Citrus Sinensis ID: 042155

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
GNLSFYVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccEEccccccEEEEccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccEEcccccccEEEEEEcccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
GNLSFYVSLFRWGWRRDLNVSLVTRrtkgqafqvlanpnisprtndsskkiimVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH
Flexible Loop (DISEMBL)
GNLSFYVSlfrwgwrrdlNVSLVTRRTKgqafqvlanpnisprtndsskkIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH
Low Complexity Region (SEG)
GNLSFYVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH
Disordered region (IsUnstruct)
***SFYVSLFRWGWRRDLNVSLVTRRTKGQAFQVLA*******************************************RQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV*
Disordered Region (DISOPRED)
***********WGWRRDLNV****RRTKGQAF**********************DPLEAKR*******************QIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH
Disordered Region (DISEMBL)
GNLSFYVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH
Disordered Region (DISPRO)
****FYVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISP**NDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GNLSFYVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255587979	145	conserved hypothetical protein [Ricinus	0.896	0.772	0.732	8e-42
388519227	143	unknown [Medicago truncatula]	0.952	0.832	0.663	1e-40
357479873	143	hypothetical protein MTR_4g129320 [Medic	0.952	0.832	0.663	2e-40
357479875	151	hypothetical protein MTR_4g129320 [Medic	0.952	0.788	0.622	3e-38
225445631	144	PREDICTED: uncharacterized protein LOC10	0.928	0.805	0.658	6e-38
356562497	138	PREDICTED: uncharacterized protein LOC10	0.912	0.826	0.627	5e-35
388502414	145	unknown [Lotus japonicus] gi|388512989|g	0.944	0.813	0.581	5e-34
297799178	156	hypothetical protein ARALYDRAFT_491980 [	0.896	0.717	0.626	6e-34
449466127	178	PREDICTED: uncharacterized protein LOC10	0.872	0.612	0.640	9e-34
21592719	157	unknown [Arabidopsis thaliana]	0.984	0.783	0.566	1e-31

>gi|255587979|ref|XP_002534461.1| conserved hypothetical protein [Ricinus communis] gi|223525247|gb|EEF27921.1| conserved hypothetical protein [Ricinus communis]

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 101/116 (87%), Gaps = 4/116 (3%)

Query: 9   LFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQ 68
           + +WG+RRD + S    RTK QAF++LANPN+S +  D  K++IMVDPLEAKRLA KQM+
Sbjct: 33  VVKWGFRRDKDSS---SRTKSQAFRILANPNVSGK-RDFQKEVIMVDPLEAKRLAAKQMK 88

Query: 69  EIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
           EIQAKEKFKRRRQIEAINGAWAMIGLT GLVIEGQTGK+I++QLAGYWS+IVHFF+
Sbjct: 89  EIQAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKSILDQLAGYWSAIVHFFL 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519227|gb|AFK47675.1| unknown [Medicago truncatula]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 97/119 (81%)

Query: 6   YVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANK 65
           + +  +WGWRR+ + S+ + RT+ QAF+VLANPN+S   + S K +IMVDP+EAKRLA K
Sbjct: 24  FPTTVKWGWRREQDASMASNRTQSQAFRVLANPNVSSGKDGSKKDVIMVDPVEAKRLAAK 83

Query: 66  QMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
           QM+ I+AKEK K+RRQIEAINGAWAMIGLT GLVIEGQTGKNII QL  Y+ +IVHFFV
Sbjct: 84  QMEIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQTGKNIITQLQDYFGAIVHFFV 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479873|ref|XP_003610222.1| hypothetical protein MTR_4g129320 [Medicago truncatula] gi|355511277|gb|AES92419.1| hypothetical protein MTR_4g129320 [Medicago truncatula] gi|388516053|gb|AFK46088.1| unknown [Medicago truncatula]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 97/119 (81%)

Query: 6   YVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANK 65
           + +  +WGWRR+ + S+ + RT+ QAF+VLANPN+S   + S K +IMVDP+EAKRLA K
Sbjct: 24  FPTTAKWGWRREQDASMASNRTQSQAFRVLANPNVSSGKDGSKKDVIMVDPVEAKRLAAK 83

Query: 66  QMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
           QM+ I+AKEK K+RRQIEAINGAWAMIGLT GLVIEGQTGKNII QL  Y+ +IVHFFV
Sbjct: 84  QMEIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQTGKNIITQLQDYFGAIVHFFV 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479875|ref|XP_003610223.1| hypothetical protein MTR_4g129320 [Medicago truncatula] gi|355511278|gb|AES92420.1| hypothetical protein MTR_4g129320 [Medicago truncatula]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 97/127 (76%), Gaps = 8/127 (6%)

Query: 6   YVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNI--------SPRTNDSSKKIIMVDPL 57
           + +  +WGWRR+ + S+ + RT+ QAF+VLANPN+        S   + S K +IMVDP+
Sbjct: 24  FPTTAKWGWRREQDASMASNRTQSQAFRVLANPNVYRHIIIQVSSGKDGSKKDVIMVDPV 83

Query: 58  EAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS 117
           EAKRLA KQM+ I+AKEK K+RRQIEAINGAWAMIGLT GLVIEGQTGKNII QL  Y+ 
Sbjct: 84  EAKRLAAKQMEIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQTGKNIITQLQDYFG 143

Query: 118 SIVHFFV 124
           +IVHFFV
Sbjct: 144 AIVHFFV 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445631|ref|XP_002263171.1| PREDICTED: uncharacterized protein LOC100246766 [Vitis vinifera] gi|297736053|emb|CBI24091.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 93/120 (77%), Gaps = 4/120 (3%)

Query: 9   LFRWGWRRDLNVSLVTRRT----KGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLAN 64
            F+ G RR  + SLV  RT    +GQAFQ+LANPN+S    +S K+++MVDPLEAKRLA 
Sbjct: 24  FFQRGLRRGQDASLVIPRTAHSTRGQAFQILANPNVSAGKGNSDKEVVMVDPLEAKRLAA 83

Query: 65  KQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
           KQMQE +AKEK KRRR+IEAINGAWAM+GLT GLVIEG TG  I+ QLAGYW +IV FFV
Sbjct: 84  KQMQEFKAKEKLKRRRRIEAINGAWAMLGLTAGLVIEGHTGNGILAQLAGYWGAIVRFFV 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562497|ref|XP_003549507.1| PREDICTED: uncharacterized protein LOC100811033 [Glycine max]

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 91/118 (77%), Gaps = 4/118 (3%)

Query: 8   SLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQM 67
           +L RWGWR++ + S+V  RT+GQAFQVL    ++     S   ++MVDP+EAKRLA KQM
Sbjct: 25  TLPRWGWRKEQDASIVANRTRGQAFQVL----VASGKEGSKDDVVMVDPVEAKRLAAKQM 80

Query: 68  QEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH 125
           ++I+AKEK KRRRQIEAINGAWAMIGLT GLVIEGQTGK+I+ QL  Y  +IV FFV 
Sbjct: 81  EKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKSILTQLQDYLGTIVSFFVR 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502414|gb|AFK39273.1| unknown [Lotus japonicus] gi|388512989|gb|AFK44556.1| unknown [Lotus japonicus]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 94/122 (77%), Gaps = 4/122 (3%)

Query: 7   VSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPN----ISPRTNDSSKKIIMVDPLEAKRL 62
           +++ +WGW+R+ +VS+V+   + Q+F+VLA  +    +S     S   +IMVDP+EAK+L
Sbjct: 23  LTVVKWGWKREQDVSIVSNTPRSQSFRVLATASNTKVVSSGKAGSKNDVIMVDPVEAKQL 82

Query: 63  ANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHF 122
           A KQM+ I+AKEK KRRRQIEAINGAWAMIGLT GLVIEGQTGKNI+ QL  Y+ +I+HF
Sbjct: 83  AAKQMERIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKNIMTQLQDYFDAIIHF 142

Query: 123 FV 124
           FV
Sbjct: 143 FV 144

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799178|ref|XP_002867473.1| hypothetical protein ARALYDRAFT_491980 [Arabidopsis lyrata subsp. lyrata] gi|297313309|gb|EFH43732.1| hypothetical protein ARALYDRAFT_491980 [Arabidopsis lyrata subsp. lyrata]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 89/115 (77%), Gaps = 3/115 (2%)

Query: 13  GWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSK---KIIMVDPLEAKRLANKQMQE 69
           G RR  +V LV  R +    +VLANPN+SP     +K   ++IMVDPLEAKRLA KQM+E
Sbjct: 39  GLRRHQDVKLVGNRARVGVVRVLANPNVSPPPPGKAKVKKEVIMVDPLEAKRLAGKQMEE 98

Query: 70  IQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
           I+ +EK +RRR+IEAINGAWA+IGLT+GLVIE QTGK I+ QLAGYWS++VH FV
Sbjct: 99  IKGREKQQRRREIEAINGAWAIIGLTIGLVIEAQTGKGILAQLAGYWSAVVHLFV 153

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466127|ref|XP_004150778.1| PREDICTED: uncharacterized protein LOC101212671 [Cucumis sativus] gi|449506717|ref|XP_004162828.1| PREDICTED: uncharacterized LOC101212671 [Cucumis sativus]

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 92/114 (80%), Gaps = 5/114 (4%)

Query: 11  RWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEI 70
           R GW RD   S  TRRT+GQAF++    N+SP  +   K++IMVDPLEAKR+A K+M++I
Sbjct: 69  RLGWSRDAGRS--TRRTRGQAFRI---SNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKI 123

Query: 71  QAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
           +AKEKFKRRRQIEAINGAWAMIGLT GLVIEG+TGK I+ QLA Y+S +++FF+
Sbjct: 124 KAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGRTGKGILAQLADYFSILINFFI 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592719|gb|AAM64668.1| unknown [Arabidopsis thaliana]

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 90/127 (70%), Gaps = 4/127 (3%)

Query: 1   GNLSFYVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSS----KKIIMVDP 56
           G  +   S    G RR  +  LV  RT+    +VLANPN+SP          K++IMVDP
Sbjct: 27  GRFAIPSSSLVKGLRRHQDAKLVGNRTRVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDP 86

Query: 57  LEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYW 116
           LEAKRLA+KQM+EI+ +EK +RRR+IEAINGAWA+IGL +GLVIE QTGK I+ QLAGYW
Sbjct: 87  LEAKRLASKQMEEIKGREKQQRRREIEAINGAWAIIGLMIGLVIEAQTGKGILAQLAGYW 146

Query: 117 SSIVHFF 123
           S++VH F
Sbjct: 147 SAVVHLF 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:505006527	157	AT4G28025 "AT4G28025" [Arabido	0.888	0.707	0.6	4.2e-31

TAIR|locus:505006527 AT4G28025 "AT4G28025" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 69/115 (60%), Positives = 86/115 (74%)

Query:    13 GWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSS----KKIIMVDPLEAKRLANKQMQ 68
             G RR  +  LV  R +    +VLANPN+SP          K++IMVDPLEAKRLA+KQM+
Sbjct:    39 GLRRHQDAKLVGNRARVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDPLEAKRLASKQME 98

Query:    69 EIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFF 123
             EI+ +EK +RRR+IEAINGAWA+IGL +GLVIE QTGK I+ QLAGYWS++VH F
Sbjct:    99 EIKGREKQQRRREIEAINGAWAIIGLMIGLVIEAQTGKGILAQLAGYWSAVVHLF 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  11 22  0.48    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  120 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.34u 0.15s 15.49t   Elapsed:  00:00:01
  Total cpu time:  15.34u 0.15s 15.49t   Elapsed:  00:00:01
  Start:  Thu May  9 18:37:25 2013   End:  Thu May  9 18:37:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016974001 SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (144 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	0.001

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 74  EKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH 125
           E FKR R+ E  +G WAM+   +G ++     K         W       + 
Sbjct: 4   ETFKRYREAELKHGRWAMLA-VLGALVPELLTKLGGVAGEPAWFEAGGPLLP 54

Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PHA02337	35	putative high light inducible protein	99.45
PLN00014	250	light-harvesting-like protein 3; Provisional	99.4
PLN00084	214	photosystem II subunit S (PsbS); Provisional	99.07
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.87
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	98.83
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	98.77
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	98.73
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	98.69
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	98.69
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.66
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	98.66
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	98.6
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.59
PLN00187	286	photosystem II light-harvesting complex II protein	98.57
PLN00171	324	photosystem light-harvesting complex -chlorophyll	98.57
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.56
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.41
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	98.39
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.38
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	98.32
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	98.28
PLN00187	286	photosystem II light-harvesting complex II protein	98.27
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	98.24
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	98.23
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	98.22
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	98.17
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	98.13
PLN00171	324	photosystem light-harvesting complex -chlorophyll	98.08
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	98.03
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	98.02
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	97.35
PLN02449	485	ferrochelatase	90.94
KOG2942	361	consensus Uncharacterized conserved protein [Funct	84.16

>PHA02337 putative high light inducible protein

Probab=99.45  E-value=5.2e-14  Score=85.66  Aligned_cols=32  Identities=31%  Similarity=0.350  Sum_probs=29.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhCchHHH
Q 042155           79 RRQIEAINGAWAMIGLTVGLVIEGQTGKNIIE  110 (125)
Q Consensus        79 ~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~  110 (125)
                      ++++|+||||+|||||++++++|+.||++|+.
T Consensus         2 t~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG   33 (35)
T PHA02337          2 TPEAEIFNGWLAMIGFVAAVGAYATTGQIIPG   33 (35)
T ss_pred             ccHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence            46799999999999999999999999999863

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=99.40  E-value=2.4e-13  Score=111.45  Aligned_cols=45  Identities=22%  Similarity=0.550  Sum_probs=42.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHhhhhc
Q 042155           80 RQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV  124 (125)
Q Consensus        80 ~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~~~~~~~  124 (125)
                      .++|++|||+|||||++++++|++||+++++|++++++.++.|++
T Consensus       160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k~llfv~  204 (250)
T PLN00014        160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVT  204 (250)
T ss_pred             chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhHHHHHHH
Confidence            569999999999999999999999999999999999999988764

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=99.07  E-value=1.3e-10  Score=92.81  Aligned_cols=38  Identities=29%  Similarity=0.538  Sum_probs=35.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHH
Q 042155           77 KRRRQIEAINGAWAMIGLTVGLVIEGQT-GKNIIEQLAG  114 (125)
Q Consensus        77 ~~~~~~E~~NGR~AMiGf~~~l~~E~~T-G~~il~Ql~~  114 (125)
                      ..++..|+||||+||+||+++++.|.+| |+|+++|+..
T Consensus       133 rEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~  171 (214)
T PLN00084        133 REQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG  171 (214)
T ss_pred             HhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence            4567889999999999999999999999 9999999864

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.87  E-value=1.8e-09  Score=80.31  Aligned_cols=43  Identities=33%  Similarity=0.349  Sum_probs=37.9

Q ss_pred             eeCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCc
Q 042155           53 MVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGK  106 (125)
Q Consensus        53 ~~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~  106 (125)
                      .|||+++....           .+++.|++|++|||+||+|++..++.|+.++.
T Consensus        14 gfDPlgl~~~~-----------~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~   56 (156)
T PF00504_consen   14 GFDPLGLSSDP-----------DFAWYREAELKHGRVAMLAFVGALVQEAGTGF   56 (156)
T ss_dssp             SSSTTTTTTSH-----------HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred             CCChhhcccch-----------hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence            39999998643           56888999999999999999999999999875

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=98.83  E-value=6e-09  Score=85.77  Aligned_cols=59  Identities=20%  Similarity=0.119  Sum_probs=47.2

Q ss_pred             ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155           50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS  118 (125)
Q Consensus        50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~  118 (125)
                      .|..  |||++... +.+++         ++.+..|+.||||||++++..++.|.+||+++++++..++..
T Consensus       179 yPGd~~FDPlGl~~-d~~~~---------~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hlad  239 (252)
T PLN00147        179 YPGGPLFNPLGLAK-DIENA---------HDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSD  239 (252)
T ss_pred             CcccccCCccccCC-CHHHH---------HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcC
Confidence            4554  89999863 22222         444567999999999999999999999999999999887764

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=98.77  E-value=9.9e-09  Score=84.05  Aligned_cols=59  Identities=22%  Similarity=0.202  Sum_probs=44.7

Q ss_pred             ccee-eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-HhhCchHHHHHHHHHHH
Q 042155           50 KIIM-VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIE-GQTGKNIIEQLAGYWSS  118 (125)
Q Consensus        50 ~~~~-~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E-~~TG~~il~Ql~~~~~~  118 (125)
                      .|.. |||++... +++++         ++.+..|+.|||+||++|+..++.| .+||++++++|..++..
T Consensus       166 yPGd~FDPlGl~k-d~~~~---------~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hlad  226 (243)
T PLN00099        166 YPGGAFDPLGYSK-DPKKF---------EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD  226 (243)
T ss_pred             CCCCcCCcccccC-CHHHH---------HHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcC
Confidence            3443 89998753 33333         3344569999999999999999998 57999999999887653

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=98.73  E-value=1.6e-08  Score=83.84  Aligned_cols=59  Identities=24%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155           50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS  117 (125)
Q Consensus        50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~  117 (125)
                      -|..  |||+...+.+.++.         ++.+..|+.|||+||++++..++.+.+||++++++|..++.
T Consensus       193 yPGg~~FDPlgl~~~d~~~~---------~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hla  253 (267)
T PLN00098        193 YPGGLWFDPMMWGRGSPEPV---------MVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLA  253 (267)
T ss_pred             CCCCccCCcccCCCCCHHHH---------HHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhc
Confidence            3554  89999865444444         33345699999999999999999999999999999987664

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=98.69  E-value=1e-08  Score=82.08  Aligned_cols=52  Identities=19%  Similarity=0.137  Sum_probs=40.8

Q ss_pred             Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155           49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII  109 (125)
Q Consensus        49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il  109 (125)
                      +.|.+  +||++..+.+.+++         ++.+..|+.||||||+|++..++.|.+||++++
T Consensus       154 ~~PGd~gfdplgl~~~d~~~~---------~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~  207 (209)
T PLN00089        154 RTPGDFGFDLLALYPKDAAKM---------EKKKDKELKNGRLAMVAIGGIATGSAITGHGFP  207 (209)
T ss_pred             CCCCCcCccccccCCCCHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence            44555  79998765444444         344567999999999999999999999999875

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=98.69  E-value=2.1e-08  Score=83.02  Aligned_cols=59  Identities=25%  Similarity=0.164  Sum_probs=46.1

Q ss_pred             ccee-eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155           50 KIIM-VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS  118 (125)
Q Consensus        50 ~~~~-~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~  118 (125)
                      -|.. |||+.... +.+++         ++.+..|+.||||||++++..++.|.+||++++++|..++..
T Consensus       186 yPG~~FDPlGl~~-d~~~~---------~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hlad  245 (262)
T PLN00025        186 YPGGSFDPLGLAD-DPDTF---------AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD  245 (262)
T ss_pred             CCcccCCccccCC-CHHHH---------HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcC
Confidence            3443 89998753 23333         344566999999999999999999999999999999877653

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.66  E-value=2.4e-08  Score=82.59  Aligned_cols=55  Identities=22%  Similarity=0.249  Sum_probs=45.0

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS  118 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~  118 (125)
                      |||+.... +.++         +++.+..|+.||||||++++..++.|.+||++++++|..++..
T Consensus       195 fDPlGl~~-~~e~---------~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hlad  249 (262)
T PLN00048        195 FNPLGFGK-DEKS---------MKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLAD  249 (262)
T ss_pred             cCcccccc-chHH---------HHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcC
Confidence            89999854 2222         3455667999999999999999999999999999999877653

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=98.66  E-value=1.9e-08  Score=82.71  Aligned_cols=49  Identities=27%  Similarity=0.289  Sum_probs=41.4

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS  117 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~  117 (125)
                      |||++...   ++|            +..|+.|||+||++|+..++.+.+||++++++|..++.
T Consensus       150 FDPLGl~~---~~~------------K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hla  198 (246)
T PLN00100        150 FDPTGMDS---PEM------------KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMA  198 (246)
T ss_pred             CCcccccH---HHH------------HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhcc
Confidence            89998752   222            35699999999999999999999999999999987654

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=98.60  E-value=6e-08  Score=79.66  Aligned_cols=55  Identities=20%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS  118 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~  118 (125)
                      |||+.... +.++         +++.+..|+.|||+||++++..++.+..||++++++|..++..
T Consensus       182 FDPlgl~~-d~~~---------~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~Hlad  236 (244)
T PLN00097        182 FDKFGWAK-DEKK---------AAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLAD  236 (244)
T ss_pred             CCccccCC-CHHH---------HHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcC
Confidence            99999753 2222         3455677999999999999999999999999999999887653

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.59  E-value=3.1e-08  Score=81.57  Aligned_cols=51  Identities=27%  Similarity=0.308  Sum_probs=42.8

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS  118 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~  118 (125)
                      ||||++...  +++            +..|+-|||+||++|+..++.+.+||++++++|..++..
T Consensus       189 FDPLgl~~~--~~~------------k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hlad  239 (250)
T PLN00101        189 FNPLNFAPT--EEA------------KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD  239 (250)
T ss_pred             cCccCCCcc--HHH------------HHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcC
Confidence            999998642  222            345999999999999999999999999999999887754

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=98.57  E-value=8.8e-08  Score=80.25  Aligned_cols=58  Identities=21%  Similarity=0.091  Sum_probs=46.0

Q ss_pred             ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155           50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS  117 (125)
Q Consensus        50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~  117 (125)
                      -|..  |||++... +.++         +++.+..|+.||||||++++..++.+.+||+++++.+..++.
T Consensus       214 yPGg~~FDPlGl~~-d~e~---------~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hla  273 (286)
T PLN00187        214 YPGGKFFDPLGLAA-DPEK---------KETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS  273 (286)
T ss_pred             CCccccccccccCC-CHHH---------HHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            3544  89999853 2222         344567799999999999999999999999999999987765

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=98.57  E-value=8.9e-08  Score=81.49  Aligned_cols=55  Identities=24%  Similarity=0.262  Sum_probs=44.3

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS  118 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~  118 (125)
                      |||++... +.+++         ++.+..|+.|||+||++++..++.|.+||+++++++..++..
T Consensus       258 FDPLGl~~-d~~~~---------~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hlad  312 (324)
T PLN00171        258 FDPLGLSK-DPVAF---------EDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSD  312 (324)
T ss_pred             CCccccCC-CHHHH---------HHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcC
Confidence            89998753 22233         344566999999999999999999999999999999877653

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.56  E-value=4.1e-08  Score=73.06  Aligned_cols=43  Identities=21%  Similarity=0.120  Sum_probs=32.2

Q ss_pred             Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 042155           49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIE  101 (125)
Q Consensus        49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E  101 (125)
                      ..|..  +||+... .+.++.         ++.+.+|++|||+|||||+..++.|
T Consensus       111 ~~pG~~~~dplgl~-~~~~~~---------~~~~~~El~NGRlAMla~~g~~~~e  155 (156)
T PF00504_consen  111 RYPGDLGFDPLGLA-KDPEEK---------EFMQLAELKNGRLAMLAFAGFVAQE  155 (156)
T ss_dssp             SSSSSSSSSTSSTS-SSCHSH---------HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccccccchhhhh-hhhhhh---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444  7999776 333333         5667889999999999999998887

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.41  E-value=1.4e-07  Score=77.64  Aligned_cols=49  Identities=37%  Similarity=0.368  Sum_probs=39.2

Q ss_pred             cee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155           51 IIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII  109 (125)
Q Consensus        51 ~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il  109 (125)
                      |.+  |||+..... .         +.+++.+.+|++||||||+|++..++.|.+|+.+++
T Consensus        71 PGD~GFDPlGl~~d-~---------~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~  121 (250)
T PLN00101         71 PGDNGFDPLGLAED-P---------ENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII  121 (250)
T ss_pred             CCccCCCccccCCC-H---------HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence            444  899988531 1         224667889999999999999999999999988765

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=98.39  E-value=2.3e-07  Score=77.01  Aligned_cols=50  Identities=26%  Similarity=0.208  Sum_probs=39.4

Q ss_pred             ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155           50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII  109 (125)
Q Consensus        50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il  109 (125)
                      -|.+  |||+.....          .+.+++.+++|++||||||+|++..++.|.+++.+++
T Consensus        79 ~pGD~GFDPlgl~~~----------~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~  130 (267)
T PLN00098         79 LPGDFGFDPLGLGSD----------PELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFI  130 (267)
T ss_pred             CCCCCCcCccccCCC----------HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcc
Confidence            3554  899998531          1234677899999999999999999999999876654

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.38  E-value=1.7e-07  Score=77.59  Aligned_cols=57  Identities=21%  Similarity=0.102  Sum_probs=39.5

Q ss_pred             Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHH
Q 042155           49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIE  110 (125)
Q Consensus        49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~  110 (125)
                      .-|.+  |||+....   .+..  ....+.++.+++|++||||||+|++..++.|++++.+++.
T Consensus        58 ~lPGD~GFDPlGL~~---p~~~--~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~  116 (262)
T PLN00048         58 TLPGDFGFDPLGLSD---PEGA--GGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP  116 (262)
T ss_pred             CCCCccCCCccccCC---cccc--ccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence            34444  89998851   1100  0011224556899999999999999999999999877754

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=98.32  E-value=5.4e-07  Score=71.87  Aligned_cols=28  Identities=29%  Similarity=0.213  Sum_probs=25.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhCch
Q 042155           80 RQIEAINGAWAMIGLTVGLVIEGQTGKN  107 (125)
Q Consensus        80 ~~~E~~NGR~AMiGf~~~l~~E~~TG~~  107 (125)
                      +..|+.|||+||||+++.++.|.++|.-
T Consensus       169 ~~~EL~NGRLAMiai~G~~~qe~l~g~~  196 (202)
T PLN00120        169 RAIELNQGRAAQMGILALMVHEQLGVEL  196 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            4679999999999999999999999963

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=98.28  E-value=3.8e-07  Score=75.02  Aligned_cols=50  Identities=28%  Similarity=0.282  Sum_probs=38.9

Q ss_pred             Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchH
Q 042155           49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNI  108 (125)
Q Consensus        49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~i  108 (125)
                      .-|.+  |||+.... +         .+.+++.+++|++||||||+|++..++.|++++.++
T Consensus        60 ~~pGD~GfDPlGl~~-~---------~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~  111 (244)
T PLN00097         60 SLPCDYGFDPLNLGA-D---------PEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM  111 (244)
T ss_pred             CCCCCCCCCccccCc-C---------HHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence            34444  89998752 1         123467789999999999999999999999987654

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=98.27  E-value=4.7e-07  Score=75.95  Aligned_cols=33  Identities=36%  Similarity=0.543  Sum_probs=29.8

Q ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCc
Q 042155           74 EKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGK  106 (125)
Q Consensus        74 ~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~  106 (125)
                      ..+++.+++|++||||||+|++..++.|+++|.
T Consensus       128 f~l~r~REaELiHGRwAMLAvaG~lvpEll~G~  160 (286)
T PLN00187        128 FGLQRFRECELIHGRWAMLATLGALSVEALTGV  160 (286)
T ss_pred             hHHHHHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence            347889999999999999999999999998764

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=98.24  E-value=6.1e-07  Score=74.24  Aligned_cols=51  Identities=27%  Similarity=0.281  Sum_probs=39.6

Q ss_pred             ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHH
Q 042155           50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIE  110 (125)
Q Consensus        50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~  110 (125)
                      .|.+  |||+.... +.+         .+++.+++|++||||||+|++..++.|.+||..+++
T Consensus        74 ~PGd~GFDPlgl~~-d~e---------~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~  126 (255)
T PLN00170         74 LPGDYGFDPLGLGK-DPA---------FLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE  126 (255)
T ss_pred             CCCCCCcCccccCC-CHH---------HHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence            3444  89998742 122         246667889999999999999999999999987664

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=98.23  E-value=8e-07  Score=73.52  Aligned_cols=57  Identities=23%  Similarity=0.243  Sum_probs=38.5

Q ss_pred             eCcchhhhhhHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQ-AKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLA  113 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~-~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~  113 (125)
                      ||||+......  ...|. ..+++++.+..|+-|||+||++|+..++ ++.||++.++.|+
T Consensus       197 FDPLGl~~~~~--~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~-Qa~~g~~p~~~l~  254 (255)
T PLN00170        197 FDPLGLAGTVK--DGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYF-EAGQGKTPLGALG  254 (255)
T ss_pred             cCccccccccc--cccccCCHHHHHHHHHHHHhhhHHHHHHHHhHhe-eeccCCCchhhhc
Confidence            99999764211  00000 1123355667799999999999995555 5589999998874

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=98.22  E-value=6.3e-07  Score=74.31  Aligned_cols=45  Identities=27%  Similarity=0.399  Sum_probs=36.2

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNI  108 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~i  108 (125)
                      |||+.... +.         +.+++.+++|++||||||+|++..++.|.+++.++
T Consensus        76 fDPlGls~-dp---------~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~  120 (262)
T PLN00025         76 WDTAGLSA-DP---------ETFARNRELEVIHARWAMLGALGCVTPELLAKNGV  120 (262)
T ss_pred             CCcccccc-CH---------HHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence            89998752 11         23467788999999999999999999999986554

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=98.17  E-value=1.1e-06  Score=72.40  Aligned_cols=49  Identities=22%  Similarity=0.152  Sum_probs=37.5

Q ss_pred             Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCch
Q 042155           49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKN  107 (125)
Q Consensus        49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~  107 (125)
                      .-|.+  |||+.... +.         +.+++.+++|+.||||||+|++..++.|.++..+
T Consensus        61 ~~pGD~GFDPlgl~~-d~---------~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g  111 (252)
T PLN00147         61 TLAGDFGFDPLGLGE-DP---------ESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG  111 (252)
T ss_pred             CCCCccCCCcccccC-CH---------HHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence            33444  89998742 11         1246778899999999999999999999987654

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=98.13  E-value=2.2e-06  Score=68.75  Aligned_cols=42  Identities=19%  Similarity=0.131  Sum_probs=34.5

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT  104 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T  104 (125)
                      |||+.+.....+         .+++.|.+|+.|||+||++++..++.|.++
T Consensus        59 fDPlgl~~~~~~---------~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~  100 (209)
T PLN00089         59 FDPLGLAEKVEE---------FLPWFRESELKHGRAAMLAVAGFIAPDFVR  100 (209)
T ss_pred             cCCccCCCCCHH---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence            899997653222         246778999999999999999999999876

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=98.08  E-value=2e-06  Score=73.31  Aligned_cols=44  Identities=16%  Similarity=0.152  Sum_probs=35.7

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCch
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKN  107 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~  107 (125)
                      |||+.+.. +         .+.+++.+++|+.||||||+|++..++.|++++.+
T Consensus       133 FDPLGL~~-d---------p~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g  176 (324)
T PLN00171        133 FDIAGLGK-D---------PVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFG  176 (324)
T ss_pred             CCcccccc-C---------HHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCC
Confidence            89999754 1         12357788999999999999999999999977543

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=98.03  E-value=4.2e-06  Score=68.70  Aligned_cols=46  Identities=28%  Similarity=0.339  Sum_probs=35.7

Q ss_pred             Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155           49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT  104 (125)
Q Consensus        49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T  104 (125)
                      .-|.+  |||+.... .         .+.+++.+++|++||||||+|++..++.|+++
T Consensus        60 ~~pgd~GfDPlgls~-~---------~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~  107 (243)
T PLN00099         60 SAPGDFGFDPLRLGE-V---------PENLERYKESELIHCRWAMLAVPGILVPEALG  107 (243)
T ss_pred             CCCcccCCCcccccc-C---------HHHHHHHHHHhccCCcHHHHHHhhHHHHHHhc
Confidence            34443  89999843 1         12356778999999999999999999999864

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=98.02  E-value=3.2e-06  Score=69.74  Aligned_cols=41  Identities=27%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT  104 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T  104 (125)
                      |||+..... .         +.+++.+++|++||||||+|++..++.|+++
T Consensus        58 FDPlgl~~~-~---------~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~   98 (246)
T PLN00100         58 FDPLRLGAN-P---------ETLPYLQEAELMNGRWAMAATAGILFTDAVG   98 (246)
T ss_pred             CCccccCCC-H---------HHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence            899998431 1         2356778999999999999999999999864

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=97.35  E-value=5e-05  Score=60.69  Aligned_cols=40  Identities=30%  Similarity=0.400  Sum_probs=31.7

Q ss_pred             eCcchhhhh-hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 042155           54 VDPLEAKRL-ANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEG  102 (125)
Q Consensus        54 ~dple~k~~-~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~  102 (125)
                      |||+..... ..++         +++.+.+|+.||||||++++..++.|.
T Consensus        47 fDPlgl~~~~~~~~---------~~~~r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         47 FDPLGLVDDGDQEK---------FDRLRYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             CCCCccCCCCCHHH---------HHHHHHHHhhcccHHHHhhccceeecc
Confidence            899997642 2222         356778999999999999999999995

>PLN02449 ferrochelatase

Probab=90.94  E-value=0.1  Score=46.80  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHhhCchHHHH
Q 042155           89 WAMIGLTVGLVIEGQTGKNIIEQ  111 (125)
Q Consensus        89 ~AMiGf~~~l~~E~~TG~~il~Q  111 (125)
                      +||+||++.++.|++||+|++++
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~  485 (485)
T PLN02449        463 AAMLAVLLLLVLEVTSGFGNLHQ  485 (485)
T ss_pred             hHHHHHHHHHHHHHHcCCCcCCC
Confidence            99999999999999999998763

>KOG2942 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.16  E-value=0.075  Score=45.98  Aligned_cols=43  Identities=60%  Similarity=0.920  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHH----HHHHHHHHHhhCch
Q 042155           65 KQMQEIQAKEKFKRRRQIEAINGAWAMIG----LTVGLVIEGQTGKN  107 (125)
Q Consensus        65 k~m~~~~~k~k~~~~~~~E~~NGR~AMiG----f~~~l~~E~~TG~~  107 (125)
                      ++|+|++.+++-++++.-+.+||-||.+|    ..++++.|.+||+.
T Consensus         2 r~~eE~~~R~~q~~r~egca~n~~~~~tGn~~n~pIG~v~~af~~K~   48 (361)
T KOG2942|consen    2 RQMEEIKGREKQQRRREGCAINGAWAITGNYTNLPIGLVIEAFTGKV   48 (361)
T ss_pred             CcccccCCcccccchhccccccchHhhhcccccccceeeeecccccc
Confidence            45777777777778889999999999999    99999999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.99
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.95
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	98.71
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	98.6
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.38
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	98.36
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	98.34
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	98.31
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.27
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	98.1
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	97.9
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	97.41

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.99  E-value=3.7e-10  Score=90.06  Aligned_cols=54  Identities=30%  Similarity=0.288  Sum_probs=45.1

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS  117 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~  117 (125)
                      |||++... ..++         +++.+.+|+.|||+||+||+..++.|.+||+++++|+..++.
T Consensus       161 fdPlgl~~-~~~~---------~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~a  214 (232)
T 2bhw_A          161 FDPLGLAD-DPEA---------FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  214 (232)
T ss_dssp             SCTTCTTC-SHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHH
T ss_pred             cccchhcc-chHH---------HHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            89998763 2222         355677899999999999999999999999999999987764

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.95  E-value=5.4e-10  Score=90.42  Aligned_cols=55  Identities=22%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS  118 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~  118 (125)
                      |||++... +.++         +++.+.+|+.|||+||+||+..++.|.+||+++++|+..++..
T Consensus       178 FDPLGl~~-d~e~---------~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hlad  232 (243)
T 3pl9_A          178 FDPLGLAS-DPEK---------KPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSD  232 (243)
T ss_dssp             GCTTCTTC-STTT---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHC
T ss_pred             hhhccccc-cHHH---------HHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcC
Confidence            89998864 2222         3556788999999999999999999999999999999887753

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=98.71  E-value=5.8e-10  Score=91.36  Aligned_cols=58  Identities=22%  Similarity=0.132  Sum_probs=40.0

Q ss_pred             ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155           50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS  117 (125)
Q Consensus        50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~  117 (125)
                      .|..  |||+..... .++         +++.+.+|+.|||+||+||+..++.|.+||+++++|+..++.
T Consensus       203 yPG~~~fDPlgl~~~-~~~---------~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~Hla  262 (276)
T 2wsc_3          203 YPGGPFFNPLGFGKD-EKS---------LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLT  262 (276)
T ss_dssp             TTSSSSCCCCCCSSS-CC--------------CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------
T ss_pred             CCCcccccchhcccc-cHH---------HHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhcc
Confidence            3444  899988642 111         355678999999999999999999999999999999887664

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=98.60  E-value=6.3e-10  Score=90.88  Aligned_cols=51  Identities=29%  Similarity=0.306  Sum_probs=42.5

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLA  113 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~  113 (125)
                      |||+.....+.         +++++.+.+|+.|||+|||||+..++.|.+||+++++|+.
T Consensus       201 fDPlgl~~~~~---------e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          201 FDPLGWGSASP---------QKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             CCCSSSSSSCC---------CSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             cCccccCcccH---------HHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            89998754222         2246678899999999999999999999999999998876

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.38  E-value=1.6e-07  Score=76.02  Aligned_cols=37  Identities=35%  Similarity=0.525  Sum_probs=29.7

Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCc
Q 042155           70 IQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGK  106 (125)
Q Consensus        70 ~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~  106 (125)
                      |.....|++.|++|++||||||+|++..++.|+.+|-
T Consensus        83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~  119 (243)
T 3pl9_A           83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI  119 (243)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence            3344468899999999999999999999999998763

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=98.36  E-value=4.3e-09  Score=84.74  Aligned_cols=52  Identities=25%  Similarity=0.314  Sum_probs=41.7

Q ss_pred             eeCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-HhhCchHHHHHHH
Q 042155           53 MVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIE-GQTGKNIIEQLAG  114 (125)
Q Consensus        53 ~~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E-~~TG~~il~Ql~~  114 (125)
                      .|||++... +         .+++++.+.+|+.|||+||+||+..++.| .+||+++++++..
T Consensus       171 ~fDPlgl~~-~---------~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~  223 (241)
T 2wsc_1          171 AFDPLGYSK-D---------PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT  223 (241)
T ss_dssp             CSCSSSCSC-S---------SSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred             ccccccccc-c---------hhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence            389998753 1         12346678899999999999999999999 5899999988764

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=98.34  E-value=1.8e-08  Score=81.37  Aligned_cols=49  Identities=22%  Similarity=0.258  Sum_probs=41.3

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS  117 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~  117 (125)
                      |||+....              +++.+..|+.|||+ ||||+..++.|.+||+++++++..++.
T Consensus       189 FDPLgl~~--------------~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hla  237 (251)
T 2wsc_4          189 FNPLNFAP--------------TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHIS  237 (251)
T ss_dssp             TCCCCCCS--------------SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTT
T ss_pred             cCccchhH--------------HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHcc
Confidence            89998753              24556789999999 999999999999999999988876543

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=98.31  E-value=1.6e-08  Score=81.72  Aligned_cols=46  Identities=37%  Similarity=0.501  Sum_probs=33.7

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII  109 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il  109 (125)
                      |||+++.. +         .+.+++.+++|++||||||+|++..++.|++|+.+++
T Consensus        76 fDPlGl~~-d---------~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~  121 (251)
T 2wsc_4           76 FDPLGLAE-D---------PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII  121 (251)
T ss_dssp             -----CCC-S---------CCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred             CCccccCC-C---------hHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence            79998742 1         1245788999999999999999999999999987765

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.27  E-value=4.5e-07  Score=72.25  Aligned_cols=42  Identities=26%  Similarity=0.391  Sum_probs=34.9

Q ss_pred             eeCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155           53 MVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT  104 (125)
Q Consensus        53 ~~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T  104 (125)
                      -|||+++.. +         .+.|++.|++|+++|||||+|++..++.|+++
T Consensus        45 GFDPLGLs~-d---------~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~   86 (232)
T 2bhw_A           45 GWDTAGLSA-D---------PETFSKNRELEVIHSRWAMLGALGSVFPELLS   86 (232)
T ss_dssp             SCCTTCTTC-S---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCC-C---------HHHHHHHHHHHHhccchHHHhhhhhhhHHHhc
Confidence            389999853 1         13467889999999999999999999999865

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=98.10  E-value=3.3e-07  Score=74.84  Aligned_cols=45  Identities=29%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchH
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNI  108 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~i  108 (125)
                      |||+++.. +         .+.+++.+++|++||||||+|++..++.|++++.++
T Consensus        87 fDPlGL~~-d---------~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~  131 (269)
T 2wsc_2           87 FDPLGLGS-D---------PESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI  131 (269)
T ss_dssp             -------C-C---------CSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTS
T ss_pred             CCccccCC-C---------HHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCc
Confidence            79998742 1         124578899999999999999999999999986554

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=97.90  E-value=8.1e-08  Score=78.68  Aligned_cols=33  Identities=30%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155           77 KRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII  109 (125)
Q Consensus        77 ~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il  109 (125)
                      ++.+++|++||||||+|++..++.|++++.+++
T Consensus        97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~  129 (276)
T 2wsc_3           97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI  129 (276)
T ss_dssp             THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred             HHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence            678899999999999999999999999987654

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=97.41  E-value=5.9e-06  Score=66.46  Aligned_cols=41  Identities=29%  Similarity=0.439  Sum_probs=33.1

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT  104 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T  104 (125)
                      |||+++...          .+.+++.+++|++||||||++++..++.|.++
T Consensus        68 fDPlgl~~~----------~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~  108 (241)
T 2wsc_1           68 FDPLGLGEV----------PANLERYKESELIHCRWAMLAVPGILVPEALG  108 (241)
T ss_dssp             CSSTTTTTT----------TTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred             cCccccCCC----------HHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence            899998531          12357788999999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	5e-04

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 73  KEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
            E F   +  E  NG  AM  +    V    TGK  +E LA + +  V+   
Sbjct: 157 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.15
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.27

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.15  E-value=1.7e-11  Score=93.90  Aligned_cols=57  Identities=26%  Similarity=0.212  Sum_probs=46.5

Q ss_pred             eeeCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155           52 IMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS  118 (125)
Q Consensus        52 ~~~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~  118 (125)
                      ..|||+.... .++++         ++.+..|+.|||+||||++..++.|.+||+++++|+..++..
T Consensus       146 g~fdPlg~~~-~~e~~---------~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~  202 (218)
T d1rwta_         146 GSFDPLGLAD-DPEAF---------AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD  202 (218)
T ss_dssp             GGGCTTCTTC-SHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHC
T ss_pred             CCccccccCC-CHHHH---------HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcC
Confidence            4489998754 33333         344567999999999999999999999999999999988764

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.27  E-value=2.6e-07  Score=70.16  Aligned_cols=41  Identities=27%  Similarity=0.349  Sum_probs=34.7

Q ss_pred             eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155           54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT  104 (125)
Q Consensus        54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T  104 (125)
                      ||||.+...          .+++++.|++|+.+|||||++++..++.|..+
T Consensus        33 FDPLgls~d----------~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~   73 (218)
T d1rwta_          33 WDTAGLSAD----------PETFAKNRELEVIHCRWAMLGALGCVFPELLA   73 (218)
T ss_dssp             CCTTCTTCS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccCCC----------HHHHHHHHHHHHhhceehHhhhcceeehhhhc
Confidence            899998631          12468889999999999999999999999864