             hhcccccceeeccccchHHH-HHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCC-CHHHHHHH
Confidence            88999999999976543322 3334444443332222221111 2112 35788888999998654 44444443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.25  E-value=3.7e-12  Score=106.49  Aligned_cols=110  Identities=8%  Similarity=0.136  Sum_probs=92.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------------CccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------------NYKYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+|||||+|.||..||++|...|++|.+|||++++..             +.....++.+.+..+|.+++++|..+.+..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            5899999999999999999999999999999875321             111234566788999999999999998887


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      ++ ...+..+++|.++||++...+-+...+.+.+.+..+.  .+|.
T Consensus        83 v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda  125 (176)
T d2pgda2          83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS  125 (176)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred             HH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence            65 5688899999999999999999999999999998887  5664

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.21  E-value=5e-11  Score=98.44  Aligned_cols=143  Identities=15%  Similarity=0.133  Sum_probs=99.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CCc--cccCCHHH-hcccCCEEEEeccCChhhhcccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LNY--KYYPNLID-LASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~~--~~~~~l~e-l~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      ++|+|||+|.||.++|+.|+..|.  +|++||++....     .+.  ....+.++ ....+|+|++++|.. ++..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~-~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch-hhhhhh-
Confidence            479999999999999999998885  799999876432     111  12233333 345799999999943 344455 


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCC-CCCC-cccCCCCceEEcccCCCccHHHHHH
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHE-PDVP-EELIGLENVVLLPHVASATVETRKA  294 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~E-P~~~-~~L~~~pnvi~tPH~a~~t~~~~~~  294 (317)
                      ++....+++++++++++.....-.+++.+.+...-+.+--+...+.. |... ..|++..++++|||-. .+.+..+.
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~-~~~~~~~~  156 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK-TDKKRLKL  156 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSS-SCHHHHHH
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCC-CCHHHHHH
Confidence            45667799999999999876666667777777665655555544432 3222 3689999999999965 34444443

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.07  E-value=5.7e-11  Score=97.11  Aligned_cols=108  Identities=15%  Similarity=0.190  Sum_probs=85.2

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhcc
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL  225 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~m  225 (317)
                      +|||||+|.||..||++|...|..+.+ +++..+..    ......+..+.+.++|++++++|..+++.... ...+..+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLVW-NRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEEE-CSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEEE-eCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence            699999999999999999988887654 44433221    01112334567778999999999988877554 5678899


Q ss_pred             CCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       226 k~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      +++.++||+++...-....+.+.+++..+.  .+|.
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            999999999999999999999999998887  6675

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.93  E-value=4.3e-10  Score=91.33  Aligned_cols=101  Identities=14%  Similarity=0.181  Sum_probs=76.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      ++|||||+|.||+.+|+.|...|++|.++++......     +.....+++|++++||+|++++|...... .+ .....
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HH-Hhhcc
Confidence            5899999999999999999999999999987664321     22234578899999999999999765433 22 12222


Q ss_pred             ccCCCcEEEEeCCCcccCHHHHHHHHHhCC
Q 042102          224 ALGPKGVLINIGRGLLVDEHELVSALLQGR  253 (317)
Q Consensus       224 ~mk~gavlVN~~rg~~vd~~aL~~al~~g~  253 (317)
                        ..+.++|+++.......+.+.+.+++.+
T Consensus        79 --~~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 --HVRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             --TCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             --cCCceeeccCcCCHHHHHHHHHHHhccC
Confidence              2468899999888777778887776543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.87  E-value=2.8e-09  Score=86.55  Aligned_cols=95  Identities=19%  Similarity=0.300  Sum_probs=75.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      ++|||||+|+||+++++.|...|.+|.+++|+.++.      .+.....+.++++++||+|+++++  |+.    -++.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~----~~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL----FETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG----HHHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh----HHHHh
Confidence            589999999999999999999999999999875432      234455789999999999999986  321    25677


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQ  251 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~  251 (317)
                      +.++++.++|++.-|  +..+.|.+.+..
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~  101 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQ  101 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhcc
Confidence            889999999999877  455667777644

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.86  E-value=1.5e-09  Score=90.11  Aligned_cols=110  Identities=16%  Similarity=0.230  Sum_probs=87.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----C--------ccccCC---HHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----N--------YKYYPN---LIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~--------~~~~~~---l~el~~~aDvV~~~lp~~~~  212 (317)
                      ++|||||+|.||..+|++|...|++|.+|||++++..     +        .....+   +-..+..++.+..+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            5899999999999999999999999999999764321     0        011223   33456788999999998887


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV  261 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV  261 (317)
                      ....+ ......+++|.++||++....-+...+.+.+.+..+.  .+|.
T Consensus        82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~--~lda  127 (178)
T d1pgja2          82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR--FLGM  127 (178)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE--EEEE
T ss_pred             hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhccee--Eecc
Confidence            77666 4567788999999999999999999999999988887  4553

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=3.5e-09  Score=85.57  Aligned_cols=82  Identities=15%  Similarity=0.177  Sum_probs=67.6

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhcc
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL  225 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~m  225 (317)
                      .-++|+||| +|.||+.+|++|+..|++|.+||+....        ..++.++.+|++++++|.... .. +-.+.+..+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~-~~-v~~~~~~~~   77 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------VAESILANADVVIVSVPINLT-LE-TIERLKPYL   77 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------GHHHHHTTCSEEEECSCGGGH-HH-HHHHHGGGC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc--------ccchhhhhccccccccchhhh-ee-eeecccccc
Confidence            346999999 9999999999999999999999986532        356778999999999996543 32 346778889


Q ss_pred             CCCcEEEEeCCCc
Q 042102          226 GPKGVLINIGRGL  238 (317)
Q Consensus       226 k~gavlVN~~rg~  238 (317)
                      ++++++++++.-.
T Consensus        78 ~~~~iiiD~~Svk   90 (152)
T d2pv7a2          78 TENMLLADLTSVK   90 (152)
T ss_dssp             CTTSEEEECCSCC
T ss_pred             cCCceEEEecccC
Confidence            9999999998744

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.71  E-value=5.1e-09  Score=85.92  Aligned_cols=91  Identities=15%  Similarity=0.188  Sum_probs=72.7

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC--------c----cccCCHHHhcccCCEEEEeccC-Ch
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN--------Y----KYYPNLIDLASNCQILVVACSL-TE  211 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~--------~----~~~~~l~el~~~aDvV~~~lp~-~~  211 (317)
                      .+...+|.|||.|..|...++.++++|++|.++|.+......        .    .....+++.+++||+|+.++-. ..
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            457789999999999999999999999999999987543210        0    1123478889999999887432 33


Q ss_pred             hhhccccHHHHhccCCCcEEEEeC
Q 042102          212 ETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       212 ~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ....+|.++.++.||||+++||++
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee
Confidence            457799999999999999999985

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.63  E-value=5.2e-08  Score=80.20  Aligned_cols=104  Identities=12%  Similarity=0.103  Sum_probs=75.7

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------------C-------CccccCCHHHhcccCCEEEEec
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------------L-------NYKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~-------~~~~~~~l~el~~~aDvV~~~l  207 (317)
                      .||++|||.|.+|..+|..|...|++|.+|++++...             .       ......++.|.+++||+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            4799999999999999999999999999999864321             0       0112357899999999999999


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRL  254 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i  254 (317)
                      |... ++.++ ++.-..++++.+++ ...|....+..+.+.+.....
T Consensus        81 ~~~~-~~~~~-~~i~~~l~~~~~iv-~~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          81 PAIH-HASIA-ANIASYISEGQLII-LNPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             CGGG-HHHHH-HHHGGGCCTTCEEE-ESSCCSSHHHHHHHHHHHTTC
T ss_pred             chhH-HHHHH-HHhhhccCCCCEEE-EeCCCCccHHHHHHHHHHhcC
Confidence            8543 34443 45566789999877 445555555556666665543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.55  E-value=7.5e-08  Score=79.88  Aligned_cols=90  Identities=11%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Cccc-----------------------------c
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYKY-----------------------------Y  190 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----------------------------~  190 (317)
                      .+..-+|.|||.|..|...++.++++|+.|.++|.+.....     ...+                             .
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            45677999999999999999999999999999997764320     0000                             0


Q ss_pred             CCHHHhcccCCEEEEe--ccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102          191 PNLIDLASNCQILVVA--CSLTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       191 ~~l~el~~~aDvV~~~--lp~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ..+.+.+++||+|+.+  +|..+ .-.+|.++.++.||||+++||++
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~-aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHhhhhheeeeecCCcc-cceeehHHHHHhcCCCcEEEEEe
Confidence            1244568899999865  45444 45689999999999999999985

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=6.6e-09  Score=83.85  Aligned_cols=84  Identities=15%  Similarity=0.014  Sum_probs=57.2

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhcc
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL  225 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~m  225 (317)
                      |||||+|+||+.+++.|+.-+..+.+|+|++.+.     .......++.+++++||+|++|+|... .     .+.+..+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~-i-----~~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-I-----KTVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-H-----HHHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchh-h-----hHHHhhh
Confidence            7999999999999999987443346888876542     122335678899999999999999643 2     2345555


Q ss_pred             -CCCcEEEEeCCCccc
Q 042102          226 -GPKGVLINIGRGLLV  240 (317)
Q Consensus       226 -k~gavlVN~~rg~~v  240 (317)
                       +++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             478999999877654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.45  E-value=1e-07  Score=77.77  Aligned_cols=91  Identities=16%  Similarity=0.262  Sum_probs=68.7

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------C--ccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------N--YKYYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      .+.++++.|||.|.||+.+++.|...|+ ++.+++|+.+...      +  ...+.++.+.+.++|+|+.+++.   ...
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss---~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA---PHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS---SSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC---CCc
Confidence            4889999999999999999999999998 6999999854321      1  22345788889999999999763   356


Q ss_pred             cccHHHHhcc------CCCcEEEEeCCCc
Q 042102          216 IVNRQVINAL------GPKGVLINIGRGL  238 (317)
Q Consensus       216 li~~~~l~~m------k~gavlVN~~rg~  238 (317)
                      +|+++.++..      ++..+|||.|...
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavPr  126 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANPR  126 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence            7888777532      2345788876544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.39  E-value=1.7e-07  Score=75.45  Aligned_cols=100  Identities=17%  Similarity=0.179  Sum_probs=67.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      ++|||||+|+||+++++.|...| .+|.+++|+++..      .+.....+.++ +++||+|+++++  |+.-    ++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk--P~~~----~~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK--PQDM----EAA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC--HHHH----HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC--HHHH----HHh
Confidence            58999999999999999886556 7999999986532      12333344444 678999999987  3211    233


Q ss_pred             HhccC-CCcEEEEeCCCcccCHHHHHHHHHh-CCceEE
Q 042102          222 INALG-PKGVLINIGRGLLVDEHELVSALLQ-GRLGGA  257 (317)
Q Consensus       222 l~~mk-~gavlVN~~rg~~vd~~aL~~al~~-g~i~ga  257 (317)
                      ++.++ .+.++|++.-|--  .+.+.+.+.. .++..+
T Consensus        74 ~~~l~~~~~~viS~~ag~~--~~~l~~~l~~~~~iir~  109 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGLS--VGTLSRYLGGTRRIVRV  109 (152)
T ss_dssp             HTTCCCTTCEEEECCTTCC--HHHHHHHTTSCCCEEEE
T ss_pred             HHHHhhcccEEeecccCCC--HHHHHHHhCcCcceEee
Confidence            44444 4788999877764  4566666642 344433

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.35  E-value=1.7e-07  Score=71.77  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=66.6

Q ss_pred             ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------Ccc--ccCCHHHhcccCCEEEEeccCC
Q 042102          140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------NYK--YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~--~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      +|+.-+++|++|.|||.|.+|.+-++.|..+|++|+++++...+..       ...  ...--++.+..+++|+.+.. +
T Consensus         4 ~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~-d   82 (113)
T d1pjqa1           4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD-D   82 (113)
T ss_dssp             EEEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-C
T ss_pred             cceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC-C
Confidence            4556689999999999999999999999999999999987654321       111  00112345778888777644 2


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      +    -+|++..+.+|+..++||+.
T Consensus        83 ~----~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          83 D----TVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             H----HHHHHHHHHHHHTTCEEEET
T ss_pred             H----HHHHHHHHHHHHcCCEEEeC
Confidence            2    35677778888899999975

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.25  E-value=3e-06  Score=71.21  Aligned_cols=143  Identities=10%  Similarity=0.063  Sum_probs=89.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------------CC-------------CccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------------NL-------------NYKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------------~~-------------~~~~~~~l~el~~~aDvV  203 (317)
                      ++|+|||+|.+|..+|..+...|.+|++||...+.            ..             ......++++.++.||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            58999999999999999999999999999975421            00             012346788999999999


Q ss_pred             EEeccCChh---------hhcccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHH-Hh--CCceEEEee-CCCCCCCC
Q 042102          204 VVACSLTEE---------TQHIVN--RQVINALGPKGVLINIGRGLLVDEHELVSAL-LQ--GRLGGAGLD-VFEHEPDV  268 (317)
Q Consensus       204 ~~~lp~~~~---------t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al-~~--g~i~ga~lD-V~~~EP~~  268 (317)
                      ++|+|....         ....++  ...++..+++.++|..|.-.+=-.+.+...+ ++  +...+--+. ++.+|-..
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~  160 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence            999985211         111111  2345567789999998886664444443332 21  222111111 15666654


Q ss_pred             Cc----ccCCCCceEEcccCCCccHHHHHHH
Q 042102          269 PE----ELIGLENVVLLPHVASATVETRKAM  295 (317)
Q Consensus       269 ~~----~L~~~pnvi~tPH~a~~t~~~~~~~  295 (317)
                      +.    .+...|.+++    |+.+.++.+.+
T Consensus       161 ~G~a~~d~~~~~~iVi----G~~~~~~~~~~  187 (202)
T d1mv8a2         161 ESTAIKDYDFPPMTVI----GELDKQTGDLL  187 (202)
T ss_dssp             TTSHHHHHHSCSCEEE----EESSHHHHHHH
T ss_pred             ccchhhhhcCCCeEEE----EeCCHHHHHHH
Confidence            42    4677787765    44455544443

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.23  E-value=4e-07  Score=74.48  Aligned_cols=90  Identities=14%  Similarity=0.199  Sum_probs=69.9

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~  218 (317)
                      -|++|+|+|||||.-|++=|.+|+.-|++|.+=-|...+.      .++ ...+.+|+.+.+|+|.+.+|...+ ..+..
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf-~v~~~~eA~~~aDiim~L~PD~~q-~~vy~   90 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGL-KVADVKTAVAAADVVMILTPDEFQ-GRLYK   90 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTC-EEECHHHHHHTCSEEEECSCHHHH-HHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcc-ccccHHHHhhhcCeeeeecchHHH-HHHHH
Confidence            4789999999999999999999999999987655433221      222 346899999999999999995544 33566


Q ss_pred             HHHHhccCCCcEEEEeCCC
Q 042102          219 RQVINALGPKGVLINIGRG  237 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg  237 (317)
                      ++....||+|+.+. .++|
T Consensus        91 ~~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          91 EEIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             HHTGGGCCTTCEEE-ESCC
T ss_pred             HhhhhhcCCCcEEE-Eecc
Confidence            77889999999864 4454

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.21  E-value=1.6e-06  Score=73.12  Aligned_cols=103  Identities=17%  Similarity=0.244  Sum_probs=78.3

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcc-cCCEEEEeccCChhhhcccc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLAS-NCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~-~aDvV~~~lp~~~~t~~li~  218 (317)
                      +|.|+||+|-|+|++|+.+|+.|..+|++|+++|......     .+. ...+.++++. .||+++-|.     +.+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~-~~~~~~~~~~~~~DI~iPcA-----~~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGH-TAVALEDVLSTPCDVFAPCA-----MGGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcc-cccCccccccccceeeeccc-----cccccc
Confidence            5999999999999999999999999999999998764321     122 2345667665 799888662     457899


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++..+.++- -+++-.+.+++.+++ ..+.|.++.|.
T Consensus        98 ~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLDC-SVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             HHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             HHHHhhhhh-heeeccCCCCcchhh-HHHHhcccceE
Confidence            999999973 566777777777664 45677787775

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1.5e-06  Score=69.87  Aligned_cols=87  Identities=16%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC-------c-----cccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN-------Y-----KYYPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-------~-----~~~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      ++|+|||.|.||+.+|..|...|.+|..++|.......       .     ....+..+.+..+|+|+++++.. ++...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~-~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeeccc-chHHH
Confidence            58999999999999999999999999999987654211       0     11234556778999999999953 34443


Q ss_pred             ccHHHHhccCCCcEEEEeCCC
Q 042102          217 VNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg  237 (317)
                      + +.....+++++.++.+..|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            3 3445567788988888666

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.1e-06  Score=71.83  Aligned_cols=99  Identities=15%  Similarity=0.145  Sum_probs=73.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CC------------------ccccCCHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LN------------------YKYYPNLI  194 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~------------------~~~~~~l~  194 (317)
                      ++|+|||.|.||+.+|..+...|++|..+|++++..                .+                  .....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            699999999999999999999999999999876421                00                  11245778


Q ss_pred             HhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          195 DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       195 el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      +.++.||+|+=++|-+-+.+.-+-++.-+.++++++|...+.+-  ....|...+
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~  137 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANAT  137 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTS
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhc
Confidence            89999999999999888766544455556688898886554433  344455544

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.03  E-value=2.8e-06  Score=70.17  Aligned_cols=88  Identities=17%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------------CC-------ccccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------------LN-------YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~~-------~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      ++|+|||.|.+|.++|..|...|.+|..|.|..++.             ..       .....+++++++.+|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            589999999999999999999999999997743210             00       1124678899999999999999


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIGRGLL  239 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg~~  239 (317)
                      .. ..+.++ ++....+++ ..+|.++.|-.
T Consensus        81 s~-~~~~~~-~~l~~~l~~-~~ii~~tkg~~  108 (180)
T d1txga2          81 TD-GVLPVM-SRILPYLKD-QYIVLISKGLI  108 (180)
T ss_dssp             GG-GHHHHH-HHHTTTCCS-CEEEECCCSEE
T ss_pred             hh-hhHHHH-Hhhcccccc-ceecccccCcc
Confidence            43 344443 334455655 45666666654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=2.3e-06  Score=62.95  Aligned_cols=62  Identities=16%  Similarity=0.103  Sum_probs=45.0

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC------cc--ccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN------YK--YYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~------~~--~~~~l~el~~~aDvV~~~  206 (317)
                      +++||+|+|+|+|..|+++|+.|...|++|.++|....+...      ..  ....-++.+.+.|+|++.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence            578999999999999999999999999999999876543211      00  011123456677777665

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.01  E-value=3e-05  Score=64.26  Aligned_cols=150  Identities=11%  Similarity=0.046  Sum_probs=96.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----------------------CCccccCCHHHhcccCCEEEE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----------------------LNYKYYPNLIDLASNCQILVV  205 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----------------------~~~~~~~~l~el~~~aDvV~~  205 (317)
                      ++|+|||+|.+|..+|..++ .|++|+++|.+++.-                       .......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            58999999999999998774 699999999765320                       001122355666789999999


Q ss_pred             eccCChhhhc-ccc-------HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCc----ccC
Q 042102          206 ACSLTEETQH-IVN-------RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE----ELI  273 (317)
Q Consensus       206 ~lp~~~~t~~-li~-------~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~----~L~  273 (317)
                      ++|......+ ..+       .+.+...+++.++|.-+.-.+=..+.+..-+.+.++.      +.+|-..+.    .+.
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            9996543221 111       1223345678888888776666667777777666653      567766543    467


Q ss_pred             CCCceEEcccCCCccHHHHHHHHHHHHHHHHHHH
Q 042102          274 GLENVVLLPHVASATVETRKAMADLVVGNLQAHF  307 (317)
Q Consensus       274 ~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~  307 (317)
                      ..|++++--+-. .+. ...+..+.+++.+.+..
T Consensus       154 ~p~riv~G~~~~-~~~-~~~~~~~~~~~l~~~~~  185 (196)
T d1dlja2         154 YPSRIIVSCEEN-DSP-KVKADAEKFALLLKSAA  185 (196)
T ss_dssp             SCSCEEEECCTT-SCH-HHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCHh-hHH-HHHHHHHHHHHHHHhhh
Confidence            778887765532 222 23444555666666554

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=8.2e-06  Score=66.33  Aligned_cols=129  Identities=15%  Similarity=0.196  Sum_probs=88.3

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.++.||++.|||-+. +|+.++..|...|++|+.++...         .++.+.+++||+|+.++.    ..++|..+.
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------~~l~~~~~~ADivI~a~G----~p~~i~~~~   98 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVG----KPGFIPGDW   98 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSC----CTTCBCTTT
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc---------chhHHHHhhhhHhhhhcc----Ccccccccc
Confidence            4468999999999998 89999999999999998876432         367889999999999987    346787664


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVG  301 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~  301 (317)
                         +|+|+++||+|--.+.          +|++   .-||..+      ...+ ---.+||=-||...-...-+.+.+++
T Consensus        99 ---vk~g~vvIDvGi~~~~----------~~~~---~Gdvd~~------~v~~-~a~~~TPvPGGVGP~Tva~L~~N~v~  155 (166)
T d1b0aa1          99 ---IKEGAIVIDVGINRLE----------NGKV---VGDVVFE------DAAK-RASYITPVPGGVGPMTVATLIENTLQ  155 (166)
T ss_dssp             ---SCTTCEEEECCCEECT----------TSCE---ECSBCHH------HHHH-HCSEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             ---cCCCcEEEecCceecC----------CCCE---EeccccH------hHHh-heeEeCCCCCcccHHHHHHHHHHHHH
Confidence               5899999999754321          3443   2343211      1111 12268998888765444444444444


Q ss_pred             HHHHHH
Q 042102          302 NLQAHF  307 (317)
Q Consensus       302 nl~~~~  307 (317)
                      ..+++.
T Consensus       156 a~~~~~  161 (166)
T d1b0aa1         156 ACVEYH  161 (166)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            444443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=5.3e-06  Score=67.94  Aligned_cols=92  Identities=10%  Similarity=0.051  Sum_probs=66.6

Q ss_pred             ccccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCC----CC----cc--------ccCCHHHhcccCCEEE
Q 042102          142 MTTKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPN----LN----YK--------YYPNLIDLASNCQILV  204 (317)
Q Consensus       142 ~~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~----~~----~~--------~~~~l~el~~~aDvV~  204 (317)
                      .+.+++||++.|||-+++ |+.+|..|...|++|..++......    ..    ..        ....+++...++|+|+
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            466899999999998875 9999999999999998776432110    00    00        0122677788999999


Q ss_pred             EeccCChhhhcc-ccHHHHhccCCCcEEEEeCCCccc
Q 042102          205 VACSLTEETQHI-VNRQVINALGPKGVLINIGRGLLV  240 (317)
Q Consensus       205 ~~lp~~~~t~~l-i~~~~l~~mk~gavlVN~~rg~~v  240 (317)
                      .+++..    ++ +..++   .|+|+++||+|-....
T Consensus       103 savG~p----~~~i~~d~---ik~GavvIDvGi~~~~  132 (171)
T d1edza1         103 TGVPSE----NYKFPTEY---IKEGAVCINFACTKNF  132 (171)
T ss_dssp             ECCCCT----TCCBCTTT---SCTTEEEEECSSSCCB
T ss_pred             EccCCC----ccccChhh---cccCceEeeccccccc
Confidence            998843    33 55543   5899999999865433

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.4e-05  Score=65.35  Aligned_cols=135  Identities=15%  Similarity=0.180  Sum_probs=86.6

Q ss_pred             cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102          143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      +.+++||++.|||-+. +|+.+|..|...|++|..++...         .++.+..+++|+++++.+.    .+++..+.
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t---------~~l~~~~~~aDivi~a~G~----~~~i~~~~  100 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------AHLDEEVNKGDILVVATGQ----PEMVKGEW  100 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc---------ccHHHHHhhccchhhcccc----cccccccc
Confidence            4579999999999987 89999999999999999887532         3577889999999999883    46777654


Q ss_pred             HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHH
Q 042102          222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVG  301 (317)
Q Consensus       222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~  301 (317)
                         .|+|+++||++--.+.|.+.    ...+++.   -||-.      +...+. --.+||-=||...-...-+.+.+++
T Consensus       101 ---vk~g~iviDvgi~~~~~~~~----~~~~~~~---gdvd~------~~v~~~-a~~~TPvPGGVGp~Tva~L~~N~v~  163 (170)
T d1a4ia1         101 ---IKPGAIVIDCGINYVPDDKK----PNGRKVV---GDVAY------DEAKER-ASFITPVPGGVGPMTVAMLMQSTVE  163 (170)
T ss_dssp             ---SCTTCEEEECCCBC--------------CCB---CSBCH------HHHTTT-CSEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             ---ccCCCeEeccCccccccccc----CCCCEEe---cccch------Hhhhhh-ceEeCCCCCchhHHHHHHHHHHHHH
Confidence               68999999998655444321    1233343   33321      111111 2358997566554443444444444


Q ss_pred             HHHHHH
Q 042102          302 NLQAHF  307 (317)
Q Consensus       302 nl~~~~  307 (317)
                      --++|+
T Consensus       164 a~~r~l  169 (170)
T d1a4ia1         164 SAKRFL  169 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            444444

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.89  E-value=2.4e-06  Score=71.02  Aligned_cols=99  Identities=19%  Similarity=0.141  Sum_probs=72.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-c-----------cccCCHHHhcccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-Y-----------KYYPNLIDLASNC  200 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-~-----------~~~~~l~el~~~a  200 (317)
                      ++|+|||.|.||+.+|..+...|++|..||++++...                + .           ....+..+.+..|
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            4799999999999999999999999999998754210                0 0           0011223457899


Q ss_pred             CEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102          201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL  249 (317)
Q Consensus       201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al  249 (317)
                      |+|+-+.|-+-+.+.=+-++.-+.++++++|...+.+-.+  ..|.+.+
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~  131 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKAL  131 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGC
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhc
Confidence            9999999998887765556666778999998776655444  4455544

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.88  E-value=4.9e-06  Score=69.33  Aligned_cols=90  Identities=11%  Similarity=0.077  Sum_probs=63.2

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-------------CCC------ccccCCHHHhcccCCEEEEec
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-------------NLN------YKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-------------~~~------~~~~~~l~el~~~aDvV~~~l  207 (317)
                      .-++|+|||.|.+|.++|..|...|.+|..|.|+++.             ..+      .....+++++++.+|+|++++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiav   85 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   85 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECS
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcC
Confidence            3357999999999999999999999999999875421             011      123467999999999999999


Q ss_pred             cCChhhhccccH---HH-HhccCCCcEEEEeCCC
Q 042102          208 SLTEETQHIVNR---QV-INALGPKGVLINIGRG  237 (317)
Q Consensus       208 p~~~~t~~li~~---~~-l~~mk~gavlVN~~rg  237 (317)
                      |.. ..+.++.+   .. ....+++..+|+++-|
T Consensus        86 Ps~-~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          86 PTQ-FLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             CHH-HHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             cHH-HHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            932 23333321   00 1123567788998876

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.87  E-value=5e-06  Score=70.13  Aligned_cols=90  Identities=17%  Similarity=0.337  Sum_probs=64.9

Q ss_pred             cccC-CeEEEEecChhHHHHHHHHhh------CCCEEEE-eCCCCCC-----CCCcc----ccCCHHHhcccCCEEEEec
Q 042102          145 KFTG-KSVGILGMGRIGTAIAKRAEA------FDCIIGY-NSRTEKP-----NLNYK----YYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g-~~vgIiG~G~iG~~~a~~l~~------~G~~V~~-~~~~~~~-----~~~~~----~~~~l~el~~~aDvV~~~l  207 (317)
                      -+.| |+|+|||||.-|++=|..|+.      .|.+|.+ .......     ..++.    ...+..|+.++||+|.+.+
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            4678 899999999999999999998      5566654 3332221     12322    1346889999999999999


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                      |...+.. +. ++....||+|+.+.= +.|
T Consensus       120 PDe~Q~~-vy-~~I~p~Lk~G~~L~F-aHG  146 (226)
T d1qmga2         120 SDSAQAD-NY-EKVFSHMKPNSILGL-SHG  146 (226)
T ss_dssp             CHHHHHH-HH-HHHHHHSCTTCEEEE-SSS
T ss_pred             chHHHHH-HH-HHHHHhcCCCceeee-cch
Confidence            9766533 45 468899999998653 444

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.70  E-value=1.9e-05  Score=61.30  Aligned_cols=66  Identities=20%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCc-------cccCCHHHh-cccCCEEEEeccCChhhh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNY-------KYYPNLIDL-ASNCQILVVACSLTEETQ  214 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~-------~~~~~l~el-~~~aDvV~~~lp~~~~t~  214 (317)
                      |++.|+|+|.+|+.+|+.|...|.+|.++|.+++..     .+.       .....++++ +.+||.++++++.+..+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence            578999999999999999999999999998765421     111       112335555 889999999999776644

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.66  E-value=4.5e-05  Score=65.25  Aligned_cols=104  Identities=14%  Similarity=0.170  Sum_probs=76.9

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHh-cccCCEEEEeccCChhhhcc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDL-ASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el-~~~aDvV~~~lp~~~~t~~l  216 (317)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++.|.+....      .+.. ..+.+++ -..||+++-|.     ..+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~~cDIl~PcA-----~~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc-ccCCcccccccccEecccc-----cccc
Confidence            46999999999999999999999999999999988754321      1111 2344554 45699988874     3677


Q ss_pred             ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      |+++....++- .+++-.+...+.+.++- +.|.+..|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            88888888873 46677777888877654 556666665

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.52  E-value=0.00012  Score=63.02  Aligned_cols=104  Identities=17%  Similarity=0.180  Sum_probs=73.7

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-----C------------------------CCccccCCHH
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-----N------------------------LNYKYYPNLI  194 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-----~------------------------~~~~~~~~l~  194 (317)
                      .+|.|+||.|=|+|++|+.+|+.|...|++|++.+.....     .                        .+.....+.+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            3689999999999999999999999999998765533210     0                        0111122334


Q ss_pred             Hhc-ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          195 DLA-SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       195 el~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +++ ..||+++-|..     .+.|+++..+.++- .+++-.+-+++ ..++ .+.|.+..|.
T Consensus       107 ~i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         107 AIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hhccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            544 47999888843     56788888888863 56777778886 5555 4778888886

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.50  E-value=0.00019  Score=58.07  Aligned_cols=81  Identities=14%  Similarity=0.165  Sum_probs=55.6

Q ss_pred             CCeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCCC--CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPNL--NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN  223 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~  223 (317)
                      ..+|||||+|.||+..++.++.. ++++. +++++.+...  ......+.+++..+.|+|++++|......     -..+
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~-----~a~~   77 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIP-----EQAP   77 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHH-----HHHH
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccHH-----HHHH
Confidence            35799999999999999999876 56654 6666654332  22335567788899999999999764322     2233


Q ss_pred             ccCCCcEEEE
Q 042102          224 ALGPKGVLIN  233 (317)
Q Consensus       224 ~mk~gavlVN  233 (317)
                      .++.|.-+|.
T Consensus        78 aL~aG~~vv~   87 (170)
T d1f06a1          78 KFAQFACTVD   87 (170)
T ss_dssp             HHTTTSEEEC
T ss_pred             HHHCCCcEEE
Confidence            4556655443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=7.7e-05  Score=60.51  Aligned_cols=107  Identities=11%  Similarity=0.046  Sum_probs=68.5

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------CccccCCHHH-hcccCCEEEEeccCChh
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYKYYPNLID-LASNCQILVVACSLTEE  212 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~e-l~~~aDvV~~~lp~~~~  212 (317)
                      +..+.||+|.|+|.|..+++++..|...|++|.+++|+..+..         ......++++ ...++|+|+.+.|..-.
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~   92 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS   92 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence            3467899999999999999999999999999999999864321         0111123333 24678999999986543


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG  252 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g  252 (317)
                      ..  ...-.++.++++.+++++--.+. .+.-|..|-+.|
T Consensus        93 ~~--~~~~~~~~~~~~~~v~D~vY~P~-~T~ll~~A~~~G  129 (170)
T d1nyta1          93 GD--IPAIPSSLIHPGIYCYDMFYQKG-KTPFLAWCEQRG  129 (170)
T ss_dssp             TC--CCCCCGGGCCTTCEEEESCCCSS-CCHHHHHHHHTT
T ss_pred             cC--CCCCcHHHhccCcEEEEeecCCC-CCHHHHHHHHcC
Confidence            21  11222345677777777654442 333333333443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=8.3e-05  Score=56.27  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      .+.||||+|.|..|+.++..++.+|+++.++|++++..
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            45689999999999999999999999999999877643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.39  E-value=4.3e-05  Score=61.35  Aligned_cols=102  Identities=15%  Similarity=0.057  Sum_probs=64.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------C--------ccccCCHHHhcccCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------N--------YKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~--------~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ++|+|.|||.|.||+.+|+.|..-|.+|+++||+.....      .        ......+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            468999999999999999999999999999999865321      0        00112355678889999888875432


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRL  254 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i  254 (317)
                      ..     ......+.+..+++++.-. -+...+.+.......
T Consensus        81 ~~-----~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  116 (182)
T d1e5qa1          81 AT-----VIKSAIRQKKHVVTTSYVS-PAMMELDQAAKDAGI  116 (182)
T ss_dssp             HH-----HHHHHHHHTCEEECSSCCC-HHHHHTHHHHHHTTC
T ss_pred             hH-----HHHHHHhhccceeecccCc-HHHHHHHHHhccccc
Confidence            11     1122334566677765322 122344444444333

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.34  E-value=0.0013  Score=57.72  Aligned_cols=105  Identities=13%  Similarity=0.225  Sum_probs=72.7

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-----CC----------------Cc-cccCCHHHhc-cc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-----NL----------------NY-KYYPNLIDLA-SN  199 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-----~~----------------~~-~~~~~l~el~-~~  199 (317)
                      ..+|.|+||.|=|+|++|+.+|+.|...|++|++.+.+...     ..                .+ ....+.++++ ..
T Consensus        31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (293)
T d1hwxa1          31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD  110 (293)
T ss_dssp             CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence            45799999999999999999999999999998766432110     00                00 0011123343 47


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ||+++-|.     +.+.|+.+..+.++- .+++-.+.|++-+ ++ .+.|.+..|.
T Consensus       111 ~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~t~-eA-~~~L~~~gI~  158 (293)
T d1hwxa1         111 CDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPTTP-QA-DKIFLERNIM  158 (293)
T ss_dssp             CSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCCCc-ch-HHHHHHCCCE
Confidence            99988773     467788888888864 4677888888644 44 4677777776

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00012  Score=59.06  Aligned_cols=86  Identities=21%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc------ccCC-HHHhcccCCEEEEeccCChhhh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK------YYPN-LIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~------~~~~-l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++.+..     ++.      ...+ .+......|+++.+....... 
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~-  105 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI-  105 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence            578999999999999999999999999999988765421     111      0111 223445567777665533211 


Q ss_pred             ccccHHHHhccCCCcEEEEeC
Q 042102          215 HIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~  235 (317)
                       .+ ...++.++++..++.+|
T Consensus       106 -~~-~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         106 -DF-NIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             -CT-TTGGGGEEEEEEEEECC
T ss_pred             -hH-HHHHHHhhccceEEEec
Confidence             11 34566677777777775

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00016  Score=59.19  Aligned_cols=91  Identities=19%  Similarity=0.181  Sum_probs=61.2

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC-------------c-c---cc---CCHHHhcccCC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN-------------Y-K---YY---PNLIDLASNCQ  201 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-------------~-~---~~---~~l~el~~~aD  201 (317)
                      +.+++|++|.|+|.|..|++++..|...|. ++..++|+.+....             . .   ..   .++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            346899999999999999999999999998 68888887653210             0 0   01   22455678899


Q ss_pred             EEEEeccCChhh---hccccHHHHhccCCCcEEEEeC
Q 042102          202 ILVVACSLTEET---QHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       202 vV~~~lp~~~~t---~~li~~~~l~~mk~gavlVN~~  235 (317)
                      +|+.+.|.....   ..++.  .+..++++.+++++.
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV  127 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC
T ss_pred             eeccccCCccccccchhhhh--HHHhhhcchhhHHhh
Confidence            999998864321   11111  134466666666664

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.25  E-value=0.00048  Score=54.90  Aligned_cols=90  Identities=17%  Similarity=0.196  Sum_probs=60.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------C----ccccCCHHHhcccCCEEEEecc
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------N----YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      +.+||+|||.|.+|+.+|..++..+. ++..+|..+....             .    .....+.++.++.||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            45799999999999999988877675 8888987654311             0    0112456788999999999874


Q ss_pred             CCh--------hhhc-cc--c-------HHHHhccCCCcEEEEeCC
Q 042102          209 LTE--------ETQH-IV--N-------RQVINALGPKGVLINIGR  236 (317)
Q Consensus       209 ~~~--------~t~~-li--~-------~~~l~~mk~gavlVN~~r  236 (317)
                      ...        .++. ++  |       .+.+....|.+++++++.
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN  131 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  131 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            311        1221 11  1       122444578999999864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00018  Score=50.77  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=32.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      |||||+|.|..|+.++...+.+|.++.++++..+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            69999999999999999999999999999987654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00039  Score=55.58  Aligned_cols=102  Identities=24%  Similarity=0.280  Sum_probs=64.4

Q ss_pred             CeEEEEecChhHHH-HHHHHhhC-CCEE-EEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAF-DCII-GYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V-~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      .+|||||+|.+|+. ....++.. ++++ .++|++.+..      .+.....++++++++.|+|++++|......  +-.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~--~~~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD--VVS   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH--HHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccc--ccc
Confidence            47999999999986 46667655 6776 4778876543      123456788999999999999999654322  222


Q ss_pred             HHHhccCCC-cEEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102          220 QVINALGPK-GVLINI-GRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       220 ~~l~~mk~g-avlVN~-~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ..   ++.| .+++.- ---.+-+.+.|.++.++.++.
T Consensus        80 ~a---l~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 TL---LNAGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             HH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cc---ccccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence            22   3334 455442 112234555666666666554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.16  E-value=0.00019  Score=55.39  Aligned_cols=82  Identities=15%  Similarity=0.185  Sum_probs=56.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccc----cC---CHHHh-cccCCEEEEeccCChhhh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKY----YP---NLIDL-ASNCQILVVACSLTEETQ  214 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~----~~---~l~el-~~~aDvV~~~lp~~~~t~  214 (317)
                      ++|.|+|+|.+|+.+++.|...|..|.+.|.+++..      .+...    ..   .++++ ++++|.++.+.+..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            589999999999999999999999999998765421      11111    11   23444 6889988887776543  


Q ss_pred             ccccHHHHhccCCCcEEE
Q 042102          215 HIVNRQVINALGPKGVLI  232 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlV  232 (317)
                      +++-....+.+.+..+++
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            334444555666665554

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.13  E-value=0.00068  Score=51.40  Aligned_cols=100  Identities=13%  Similarity=0.198  Sum_probs=73.5

Q ss_pred             CeEEEEec----ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102          149 KSVGILGM----GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA  224 (317)
Q Consensus       149 ~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~  224 (317)
                      |+|+|||.    |..|..+.+.|+..|++|+..++..+.-.+...+.++.++-..-|++++++|... +..++. +.. .
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~~~-~~~~l~-~~~-~   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKV-GLQVAK-EAV-E   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCHHH-HHHHHH-HHH-H
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCHHH-HHHHHH-HHH-h
Confidence            68999995    6789999999999999999888876665677778899999999999999988433 333443 222 3


Q ss_pred             cCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          225 LGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       225 mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      +...++++..+   . ..+.+.+.+++..+.
T Consensus        79 ~g~k~v~~~~g---~-~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          79 AGFKKLWFQPG---A-ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             TTCCEEEECTT---S-CCHHHHHHHHHHTCE
T ss_pred             cCCceEEeccc---h-hhHHHHHHHHHcCCE
Confidence            44556776543   2 345677777777675

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.11  E-value=0.0003  Score=55.73  Aligned_cols=95  Identities=18%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC---------------CCccccCCHHHhcccCCEEEEecc
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN---------------LNYKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~---------------~~~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      -.+++|+|||.|.+|..+|..+...|.  ++..+|..+...               .......+-.+.++.||+|+++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            357899999999999999999987665  799999765321               011112233477899999998754


Q ss_pred             CChh---hh-ccc--c-------HHHHhccCCCcEEEEeCCCcccCH
Q 042102          209 LTEE---TQ-HIV--N-------RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       209 ~~~~---t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      ....   ++ .++  |       .+.+....|.+++++++  .++|.
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt--NPvd~  128 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT--NPVDI  128 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS--SSHHH
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec--CccHH
Confidence            3221   11 111  1       12334456889999984  34543

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.10  E-value=0.0011  Score=56.71  Aligned_cols=102  Identities=8%  Similarity=0.009  Sum_probs=72.8

Q ss_pred             CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 042102          186 NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHE  265 (317)
Q Consensus       186 ~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~E  265 (317)
                      +.....+..|++++||+|++++|..+.+..++ ++..+.+++|++++|++.........+.+.+.+..+.  .++....-
T Consensus       128 Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~--vi~~hp~a  204 (242)
T d2b0ja2         128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN--ITSYHPGC  204 (242)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE--EEECBCSS
T ss_pred             CCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE--EECCCccC
Confidence            34456889999999999999999887778777 6788899999999999998888888888888887776  33433211


Q ss_pred             CCCCcccCCCCceEEcccCCCccHHHHHHHHH
Q 042102          266 PDVPEELIGLENVVLLPHVASATVETRKAMAD  297 (317)
Q Consensus       266 P~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~  297 (317)
                      +    |-..-..+++.   ++.+.|..++..+
T Consensus       205 ~----pe~~g~~li~~---~~aseE~iekv~e  229 (242)
T d2b0ja2         205 V----PEMKGQVYIAE---GYASEEAVNKLYE  229 (242)
T ss_dssp             C----TTTCCCEEEEE---SSSCHHHHHHHHH
T ss_pred             c----CccccceEEec---CCCCHHHHHHHHH
Confidence            1    11122334443   3567776666544

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.08  E-value=0.00067  Score=53.17  Aligned_cols=92  Identities=16%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC---------------Ccc-ccCCHHHhcccCCEEEEecc--
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL---------------NYK-YYPNLIDLASNCQILVVACS--  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~~~-~~~~l~el~~~aDvV~~~lp--  208 (317)
                      +||+|||.|.+|+.+|..+...|.  ++..+|..+....               ... ...+..+.++.||+|+++.-  
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            589999999999999999988775  8999997764310               010 12244567899999999853  


Q ss_pred             CChh-hhc-cc--c-------HHHHhccCCCcEEEEeCCCcccCH
Q 042102          209 LTEE-TQH-IV--N-------RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       209 ~~~~-t~~-li--~-------~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      ..+. ++. ++  |       .+.+....|++++++++.  ++|.
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN--Pvd~  123 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDI  123 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC--ChHH
Confidence            2221 111 11  1       123344568999999854  4543

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.0016  Score=55.36  Aligned_cols=105  Identities=13%  Similarity=0.103  Sum_probs=74.3

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHh-hCCCEEEEeCCCCC------CC---------------CCc--cccCCHHHhcc
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRTEK------PN---------------LNY--KYYPNLIDLAS  198 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~------~~---------------~~~--~~~~~l~el~~  198 (317)
                      +.++.|++|.|=|+|++|+.+|+.|. .+|++|++.+.+..      ..               ...  ....+.++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            34689999999999999999999994 68999886653211      00               000  01224566665


Q ss_pred             -cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          199 -NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       199 -~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                       .||+++-|.     ..+.|+++..+.++- .+++-.+-+.+- .++ .+.|.+..|.
T Consensus       106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~  155 (234)
T d1b26a1         106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGIL  155 (234)
T ss_dssp             SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeE
Confidence             899987772     467899999999985 467777788864 344 4778888786

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.00  E-value=0.0005  Score=54.34  Aligned_cols=88  Identities=17%  Similarity=0.242  Sum_probs=56.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------------Cc--cccCCHHHhcccCCEEEEeccCCh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------------NY--KYYPNLIDLASNCQILVVACSLTE  211 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~~--~~~~~l~el~~~aDvV~~~lp~~~  211 (317)
                      |||+|||.|.+|..+|-.+...|+  ++..+|.......             ..  ....+-.+.++.||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            799999999999999998887664  7888997654210             00  011122456899999999855321


Q ss_pred             -------hhhc-cc--c-------HHHHhccCCCcEEEEeCC
Q 042102          212 -------ETQH-IV--N-------RQVINALGPKGVLINIGR  236 (317)
Q Consensus       212 -------~t~~-li--~-------~~~l~~mk~gavlVN~~r  236 (317)
                             .++. ++  |       .+.+....|++++|+++.
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence                   1111 11  1       123345578999999854

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.99  E-value=0.00044  Score=56.83  Aligned_cols=41  Identities=17%  Similarity=0.144  Sum_probs=37.0

Q ss_pred             ccccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          142 MTTKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       142 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .+.+|+||++.|.| -|.||+.+|+.|...|++|+..+|+.+
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            35689999999999 699999999999999999999998754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.98  E-value=0.0011  Score=51.98  Aligned_cols=88  Identities=18%  Similarity=0.292  Sum_probs=54.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------C-------ccccCCHHHhcccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------N-------YKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------~-------~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      +||+|||.|.+|..+|-.+...|.  ++..+|.......       .       ......-.+.++.||+|+++......
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            489999999999999998887665  7999997664321       0       01122334668999999998443221


Q ss_pred             ---hh-ccc--c-------HHHHhccCCCcEEEEeCC
Q 042102          213 ---TQ-HIV--N-------RQVINALGPKGVLINIGR  236 (317)
Q Consensus       213 ---t~-~li--~-------~~~l~~mk~gavlVN~~r  236 (317)
                         ++ .++  |       .+.+....|++++++++.
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence               11 111  1       122444578899999865

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.97  E-value=0.0011  Score=52.19  Aligned_cols=90  Identities=11%  Similarity=0.156  Sum_probs=57.0

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCC-------------CC--ccccCCHHHhcccCCEEEEecc
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPN-------------LN--YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~-------------~~--~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      ...+||+|||.|.+|..+|..|...|  -++..+|+.++..             ..  .....+.+ .++.||+|+++..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag   81 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAG   81 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEecc
Confidence            35679999999999999999998766  4899999765321             00  01123444 4689999999754


Q ss_pred             CChh---hh--------cccc--HHHHhccCCCcEEEEeCC
Q 042102          209 LTEE---TQ--------HIVN--RQVINALGPKGVLINIGR  236 (317)
Q Consensus       209 ~~~~---t~--------~li~--~~~l~~mk~gavlVN~~r  236 (317)
                      ....   ++        .++.  .+.+..-.|.+++++++.
T Consensus        82 ~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          82 APQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            2111   11        1110  123445578899999874

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00075  Score=53.14  Aligned_cols=40  Identities=15%  Similarity=0.326  Sum_probs=36.3

Q ss_pred             ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCC
Q 042102          140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSR  179 (317)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~  179 (317)
                      .++..++.||++.|||.|.+|..-++.|..+|++|.++++
T Consensus         5 lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1           5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             EEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             chhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            4566789999999999999999999999999999998865

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.89  E-value=0.00054  Score=61.63  Aligned_cols=85  Identities=12%  Similarity=0.127  Sum_probs=64.2

Q ss_pred             CCeEEEEecChhHHHHHHHH-hhCCC-EEEEeCCCCCCC----------CC--ccccCCHHHhcccCCEEEEeccCChhh
Q 042102          148 GKSVGILGMGRIGTAIAKRA-EAFDC-IIGYNSRTEKPN----------LN--YKYYPNLIDLASNCQILVVACSLTEET  213 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l-~~~G~-~V~~~~~~~~~~----------~~--~~~~~~l~el~~~aDvV~~~lp~~~~t  213 (317)
                      -++++|||.|..++.-++.+ .-++. +|.+|+|++...          .+  .....+++++++.||+|+++++. +++
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas-~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD-KAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC-SSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc-CCC
Confidence            35899999999999887766 45776 799999976431          12  22467899999999999988763 344


Q ss_pred             hccccHHHHhccCCCcEEEEeCC
Q 042102          214 QHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       214 ~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ..+|..+   .+|||+.+..+|.
T Consensus       207 ~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         207 ATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEECGG---GCCTTCEEEECSC
T ss_pred             Ccccchh---hcCCCCEEeeccc
Confidence            5677764   4699999988875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.00022  Score=57.90  Aligned_cols=67  Identities=15%  Similarity=-0.034  Sum_probs=46.8

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC----------ccccCCHHHhcccCCEEEEeccCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN----------YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ..+.|++|.|+|.|..+++++..|...+.+|.+++|+.++...          .......+..+.++|+|+.+.|..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence            3578999999999999999999998877799999998643210          001111112356778888887754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.86  E-value=0.0006  Score=55.32  Aligned_cols=107  Identities=15%  Similarity=0.071  Sum_probs=67.3

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC---------------ccccCCHHHhcccCCEEEEecc
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN---------------YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .+++||+|.|+|.|..+++++..|...| +|.+++|+.++...               .....++...+..+|+++.+.|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            4589999999999999999999998877 89999998654210               0123455666788999999988


Q ss_pred             CChhhh-ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCC
Q 042102          209 LTEETQ-HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGR  253 (317)
Q Consensus       209 ~~~~t~-~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~  253 (317)
                      ...... ..-..-.+..++++.+++++.-....  ..|.+..++..
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~--T~l~~~a~~~G  136 (177)
T d1nvta1          93 IGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE--TVLLKEAKKVN  136 (177)
T ss_dssp             TTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS--CHHHHHHHTTT
T ss_pred             ccccccccccchhhhhccCcccceeeecCCcHh--HHHHHHHHHCC
Confidence            643211 10001123345666676666443322  24444444443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.86  E-value=0.00097  Score=53.25  Aligned_cols=36  Identities=25%  Similarity=0.468  Sum_probs=32.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|.+|.|+|.|.||...++.++.+|++|++.++++.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            467999999999999999999999999999988754

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.81  E-value=0.0031  Score=53.67  Aligned_cols=103  Identities=15%  Similarity=0.236  Sum_probs=71.3

Q ss_pred             cccCCeEEEEecChhHHHHHHHHh-hCCCEEEEeCCCCCC---------------------CCCc--cccCCHHHhc-cc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRTEKP---------------------NLNY--KYYPNLIDLA-SN  199 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~---------------------~~~~--~~~~~l~el~-~~  199 (317)
                      .|.|+||.|-|+|++|+.+|+.|. .+|++|+..+.+...                     ...+  ....+.++++ ..
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            489999999999999999999885 689998765432210                     0000  0112345543 57


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      ||+++-|.-     .+.|+++..+.++- .+++-.+-+++.. ++ .+.|.++.|.
T Consensus       109 ~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI~  156 (239)
T d1gtma1         109 VDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGIL  156 (239)
T ss_dssp             CSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence            999888744     57788888888864 5667778888754 44 4777777776

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0019  Score=51.59  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCcc-----ccCCHHHhc--------ccCCEEEEec
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYK-----YYPNLIDLA--------SNCQILVVAC  207 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~-----~~~~l~el~--------~~aDvV~~~l  207 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++.     ...+..+..        ...|+++-+.
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            46799999999999999999999999 799988776432     1211     112333221        2478877776


Q ss_pred             cCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          208 SLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       208 p~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ... .+    -+..++.+++|..++.+|-
T Consensus       106 G~~-~~----~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2         106 GAE-AS----IQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CCH-HH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCc-hh----HHHHHHHhcCCCEEEEEec
Confidence            632 22    2456777888888887764

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.78  E-value=0.0013  Score=52.48  Aligned_cols=85  Identities=21%  Similarity=0.296  Sum_probs=56.2

Q ss_pred             CeEEEEecChhHHH-HHHHHhhCCC-EEE-EeCCCCCCC-------CCcc-ccCCHHHh-----cccCCEEEEeccCChh
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAFDC-IIG-YNSRTEKPN-------LNYK-YYPNLIDL-----ASNCQILVVACSLTEE  212 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~G~-~V~-~~~~~~~~~-------~~~~-~~~~l~el-----~~~aDvV~~~lp~~~~  212 (317)
                      .++||||.|.||+. +.+.++.+.. ++. +.+++....       .+.. ...+++++     +.+.|+|+.++|....
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            58999999999986 6678877654 554 557665421       1222 22334444     3468999999885544


Q ss_pred             hhccccHHHHhccCCCcEEEEeCC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ..   .+..++..+.|.++|+-+.
T Consensus        85 ~~---~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQ---NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HH---HHHHHHHHCTTCEEEECST
T ss_pred             HH---hHHHHHHHHcCCEEEEccc
Confidence            33   2445667899999999875

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.77  E-value=0.00085  Score=52.51  Aligned_cols=88  Identities=18%  Similarity=0.301  Sum_probs=56.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCCC--------------CccccCCHHHhcccCCEEEEeccC--C
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPNL--------------NYKYYPNLIDLASNCQILVVACSL--T  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDvV~~~lp~--~  210 (317)
                      +||+|||.|.+|..+|..+...+  -++..+|..++...              ......+..+.++.||+|+++...  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            58999999999999998887555  48999997653210              011122335568999999998532  1


Q ss_pred             h-hhh-ccc--c-------HHHHhccCCCcEEEEeCC
Q 042102          211 E-ETQ-HIV--N-------RQVINALGPKGVLINIGR  236 (317)
Q Consensus       211 ~-~t~-~li--~-------~~~l~~mk~gavlVN~~r  236 (317)
                      + .++ .++  |       .+.+....|++++++++.
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            1 111 111  1       123445678999999864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.74  E-value=0.002  Score=50.96  Aligned_cols=89  Identities=15%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC-------------c---cccCCHHHhcccCCEEEEeccCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN-------------Y---KYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-------------~---~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ..||+|||.|.+|+.+|..+...+. ++..+|..++...+             .   ....+..+.++.||+|+++....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            4689999999999999988876665 78899976643210             0   01123457789999999986532


Q ss_pred             hh---h-----h-ccc--cH----H---HHhccCCCcEEEEeCC
Q 042102          211 EE---T-----Q-HIV--NR----Q---VINALGPKGVLINIGR  236 (317)
Q Consensus       211 ~~---t-----~-~li--~~----~---~l~~mk~gavlVN~~r  236 (317)
                      ..   +     + .++  |.    +   .+....|++++++++.
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN  126 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN  126 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            21   1     1 111  21    1   2344568999999865

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00096  Score=54.92  Aligned_cols=64  Identities=13%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc-------ccCCHHHhcccCCEEEEeccCC
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK-------YYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ..|+|.|+| .|.||+.+++.|...|++|.++.|++.+..     +..       ...++.++++.+|+|+.++...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence            357999999 699999999999999999999887654321     111       1234677899999999887643

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.69  E-value=0.00048  Score=55.13  Aligned_cols=34  Identities=32%  Similarity=0.479  Sum_probs=31.4

Q ss_pred             CeEEEE-ecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          149 KSVGIL-GMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       149 ~~vgIi-G~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +||+|+ |.|.||+.+|++|...|++|.+++|+++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999 7899999999999999999999998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0007  Score=54.22  Aligned_cols=37  Identities=30%  Similarity=0.441  Sum_probs=32.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+++.++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~   66 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK   66 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhH
Confidence            4789999999999999999999999998888766543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.00095  Score=54.09  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~  182 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccc
Confidence            58899999999999999999999998 7999887654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.64  E-value=0.0013  Score=58.59  Aligned_cols=83  Identities=18%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             CeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCC---------CCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPN---------LNYKYYPNLIDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~---------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      +++||||.|..++.-++.+. .+.. +|.+|+|+.+..         .......+.++.+..||+|+++.|.   +..+|
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P~~  202 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKPVV  202 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSCCB
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---ccccc
Confidence            58999999999999888776 4666 799999886432         1222344667888999999998764   45677


Q ss_pred             cHHHHhccCCCcEEEEeCCC
Q 042102          218 NRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       218 ~~~~l~~mk~gavlVN~~rg  237 (317)
                      ..+   .+|||+.+..+|..
T Consensus       203 ~~~---~l~~G~hv~~iGs~  219 (320)
T d1omoa_         203 KAE---WVEEGTHINAIGAD  219 (320)
T ss_dssp             CGG---GCCTTCEEEECSCC
T ss_pred             chh---hcCCCCeEeecCCc
Confidence            654   47999999999753

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.61  E-value=0.0019  Score=50.02  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=63.2

Q ss_pred             cccCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CCccccCCHHHhcc
Q 042102          145 KFTGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LNYKYYPNLIDLAS  198 (317)
Q Consensus       145 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~~~~~~~l~el~~  198 (317)
                      .+.+++|||+|+          +.-...+++.|...|++|.+||+.....                .......+++++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            467889999998          5678889999999999999999742110                01123578999999


Q ss_pred             cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102          199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINI  234 (317)
Q Consensus       199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~  234 (317)
                      .+|+|+++.+..+     + .+....++++.+++++
T Consensus        90 ~~D~ivi~t~h~~-----f-~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          90 SSDVLVLGNGDEL-----F-VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HCSEEEECSCCGG-----G-HHHHHSCCTTCEEEES
T ss_pred             hceEEEEEeCCHH-----H-HHHHHHhcCCCEEEEC
Confidence            9999999988542     1 2345567788899997

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.55  E-value=0.00096  Score=57.55  Aligned_cols=106  Identities=15%  Similarity=0.155  Sum_probs=68.3

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC-----CCCCc------------------c--------ccCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK-----PNLNY------------------K--------YYPN  192 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~-----~~~~~------------------~--------~~~~  192 (317)
                      .++.|+||.|=|+|++|+.+|+.|...|++|+..+.+..     .....                  .        ...+
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP  111 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeec
Confidence            468999999999999999999999999999875432210     00000                  0        0001


Q ss_pred             HHH-hcccCCEEEEeccCChhhhccccHHHHhccCC-Cc-EEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          193 LID-LASNCQILVVACSLTEETQHIVNRQVINALGP-KG-VLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       193 l~e-l~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~-ga-vlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      .++ +-..||+++-|     ++.+.|+.+..+.++. |+ +++--+.+++-++ +....|+++.|.
T Consensus       112 ~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~  171 (255)
T d1bgva1         112 GEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMV  171 (255)
T ss_dssp             TCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCE
T ss_pred             hhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCE
Confidence            112 23469987755     3567788888887763 44 5666666665554 444456766675

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.53  E-value=0.009  Score=47.51  Aligned_cols=91  Identities=10%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------CccccCCHHHhcccCCEEEEec
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------NYKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~el~~~aDvV~~~l  207 (317)
                      +|.|+||++||=| ++.++.+..+..||+++....+..-...                ......++++.++.+|+|..-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            4789999999975 4668888999999999998876432111                1223568999999999888642


Q ss_pred             cCC-------hh-----hhccccHHHHhccCCCcEEEEeC
Q 042102          208 SLT-------EE-----TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       208 p~~-------~~-----t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      =..       +.     ....++.+.++.+|++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            111       10     12356889999999999998885

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.51  E-value=0.005  Score=47.93  Aligned_cols=102  Identities=17%  Similarity=0.155  Sum_probs=73.2

Q ss_pred             cCCeEEEEecC----hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          147 TGKSVGILGMG----RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       147 ~g~~vgIiG~G----~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      .-++|+|||..    ..|..+++.|+.+|++|+..++....-.+...+.++.++-..-|++++++|... +..++. +..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~~~-~~~~~~-e~~   95 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKL-TMEYVE-QAI   95 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHH-HHHHHH-HHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeCHHH-HHHHHH-HHH
Confidence            46899999964    799999999999999999998876665677778899999999999999998432 333333 222


Q ss_pred             hccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                       .+....+++..|   ..+++ +.+.+++..+.
T Consensus        96 -~~g~k~v~~~~G---~~~ee-~~~~a~~~gi~  123 (139)
T d2d59a1          96 -KKGAKVVWFQYN---TYNRE-ASKKADEAGLI  123 (139)
T ss_dssp             -HHTCSEEEECTT---CCCHH-HHHHHHHTTCE
T ss_pred             -HhCCCEEEEecc---ccCHH-HHHHHHHCCCE
Confidence             345567777654   24554 44555555554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.51  E-value=0.0011  Score=52.84  Aligned_cols=102  Identities=8%  Similarity=0.092  Sum_probs=62.8

Q ss_pred             CeEEEEecChhHHH-HHHHHhhC-CCEEEEeCCCCCCC------CC-ccccCCHHHhcc-cCCEEEEeccCChhhhcccc
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAF-DCIIGYNSRTEKPN------LN-YKYYPNLIDLAS-NCQILVVACSLTEETQHIVN  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~~~~~~~~~~------~~-~~~~~~l~el~~-~aDvV~~~lp~~~~t~~li~  218 (317)
                      .+|||||+|.+|+. ....++.. ++++.++++++...      .+ ...+.+.+++++ +.|+|+++.|......  +-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~--~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST--LA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH--HH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccc--cc
Confidence            48999999999976 56677666 56777888765332      11 123556777765 5799999998654433  22


Q ss_pred             HHHHhccCCC-cEEEEeC-CCcccCHHHHHHHHHhCCce
Q 042102          219 RQVINALGPK-GVLINIG-RGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       219 ~~~l~~mk~g-avlVN~~-rg~~vd~~aL~~al~~g~i~  255 (317)
                      ...++   .| .+++.-= --.+-+.+.|.++.++.++.
T Consensus        80 ~~al~---~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFLH---LGIPTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHH---TTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ccccc---cccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            33333   33 3555421 12234556778877766654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.48  E-value=0.0012  Score=53.57  Aligned_cols=102  Identities=14%  Similarity=0.114  Sum_probs=65.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC----------CCccccCCHHHhcc--cCCEEEEeccCChhhh
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN----------LNYKYYPNLIDLAS--NCQILVVACSLTEETQ  214 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~----------~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~  214 (317)
                      .++||||+|.+|+..++.++.. +++|. ++|++....          .....+.+++++++  +.|+|+++.|......
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            4799999999999999999876 67765 567764321          11234578999874  5789999988654332


Q ss_pred             ccccHHHHhccCCCcEEEEeCC--CcccCHHHHHHHHHhCCce
Q 042102          215 HIVNRQVINALGPKGVLINIGR--GLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~r--g~~vd~~aL~~al~~g~i~  255 (317)
                           -....++.|.-++----  -.+-+.+.|.+..++.++.
T Consensus        82 -----~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          82 -----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             -----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             -----hhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence                 23334555543332111  1223455778888887776

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.47  E-value=0.0039  Score=48.64  Aligned_cols=87  Identities=21%  Similarity=0.271  Sum_probs=54.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------C----ccccCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------N----YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      +||+|||.|.+|..+|-.+...+. ++..+|..+....             .    .....+. +.++.||+|+++....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEEeeecc
Confidence            589999999999999988876665 8888887654310             0    0112233 4578999999987432


Q ss_pred             --hh-hh-ccc--cH-------HHHhccCCCcEEEEeCC
Q 042102          211 --EE-TQ-HIV--NR-------QVINALGPKGVLINIGR  236 (317)
Q Consensus       211 --~~-t~-~li--~~-------~~l~~mk~gavlVN~~r  236 (317)
                        +. ++ .++  |.       ..+....|.+++++++.
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence              11 11 111  11       12334467899998754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.46  E-value=0.0018  Score=51.80  Aligned_cols=93  Identities=18%  Similarity=0.248  Sum_probs=60.5

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------------C-c-cccCCHHHhcccCCEEEEe
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------------N-Y-KYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~-~-~~~~~l~el~~~aDvV~~~  206 (317)
                      ..+..++|+|||.|.+|+.+|-.+...|.  ++..+|..++...             . . .....-.+.++.||+|+++
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVit   95 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVT   95 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEEC
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEe
Confidence            34667899999999999999999998886  7999997643210             0 0 0112335678999999987


Q ss_pred             ccCC--h-hhhc-cc--c-------HHHHhccCCCcEEEEeCC
Q 042102          207 CSLT--E-ETQH-IV--N-------RQVINALGPKGVLINIGR  236 (317)
Q Consensus       207 lp~~--~-~t~~-li--~-------~~~l~~mk~gavlVN~~r  236 (317)
                      ....  + +++- ++  |       ...+....+++++|+++.
T Consensus        96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            5432  1 1221 11  1       122334578899999864

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.39  E-value=0.0098  Score=46.75  Aligned_cols=90  Identities=16%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             ccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCC-CCCCC---------CCccccCCHHHhcccCCEEEEeccCCh-
Q 042102          146 FTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSR-TEKPN---------LNYKYYPNLIDLASNCQILVVACSLTE-  211 (317)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~-~~~~~---------~~~~~~~~l~el~~~aDvV~~~lp~~~-  211 (317)
                      |.|++|++||=   |++.++.+..+..||+++.++.+ ...+.         .......++++.++.+|+|...--... 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999997   45899999999999998654433 21111         123345689999999998875421110 


Q ss_pred             ----------hhhccccHHHHhccCCCcEEEEeC
Q 042102          212 ----------ETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       212 ----------~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                                .....++.+.++.++++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                      012246788888899999988876

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.38  E-value=0.0065  Score=47.00  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=72.1

Q ss_pred             cCCeEEEEec----ChhHHHHHHHHhhCCCEEEEeCCCCCC--CCCccccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102          147 TGKSVGILGM----GRIGTAIAKRAEAFDCIIGYNSRTEKP--NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQ  220 (317)
Q Consensus       147 ~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~--~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~  220 (317)
                      .-|+|+|||.    +..|..+.+.|+..|+++..+.+++..  -.+...+.++.++-...|++++++|. +.+..++.+ 
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p~-~~v~~~v~~-   89 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLPE-   89 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHHH-
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEeccH-HHHHHHHHH-
Confidence            5679999997    789999999999999999888775432  24555678899998889999999983 334445533 


Q ss_pred             HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102          221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~  255 (317)
                      . ..+..+++++..|   ..+++ +.+..++..+.
T Consensus        90 ~-~~~g~k~i~~q~G---~~~~e-~~~~a~~~Gi~  119 (136)
T d1iuka_          90 V-LALRPGLVWLQSG---IRHPE-FEKALKEAGIP  119 (136)
T ss_dssp             H-HHHCCSCEEECTT---CCCHH-HHHHHHHTTCC
T ss_pred             H-HhhCCCeEEEecC---ccCHH-HHHHHHHcCCE
Confidence            2 2345668887654   34554 45555555554

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.35  E-value=0.004  Score=47.83  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=75.1

Q ss_pred             cccCCeEEEEec----ChhHHHHHHHHhhCC-CEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102          145 KFTGKSVGILGM----GRIGTAIAKRAEAFD-CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR  219 (317)
Q Consensus       145 ~l~g~~vgIiG~----G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~  219 (317)
                      -++-++|+|||.    |..|..+.+.|+..| .+|+..++..+.-.+...+.++.|+-...|.+++++|.. .+..++. 
T Consensus         5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp~~-~~~~~~~-   82 (129)
T d2csua1           5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPKR-FVKDTLI-   82 (129)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCHH-HHHHHHH-
T ss_pred             hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecChH-HhHHHHH-
Confidence            467789999997    899999999998766 589999887766667777889999999999999999933 3444553 


Q ss_pred             HHHhccCCCcEEEEeCCCcc-----cCHHHHHHHHHhCCce
Q 042102          220 QVINALGPKGVLINIGRGLL-----VDEHELVSALLQGRLG  255 (317)
Q Consensus       220 ~~l~~mk~gavlVN~~rg~~-----vd~~aL~~al~~g~i~  255 (317)
                      +..+.=-++++++.-+-++.     ..++.|.+..++..++
T Consensus        83 ~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          83 QCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            33322223455554444443     2233555656655554

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.30  E-value=0.004  Score=48.64  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------------Cc----cccCCHHHhcccCCEEEEeccC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------------NY----KYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~~----~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      +||+|||.|.+|..+|-.+...|.  ++..+|..++...             ..    ....+ .+.++.||+|+++...
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~   79 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence            589999999999999999887665  6888987653310             00    01223 4689999999987542


Q ss_pred             --Chh---------hhcccc--HHHHhccCCCcEEEEeCC
Q 042102          210 --TEE---------TQHIVN--RQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 --~~~---------t~~li~--~~~l~~mk~gavlVN~~r  236 (317)
                        .+.         +..++.  .+.+....|.+++++++.
T Consensus        80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence              221         111110  123444567899999876

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.29  E-value=0.0013  Score=52.39  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=32.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            477999999999999999999999999999987654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.20  E-value=0.002  Score=51.06  Aligned_cols=84  Identities=17%  Similarity=0.252  Sum_probs=53.4

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-----cCC----HHHhcccCCEEEEeccCChh
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-----YPN----LIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~~----l~el~~~aDvV~~~lp~~~~  212 (317)
                      .|.+|.|.|.|.||...++.++..|.+|++.++++++.     .++..     ..+    +.+.....|.++.+.. .++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence            57899999999999999999999999999988765432     11110     112    2223344454544433 232


Q ss_pred             hhccccHHHHhccCCCcEEEEeC
Q 042102          213 TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      +-    ...+..++++..++.++
T Consensus       106 ~~----~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2         106 AF----QSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HH----HHHHHHEEEEEEEEECC
T ss_pred             HH----HHHHHHhccCCceEecc
Confidence            21    45566677777777764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.13  E-value=0.0014  Score=52.65  Aligned_cols=61  Identities=21%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------CccccCCHHHhcccCCEEEEeccC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------NYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      .+++|.|+|.|..|++++..|+..|+ +|.+++|+.++..      +.......  -..++|+|+.+.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~--~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL--ENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC--TTCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc--cccchhhheecccc
Confidence            57899999999999999999999998 7999999865321      11111111  13567888888774

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.12  E-value=0.0019  Score=52.16  Aligned_cols=36  Identities=22%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~  182 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            47799999999999999999999998 6899988654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.08  E-value=0.0057  Score=49.61  Aligned_cols=61  Identities=18%  Similarity=0.144  Sum_probs=41.0

Q ss_pred             eEEEEecChhHHHHHHHHhhC-CCEEEEe-CCCCCCCC-----------------------CccccCCHHHhcccCCEEE
Q 042102          150 SVGILGMGRIGTAIAKRAEAF-DCIIGYN-SRTEKPNL-----------------------NYKYYPNLIDLASNCQILV  204 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~-----------------------~~~~~~~l~el~~~aDvV~  204 (317)
                      +|||.|||+||+.+++.+... +++|.+. |+.+....                       +.....++.++++++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999765 4677654 44432110                       0011235667777888888


Q ss_pred             EeccCC
Q 042102          205 VACSLT  210 (317)
Q Consensus       205 ~~lp~~  210 (317)
                      -|.|..
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            887754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0085  Score=47.76  Aligned_cols=35  Identities=34%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|.+|.|.|. |.+|....+.++.+|++|++..+++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            5789999995 9999999999999999998877654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0055  Score=48.79  Aligned_cols=90  Identities=12%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC-------------CCc---cccCCHHHhcccCCEEEEec
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-------------LNY---KYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-------------~~~---~~~~~l~el~~~aDvV~~~l  207 (317)
                      +...+|+|||.|.+|..+|..|...|.  ++..+|......             ...   ....+ .+.++.||+|+++.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvita   95 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEECC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEec
Confidence            555699999999999999999988776  798899764321             000   11233 45569999998875


Q ss_pred             cC--Ch-hhhc-cc--cHHH-------HhccCCCcEEEEeCC
Q 042102          208 SL--TE-ETQH-IV--NRQV-------INALGPKGVLINIGR  236 (317)
Q Consensus       208 p~--~~-~t~~-li--~~~~-------l~~mk~gavlVN~~r  236 (317)
                      ..  .+ +++. ++  |.+.       +....|++++++++.
T Consensus        96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            33  21 1221 12  1111       334578999999865

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.021  Score=45.06  Aligned_cols=96  Identities=11%  Similarity=0.121  Sum_probs=64.4

Q ss_pred             ccCCeEEEEec--ChhHHHHHHHHhhCCCEEEEeCCCCC-CC---------------CCccccCCHHHhcccCCEEEEec
Q 042102          146 FTGKSVGILGM--GRIGTAIAKRAEAFDCIIGYNSRTEK-PN---------------LNYKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       146 l~g~~vgIiG~--G~iG~~~a~~l~~~G~~V~~~~~~~~-~~---------------~~~~~~~~l~el~~~aDvV~~~l  207 (317)
                      |.|++|++||=  .++-++.+..+..||+++....+..- +.               .......++++.++.+|+|..-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            57999999993  57999999999999999988876421 11               01223568999999999998754


Q ss_pred             cCChh------------hhc-cccHHHHhccCCCcEEEEeC---CCcccC
Q 042102          208 SLTEE------------TQH-IVNRQVINALGPKGVLINIG---RGLLVD  241 (317)
Q Consensus       208 p~~~~------------t~~-li~~~~l~~mk~gavlVN~~---rg~~vd  241 (317)
                      -....            ... ..+......+|++++|.-+.   ||.=|+
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis  130 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVT  130 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBC
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccc
Confidence            32110            111 22333444578899998875   454444

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.81  E-value=0.0039  Score=49.69  Aligned_cols=61  Identities=8%  Similarity=0.045  Sum_probs=41.1

Q ss_pred             CeEEEEecChhHHHHHHH--H---hhCC-CEEEEeCCCCCCCC--------------CccccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILGMGRIGTAIAKR--A---EAFD-CIIGYNSRTEKPNL--------------NYKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~--l---~~~G-~~V~~~~~~~~~~~--------------~~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      +||.|||.|.+|...+-.  +   ..+. -++..+|..+.+..              ......+.++.++.||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            589999999988666532  2   2222 47888997654310              11124678899999999999865


Q ss_pred             C
Q 042102          209 L  209 (317)
Q Consensus       209 ~  209 (317)
                      .
T Consensus        81 ~   81 (162)
T d1up7a1          81 P   81 (162)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.73  E-value=0.0045  Score=48.39  Aligned_cols=91  Identities=13%  Similarity=0.224  Sum_probs=57.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------------C---ccccCCHHHhcccCCEEEEeccCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------------N---YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~---~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      .||+|||.|.+|..+|-.+...|.  ++..+|..+....             .   .....+ .+.++.||+|+++.-..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~-~~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCC-HHHhhCCcEEEEecccc
Confidence            489999999999999998886665  7889997653210             0   001233 35688999999975431


Q ss_pred             --h-hhh-ccc--c-------HHHHhccCCCcEEEEeCCCcccCH
Q 042102          211 --E-ETQ-HIV--N-------RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       211 --~-~t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                        + +++ .++  |       ...+....|++++++++  ..+|.
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt--NPvDv  123 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT--NPVDI  123 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC--CchHH
Confidence              1 111 111  1       12344557889999886  44553

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.73  E-value=0.0036  Score=50.15  Aligned_cols=82  Identities=20%  Similarity=0.253  Sum_probs=50.7

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc---cCCH-HH--hcccCCEEEEeccCChhhh
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY---YPNL-ID--LASNCQILVVACSLTEETQ  214 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~---~~~l-~e--l~~~aDvV~~~lp~~~~t~  214 (317)
                      .|.+|.|.|. |.+|+..++.++.+|++|++.++++++.     .++..   +.+. ++  ....+|+|+-+..  + + 
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~-~-  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--K-E-  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--T-T-
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--h-h-
Confidence            5789999995 9999999999999999998887665432     11111   1111 11  1234666665432  1 1 


Q ss_pred             ccccHHHHhccCCCcEEEEeC
Q 042102          215 HIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~  235 (317)
                        + ...++.++++..+|.+|
T Consensus       103 --~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC-
T ss_pred             --H-HHHHHHHhcCCcEEEEe
Confidence              1 34566667777766664

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.70  E-value=0.0049  Score=49.69  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=61.6

Q ss_pred             CeEEEEecChhHHH-HHHHHhhCC--CEEE-EeCCCCCCCC------C-ccccCCHHHhcc--cCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTA-IAKRAEAFD--CIIG-YNSRTEKPNL------N-YKYYPNLIDLAS--NCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~-~a~~l~~~G--~~V~-~~~~~~~~~~------~-~~~~~~l~el~~--~aDvV~~~lp~~~~t~~  215 (317)
                      .++||||+|.+|+. ....++.++  ++|. ++|++.....      + ...+.+++|+++  +.|+|++++|...... 
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~-   82 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP-   82 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH-
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc-
Confidence            47999999999987 477777654  4665 6777653321      1 224578999886  4789999988554322 


Q ss_pred             cccHHHHhccCCC-cEEEEeC-CCcccCHHHHHHHHHhCCce
Q 042102          216 IVNRQVINALGPK-GVLINIG-RGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       216 li~~~~l~~mk~g-avlVN~~-rg~~vd~~aL~~al~~g~i~  255 (317)
                       +-...   ++.| .+++.-= --.+-+...|.+..++.+..
T Consensus        83 -~~~~a---l~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          83 -FIEKA---LRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             -HHHHH---HHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             -ccccc---cccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence             22223   3334 4445431 11233445677777665554

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.022  Score=45.27  Aligned_cols=91  Identities=11%  Similarity=0.108  Sum_probs=65.0

Q ss_pred             cccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCC----------------CCccccCCHHHhcccCCEEEEec
Q 042102          145 KFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPN----------------LNYKYYPNLIDLASNCQILVVAC  207 (317)
Q Consensus       145 ~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~~~~~~~l~el~~~aDvV~~~l  207 (317)
                      +|.|+||++||=|+ +-++++..+..||+++.+..+..-..                .......++++.+..+|+|....
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            37899999999763 55677777788999998877643221                01224578999999999998765


Q ss_pred             cCChh------------hhccccHHHHhccCCCcEEEEeC
Q 042102          208 SLTEE------------TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       208 p~~~~------------t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      -....            ....++.+.++.++++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            43221            12346778888999999998885

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.61  E-value=0.004  Score=48.77  Aligned_cols=92  Identities=18%  Similarity=0.296  Sum_probs=58.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CC---------ccccCCHHHhcccCCEEEEeccC--
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LN---------YKYYPNLIDLASNCQILVVACSL--  209 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~---------~~~~~~l~el~~~aDvV~~~lp~--  209 (317)
                      .||+|||. |.+|+.+|-.+...|.  ++..+|......     ..         .....+..+.++.||+|+++...  
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            38999994 9999999999998776  677787643221     00         01134567889999999987442  


Q ss_pred             Ch-hhhc-cc--c-------HHHHhccCCCcEEEEeCCCcccCH
Q 042102          210 TE-ETQH-IV--N-------RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       210 ~~-~t~~-li--~-------~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                      .+ +++- ++  |       .+.+....|.++++.++.  +||.
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~  122 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNS  122 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhh
Confidence            22 1211 11  1       122334578899999854  5554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.012  Score=45.92  Aligned_cols=92  Identities=15%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHh-h--CCCEEEEeCCCCCCC--------CCcc------ccCCHHHhcccCCEEEEeccC-
Q 042102          149 KSVGILGM-GRIGTAIAKRAE-A--FDCIIGYNSRTEKPN--------LNYK------YYPNLIDLASNCQILVVACSL-  209 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~-~--~G~~V~~~~~~~~~~--------~~~~------~~~~l~el~~~aDvV~~~lp~-  209 (317)
                      ++|+|||. |.+|+.+|-.|+ .  ++-++..+|..+...        ....      ...+..+.++.||+|+++.-. 
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            58999995 999999998764 3  456888888654221        0000      113345678999999997532 


Q ss_pred             -Chh-hh-ccc--c-------HHHHhccCCCcEEEEeCCCcccCH
Q 042102          210 -TEE-TQ-HIV--N-------RQVINALGPKGVLINIGRGLLVDE  242 (317)
Q Consensus       210 -~~~-t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd~  242 (317)
                       .+. ++ .++  |       .+.+....|++++|.++.  ++|.
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~  123 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNT  123 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchH
Confidence             221 11 122  1       233445578899999854  4553

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.58  E-value=0.028  Score=45.50  Aligned_cols=91  Identities=8%  Similarity=0.026  Sum_probs=63.6

Q ss_pred             cccCCeEEEEec--ChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CCccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGM--GRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LNYKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~--G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~~~~~~~l~el~~~aDvV~~~  206 (317)
                      .|.|.||++||=  -++.++.+..+..||+++.+..+..-..                .......++++.++.+|+|..-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            488999999994  4899999999999999999888743111                1122357899999999998764


Q ss_pred             ccCC----hh---------hhccc-cHHHHhccCCCcEEEEeC
Q 042102          207 CSLT----EE---------TQHIV-NRQVINALGPKGVLINIG  235 (317)
Q Consensus       207 lp~~----~~---------t~~li-~~~~l~~mk~gavlVN~~  235 (317)
                      .=.+    ..         ....+ .+.....+|++++|.-+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            3211    10         11123 344455678999998886

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.55  E-value=0.049  Score=45.39  Aligned_cols=144  Identities=18%  Similarity=0.198  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCC-----
Q 042102          108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTE-----  181 (317)
Q Consensus       108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~-----  181 (317)
                      +|=-+++-+|+.+|-.                   ++.|...++.|+|.|..|-.+|+.+...+. +++.+|+..     
T Consensus         5 TaaV~LAgll~a~~~~-------------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~   65 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT-------------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEN   65 (222)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTT
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcC
Confidence            4555677777776544                   346889999999999999999999998887 688888641     


Q ss_pred             CCC--C------------CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHH
Q 042102          182 KPN--L------------NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS  247 (317)
Q Consensus       182 ~~~--~------------~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~  247 (317)
                      ...  .            ......++.+++..++++...-     +.+++.++.+..|.+..++.=.|....--|..  .
T Consensus        66 r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~  138 (222)
T d1vl6a1          66 DPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--L  138 (222)
T ss_dssp             SGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--H
T ss_pred             cccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--h
Confidence            110  0            0112357888999999766553     47888999999999999999998866544433  3


Q ss_pred             HHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCC
Q 042102          248 ALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVA  285 (317)
Q Consensus       248 al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a  285 (317)
                      +-..|+..-+.     ..|..+   -+..|+++-|=++
T Consensus       139 a~~~G~ai~At-----Gsp~~p---~Q~NN~yiFPGig  168 (222)
T d1vl6a1         139 AREAGAFIVAT-----GRSDHP---NQVNNLLAFPGIM  168 (222)
T ss_dssp             HHHTTCSEEEE-----SCTTSS---SBCCGGGTHHHHH
T ss_pred             heeccceEEec-----CCCCCC---ccCcceeecchHH
Confidence            45567765332     223222   3556777777554

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.49  E-value=0.0055  Score=48.90  Aligned_cols=103  Identities=18%  Similarity=0.098  Sum_probs=59.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC----CEEEE-eCCCCCCCCCccccCCHHHhcc--cCCEEEEeccCChhhhccccHHH
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD----CIIGY-NSRTEKPNLNYKYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQV  221 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~-~~~~~~~~~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~~  221 (317)
                      .+|||||+|.+|+..++.++...    ..+.. .++............++++++.  +.|+|++++|......  +-...
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~--~~~~a   85 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSHED--YIRQF   85 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHH--HHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccccccc--ccccc
Confidence            48999999999999888887543    23332 2232222222223457889876  5688999988554322  22333


Q ss_pred             HhccCCCcEEEEeC-CCcccCHHHHHHHHHhCCce
Q 042102          222 INALGPKGVLINIG-RGLLVDEHELVSALLQGRLG  255 (317)
Q Consensus       222 l~~mk~gavlVN~~-rg~~vd~~aL~~al~~g~i~  255 (317)
                      ++.=|  .+++.-= --.+-+.+.|.+..++.+..
T Consensus        86 l~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          86 LQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            33322  3555521 12344666777766665554

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.46  E-value=0.025  Score=45.25  Aligned_cols=37  Identities=14%  Similarity=0.202  Sum_probs=32.6

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  183 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            57899999999999999999999998 67888877644

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.018  Score=44.92  Aligned_cols=102  Identities=18%  Similarity=0.262  Sum_probs=57.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHhh---CC-CEEEEeCCCCCCC--CCcc------ccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEA---FD-CIIGYNSRTEKPN--LNYK------YYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~---~G-~~V~~~~~~~~~~--~~~~------~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      |+|||||. |.+|+.+.++|..   |- .++..+..+....  ....      ....-.+.++.+|++++++|...+-+ 
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~-   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNE-   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHH-
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHH-
Confidence            58999998 9999999986643   22 2555554332211  1111      11112245789999999998554322 


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcc-----------cCHHHHHHHHHhCC
Q 042102          216 IVNRQVINALGPKGVLINIGRGLL-----------VDEHELVSALLQGR  253 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~-----------vd~~aL~~al~~g~  253 (317)
                       +- ..+..-+.+.++|+.|..-=           |+.+.|.+++.+|.
T Consensus        81 -~~-~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          81 -IY-PKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             -HH-HHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             -hh-HHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence             22 22222234467888874322           35556777776543

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=95.43  E-value=0.013  Score=45.97  Aligned_cols=60  Identities=13%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             cCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCCCCCC--CCccccCCHHHhcccCCEEEEe
Q 042102          147 TGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRTEKPN--LNYKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       147 ~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~--~~~~~~~~l~el~~~aDvV~~~  206 (317)
                      .|.+|++||=   +++.++++..+..||+++.+..+..-..  .......++++.++.+|+|...
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeee
Confidence            5899999996   6899999999999999988777643221  2233456889999999988664

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.0097  Score=47.75  Aligned_cols=61  Identities=13%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             CCeEEEEecChhHHHHHH---HHh--hC-CCEEEEeCCCCCCCC-----------------CccccCCHHHhcccCCEEE
Q 042102          148 GKSVGILGMGRIGTAIAK---RAE--AF-DCIIGYNSRTEKPNL-----------------NYKYYPNLIDLASNCQILV  204 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~---~l~--~~-G~~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~aDvV~  204 (317)
                      ++||+|||.|.+|...+-   .++  .+ +-++..+|..++...                 ......+.+|.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            579999999999976432   332  33 348999998754310                 1113468899999999999


Q ss_pred             Eecc
Q 042102          205 VACS  208 (317)
Q Consensus       205 ~~lp  208 (317)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.40  E-value=0.0024  Score=51.27  Aligned_cols=35  Identities=20%  Similarity=0.132  Sum_probs=29.9

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~  181 (317)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.++++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            578999999999999999999999995 45666654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.40  E-value=0.0091  Score=44.73  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .++|.|||.|.+|-++|..|+.+|.+|..+.+....
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            479999999999999999999999999999886644

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.0096  Score=44.90  Aligned_cols=36  Identities=17%  Similarity=0.189  Sum_probs=32.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      +++.|||.|.||-++|..+..+|++|..+.+.+...
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            699999999999999999999999999988766543

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.26  E-value=0.03  Score=43.83  Aligned_cols=90  Identities=19%  Similarity=0.168  Sum_probs=61.3

Q ss_pred             ccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCCCCCC------------CCccccCCHHHhcccCCEEEEeccCC
Q 042102          146 FTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRTEKPN------------LNYKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      |.|+||+|||=   +++.++.+..+..||+++.+..+.....            .......++++.++.+|+|....-..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~~~   81 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK   81 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecccc
Confidence            78999999998   6899999999999999998877643211            11223568999999999887654322


Q ss_pred             hh-----------hhccccHHHHhccCCCcEEEEeC
Q 042102          211 EE-----------TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       211 ~~-----------t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ..           ....++.+.++.+++.+++.-+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHpl  117 (157)
T d1ml4a2          82 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  117 (157)
T ss_dssp             GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ccccchhhHHhhcchhccCHHHHhhcCCCeEEecCC
Confidence            11           01123455566666666665554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.26  E-value=0.024  Score=45.34  Aligned_cols=38  Identities=13%  Similarity=0.199  Sum_probs=33.8

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP  183 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  183 (317)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.|++.++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            357899999999999999999999996 89999987654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.25  E-value=0.0093  Score=44.41  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .+++.|||.|.+|-++|..+..+|.+|..+.+...-
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            379999999999999999999999999988876543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.24  E-value=0.0091  Score=49.76  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ||+|.|||.|..|-..|..|+..|++|.+++.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6899999999999999999999999999998754

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.17  E-value=0.0098  Score=47.81  Aligned_cols=29  Identities=28%  Similarity=0.313  Sum_probs=23.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC-CEEEEe
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD-CIIGYN  177 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~  177 (317)
                      ++|||-|||+||+.+.+.+...+ ++|...
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaI   31 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGV   31 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEE
Confidence            48999999999999999886554 666543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.11  E-value=0.025  Score=43.87  Aligned_cols=87  Identities=13%  Similarity=0.226  Sum_probs=53.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCC--EEEEeCCCCCC--C-------------C-Ccc-ccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDC--IIGYNSRTEKP--N-------------L-NYK-YYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~--~-------------~-~~~-~~~~l~el~~~aDvV~~~lp  208 (317)
                      .||+||| .|.+|+.+|-.+...|.  ++..+|.....  .             . ... ...+. +.++.||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            3899999 69999999999987776  78888853211  0             0 000 12233 45689999998744


Q ss_pred             C--Chh-h--------hcccc--HHHHhccCCCcEEEEeCC
Q 042102          209 L--TEE-T--------QHIVN--RQVINALGPKGVLINIGR  236 (317)
Q Consensus       209 ~--~~~-t--------~~li~--~~~l~~mk~gavlVN~~r  236 (317)
                      .  .+. +        ..++.  .+.+....|+++++.++.
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            2  221 1        11111  123445678899998854

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.11  E-value=0.0078  Score=48.11  Aligned_cols=36  Identities=17%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~  182 (317)
                      .+++|.|||.|.+|-..|..|+..|++ |.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            578999999999999999999999995 988887654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.013  Score=43.68  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      +++.|||.|.+|-++|..++.+|.+|..+.+.+...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l   57 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL   57 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhh
Confidence            689999999999999999999999999998876543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.06  E-value=0.016  Score=43.14  Aligned_cols=38  Identities=18%  Similarity=0.032  Sum_probs=33.8

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      ..+++|.|||.|.+|-++|..|+.+|.+|..+.+.+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            45789999999999999999999999999988876543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.03  E-value=0.0094  Score=45.58  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEE-EeC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIG-YNS  178 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~  178 (317)
                      ++|||+|+ |+||+.+++.+...|+++. .++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id   32 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVD   32 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEEC
Confidence            47999996 9999999999999898765 444

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.96  E-value=0.0078  Score=50.25  Aligned_cols=65  Identities=14%  Similarity=0.124  Sum_probs=45.4

Q ss_pred             cCCeEEEEecChhHHH-HHHHHhhC-CCEEE-EeCCCCCCCC------C-----ccccCCHHHhcc--cCCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGTA-IAKRAEAF-DCIIG-YNSRTEKPNL------N-----YKYYPNLIDLAS--NCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~------~-----~~~~~~l~el~~--~aDvV~~~lp~~  210 (317)
                      +..+|||||+|.+|+. ....++.. +++|. ++|++++...      +     ...+.++++++.  +.|+|++++|..
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            4468999999999974 56666655 67765 7787654321      1     123578899886  578999998855


Q ss_pred             h
Q 042102          211 E  211 (317)
Q Consensus       211 ~  211 (317)
                      .
T Consensus       112 ~  112 (221)
T d1h6da1         112 L  112 (221)
T ss_dssp             G
T ss_pred             h
Confidence            3

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.0093  Score=46.50  Aligned_cols=81  Identities=6%  Similarity=0.007  Sum_probs=52.2

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---------CCccc----cCC---HHHh-cccCCEEEEeccCChh
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---------LNYKY----YPN---LIDL-ASNCQILVVACSLTEE  212 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~----~~~---l~el-~~~aDvV~~~lp~~~~  212 (317)
                      ++-|+|+|.+|+.+++.|...|.+|.+.+..++..         .++..    ..+   |+++ +.+||.++++++.+..
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            68999999999999999999999988877654310         11111    112   3332 6789999888876544


Q ss_pred             hhccccHHHHhccCCCcEEE
Q 042102          213 TQHIVNRQVINALGPKGVLI  232 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlV  232 (317)
                      +.  .-....+.+.|...+|
T Consensus        85 n~--~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          85 NA--FVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             HH--HHHHHHHHHTSSSCEE
T ss_pred             HH--HHHHHHHHhCCCCceE
Confidence            33  3334445555554333

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.93  E-value=0.022  Score=40.62  Aligned_cols=61  Identities=16%  Similarity=0.185  Sum_probs=41.2

Q ss_pred             CCeEEEEecChhHH-HHHHHHhhCCCEEEEeCCCCCCC------CCcccc-CCHHHhcccCCEEEEecc
Q 042102          148 GKSVGILGMGRIGT-AIAKRAEAFDCIIGYNSRTEKPN------LNYKYY-PNLIDLASNCQILVVACS  208 (317)
Q Consensus       148 g~~vgIiG~G~iG~-~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~-~~l~el~~~aDvV~~~lp  208 (317)
                      +++|=|||.|.+|- ++|+.|+..|+.|.++|+...+.      .+.... ..-.+-+..+|+|+..-.
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsA   69 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPA   69 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTT
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecC
Confidence            36788999999994 78999999999999999875331      122111 111233466787766533

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.92  E-value=0.017  Score=46.41  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=24.6

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRT  180 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~  180 (317)
                      .+|||.|||+||+.+.+.+... .++|. +.|..
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~   36 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTK   36 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCC
Confidence            4899999999999999988654 36665 44443

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.89  E-value=0.027  Score=44.93  Aligned_cols=62  Identities=5%  Similarity=-0.027  Sum_probs=41.6

Q ss_pred             CeEEEEecChhH--HHHHHHHhh---CC-CEEEEeCCCCCCC---------------CC----ccccCCHHHhcccCCEE
Q 042102          149 KSVGILGMGRIG--TAIAKRAEA---FD-CIIGYNSRTEKPN---------------LN----YKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG~G~iG--~~~a~~l~~---~G-~~V~~~~~~~~~~---------------~~----~~~~~~l~el~~~aDvV  203 (317)
                      +||.|||.|..|  ..++..++.   +. -++..+|..+...               ..    .....+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            489999999776  445555543   33 3788899765421               00    11245778899999999


Q ss_pred             EEeccCC
Q 042102          204 VVACSLT  210 (317)
Q Consensus       204 ~~~lp~~  210 (317)
                      +++....
T Consensus        82 v~ta~~~   88 (169)
T d1s6ya1          82 TTQFRVG   88 (169)
T ss_dssp             EECCCTT
T ss_pred             EEccccC
Confidence            9997643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.016  Score=43.73  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=32.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      +++.|||.|.||-++|..++.+|.+|..+.+....
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            68999999999999999999999999999886543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.78  E-value=0.0052  Score=49.05  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCcc----c-cCCHHHhc-----ccCCEEEEeccCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYK----Y-YPNLIDLA-----SNCQILVVACSLT  210 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~----~-~~~l~el~-----~~aDvV~~~lp~~  210 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .+..    . ....++..     ...|+++-++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            47899999999999999999999997 667777765321     1111    0 11122222     1256666665532


Q ss_pred             hhhhccccHHHHhccCCCcEEEEeCC
Q 042102          211 EETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       211 ~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      ..    + +..+..++++..++.+|-
T Consensus       112 ~~----~-~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         112 AT----V-DYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             HH----H-HHGGGGEEEEEEEEECCC
T ss_pred             hH----H-HHHHHHHhCCCEEEEEeC
Confidence            21    1 344566777777777653

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.78  E-value=0.092  Score=42.73  Aligned_cols=130  Identities=10%  Similarity=0.117  Sum_probs=83.1

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCC---------CCCccccCCHHHhcccCCEEEE-eccCChhhhccccHHHHhccCCCcEE
Q 042102          162 AIAKRAEAFDCIIGYNSRTEKP---------NLNYKYYPNLIDLASNCQILVV-ACSLTEETQHIVNRQVINALGPKGVL  231 (317)
Q Consensus       162 ~~a~~l~~~G~~V~~~~~~~~~---------~~~~~~~~~l~el~~~aDvV~~-~lp~~~~t~~li~~~~l~~mk~gavl  231 (317)
                      ..++.|...|++|.+=.-....         ..++....+.++++.++|+|+. ..|...+    .+.+.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            5788899999999885432211         1233345677899999998764 4554433    244678899999999


Q ss_pred             EEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHH
Q 042102          232 INIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF  307 (317)
Q Consensus       232 VN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~  307 (317)
                      |..-.  .....++.++|.+.++...++|....   . ..-..+|  ++++    -+.=+-.+.....+.++.+|+
T Consensus        97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~ipR---i-sraQ~md--~Lss----qa~iaG~~a~~~~a~~l~~~~  160 (194)
T d1l7da2          97 MCHLG--ALTNRPVVEALTKRKITAYAMELMPR---I-SRAQSMD--ILSS----QSNLVAADASPLFAKNLLNFL  160 (194)
T ss_dssp             EEECC--GGGCHHHHHHHHHTTCEEEEGGGCCC---S-GGGGGGC--HHHH----HHHHGHHHHHHHHHHHHHHHH
T ss_pred             EEecc--cccchhHHHHHHhcCceEEeeecccc---c-CCCCccC--CcCc----chhhhhHhHHHHHHHHHHhhh
Confidence            98753  55677899999999999888876521   1 1222232  2222    111122345556777777766

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.76  E-value=0.016  Score=43.35  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .+++.|||.|.||-++|..++.+|++|..+.+...
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            47899999999999999999999999988876544

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.68  E-value=0.016  Score=49.35  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=33.5

Q ss_pred             cccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +|+||++-|.| .+.||+++|+.|...|++|+..+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999 55699999999999999999998865

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.013  Score=49.16  Aligned_cols=39  Identities=18%  Similarity=0.093  Sum_probs=34.6

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +.|+||++-|-|.+. ||+++|+.|...|++|+..+++.+
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            368999999999875 999999999999999998888654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.01  Score=50.33  Aligned_cols=39  Identities=23%  Similarity=0.233  Sum_probs=35.2

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +.|.||++.|-|.+. ||+++|+.+...|++|+..+++.+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999999886 999999999999999999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.62  E-value=0.011  Score=44.47  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=33.2

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      .+++.|||.|.||-++|..+..+|++|.+..+.+...
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            4799999999999999999999999999998876543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.011  Score=47.12  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=40.9

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhh-CCCEE-EEeCCCCCCC-------------CCccccCCHHHhcccCCEEEEe
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEA-FDCII-GYNSRTEKPN-------------LNYKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~-~G~~V-~~~~~~~~~~-------------~~~~~~~~l~el~~~aDvV~~~  206 (317)
                      ..+|+|+|+ |+||+.+++.+.. -++++ .++++...+.             .+.....++++++..+|+|+=-
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEe
Confidence            358999995 9999999998865 46776 4666543221             1122345678888999988655

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.58  E-value=0.018  Score=41.62  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             cCCeEEEEecChhH-HHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILGMGRIG-TAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG-~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +.+++=|||.|.+| +++|+.|+..|++|.++|...
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            56799999999999 667999999999999999764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.57  E-value=0.019  Score=43.11  Aligned_cols=36  Identities=19%  Similarity=0.223  Sum_probs=32.7

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      ++++.|||.|.+|-++|..|+..|.+|..+.+.+..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            579999999999999999999999999999876644

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.54  E-value=0.015  Score=49.43  Aligned_cols=85  Identities=18%  Similarity=0.208  Sum_probs=53.3

Q ss_pred             ccCCeEEEEec-C--hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102          146 FTGKSVGILGM-G--RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI  222 (317)
Q Consensus       146 l~g~~vgIiG~-G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l  222 (317)
                      |+||++.|.|. |  .||.++|+.|...|++|+..+++.+..   .....+.+....+.++..-+....+...+++ +..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~---~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-~~~   78 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLE---KRVRPIAQELNSPYVYELDVSKEEHFKSLYN-SVK   78 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTH---HHHHHHHHHTTCCCEEECCTTCHHHHHHHHH-HHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHHhhCCceeEeeecccchhhHHHHHH-HHH
Confidence            88999999997 4  599999999999999999888764311   1122334444555655444444444554543 333


Q ss_pred             hccCCCcEEEEe
Q 042102          223 NALGPKGVLINI  234 (317)
Q Consensus       223 ~~mk~gavlVN~  234 (317)
                      +.+.+=-++||.
T Consensus        79 ~~~g~id~lV~n   90 (274)
T d2pd4a1          79 KDLGSLDFIVHS   90 (274)
T ss_dssp             HHTSCEEEEEEC
T ss_pred             HHcCCCCeEEee
Confidence            444444445544

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.53  E-value=0.013  Score=44.23  Aligned_cols=32  Identities=9%  Similarity=0.026  Sum_probs=29.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      +++.|||.|.||-++|..++.+|.+|..+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            58999999999999999999999999877654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.024  Score=45.79  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=35.6

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .....+|+|+|||.|..|-+.|..|+..|++|..|++...
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            3456789999999999999999999999999999998654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.49  E-value=0.018  Score=44.75  Aligned_cols=84  Identities=13%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCC---CEEEEe-CCCCC-CCCC-----ccccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFD---CIIGYN-SRTEK-PNLN-----YKYYPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G---~~V~~~-~~~~~-~~~~-----~~~~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      .++|||||. |.+|+++.+.|...+   .++... +++.. +...     ........+.+..+|++++++|...+.. +
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~-~   80 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRA-H   80 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHH-H
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhh-h
Confidence            368999987 999999999996332   355543 32221 1111     0011112345788999999998443322 1


Q ss_pred             ccHHHHhccCCCcEEEEeCC
Q 042102          217 VNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~r  236 (317)
                      . .   ...+.|..+||.|.
T Consensus        81 ~-~---~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          81 A-E---RARAAGCSVIDLSG   96 (144)
T ss_dssp             H-H---HHHHTTCEEEETTC
T ss_pred             c-c---ccccCCceEEeech
Confidence            1 2   22457899999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.48  E-value=0.021  Score=42.95  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=33.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .+++|.|||.|.+|-++|..+..+|.+|..+.+....
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            4689999999999999999999999999998876543

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.47  E-value=0.015  Score=45.32  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=41.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCC-------------CC--c--c---ccCCHHHhcccCCEEEE
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPN-------------LN--Y--K---YYPNLIDLASNCQILVV  205 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-------------~~--~--~---~~~~l~el~~~aDvV~~  205 (317)
                      +||+|||. |.+|+.+|..+...|.  ++..+|..+...             ..  .  .   ...+-.+.++.||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            58999995 9999999999998885  788888654210             00  0  0   01223467889999999


Q ss_pred             ec
Q 042102          206 AC  207 (317)
Q Consensus       206 ~l  207 (317)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            83

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=94.46  E-value=0.065  Score=41.71  Aligned_cols=102  Identities=18%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCC----CEEEEeC-CCCC-CCCCcc------ccCCHHHhcccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFD----CIIGYNS-RTEK-PNLNYK------YYPNLIDLASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G----~~V~~~~-~~~~-~~~~~~------~~~~l~el~~~aDvV~~~lp~~~~t~~  215 (317)
                      ++|||||. |..|+++.++|....    .++..+. ++.. +.....      ....-.+.++++|++++|+|...+-. 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~-   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEK-   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHH-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHH-
Confidence            57999995 999999998775421    3555433 2221 111111      11112355789999999999543321 


Q ss_pred             cccHHHHhccCCCcEEEEeCCCcc-----------cCHHHHHHHHHhCC
Q 042102          216 IVNRQVINALGPKGVLINIGRGLL-----------VDEHELVSALLQGR  253 (317)
Q Consensus       216 li~~~~l~~mk~gavlVN~~rg~~-----------vd~~aL~~al~~g~  253 (317)
                       +-+... .-..++++|+.|.-==           ++.+.+.+++++|.
T Consensus        80 -~~~~l~-~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          80 -VYPALR-QAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             -HHHHHH-HTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             -HhHHHH-HcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence             222222 2233467888874221           34555666665544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.44  E-value=0.018  Score=43.61  Aligned_cols=36  Identities=14%  Similarity=0.136  Sum_probs=32.5

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .+++.|||.|.||-++|..++.+|.+|..+.+.+.-
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            479999999999999999999999999999876543

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.41  E-value=0.05  Score=39.97  Aligned_cols=59  Identities=14%  Similarity=0.053  Sum_probs=46.1

Q ss_pred             CCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCCC---CccccCCHHHhcccCCEEEEe
Q 042102          148 GKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPNL---NYKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       148 g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDvV~~~  206 (317)
                      .++|||+|+          ..-.-.+.+.|+..|++|.+|||......   ......++++++..||+|+++
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~   86 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTN   86 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECS
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEc
Confidence            358999998          45678899999999999999999765432   223456899999999977654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.34  E-value=0.024  Score=42.44  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=31.7

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      ++++.|||.|.+|-++|..|..+|.+|..+.+.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            47899999999999999999999999999887653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.22  E-value=0.0078  Score=45.63  Aligned_cols=80  Identities=13%  Similarity=0.057  Sum_probs=49.1

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc----cCC---HHHh-cccCCEEEEeccCChhhhc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY----YPN---LIDL-ASNCQILVVACSLTEETQH  215 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~el-~~~aDvV~~~lp~~~~t~~  215 (317)
                      |++-|+|+|.+|+.+++.|++.+  |.+.+..+...     .+...    ..+   |.++ +.+|+.++++.+.+..+. 
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~-   77 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI-   77 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH-
Confidence            57899999999999999998665  44445444321     11111    122   3332 788999999887655433 


Q ss_pred             cccHHHHhccCCCcEEE
Q 042102          216 IVNRQVINALGPKGVLI  232 (317)
Q Consensus       216 li~~~~l~~mk~gavlV  232 (317)
                       +-....+.+.|...+|
T Consensus        78 -~~~~~~r~~~~~~~ii   93 (129)
T d2fy8a1          78 -HCILGIRKIDESVRII   93 (129)
T ss_dssp             -HHHHHHHHHCSSSCEE
T ss_pred             -HHHHHHHHHCCCceEE
Confidence             3344555666664333

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.087  Score=41.20  Aligned_cols=90  Identities=11%  Similarity=0.179  Sum_probs=60.7

Q ss_pred             ccCCeEEEEec---ChhHHHHHHHHhhCCC-EEEEeCCCCCCC------------CCccccCCHHHhcccCCEEEEeccC
Q 042102          146 FTGKSVGILGM---GRIGTAIAKRAEAFDC-IIGYNSRTEKPN------------LNYKYYPNLIDLASNCQILVVACSL  209 (317)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~a~~l~~~G~-~V~~~~~~~~~~------------~~~~~~~~l~el~~~aDvV~~~lp~  209 (317)
                      +.|.+|++||=   |++.++.+..+..||. .+.+..+.....            .......+++++++++|+|...--.
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            67999999996   6699999999999975 556665532211            1122357889999999998765322


Q ss_pred             Chh----------hhccccHHHHhccCCCcEEEEeC
Q 042102          210 TEE----------TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       210 ~~~----------t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ...          ....++++.++.++++++|.-+.
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            111          11233566777778888877765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.03  E-value=0.026  Score=41.76  Aligned_cols=36  Identities=14%  Similarity=0.212  Sum_probs=32.4

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .+++.|||.|.+|-++|..++.+|.+|..+.+.+.-
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            479999999999999999999999999998876543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.91  E-value=0.027  Score=43.72  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~  181 (317)
                      .||+|.|||.|.+|-++|..|+.+|  .+|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999999999999999877  5888888765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.022  Score=48.36  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             cccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          143 TTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |..|.||++.|-|. +.||+++|+.|...|++|...+++.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34689999999997 6899999999999999999998764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.86  E-value=0.037  Score=42.10  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=33.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .++++.|||.|.+|-++|..++..|.+|.++++....
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            4689999999999999999999999999999887654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.75  E-value=0.024  Score=47.91  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=33.3

Q ss_pred             ccccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          144 TKFTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       144 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .+|+||++.|-|.+   .||+++|++|...|++|...+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            46899999999975   599999999999999998877653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.67  E-value=0.017  Score=49.19  Aligned_cols=38  Identities=24%  Similarity=0.306  Sum_probs=34.0

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +|.||++.|-|.+ .||+++|+.|...|++|+..+|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999987 5999999999999999999888653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.58  E-value=0.019  Score=45.67  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=30.2

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|.+|.|.|. |.+|+..++.++.+|++|++..++.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~   60 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   60 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccc
Confidence            4789999885 9999999999999999988776543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.019  Score=48.39  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=32.8

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  180 (317)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            35999999999999999999999999998 67777753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.34  E-value=0.046  Score=45.22  Aligned_cols=36  Identities=14%  Similarity=0.134  Sum_probs=32.5

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      ..++|.|||.|..|-.+|..|+..|.+|.++++...
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457899999999999999999999999999998654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.20  E-value=0.091  Score=41.87  Aligned_cols=93  Identities=11%  Similarity=0.183  Sum_probs=57.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhC-CCEEEEe-CCCCCCCCC-----------------ccccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAF-DCIIGYN-SRTEKPNLN-----------------YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~~-----------------~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      ++|||+| .|-.|+++.+.|... .+++... .+......+                 .....+.......+|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4899999 799999999999886 5666533 221111100                 0012344556788999999999


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHH
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV  246 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~  246 (317)
                      .....+     ..-...+.|..+||.|..--.+....+
T Consensus        82 ~~~s~~-----~~~~~~~~~~~vIDlSadfRl~~~~~~  114 (179)
T d2g17a1          82 HEVSHD-----LAPQFLQAGCVVFDLSGAFRVNDRAFY  114 (179)
T ss_dssp             HHHHHH-----HHHHHHHTTCEEEECSSTTSSSCHHHH
T ss_pred             chhHHH-----HhhhhhhcCceeecccccccccccccc
Confidence            443322     122234578999999865555443333

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.11  E-value=0.035  Score=46.97  Aligned_cols=35  Identities=23%  Similarity=0.175  Sum_probs=31.9

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ..|+|.|||.|..|-..|..|+..|++|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999998754

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.10  E-value=0.031  Score=43.74  Aligned_cols=84  Identities=14%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCC---EEEEeCCCCCCCCC-------ccccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDC---IIGYNSRTEKPNLN-------YKYYPNLIDLASNCQILVVACSLTEETQHI  216 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~~-------~~~~~~l~el~~~aDvV~~~lp~~~~t~~l  216 (317)
                      |-+|||||. |-+|+++.+.|..-.+   ++.+...+......       .......++....+|++++++|...+.   
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~---   77 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSA---   77 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHH---
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchh---
Confidence            448999998 9999999999976543   44444322111110       011223445678899999998844322   


Q ss_pred             ccHHHHhccCCCcEEEEeCC
Q 042102          217 VNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       217 i~~~~l~~mk~gavlVN~~r  236 (317)
                        +...+..+.|..+|+.|.
T Consensus        78 --~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          78 --KYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             --HHHHHHHHTTCEEEECSS
T ss_pred             --hHHhhhccccceehhcCh
Confidence              222234567999999874

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.04  E-value=0.021  Score=48.05  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             cccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|.||++.|.|.+. ||+++|+.|...|++|+..+|+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            38899999999886 999999999999999998887653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.02  E-value=0.042  Score=45.04  Aligned_cols=34  Identities=26%  Similarity=0.190  Sum_probs=30.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      -++|.|||.|.+|-.+|..|+..|.+|.++++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999998743

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.00  E-value=0.1  Score=41.39  Aligned_cols=62  Identities=10%  Similarity=0.056  Sum_probs=41.0

Q ss_pred             CCeEEEEecChhHHHH--HHHHh---hCC-CEEEEeCCCCCCCC---------------C--ccccCCHHHhcccCCEEE
Q 042102          148 GKSVGILGMGRIGTAI--AKRAE---AFD-CIIGYNSRTEKPNL---------------N--YKYYPNLIDLASNCQILV  204 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~--a~~l~---~~G-~~V~~~~~~~~~~~---------------~--~~~~~~l~el~~~aDvV~  204 (317)
                      ..+|.|||.|.+|...  ...++   .+. -++..+|..++...               .  .....+..|.++.||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            3589999999987642  23332   222 37888987654310               1  113467899999999999


Q ss_pred             EeccC
Q 042102          205 VACSL  209 (317)
Q Consensus       205 ~~lp~  209 (317)
                      ++.-.
T Consensus        83 itag~   87 (167)
T d1u8xx1          83 AHIRV   87 (167)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            98653

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.99  E-value=0.06  Score=45.13  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=33.1

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +|.||++.|-|.+ .||+++|+.|...|++|+..+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4889999999975 699999999999999999988764

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.91  E-value=0.29  Score=38.90  Aligned_cols=92  Identities=21%  Similarity=0.302  Sum_probs=58.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCC-CEEEEe-CCCCCCC-C--------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFD-CIIGYN-SRTEKPN-L--------N--YKYYPNLIDLASNCQILVVACSLTEETQ  214 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~-~~~~~~~-~--------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~  214 (317)
                      .+|||+|. |-.|+++.+.|...- .++.+. +++.... .        .  .....+.+++.+++|++++++|...+- 
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~-   80 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASY-   80 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHH-
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHH-
Confidence            47999995 899999999998754 465543 3322211 0        0  012346677788999999999976542 


Q ss_pred             ccccHHHHhccCCCcEEEEeCCCcccCHHHHHH
Q 042102          215 HIVNRQVINALGPKGVLINIGRGLLVDEHELVS  247 (317)
Q Consensus       215 ~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~  247 (317)
                           +..... .+..+||.|..==.+....++
T Consensus        81 -----~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          81 -----DLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             -----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             -----HHHHhh-ccceEEecCccccccchhhHH
Confidence                 222333 578999998654454444443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.70  E-value=0.019  Score=48.83  Aligned_cols=37  Identities=32%  Similarity=0.368  Sum_probs=33.4

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|.||++.|-|.+ .||+++|+.|...|++|...+++.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999985 499999999999999999988864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.66  E-value=0.14  Score=44.28  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .|.||++.|-|.+ .||+++|+.|...|++|++.++....
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~   43 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDF   43 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCT
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence            5889999999887 49999999999999999999886543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.66  E-value=0.032  Score=47.10  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=33.2

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|+||++-|-|.+ .||+++|+.|...|++|++.+++.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4899999999984 599999999999999999988865

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.073  Score=44.60  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=33.4

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|.||++.|.|.+ .||+++|+.|...|++|+..+|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5899999999976 599999999999999999998864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.50  E-value=0.1  Score=43.93  Aligned_cols=65  Identities=20%  Similarity=0.111  Sum_probs=46.4

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------------Ccc-------ccCCHHHhcccCCEEEEe
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------------NYK-------YYPNLIDLASNCQILVVA  206 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~~-------~~~~l~el~~~aDvV~~~  206 (317)
                      .+||.|.|. |.||+.+++.|...|.+|.+..|+.....             +..       ....+.+.+..++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            357999995 99999999999999999998887653211             111       112355678888988887


Q ss_pred             ccCChh
Q 042102          207 CSLTEE  212 (317)
Q Consensus       207 lp~~~~  212 (317)
                      .+....
T Consensus        83 ~~~~~~   88 (312)
T d1qyda_          83 LAGGVL   88 (312)
T ss_dssp             CCCSSS
T ss_pred             hhhccc
Confidence            765433

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.45  E-value=0.049  Score=43.28  Aligned_cols=38  Identities=16%  Similarity=0.224  Sum_probs=33.0

Q ss_pred             ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC
Q 042102          146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP  183 (317)
Q Consensus       146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  183 (317)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.|++..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            357899999999999999999999997 78888886543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.37  E-value=0.073  Score=43.90  Aligned_cols=39  Identities=23%  Similarity=0.231  Sum_probs=34.7

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      ..-.+++|.|||.|..|-..|..|+..|++|.++++..+
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            345789999999999999999999999999999987654

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=92.33  E-value=0.18  Score=42.56  Aligned_cols=83  Identities=12%  Similarity=0.195  Sum_probs=55.1

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA  224 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~  224 (317)
                      ...|++|++||+-    ...++++..|+++.+++++++..  ......-++++++||+|++.-  +.=..+-+ ...|+.
T Consensus       119 ~~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~g--d~p~~~~~~lLp~aD~viiTG--sTlvN~Tl-~~LL~~  189 (251)
T d2h1qa1         119 EVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEG--DYPLPASEFILPECDYVYITC--ASVVDKTL-PRLLEL  189 (251)
T ss_dssp             TTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTT--CEEGGGHHHHGGGCSEEEEET--HHHHHTCH-HHHHHH
T ss_pred             ccCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCC--CCCchHHHHhhhcCCEEEEEe--chhhcCCH-HHHHHh
Confidence            3579999999874    46667778889999999876433  222234678999999998872  22111111 456677


Q ss_pred             cCCCcEEEEeCC
Q 042102          225 LGPKGVLINIGR  236 (317)
Q Consensus       225 mk~gavlVN~~r  236 (317)
                      .|+...+|=+|-
T Consensus       190 ~~~a~~vvl~GP  201 (251)
T d2h1qa1         190 SRNARRITLVGP  201 (251)
T ss_dssp             TTTSSEEEEEST
T ss_pred             CCcCCEEEEECC
Confidence            777766666554

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.29  E-value=0.056  Score=43.03  Aligned_cols=85  Identities=13%  Similarity=0.194  Sum_probs=58.3

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc------ccCCHHHh-----cccCCEEEEeccC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK------YYPNLIDL-----ASNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~------~~~~l~el-----~~~aDvV~~~lp~  209 (317)
                      .|.+|.|.|. |.+|+..++.++..|++|++..+++++.     .++.      .....++.     -...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            5889999998 6699999999999999999887665421     1111      11112222     234788888764 


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGRG  237 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~rg  237 (317)
                       .++.    .+.++.++++..++.+|..
T Consensus       108 -~~~~----~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 -GEFL----NTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             -HHHH----HHHGGGEEEEEEEEECCCG
T ss_pred             -chhh----hhhhhhccCCCeEEeecce
Confidence             2222    4678889999999998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.28  E-value=0.05  Score=44.93  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=30.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      ++|.|||.|..|-..|..|+..|.+|++++++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4799999999999999999999999999987543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.23  E-value=0.02  Score=45.09  Aligned_cols=84  Identities=18%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCcc-----ccCCH-HHhc-----ccCCEEEEecc
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYK-----YYPNL-IDLA-----SNCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~-----~~~~l-~el~-----~~aDvV~~~lp  208 (317)
                      .|.+|.|+|. |.+|...++.++..|. +|++.++++++.     .++.     ...+. ++..     ...|+++-+..
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            4679999995 9999999999999995 788888765432     1111     01122 2222     22566666544


Q ss_pred             CChhhhccccHHHHhccCCCcEEEEeC
Q 042102          209 LTEETQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       209 ~~~~t~~li~~~~l~~mk~gavlVN~~  235 (317)
                       .+.+-    +..+..++++..++.+|
T Consensus       107 -~~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         107 -SEKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             -CHHHH----TTGGGGEEEEEEEEECC
T ss_pred             -cchHH----HhhhhhcccCCEEEEec
Confidence             22221    23456677777777764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.19  E-value=0.033  Score=47.33  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=33.5

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|.||++.|-|.+ .||+++|+.|...|++|+..+|+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999987 599999999999999999988764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.15  E-value=0.07  Score=45.16  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             ccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          146 FTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       146 l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      |.||++.|-|.+ .||+++|+.|...|++|...+++.+
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            789999999987 5999999999999999999988653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.06  E-value=0.068  Score=46.49  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=31.9

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|+|.|||.|..|-.+|..|+..|.+|.+++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            68999999999999999999999999999987654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.048  Score=45.66  Aligned_cols=36  Identities=17%  Similarity=0.347  Sum_probs=32.3

Q ss_pred             ccCCeEEEEecCh---hHHHHHHHHhhCCCEEEEeCCCC
Q 042102          146 FTGKSVGILGMGR---IGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       146 l~g~~vgIiG~G~---iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |.||++.|-|.+.   ||+++|+.|...|++|+..+++.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            8899999999864   99999999999999998887764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.03  E-value=0.11  Score=43.31  Aligned_cols=36  Identities=22%  Similarity=0.116  Sum_probs=32.5

Q ss_pred             ccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          146 FTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       146 l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |.||++.|-|.+ .||+++|+.|...|++|+..+|+.
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            789999999975 599999999999999999998864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.02  E-value=0.062  Score=45.16  Aligned_cols=38  Identities=26%  Similarity=0.219  Sum_probs=33.5

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|.||++.|-|.+ .||+++|+.|...|++|...+++..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4899999999985 5999999999999999998887653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.038  Score=47.07  Aligned_cols=39  Identities=21%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      ..|+||++.|.|.+. ||+++|+.|...|++|+..+|+.+
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            349999999999876 999999999999999999988653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=91.97  E-value=0.14  Score=42.99  Aligned_cols=87  Identities=15%  Similarity=0.144  Sum_probs=52.8

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCC-h--hhhccccHH
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLT-E--ETQHIVNRQ  220 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~-~--~t~~li~~~  220 (317)
                      +|.||++-|-|.+ .||.++|+.+...|++|+...++.+..   .....+........+.+..+-.+ +  +.+.++++ 
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-   77 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP---TALAELKAINPKVNITFHTYDVTVPVAESKKLLKK-   77 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH---HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHH-
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH---HHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHH-
Confidence            4889999999988 599999999999999887665544322   11122334445556666665554 2  34444432 


Q ss_pred             HHhccCCCcEEEEeC
Q 042102          221 VINALGPKGVLINIG  235 (317)
Q Consensus       221 ~l~~mk~gavlVN~~  235 (317)
                      ..+...+=-++||.+
T Consensus        78 ~~~~~g~iDilvnnA   92 (254)
T d1sbya1          78 IFDQLKTVDILINGA   92 (254)
T ss_dssp             HHHHHSCCCEEEECC
T ss_pred             HHHHcCCCCEEEeCC
Confidence            233333222566654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.038  Score=46.44  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|.||++-|-|.+ .||+++|++|...|++|+..+|+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3789999998865 699999999999999999988864

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.87  E-value=0.078  Score=45.35  Aligned_cols=39  Identities=21%  Similarity=0.232  Sum_probs=35.1

Q ss_pred             ccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          144 TKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      ..|+||++.|-| .|.||+++|+.|...|++|++.+|+..
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            579999999998 688999999999999999999888753

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.85  E-value=0.064  Score=39.01  Aligned_cols=39  Identities=18%  Similarity=0.166  Sum_probs=32.1

Q ss_pred             ccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          142 MTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       142 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      ...+++||+|+|||.|.-|..+|.-|...+.++++..++
T Consensus        26 ~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          26 EPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             CGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             chhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            356789999999999999999999998887776554443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.15  Score=42.84  Aligned_cols=89  Identities=12%  Similarity=0.127  Sum_probs=54.3

Q ss_pred             ccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCCh--hhhccccHH
Q 042102          144 TKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTE--ETQHIVNRQ  220 (317)
Q Consensus       144 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~--~t~~li~~~  220 (317)
                      ..|+||++.|-|.+ .||+++|+.|...|++|++.+++......  ....+.+.-....++.+.|-.+.  +.+.+++ .
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~--~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~-~   82 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEE--LAAECKSAGYPGTLIPYRCDLSNEEDILSMFS-A   82 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH--HHHHHHHTTCSSEEEEEECCTTCHHHHHHHHH-H
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH--HHHHHHhcCCCceEEEEEccCCCHHHHHHHHH-H
Confidence            45999999999975 79999999999999999998876432110  01112221123456666655443  3444554 3


Q ss_pred             HHhccCCCcEEEEeC
Q 042102          221 VINALGPKGVLINIG  235 (317)
Q Consensus       221 ~l~~mk~gavlVN~~  235 (317)
                      ..+.+.+=-++||.+
T Consensus        83 ~~~~~g~iD~lVnnA   97 (257)
T d1xg5a_          83 IRSQHSGVDICINNA   97 (257)
T ss_dssp             HHHHHCCCSEEEECC
T ss_pred             HHHhcCCCCEEEecc
Confidence            333333334566765

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=91.69  E-value=0.067  Score=45.18  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=35.2

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      -+|.||++.|-|.+. ||+++|+.|...|++|+..+++.+.
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            368999999999876 9999999999999999998887643

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=91.68  E-value=0.56  Score=37.17  Aligned_cols=88  Identities=11%  Similarity=0.120  Sum_probs=53.4

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCC-CEEEEe-CCCCCCCC---------C---ccccCCHHHhcccCCEEEEeccCChh
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFD-CIIGYN-SRTEKPNL---------N---YKYYPNLIDLASNCQILVVACSLTEE  212 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~-~~~~~~~~---------~---~~~~~~l~el~~~aDvV~~~lp~~~~  212 (317)
                      ..+|||+|. |-.|+++.+.|...- +++.+. +++.....         .   .......++..+.+|++++++|....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            458999995 899999999998653 455433 33322110         0   00112234567899999999996543


Q ss_pred             hhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102          213 TQHIVNRQVINALGPKGVLINIGRGLLVD  241 (317)
Q Consensus       213 t~~li~~~~l~~mk~gavlVN~~rg~~vd  241 (317)
                            .+....+.+....|+.+.+.-..
T Consensus        85 ------~~~~~~l~~~~~~v~~~~~~~~~  107 (183)
T d2cvoa1          85 ------QEIIKGLPQELKIVDLSADFRLR  107 (183)
T ss_dssp             ------HHHHHTSCSSCEEEECSSTTTCS
T ss_pred             ------HHHHHHHHhcCcccccchhhhcc
Confidence                  34444455556666665554443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.62  E-value=0.1  Score=43.49  Aligned_cols=57  Identities=11%  Similarity=0.140  Sum_probs=41.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcc--cCCEEEEecc
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLAS--NCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~--~aDvV~~~lp  208 (317)
                      ++|.|.|. |-||+.+++.|+..|.+|++.++....   .....+++++++  ..|+|+-+..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D---~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD---ITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC---TTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc---CCCHHHHHHHHHHcCCCEEEeecc
Confidence            57999997 999999999999999999999886421   111233556665  4587765543

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=91.55  E-value=0.077  Score=44.22  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=42.7

Q ss_pred             cCCeEEEEecChhH----HHHHHHHhhC--CCEEE-EeCCCCCCC---------CCccccCCHHHhcc--cCCEEEEecc
Q 042102          147 TGKSVGILGMGRIG----TAIAKRAEAF--DCIIG-YNSRTEKPN---------LNYKYYPNLIDLAS--NCQILVVACS  208 (317)
Q Consensus       147 ~g~~vgIiG~G~iG----~~~a~~l~~~--G~~V~-~~~~~~~~~---------~~~~~~~~l~el~~--~aDvV~~~lp  208 (317)
                      +-.+|||||+|.+|    +.-...++..  +++|. ++|++....         .....+.+++++++  +-|+|++++|
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            44689999999854    4444445544  57765 678765321         12234578999985  4778999988


Q ss_pred             CChh
Q 042102          209 LTEE  212 (317)
Q Consensus       209 ~~~~  212 (317)
                      ....
T Consensus        95 ~~~h   98 (237)
T d2nvwa1          95 VPEH   98 (237)
T ss_dssp             HHHH
T ss_pred             Ccch
Confidence            5443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.49  E-value=0.13  Score=42.76  Aligned_cols=40  Identities=33%  Similarity=0.362  Sum_probs=35.2

Q ss_pred             cccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102          145 KFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPN  184 (317)
Q Consensus       145 ~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~  184 (317)
                      .|.||++.|-|.+. ||+++|+.|...|++|...+|+.+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            58999999999874 99999999999999999998876543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.47  E-value=0.032  Score=47.40  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=34.0

Q ss_pred             cccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|+||++.|-|.+. ||+++|+.|...|++|+..+++.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999999875 999999999999999999888653

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.40  E-value=0.076  Score=44.53  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=32.2

Q ss_pred             cccCCeEEEEec-Ch--hHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM-GR--IGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~--iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|.||++.|.|. |.  ||.++|+.|...|++|+..+++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            389999999996 54  99999999999999998877654

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.13  Score=41.17  Aligned_cols=91  Identities=8%  Similarity=0.040  Sum_probs=63.2

Q ss_pred             cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CCccccCCHHHhcccCCEEEEe
Q 042102          145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LNYKYYPNLIDLASNCQILVVA  206 (317)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~~~~~~~l~el~~~aDvV~~~  206 (317)
                      .+.|.+|++||=|  ++.++++..+..||+++.+..+..-..                .......++++.++.+|+|...
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            5789999999955  799999999999999999887642211                0122357899999999998764


Q ss_pred             ccCC----hh----------hhccccHHHHhccCCCcEEEEeC
Q 042102          207 CSLT----EE----------TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       207 lp~~----~~----------t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      .=..    ..          ....++.......+++++|.-+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            3211    10          11233444555678889998875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.15  E-value=0.11  Score=40.89  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=32.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  183 (317)
                      .|.+|.|+|.|.+|...+..++.+|+ +|++.++++++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            57899999999999999999999996 78888887654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.12  E-value=0.18  Score=41.86  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=31.5

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .|+|.|.|. |.||+.+++.|...|.+|.+.+|....
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            478999996 999999999999999999999886543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.05  E-value=0.18  Score=37.77  Aligned_cols=40  Identities=13%  Similarity=0.147  Sum_probs=35.2

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +...+||+|+|||.|..+-.-|..|..+.-+|+++-|..+
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            4456899999999999999999999999999998877654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.14  Score=44.82  Aligned_cols=32  Identities=22%  Similarity=0.097  Sum_probs=27.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      |.|.|.| .|-||+.+++.|...|.+|++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            5566778 8999999999999999999999874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.78  E-value=0.11  Score=43.75  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=33.8

Q ss_pred             cccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +|+||++.|-|.+. ||+++|+.|...|++|.+.+++.+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999999864 999999999999999999888653

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.74  E-value=0.41  Score=38.58  Aligned_cols=92  Identities=11%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCC---------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEE
Q 042102          162 AIAKRAEAFDCIIGYNSRTEKPN---------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI  232 (317)
Q Consensus       162 ~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV  232 (317)
                      ..+++|...|++|.+=.-.....         .++....+.+++. +||+|+..-|.+        .+.++.||+|+++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence            46788888999998854322211         1233345566666 589887665533        34578899999999


Q ss_pred             EeCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 042102          233 NIGRGLLVDEHELVSALLQGRLGGAGLDVFEH  264 (317)
Q Consensus       233 N~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~  264 (317)
                      -.-.  ......++++|.+.++...++|....
T Consensus        92 ~~l~--p~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          92 TYLH--LAAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             ECCC--GGGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EecC--cccchHHHHHHHHcCCEEEEeeeccc
Confidence            8754  34457899999999999888887644

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=90.73  E-value=0.1  Score=45.49  Aligned_cols=65  Identities=15%  Similarity=0.209  Sum_probs=46.7

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--------CCcc-----ccC---CHHHhcccCCEEEEeccC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--------LNYK-----YYP---NLIDLASNCQILVVACSL  209 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------~~~~-----~~~---~l~el~~~aDvV~~~lp~  209 (317)
                      +.|||.|+|. |.||+.+++.|.+.|.+|.+..|++...        .+..     ..+   .++.++..+|.++...+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            3589999994 9999999999999999998887755421        1111     111   245678889988887665


Q ss_pred             Ch
Q 042102          210 TE  211 (317)
Q Consensus       210 ~~  211 (317)
                      ..
T Consensus        82 ~~   83 (350)
T d1xgka_          82 QA   83 (350)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.70  E-value=0.046  Score=46.25  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=32.8

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |.||++-|-|. +.||+++|+.|...|++|...+++.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            88999999998 6799999999999999999988764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.24  Score=40.47  Aligned_cols=65  Identities=17%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             ccCCeEEEEe-cChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC------------ccccCCHHHhcccCCEEEEeccCC
Q 042102          146 FTGKSVGILG-MGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN------------YKYYPNLIDLASNCQILVVACSLT  210 (317)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~------------~~~~~~l~el~~~aDvV~~~lp~~  210 (317)
                      ..+++|.|.| .|.+|+.+++.|..-|.  +|.+.+|++.....            .....++.+.++.+|+++.++..+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence            4678999998 69999999999987774  89888876533211            112345667789999998876543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=0.13  Score=42.73  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      ..+|.|||.|.-|-..|..|+..|.+|.++..+..
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            45799999999999999999999999999986543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.51  E-value=0.1  Score=44.39  Aligned_cols=36  Identities=28%  Similarity=0.247  Sum_probs=32.2

Q ss_pred             ccccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCC
Q 042102          144 TKFTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSR  179 (317)
Q Consensus       144 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~  179 (317)
                      -+|+||++.|-|.+   .||+++|+.|...|++|+..++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            46999999999986   5999999999999999987765

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.44  E-value=0.064  Score=45.84  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=33.3

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|+||++.|-|. +.||+++|+.|...|++|...+|+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            378999999997 5899999999999999999988764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.39  E-value=0.05  Score=45.98  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=33.0

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|+||++.|-|.+ .||+++|+.|...|++|...+++.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4899999999965 599999999999999999998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.043  Score=46.44  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=33.4

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|+||++-|-|.+ .||+++|+.|...|++|...+++.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4899999999875 6999999999999999999887643

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=90.33  E-value=0.048  Score=46.37  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ++|+||++-|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4699999999885 6799999999999999999888764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.29  E-value=0.12  Score=43.37  Aligned_cols=85  Identities=20%  Similarity=0.200  Sum_probs=51.1

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCCh--hhhccccHHH
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTE--ETQHIVNRQV  221 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~--~t~~li~~~~  221 (317)
                      .|+||++.|-|. +.||+++|+.|...|++|...+++.+....     -.+++-...++..+.+-.+.  +.+.++. ..
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~-----~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~-~~   76 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEK-----AAKSVGTPDQIQFFQHDSSDEDGWTKLFD-AT   76 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-----HHHHHCCTTTEEEEECCTTCHHHHHHHHH-HH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-----HHHHhCCCCcEEEEEccCCCHHHHHHHHH-HH
Confidence            489999999995 459999999999999999998876432110     01122223345555554443  3344443 22


Q ss_pred             HhccCCCcEEEEeC
Q 042102          222 INALGPKGVLINIG  235 (317)
Q Consensus       222 l~~mk~gavlVN~~  235 (317)
                      .+.+.+=-++||.+
T Consensus        77 ~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          77 EKAFGPVSTLVNNA   90 (251)
T ss_dssp             HHHHSSCCEEEECC
T ss_pred             HHHhCCceEEEecc
Confidence            33333334667664

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=90.20  E-value=0.5  Score=40.86  Aligned_cols=91  Identities=11%  Similarity=0.188  Sum_probs=60.5

Q ss_pred             cccCCeEEEEec---ChhHHHHHHHHhhCC-CEEEEeCCCCCCC------------CCccccCCHHHhcccCCEEEEecc
Q 042102          145 KFTGKSVGILGM---GRIGTAIAKRAEAFD-CIIGYNSRTEKPN------------LNYKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G-~~V~~~~~~~~~~------------~~~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      .+.|++|+++|-   +++..+.+..+..+| +++.+..+..-..            .......++++.++.+|+|....-
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~  230 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence            388999999997   778899999899885 6888776532211            112235689999999998875321


Q ss_pred             CChh----------hhccccHHHHhccCCCcEEEEeC
Q 042102          209 LTEE----------TQHIVNRQVINALGPKGVLINIG  235 (317)
Q Consensus       209 ~~~~----------t~~li~~~~l~~mk~gavlVN~~  235 (317)
                      ..+.          -...++.+.++.++++++|.-+.
T Consensus       231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcL  267 (310)
T d1tuga1         231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCS
T ss_pred             chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCC
Confidence            1110          11235666677777777776554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.05  E-value=0.079  Score=44.60  Aligned_cols=38  Identities=29%  Similarity=0.150  Sum_probs=33.5

Q ss_pred             ccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          144 TKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       144 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ..|.||++.|.|.+ .||+++|+.|...|++|+..+++.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            35889999999984 799999999999999999988864

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.00  E-value=0.11  Score=41.37  Aligned_cols=32  Identities=25%  Similarity=0.216  Sum_probs=29.0

Q ss_pred             eEEEEecChhHHHHHHHHhhCCC-EEEEeCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTE  181 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  181 (317)
                      +|.|||.|..|-..|..|+..|. +|.+++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            59999999999999999999997 699998754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.83  E-value=0.11  Score=41.61  Aligned_cols=60  Identities=17%  Similarity=0.084  Sum_probs=41.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhCCCE--EEEeCCCCCCC----CC-------ccccCCHHHhcccCCEEEEecc
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAFDCI--IGYNSRTEKPN----LN-------YKYYPNLIDLASNCQILVVACS  208 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~G~~--V~~~~~~~~~~----~~-------~~~~~~l~el~~~aDvV~~~lp  208 (317)
                      +||.|.| .|.||+.+++.|...|.+  |....|++...    ..       .....++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            5899999 699999999999988864  55555544221    11       1112345677899998877654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.79  E-value=0.17  Score=41.19  Aligned_cols=33  Identities=12%  Similarity=0.126  Sum_probs=28.8

Q ss_pred             eEEEEecChhHHHHHHHHh--hCCCEEEEeCCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAE--AFDCIIGYNSRTEK  182 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~--~~G~~V~~~~~~~~  182 (317)
                      +|+|||.|..|-..|..|.  .+|++|.+|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            7999999999999999885  47889999987654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.71  E-value=0.15  Score=37.39  Aligned_cols=36  Identities=19%  Similarity=0.064  Sum_probs=29.1

Q ss_pred             CCeEEEEecChhHHHHHHHHh---hCCCEEEEeCCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAE---AFDCIIGYNSRTEKP  183 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~---~~G~~V~~~~~~~~~  183 (317)
                      .+++.|||.|.+|-++|..+.   ..|.+|..+.+.+..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            479999999999999998655   458899888776543

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.49  Score=40.70  Aligned_cols=124  Identities=15%  Similarity=0.156  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-----------EEEE
Q 042102          108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-----------IIGY  176 (317)
Q Consensus       108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-----------~V~~  176 (317)
                      +|=-+++-+++.+|-.                   ++.|...++.|.|.|..|-.+|+.+...+.           +++.
T Consensus         4 Ta~V~lAglinAlki~-------------------gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~l   64 (294)
T d1pj3a1           4 TAAVALAGLLAAQKVI-------------------SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWM   64 (294)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEE
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEE
Confidence            4555677777766533                   346888899999999999999998765432           3777


Q ss_pred             eCCCC----C-C--CCCc----------cccCCHHHhcc--cCCEEEEeccCChhhhccccHHHHh---ccCCCcEEEEe
Q 042102          177 NSRTE----K-P--NLNY----------KYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQVIN---ALGPKGVLINI  234 (317)
Q Consensus       177 ~~~~~----~-~--~~~~----------~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~~l~---~mk~gavlVN~  234 (317)
                      +|+..    . .  ....          ....+|.++++  +.|+++-...    .-++|.++.++   .|.+.+++.=.
T Consensus        65 vD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~~PIIFaL  140 (294)
T d1pj3a1          65 FDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINERPVIFAL  140 (294)
T ss_dssp             EETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCSSCEEEEC
T ss_pred             EeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCCCcEEEEc
Confidence            76531    1 0  0000          01246888876  7787766532    24678888876   45689999999


Q ss_pred             CCCccc---CHHHHHHHHHhCCce
Q 042102          235 GRGLLV---DEHELVSALLQGRLG  255 (317)
Q Consensus       235 ~rg~~v---d~~aL~~al~~g~i~  255 (317)
                      |....-   ..+..++. .+|+..
T Consensus       141 SNPt~~~e~~~~~a~~~-t~grai  163 (294)
T d1pj3a1         141 SNPTAQAECTAEEAYTL-TEGRCL  163 (294)
T ss_dssp             CSSGGGCSCCHHHHHHH-TTTCCE
T ss_pred             cCCCCcCCcCHHHHHhh-ccCceE
Confidence            886542   34444443 445544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.67  E-value=0.16  Score=40.94  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=31.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~  182 (317)
                      .|.+|.|+|.|.+|...+..++.+|+ +|++.++++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            57899999999999999999999998 7888887654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.63  E-value=0.12  Score=43.68  Aligned_cols=40  Identities=20%  Similarity=0.235  Sum_probs=34.6

Q ss_pred             ccccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          142 MTTKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       142 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ....|+||++.|-| .+.||+++|+.|...|++|++.+++.
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            35679999999999 67899999999999999998876653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.60  E-value=0.16  Score=42.06  Aligned_cols=62  Identities=21%  Similarity=0.221  Sum_probs=44.8

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--CCc-----cccCC---HHHhcccCCEEEEec
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--LNY-----KYYPN---LIDLASNCQILVVAC  207 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--~~~-----~~~~~---l~el~~~aDvV~~~l  207 (317)
                      |+||++.|-|. +.||+++|+.|...|++|...+|+.+..  ...     .....   +.+-+.+-|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999997 4599999999999999999998865321  110     11122   334466789888764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.40  E-value=0.18  Score=43.66  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEK  182 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~  182 (317)
                      |+|+|||.|..|-.+|..|+..|  .+|.+++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            68999999999999999886544  69999987653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.17  Score=46.12  Aligned_cols=80  Identities=14%  Similarity=0.108  Sum_probs=54.7

Q ss_pred             cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC-------------CCC-----------------c--c---
Q 042102          145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP-------------NLN-----------------Y--K---  188 (317)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~--~---  188 (317)
                      .|++.+|.|||+|.+|..+++.|...|. ++..+|...-.             ..+                 .  .   
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            4688999999999999999999998888 67777753210             000                 0  0   


Q ss_pred             --ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhcc
Q 042102          189 --YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL  225 (317)
Q Consensus       189 --~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~m  225 (317)
                        .....+++++++|+|+.++- +.+++..+++.-+...
T Consensus       114 ~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~  151 (426)
T d1yovb1         114 NKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLL  151 (426)
T ss_dssp             SCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred             ccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhh
Confidence              01123467899998887765 5556777777665443

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.22  E-value=0.15  Score=39.78  Aligned_cols=37  Identities=16%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  183 (317)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence            57899999999999999999999997 57777765543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=89.01  E-value=0.13  Score=41.00  Aligned_cols=84  Identities=12%  Similarity=0.161  Sum_probs=52.1

Q ss_pred             cCCeEEEE--ecChhHHHHHHHHhhCCCEEEEeCCCCCCC---------CCccc--------cCCH----HHhc----cc
Q 042102          147 TGKSVGIL--GMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---------LNYKY--------YPNL----IDLA----SN  199 (317)
Q Consensus       147 ~g~~vgIi--G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~--------~~~l----~el~----~~  199 (317)
                      .|.++.|+  |.|.+|+...+.++.+|++|+..-++....         .++..        ..++    .++.    ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            47889998  679999999999999999988765443221         11110        0111    1111    23


Q ss_pred             CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                      .|+++-++.  .++    -...++.|+++..+|.+|.
T Consensus       108 vdvv~D~vg--~~~----~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         108 AKLALNCVG--GKS----STGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             EEEEEESSC--HHH----HHHHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCC--cch----hhhhhhhhcCCcEEEEECC
Confidence            677666643  111    1456778888888888763

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.97  E-value=0.24  Score=37.96  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=32.6

Q ss_pred             ccccCCeEEEE--ecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          144 TKFTGKSVGIL--GMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       144 ~~l~g~~vgIi--G~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +...++.+.|+  |.|.||-++|..|..+|++|.+..+...
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            34456777777  8899999999999999999999887653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.94  E-value=0.29  Score=42.48  Aligned_cols=61  Identities=13%  Similarity=0.190  Sum_probs=43.3

Q ss_pred             cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCC-------cc--cc---CCHHHhcccCCEEEEec
Q 042102          147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN-------YK--YY---PNLIDLASNCQILVVAC  207 (317)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-------~~--~~---~~l~el~~~aDvV~~~l  207 (317)
                      .+++|.|.| .|-||+.+++.|...|.+|+++|+.......       ..  ..   ..+.++++.+|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            788999998 8999999999999999999998764432211       00  01   13445577899776554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.81  E-value=0.2  Score=41.19  Aligned_cols=35  Identities=14%  Similarity=0.035  Sum_probs=30.9

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP  183 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  183 (317)
                      .+|.|||.|..|-.+|..|+..|. +|.++++.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            479999999999999999999996 89898876543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.80  E-value=0.18  Score=39.99  Aligned_cols=32  Identities=13%  Similarity=0.045  Sum_probs=29.7

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      |.|||.|..|...|..|+..|.+|+++++...
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            89999999999999999999999999998654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=88.69  E-value=0.2  Score=41.88  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             ccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          146 FTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      |.||++.|-| -+.||+++|+.|...|++|...+++.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            7899999998 568999999999999999999888754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.66  E-value=0.19  Score=43.46  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             ccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          146 FTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .+||+|.|.| .|-||+.+++.|...|.+|.+++|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            5789999999 788999999999999999999988654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.38  E-value=0.21  Score=42.09  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=32.9

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|.||++.|-|.+ .||+++|+.|...|++|+..+++.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4899999999965 599999999999999999888764

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.34  E-value=3.7  Score=32.82  Aligned_cols=151  Identities=17%  Similarity=0.176  Sum_probs=81.8

Q ss_pred             cCCeEEEEecC---------hhHHHHHHHHhhCCCEEEEeCCCCCCCC---Ccc--------------------------
Q 042102          147 TGKSVGILGMG---------RIGTAIAKRAEAFDCIIGYNSRTEKPNL---NYK--------------------------  188 (317)
Q Consensus       147 ~g~~vgIiG~G---------~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~--------------------------  188 (317)
                      .||+|.|| .|         .+...+.+.++..|.+|.+.|.......   ...                          
T Consensus         1 ~~mKiLiI-~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (230)
T d2qwxa1           1 AGKKVLIV-YAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRS   79 (230)
T ss_dssp             CCCEEEEE-ECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTC
T ss_pred             CCCEEEEE-EeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhccc
Confidence            36676666 33         3456677778888999888775432211   000                          


Q ss_pred             cc---CCHHHhcccCCEEEEeccC-----ChhhhccccHH-------------HHhccCCCcEEEEeCCCccc-------
Q 042102          189 YY---PNLIDLASNCQILVVACSL-----TEETQHIVNRQ-------------VINALGPKGVLINIGRGLLV-------  240 (317)
Q Consensus       189 ~~---~~l~el~~~aDvV~~~lp~-----~~~t~~li~~~-------------~l~~mk~gavlVN~~rg~~v-------  240 (317)
                      ..   ....+.+..||.|++..|.     +...++.|++=             .-..++....++-+++|...       
T Consensus        80 ~~~di~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l~~kk~~~i~t~g~~~~~~~~~g  159 (230)
T d2qwxa1          80 LASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTG  159 (230)
T ss_dssp             BCHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTGGGSTTS
T ss_pred             ccHHHHHHHHHHHhCCEEEEEeCcccccCCHHHHHHHHHhcccCcccccCCCCCcccccCCeEEEEeccCCchhhccccc
Confidence            00   1233568889999999995     45566666541             11234444444444454422       


Q ss_pred             ---CHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCC
Q 042102          241 ---DEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPL  312 (317)
Q Consensus       241 ---d~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  312 (317)
                         ....+...+...-....++++.             +.+.+ -.....+.+..+++.+...+.+.+....+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~G~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  220 (230)
T d2qwxa1         160 VNGDSRYFLWPLQHGTLHFCGFKVL-------------APQIS-FAPEIASEEERKGMVAAWSQRLQTIWKEEPI  220 (230)
T ss_dssp             TTCCHHHHHHHHHCCCCCTTTCEEC-------------CCEEE-CCTTTSCHHHHHHHHHHHHHHHHTGGGCCCC
T ss_pred             ccccHHHHHHHHHHHHHHhCCCeEc-------------ceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence               2234444444333331111111             11111 1123446777888888888999888877764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=88.32  E-value=0.17  Score=42.54  Aligned_cols=36  Identities=28%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             ccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCC
Q 042102          146 FTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       146 l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |+||++.|-|.+. ||+++|+.|...|++|+..+++.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            7899888888765 99999999999999999988864

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=88.23  E-value=0.14  Score=40.65  Aligned_cols=106  Identities=17%  Similarity=0.165  Sum_probs=58.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC--CccccCC----H-HHhcccCCEEEEeccCChhhhcccc---
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL--NYKYYPN----L-IDLASNCQILVVACSLTEETQHIVN---  218 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~----l-~el~~~aDvV~~~lp~~~~t~~li~---  218 (317)
                      ++|||=|||+||+.+.+.+..-+.+|.+.+.......  ....+++    + .++-...|.+++    +...-.+..   
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKD   76 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCC
Confidence            4799999999999999988777788776653322110  0000111    1 112233444443    111222222   


Q ss_pred             HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEe
Q 042102          219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGL  259 (317)
Q Consensus       219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~l  259 (317)
                      .+.+..-+-|.-+|==+.|.-.+.+.+..-++.| .....+
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkVii  116 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVII  116 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             hHHCcccccCCceeEeccccccchHHhhhhhccc-cceeee
Confidence            2333333345555556788888888888888765 343444

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.16  E-value=0.16  Score=42.55  Aligned_cols=37  Identities=27%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEe-CCC
Q 042102          144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYN-SRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~-~~~  180 (317)
                      +.|.||++.|-|.+. ||+++|+.|...|++|++. +++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            469999999998765 9999999999999998764 443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.13  E-value=0.19  Score=39.05  Aligned_cols=30  Identities=23%  Similarity=0.181  Sum_probs=26.0

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEE
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGY  176 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~  176 (317)
                      .+++|.|||.|.+|-++|..|+.+|.+|.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEE
Confidence            367999999999999999999999976433

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.05  E-value=0.25  Score=41.30  Aligned_cols=37  Identities=19%  Similarity=0.167  Sum_probs=32.0

Q ss_pred             ccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          146 FTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       146 l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      +.||++.|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   38 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   38 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            368999999884 5999999999999999999888654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.85  E-value=0.16  Score=40.08  Aligned_cols=35  Identities=23%  Similarity=0.106  Sum_probs=30.9

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +++.|.|||.|..|-..|..++.+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999998887543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.82  E-value=0.11  Score=43.68  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=27.1

Q ss_pred             CeEEEE-ec-ChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          149 KSVGIL-GM-GRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       149 ~~vgIi-G~-G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      |||.+| |. +.||+++|+.|...|++|...+|+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            456555 55 45999999999999999999988653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.67  E-value=0.15  Score=42.77  Aligned_cols=32  Identities=19%  Similarity=0.149  Sum_probs=30.1

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +|.|||.|..|..+|..|+..|.+|.++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999999999865

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.66  E-value=0.37  Score=38.17  Aligned_cols=39  Identities=10%  Similarity=0.084  Sum_probs=33.3

Q ss_pred             cccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          145 KFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .-.|.+|.|.| .|.+|....+.++.+|++|+...+++++
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            34688999999 5999999999999999999888776544

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=0.58  Score=38.72  Aligned_cols=36  Identities=19%  Similarity=0.108  Sum_probs=31.8

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |.||++.|.|. +.||+++|+.|...|++|+..+|++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            88999888765 5899999999999999999988864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.56  E-value=0.28  Score=40.37  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .||+|.|.|. |.||+++|+.|...|++|...++....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999998 569999999999999999888765443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.38  E-value=0.22  Score=41.26  Aligned_cols=32  Identities=22%  Similarity=0.147  Sum_probs=29.5

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      -|.|||.|.+|..+|..|...|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            39999999999999999999999999999754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.27  E-value=0.14  Score=39.70  Aligned_cols=60  Identities=12%  Similarity=-0.040  Sum_probs=40.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHhhC---CC----EEEEeCCCCCCC-----------C------CccccCCHHHhcccCCEE
Q 042102          149 KSVGILG-MGRIGTAIAKRAEAF---DC----IIGYNSRTEKPN-----------L------NYKYYPNLIDLASNCQIL  203 (317)
Q Consensus       149 ~~vgIiG-~G~iG~~~a~~l~~~---G~----~V~~~~~~~~~~-----------~------~~~~~~~l~el~~~aDvV  203 (317)
                      .+|.||| .|.+|+.+|-.|..-   |.    .+..+|......           .      ......+..+.++.||+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            4899999 599999999988642   31    455666543211           0      011235788999999999


Q ss_pred             EEecc
Q 042102          204 VVACS  208 (317)
Q Consensus       204 ~~~lp  208 (317)
                      +++..
T Consensus        84 Vitag   88 (154)
T d5mdha1          84 ILVGS   88 (154)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            98753

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.21  E-value=0.19  Score=42.58  Aligned_cols=38  Identities=24%  Similarity=0.284  Sum_probs=33.3

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|+||++-|.|.+ .||+++|+.|...|++|+..+|+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4899999999875 5999999999999999999888653

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.06  E-value=0.11  Score=41.49  Aligned_cols=83  Identities=13%  Similarity=0.244  Sum_probs=54.5

Q ss_pred             CCeEEEEe-cChhHHHHHHHHhhCCCE-EEEeCCCCCCC------CCcc-----ccCCHHHhccc-----CCEEEEeccC
Q 042102          148 GKSVGILG-MGRIGTAIAKRAEAFDCI-IGYNSRTEKPN------LNYK-----YYPNLIDLASN-----CQILVVACSL  209 (317)
Q Consensus       148 g~~vgIiG-~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~------~~~~-----~~~~l~el~~~-----aDvV~~~lp~  209 (317)
                      +.+|.|.| .|.+|+..++.++.+|++ |++...+.+..      .++.     ...++.+.+++     .|+|+-++. 
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-  109 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-  109 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence            47899999 599999999999999985 55544433221      1211     12344444433     888887764 


Q ss_pred             ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102          210 TEETQHIVNRQVINALGPKGVLINIGR  236 (317)
Q Consensus       210 ~~~t~~li~~~~l~~mk~gavlVN~~r  236 (317)
                       .++    -...++.++++..++.+|.
T Consensus       110 -g~~----~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 -GDI----SNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             -HHH----HHHHHTTEEEEEEEEEC--
T ss_pred             -chh----HHHHhhhccccccEEEecc
Confidence             221    2567888999999998863

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.35  Score=41.53  Aligned_cols=37  Identities=24%  Similarity=0.238  Sum_probs=33.4

Q ss_pred             cccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|.||++.|-|.+ .||+++|+.|...|++|++.+|+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5999999999976 499999999999999999988864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.24  Score=39.72  Aligned_cols=30  Identities=20%  Similarity=0.129  Sum_probs=28.0

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      |.|||.|..|...|..++.+|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999988764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.53  E-value=0.36  Score=37.49  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=31.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  183 (317)
                      .|.+|.|+|.|.+|...+..++.+|. +|++.++++++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            57899999999999999999998887 68888876543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=86.49  E-value=0.22  Score=39.10  Aligned_cols=38  Identities=13%  Similarity=0.066  Sum_probs=32.4

Q ss_pred             ccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          146 FTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      ..|.+|.|-| .|.+|....+.++.+|++|+...++.++
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            3566899999 5999999999999999999988776544

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=86.42  E-value=0.17  Score=40.09  Aligned_cols=29  Identities=28%  Similarity=0.457  Sum_probs=25.0

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNS  178 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~  178 (317)
                      +|||=|||+||+.+.+.+...+.+|.+.+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaIN   30 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVN   30 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence            79999999999999999987788776554

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.32  E-value=0.23  Score=34.01  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=31.3

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|.+|.|.|. |.+|....+.++.+|++|++..++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            5778999887 99999999999999999998876654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.23  E-value=0.21  Score=39.67  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=30.0

Q ss_pred             cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      .+.+|.|.|. |.+|+...+.+|.+|++|++..+++++
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k   68 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH
Confidence            4456777665 899999999999999999988776554

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.05  E-value=1  Score=35.68  Aligned_cols=63  Identities=16%  Similarity=0.075  Sum_probs=41.7

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC-cc-ccCCHH----HhcccCCEEEEeccCC
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN-YK-YYPNLI----DLASNCQILVVACSLT  210 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-~~-~~~~l~----el~~~aDvV~~~lp~~  210 (317)
                      -|+|.|.|. |-||+.+++.|...|.  +|....|++..... .. ...++.    .+...+|.|+.|+..+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            379999998 9999999999998886  66666655432211 11 122333    3445579998876544

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=85.97  E-value=0.26  Score=39.11  Aligned_cols=30  Identities=23%  Similarity=0.212  Sum_probs=23.3

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC---CEEEEeC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD---CIIGYNS  178 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~  178 (317)
                      ++|||=|||+||+.+.+.+....   ++|.+.+
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            47999999999999999876433   5666554

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=85.90  E-value=0.37  Score=38.22  Aligned_cols=98  Identities=9%  Similarity=0.115  Sum_probs=59.6

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhh---CCC----EEEEeCCCCCCC-----------C------CccccCCHHHhcccCCE
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEA---FDC----IIGYNSRTEKPN-----------L------NYKYYPNLIDLASNCQI  202 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~---~G~----~V~~~~~~~~~~-----------~------~~~~~~~l~el~~~aDv  202 (317)
                      ..+|.|+|. |.||+.++-+|..   ||.    .+..+|......           .      ......+..+.++.+|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            458999996 9999999998874   553    445566543211           0      11234678899999999


Q ss_pred             EEEeccCC--h---h------hhcccc--HHHHhc-cCCCcEEEEeCCCcccCHHHHHH
Q 042102          203 LVVACSLT--E---E------TQHIVN--RQVINA-LGPKGVLINIGRGLLVDEHELVS  247 (317)
Q Consensus       203 V~~~lp~~--~---~------t~~li~--~~~l~~-mk~gavlVN~~rg~~vd~~aL~~  247 (317)
                      |++.....  +   .      +..++.  .+.+.. .+++++++=++  ..+|.-+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~--NPvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG--NPCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec--CcHHHHHHHH
Confidence            99875321  1   1      111111  122333 45677776665  4688777653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.82  E-value=0.23  Score=39.33  Aligned_cols=35  Identities=14%  Similarity=-0.032  Sum_probs=30.8

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +.++|.|||.|..|-..|..++.+|++|.++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            45789999999999999999999999998887543

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=85.81  E-value=0.94  Score=39.05  Aligned_cols=149  Identities=15%  Similarity=0.122  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhC----CC-------EEEE
Q 042102          108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF----DC-------IIGY  176 (317)
Q Consensus       108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~  176 (317)
                      +|=-+++.+++.+|-.                   ++.|...++.|+|.|..|-.+|+.+...    |+       +++.
T Consensus         4 Ta~V~lAglinAlki~-------------------gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~   64 (308)
T d1o0sa1           4 TASVIVAGLLTCTRVT-------------------KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYL   64 (308)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEE
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEE
Confidence            4445666666665532                   3468888999999999999999987643    32       3777


Q ss_pred             eCCCCC-----CC-C----Cc----cccCCHHHhccc--CCEEEEeccCChhhhccccHHHHhccC---CCcEEEEeCCC
Q 042102          177 NSRTEK-----PN-L----NY----KYYPNLIDLASN--CQILVVACSLTEETQHIVNRQVINALG---PKGVLINIGRG  237 (317)
Q Consensus       177 ~~~~~~-----~~-~----~~----~~~~~l~el~~~--aDvV~~~lp~~~~t~~li~~~~l~~mk---~gavlVN~~rg  237 (317)
                      +|+..-     .. .    .+    ....++.++++.  .++++-+..    ..|+|+++.++.|.   +.+++.=.|..
T Consensus        65 vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~s~----~~g~ft~evv~~Ma~~~~~PIIFaLSNP  140 (308)
T d1o0sa1          65 MDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGAST----VRGAFNEEVIRAMAEINERPIIFALSNP  140 (308)
T ss_dssp             EETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECSS----CTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             EeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHHhccccccEEeccc----ccCCCCHHHHHHHHhhCCCcEEEEccCC
Confidence            775320     10 0    01    112456666553  355554422    35778888887664   88999988876


Q ss_pred             ccc---CHHHHHHHHHhCCceEEEeeCCCCCCCCC----c---ccCCCCceEEcccCC
Q 042102          238 LLV---DEHELVSALLQGRLGGAGLDVFEHEPDVP----E---ELIGLENVVLLPHVA  285 (317)
Q Consensus       238 ~~v---d~~aL~~al~~g~i~ga~lDV~~~EP~~~----~---~L~~~pnvi~tPH~a  285 (317)
                      ..-   ..++.+++ ..|++..+.     .-|.++    .   ..-+..|+++-|=++
T Consensus       141 tp~~E~~~eda~~~-t~G~ai~At-----GSpfp~V~~~Gr~~~p~Q~NN~liFPGIg  192 (308)
T d1o0sa1         141 TSKAECTAEEAYTF-TNGAALYAS-----GSPFPNFELNGHTYKPGQGNNAYIFPGVA  192 (308)
T ss_dssp             GGGCSSCHHHHHHT-TTSCCEEEE-----SSCCCCEEETTEEECCEECCGGGTHHHHH
T ss_pred             CCCCCCCHHHHHhh-ccCcEEEec-----CCCCCCeeecCceecccccceeeeccchh
Confidence            543   23333333 345544332     123222    1   234667888888554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.74  E-value=0.24  Score=41.90  Aligned_cols=37  Identities=32%  Similarity=0.355  Sum_probs=32.8

Q ss_pred             ccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          146 FTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       146 l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      |.||++-|-|.+ .||+++|+.|...|++|...+++.+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            789999999886 5999999999999999999888643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=0.41  Score=35.98  Aligned_cols=36  Identities=22%  Similarity=0.186  Sum_probs=29.8

Q ss_pred             CCeEEEEecChhHHHHHHHH----hhCCCEEEEeCCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRA----EAFDCIIGYNSRTEKP  183 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l----~~~G~~V~~~~~~~~~  183 (317)
                      ++++.|||.|.+|-++|..|    +.+|.+|....+....
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            67999999999999988777    4689999988776543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.51  E-value=0.14  Score=39.73  Aligned_cols=96  Identities=11%  Similarity=0.142  Sum_probs=54.6

Q ss_pred             CCeEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCCCCC-----------C------CccccCCHHHhcccCCE
Q 042102          148 GKSVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTEKPN-----------L------NYKYYPNLIDLASNCQI  202 (317)
Q Consensus       148 g~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~~-----------~------~~~~~~~l~el~~~aDv  202 (317)
                      ..+|.|+|. |.+|+.++-.|...+.       ....++......           .      ......+..+.++.||+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            358999996 9999999999875432       122222211110           0      01124568899999999


Q ss_pred             EEEeccCC--hh-hh-ccc--cH-------HHHhc-cCCCcEEEEeCCCcccCHHHH
Q 042102          203 LVVACSLT--EE-TQ-HIV--NR-------QVINA-LGPKGVLINIGRGLLVDEHEL  245 (317)
Q Consensus       203 V~~~lp~~--~~-t~-~li--~~-------~~l~~-mk~gavlVN~~rg~~vd~~aL  245 (317)
                      |+++.-..  +. ++ .++  |.       ..+.. .+++++++.++.  .+|.-..
T Consensus        84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            99975322  11 11 122  11       12223 456888888753  5765443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.37  E-value=0.33  Score=41.65  Aligned_cols=35  Identities=14%  Similarity=0.078  Sum_probs=31.1

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ....|.|||.|..|-.+|..|+..|.+|.++++..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            34579999999999999999999999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.31  E-value=0.32  Score=41.51  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=29.9

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .+.|||.|..|-.+|..|+..|.+|.+++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            589999999999999999999999999987654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.98  E-value=0.31  Score=35.61  Aligned_cols=36  Identities=22%  Similarity=0.151  Sum_probs=28.5

Q ss_pred             CCeEEEEecChhHHHHHHHHhhCC---CEEEEeCCCCCC
Q 042102          148 GKSVGILGMGRIGTAIAKRAEAFD---CIIGYNSRTEKP  183 (317)
Q Consensus       148 g~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~  183 (317)
                      .+++.|||.|.+|-++|..+..+|   .+|..+.+....
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            468999999999999998777665   468877765543

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.90  E-value=0.81  Score=37.32  Aligned_cols=64  Identities=11%  Similarity=0.091  Sum_probs=44.9

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhh--------------------CCC-EEEEeCCCCCCCCCccccCCHHHhcccCC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEA--------------------FDC-IIGYNSRTEKPNLNYKYYPNLIDLASNCQ  201 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~--------------------~G~-~V~~~~~~~~~~~~~~~~~~l~el~~~aD  201 (317)
                      ...+.|++|.|||.|+.+--+|+.|..                    .|. +|..+.|+......+ ...++.|+....+
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~f-t~~Elre~~~~~~  112 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAF-TIKELREMIQLPG  112 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCC-CHHHHHHHHTCTT
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCC-CchhhhcccccCC
Confidence            345789999999999999999998876                    576 687777655333222 1234667777777


Q ss_pred             EEEEec
Q 042102          202 ILVVAC  207 (317)
Q Consensus       202 vV~~~l  207 (317)
                      +-+..-
T Consensus       113 ~~~~~~  118 (225)
T d1cjca1         113 TRPMLD  118 (225)
T ss_dssp             EEEECC
T ss_pred             Ccceec
Confidence            666543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=84.61  E-value=0.37  Score=39.97  Aligned_cols=59  Identities=10%  Similarity=0.237  Sum_probs=36.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhccc--CCEEEEec
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASN--CQILVVAC  207 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~--aDvV~~~l  207 (317)
                      ++|.|.|. |-||+.+++.|...|..|....+......+......++++++.  .|+|+-+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            57899995 9999999999998887555443332211111112234555654  48766543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.32  E-value=1.1  Score=36.26  Aligned_cols=64  Identities=16%  Similarity=0.131  Sum_probs=43.8

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHh--------------------hCCC-EEEEeCCCCCCCCCccccCCHHHhcccCCE
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAE--------------------AFDC-IIGYNSRTEKPNLNYKYYPNLIDLASNCQI  202 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~--------------------~~G~-~V~~~~~~~~~~~~~~~~~~l~el~~~aDv  202 (317)
                      ..+.|++|.|||.|+.+--+|+.|.                    ..|. +|..+.|+......+ ...++.|+.+..++
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~f-t~~Elre~~~l~~~  113 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAF-TTLELRELADLDGV  113 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCC-CHHHHHHGGGCTTE
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCC-ChhhhhhhcccCCC
Confidence            4578999999999999999998775                    5677 577666654332222 12346677777776


Q ss_pred             EEEecc
Q 042102          203 LVVACS  208 (317)
Q Consensus       203 V~~~lp  208 (317)
                      -...-|
T Consensus       114 ~~~~~~  119 (216)
T d1lqta1         114 DVVIDP  119 (216)
T ss_dssp             EEECCG
T ss_pred             CccCCH
Confidence            665543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.28  E-value=0.43  Score=39.56  Aligned_cols=31  Identities=16%  Similarity=0.143  Sum_probs=28.9

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |.|||.|.+|..+|..|+..|.+|.+.++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999998754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.13  E-value=0.27  Score=39.69  Aligned_cols=34  Identities=12%  Similarity=-0.001  Sum_probs=29.0

Q ss_pred             CeEEEEecChhHHHHHHHHhhCC-------CEEEEeCCCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFD-------CIIGYNSRTEK  182 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~  182 (317)
                      .+|+|||.|..|-+.|..|...|       ++|.+|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999997666       68999987653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.04  E-value=0.59  Score=38.80  Aligned_cols=34  Identities=12%  Similarity=0.064  Sum_probs=27.3

Q ss_pred             eEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          150 SVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       150 ~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      |+.|-|.+. ||+++|++|...|++|...+++.+.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~   36 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQ   36 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            455666554 9999999999999999998886543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=84.00  E-value=0.44  Score=38.76  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=29.3

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      |.|||.|..|...|..|+..|++|.++++...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            88999999999999999999999999987643

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.92  E-value=0.18  Score=42.60  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             cCCeEEEE--ecChhHHHHHHHHhh-CCCEEEEeCCCCC
Q 042102          147 TGKSVGIL--GMGRIGTAIAKRAEA-FDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIi--G~G~iG~~~a~~l~~-~G~~V~~~~~~~~  182 (317)
                      +||+|+||  |-+.||.++|+.|.. .|++|+..+|+.+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            48999999  888999999999875 5899999988754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.84  E-value=0.4  Score=38.46  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=28.9

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      -|.|||.|..|...|..+...|++|.+++...
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            38999999999999999999999999988643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=83.82  E-value=0.41  Score=40.28  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=28.7

Q ss_pred             eEEEEecChhHHHHHHHHhhCCC-EEEEeCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTE  181 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  181 (317)
                      .|.|||.|.+|.++|..|...|. +|.+.++..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999999997 699998764

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.80  E-value=0.45  Score=37.55  Aligned_cols=30  Identities=27%  Similarity=0.264  Sum_probs=24.0

Q ss_pred             eEEEEecChhHHHHHHHHhh---CCCEEEEeCC
Q 042102          150 SVGILGMGRIGTAIAKRAEA---FDCIIGYNSR  179 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~---~G~~V~~~~~  179 (317)
                      +|||=|||+||+.+.+.+..   .+.+|...+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            79999999999999998763   3477766543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.79  E-value=0.66  Score=35.22  Aligned_cols=31  Identities=23%  Similarity=0.241  Sum_probs=26.8

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +|.|||.|.+|-++|..|+. +.+|.++++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            79999999999999999975 67898887654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.64  E-value=0.33  Score=38.78  Aligned_cols=31  Identities=23%  Similarity=0.179  Sum_probs=28.4

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |.|||.|..|...|..++.+|.+|.+++...
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999987643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.60  E-value=0.43  Score=37.68  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=27.7

Q ss_pred             CeEEEEecChhHHHHHHHHhhC--CCEEEEeCCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF--DCIIGYNSRTE  181 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~  181 (317)
                      ++|.|||.|.+|-++|..|+.+  +.+|.++++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999876  45788877643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.46  E-value=0.46  Score=38.07  Aligned_cols=37  Identities=24%  Similarity=0.441  Sum_probs=31.3

Q ss_pred             ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      ..++||+|.|||.|.-|..+|..+..-+.++...-++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4689999999999999999999998888876655443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.34  E-value=0.5  Score=36.48  Aligned_cols=31  Identities=26%  Similarity=0.227  Sum_probs=28.0

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      -|.|||.|.+|-..|..+..+|++|..+++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3789999999999999999999999988764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.19  E-value=0.3  Score=40.86  Aligned_cols=34  Identities=24%  Similarity=0.180  Sum_probs=27.7

Q ss_pred             CCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          148 GKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       148 g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      ||.+.|-|.+ .||+++|+.|...|++|...+|+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5555566655 599999999999999999988864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.16  E-value=0.39  Score=40.41  Aligned_cols=31  Identities=23%  Similarity=0.123  Sum_probs=28.6

Q ss_pred             EEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      |.|||.|..|-..|..|+..|.+|++++.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.97  E-value=0.41  Score=40.13  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=32.7

Q ss_pred             cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      .|+||++.|-|. +.||+++|+.|...|++|...+|+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            478998888886 5899999999999999999988864

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=82.96  E-value=3.4  Score=35.20  Aligned_cols=152  Identities=16%  Similarity=0.168  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhC----C------C-EEEE
Q 042102          108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF----D------C-IIGY  176 (317)
Q Consensus       108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G------~-~V~~  176 (317)
                      +|=-+++.+|+.+|-.                   ++.|...++.|.|.|..|-.+++.+...    |      . +++.
T Consensus         4 TaaV~lAglinAlki~-------------------gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l   64 (298)
T d1gq2a1           4 TASVAVAGLLAALRIT-------------------KNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWM   64 (298)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------TSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEE
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEE
Confidence            4555667777765533                   3468889999999999999999988643    2      1 5777


Q ss_pred             eCCCC-----CCC-CC--------ccccCCHHHhccc--CCEEEEeccCChhhhccccHHHHh---ccCCCcEEEEeCCC
Q 042102          177 NSRTE-----KPN-LN--------YKYYPNLIDLASN--CQILVVACSLTEETQHIVNRQVIN---ALGPKGVLINIGRG  237 (317)
Q Consensus       177 ~~~~~-----~~~-~~--------~~~~~~l~el~~~--aDvV~~~lp~~~~t~~li~~~~l~---~mk~gavlVN~~rg  237 (317)
                      +|+..     +.. ..        .....++.++++.  .++++-...    .-++|+++.++   .|.+.+++.=.|..
T Consensus        65 ~D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~~vkptvliG~s~----~~g~ft~evv~~ma~~~~~PIIFaLSNP  140 (298)
T d1gq2a1          65 VDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAA----IGGAFTQQILQDMAAFNKRPIIFALSNP  140 (298)
T ss_dssp             EETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSC----CTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             EeCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHhhccChheeEeccc----ccCcCCHHHHHHHHhhCCCCEEEEccCC
Confidence            76531     010 00        0123466776653  555555422    23778887776   56689999999876


Q ss_pred             cc---cCHHHHHHHHHhCCceEEEeeCCCCCCC--CCc---ccCCCCceEEcccCC
Q 042102          238 LL---VDEHELVSALLQGRLGGAGLDVFEHEPD--VPE---ELIGLENVVLLPHVA  285 (317)
Q Consensus       238 ~~---vd~~aL~~al~~g~i~ga~lDV~~~EP~--~~~---~L~~~pnvi~tPH~a  285 (317)
                      ..   .+.++.+++-+.+-|.+.+ -  ..+|.  ...   ..-+..|+++-|=++
T Consensus       141 t~~~E~~~~~a~~wt~G~ai~AsG-s--pf~pv~~~~Grs~~pnQ~NN~~~FPGig  193 (298)
T d1gq2a1         141 TSKAECTAEQLYKYTEGRGIFASG-S--PFDPVTLPSGQTLYPGQGNNSYVFPGVA  193 (298)
T ss_dssp             GGGCSSCHHHHHHHTTTCCEEEES-S--CCCCEECTTSCEECCEECCGGGTHHHHH
T ss_pred             CCcCCCCHHHHhhhcccceEEeec-C--CCCCeEecCCeEEecCCCchhhhhhhHH
Confidence            44   2555666655544444221 1  11111  011   133566888888654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.89  E-value=0.86  Score=34.98  Aligned_cols=35  Identities=20%  Similarity=0.083  Sum_probs=28.7

Q ss_pred             cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCC
Q 042102          147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTE  181 (317)
Q Consensus       147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~  181 (317)
                      .+++|.|||.|.+|-..|..+..+|++ |..+.|..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            466899999999999999999999984 66655543

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=82.45  E-value=1.4  Score=35.94  Aligned_cols=145  Identities=14%  Similarity=0.151  Sum_probs=73.9

Q ss_pred             cChhHHHHHHHHhhCCCEEEEeCC-CCCCC-CCcc--ccCC-------HHHhcccCCEEEEeccCChh------------
Q 042102          156 MGRIGTAIAKRAEAFDCIIGYNSR-TEKPN-LNYK--YYPN-------LIDLASNCQILVVACSLTEE------------  212 (317)
Q Consensus       156 ~G~iG~~~a~~l~~~G~~V~~~~~-~~~~~-~~~~--~~~~-------l~el~~~aDvV~~~lp~~~~------------  212 (317)
                      -|.+|.++|+.+..+|++|.++.- ..... ....  ...+       +.+.++++|+++.+....+-            
T Consensus        31 SGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAAvsDf~~~~~~~~k~Kk  110 (223)
T d1u7za_          31 SGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKK  110 (223)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBCCSEEESSCCSSCC--
T ss_pred             cHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhhccceeEeeeechhhhhhhhhhhhhccc
Confidence            489999999999999999976543 22111 1111  1122       33557899988876443221            


Q ss_pred             --------hhccc-cHHHHhcc---C-CCcEEEEeC--CCcccCHHHHHHHHHhCCceEEEeeCCCCC-CCCCc----cc
Q 042102          213 --------TQHIV-NRQVINAL---G-PKGVLINIG--RGLLVDEHELVSALLQGRLGGAGLDVFEHE-PDVPE----EL  272 (317)
Q Consensus       213 --------t~~li-~~~~l~~m---k-~gavlVN~~--rg~~vd~~aL~~al~~g~i~ga~lDV~~~E-P~~~~----~L  272 (317)
                              +-.+. +.+.++.+   + ++.++|=.+  .+.+ .+.+..+..++|--.-++=||.... +...+    -+
T Consensus       111 ~~~~~~~l~L~L~~tpdIL~~l~~~k~~~~~~VGFaaEt~~l-~~~A~~Kl~~K~~D~IvAN~v~~~~~~fgsd~n~v~i  189 (223)
T d1u7za_         111 QATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNV-EEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHL  189 (223)
T ss_dssp             -----CEEEEEEEECCCHHHHHHHCSSSCCEEEEEEEESSSH-HHHHHHHHHHHTCSEEEEEECSSTTSSTTSSEEEEEE
T ss_pred             ccccccccceeeecCHHHHHHHHhhccCCceEEEEeecccch-hhHHHHHHHhcCCCEEEeecccCCCCCcCCCceEEEE
Confidence                    01111 34555443   3 356666553  2322 2334445455555545566665432 33222    24


Q ss_pred             CCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHH
Q 042102          273 IGLENVVLLPHVASATVETRKAMADLVVGNLQAHF  307 (317)
Q Consensus       273 ~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~  307 (317)
                      +...+..-.|.   .|   ...++..+++.|...+
T Consensus       190 i~~~~~~~~~~---~s---K~~iA~~Il~~I~~~~  218 (223)
T d1u7za_         190 FWQDGDKVLPL---ER---KELLGQLLLDEIVTRY  218 (223)
T ss_dssp             EETTEEEEEEE---EE---HHHHHHHHHHHHHHHH
T ss_pred             EECCCeEEcCC---CC---HHHHHHHHHHHHHHHH
Confidence            44333333332   23   3445566666665544

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.22  E-value=0.35  Score=36.04  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=36.4

Q ss_pred             eEEEEecChhHHHHHHHHh-hCCCEEE-EeCCCCCCC----CCcc--ccCCHHHhcc-cCCEEEEecc
Q 042102          150 SVGILGMGRIGTAIAKRAE-AFDCIIG-YNSRTEKPN----LNYK--YYPNLIDLAS-NCQILVVACS  208 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~-~~G~~V~-~~~~~~~~~----~~~~--~~~~l~el~~-~aDvV~~~lp  208 (317)
                      +|.|+|+|.+|+.+++.+. .-|+++. ++|..+...    .+..  ....++++.+ ..++.+.++|
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            7999999999999998764 4577865 455544322    1221  1234555443 3555566666

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.17  E-value=2.7  Score=32.57  Aligned_cols=82  Identities=13%  Similarity=0.015  Sum_probs=56.6

Q ss_pred             cEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCC--CCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102            8 IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAA--AGADAELIESLPKLEIVATCSVGLDKI   85 (317)
Q Consensus         8 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~--~~~~~~~l~~~~~Lk~i~~~~~G~d~i   85 (317)
                      ++|++++..+-..+++..+.|.+..      .    .+.++.+|++++...  .-++++.++++++==+++..|.-=+-|
T Consensus        48 ~~V~v~e~dp~~al~A~~dG~~v~~------~----~~a~~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd~EI  117 (163)
T d1li4a1          48 ARVIITEIDPINALQAAMEGYEVTT------M----DEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEI  117 (163)
T ss_dssp             CEEEEECSCHHHHHHHHHTTCEECC------H----HHHTTTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSSTTSB
T ss_pred             CeeEeeecccchhHHhhcCceEeee------h----hhhhhhccEEEecCCCccchhHHHHHhccCCeEEEEecccccee
Confidence            6778887766666666666676542      1    223566787776443  458899999888888888888877888


Q ss_pred             ChhhHhhCCcEEEe
Q 042102           86 DLARCKEKGIRVAN   99 (317)
Q Consensus        86 d~~~~~~~gI~v~n   99 (317)
                      |++++.+.......
T Consensus       118 d~~~L~~~~~~~~~  131 (163)
T d1li4a1         118 DVKWLNENAVEKVN  131 (163)
T ss_dssp             CHHHHHHHCSEEEE
T ss_pred             cHHHHhhccceeee
Confidence            88888766555544

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=82.13  E-value=0.64  Score=36.52  Aligned_cols=32  Identities=34%  Similarity=0.391  Sum_probs=25.5

Q ss_pred             CeEEEEecChhHHHHHHHHhhC-CCEEEEeCCC
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF-DCIIGYNSRT  180 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~  180 (317)
                      .+|||=|||+||+.+.+.+... .++|.+.+..
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            3799999999999999988765 4677766543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.34  E-value=0.65  Score=37.39  Aligned_cols=32  Identities=31%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      -|.|||.|..|...|..++.+|++|.+++..+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            38899999999999999999999999998644

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.09  E-value=0.63  Score=37.69  Aligned_cols=35  Identities=17%  Similarity=0.056  Sum_probs=29.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCC
Q 042102          149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKP  183 (317)
Q Consensus       149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  183 (317)
                      |++.|-|. +.||+++|+.|...|++|+..+++.+.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            56666665 789999999999999999998877654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=81.03  E-value=0.53  Score=40.54  Aligned_cols=63  Identities=10%  Similarity=0.035  Sum_probs=44.4

Q ss_pred             ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--------------------CCccccCCHHHhcccCCEEE
Q 042102          146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--------------------LNYKYYPNLIDLASNCQILV  204 (317)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------------~~~~~~~~l~el~~~aDvV~  204 (317)
                      -.||+|.|.|. |-||+.+++.|...|++|.+..|+....                    .+.....++++++..+|+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            35999999986 5599999999999999998765543210                    01112245667889999877


Q ss_pred             Eecc
Q 042102          205 VACS  208 (317)
Q Consensus       205 ~~lp  208 (317)
                      .+.-
T Consensus        89 ~~a~   92 (342)
T d1y1pa1          89 HIAS   92 (342)
T ss_dssp             ECCC
T ss_pred             hhcc
Confidence            5543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.00  E-value=0.51  Score=37.81  Aligned_cols=31  Identities=23%  Similarity=0.130  Sum_probs=28.6

Q ss_pred             eEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102          150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRT  180 (317)
Q Consensus       150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  180 (317)
                      -|.|||.|..|...|..++.+|.+|.+++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5899999999999999999999999998754

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=80.85  E-value=0.53  Score=37.20  Aligned_cols=106  Identities=18%  Similarity=0.143  Sum_probs=53.8

Q ss_pred             CeEEEEecChhHHHHHHHHhhC----CCEEEEeCCCCCCCCCc--cccCC----H-HHhcccCCEEEEeccCChhhhccc
Q 042102          149 KSVGILGMGRIGTAIAKRAEAF----DCIIGYNSRTEKPNLNY--KYYPN----L-IDLASNCQILVVACSLTEETQHIV  217 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~--~~~~~----l-~el~~~aDvV~~~lp~~~~t~~li  217 (317)
                      .+|||=|||+||+.+.+.+...    ..+|...+.........  -.+++    + .++-...+.+++    +.....++
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i----~g~~i~i~   77 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVV----NGDKIRVD   77 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE----TTEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEE----CCEEEEEE
Confidence            4799999999999999987532    35666555432221000  00111    0 112223344433    11222333


Q ss_pred             cHH---HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEe
Q 042102          218 NRQ---VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGL  259 (317)
Q Consensus       218 ~~~---~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~l  259 (317)
                      ...   .+..=+-|.=+|==+.|.--+.+.+..-|+.|--+ ..+
T Consensus        78 ~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~Gakk-Vii  121 (173)
T d1obfo1          78 ANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK-VII  121 (173)
T ss_dssp             CCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSE-EEE
T ss_pred             ecCCHHHCcccccccceEEEecccccCHHHHHHHhccCCcc-eEE
Confidence            322   33332234334434467777777888888877554 444

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=80.70  E-value=1.2  Score=32.84  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102          143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE  181 (317)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  181 (317)
                      +...+||+|.|||.|.-+-.-|..|..+.-+|+.+-|..
T Consensus        25 ~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          25 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            456889999999999999999999999988998776654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.41  E-value=0.11  Score=42.00  Aligned_cols=25  Identities=24%  Similarity=0.179  Sum_probs=22.2

Q ss_pred             CeEEEEecChhHHHHHHHHhhCCCE
Q 042102          149 KSVGILGMGRIGTAIAKRAEAFDCI  173 (317)
Q Consensus       149 ~~vgIiG~G~iG~~~a~~l~~~G~~  173 (317)
                      ++|.|||.|.+|-.+|..|+..|.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            5799999999999999999887753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=80.24  E-value=0.48  Score=36.82  Aligned_cols=36  Identities=11%  Similarity=0.060  Sum_probs=30.8

Q ss_pred             cCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCC
Q 042102          147 TGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEK  182 (317)
Q Consensus       147 ~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~  182 (317)
                      .|.+|.|.|.|. +|+.+++.++.+|++|++.+++.+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~   64 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ   64 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchH
Confidence            478999995555 999999999999999999887654