Citrus Sinensis ID: 042199

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN

cccccccccccccHHHHHHHHHHcccccEEcEEEcccEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHcEEccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccc

cccHHHHHHccccHHHHHHHHHHHHccEEEEEEccccEEEccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHccEEEEEEccHHHcHHHHHHHHEcccEccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHcccccEcccccc

mmsskwrdeqhpsFINFISSFLSANSFRLNFVLvapdfifncggmsISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLalptreqnDSFVRSYFKYgmelgrptfvpvqdreMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTsiplidnhdanaLNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFrdpklylspkin

mmsskwrdeqhPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVlalptreqndSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKiahsrgvckrqdAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFfrdpklylspkin

************SFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYL*****

**********HPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDA**********AVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPK**

*********QHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN

*****W**EQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSP***

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		220
297740939		220	unnamed protein product [Vitis vinifera]	1.0	1.0	0.813	1e-106
225460065		248	PREDICTED: uncharacterized protein LOC10	1.0	0.887	0.813	1e-106
224056561		241	predicted protein [Populus trichocarpa]	1.0	0.912	0.790	1e-103
255569086		248	conserved hypothetical protein [Ricinus	1.0	0.887	0.777	1e-99
449442112		247	PREDICTED: uncharacterized protein LOC10	1.0	0.890	0.731	4e-96
356541056		235	PREDICTED: uncharacterized protein LOC10	1.0	0.936	0.686	3e-90
356544319		235	PREDICTED: uncharacterized protein LOC10	1.0	0.936	0.695	4e-90
115465747		248	Os05g0588200 [Oryza sativa Japonica Grou	0.995	0.883	0.712	5e-90
47777360		292	unknown protein [Oryza sativa Japonica G	0.995	0.75	0.712	7e-90
21594043		250	DNA ligase-like protein [Arabidopsis tha	1.0	0.88	0.681	2e-86

>gi\|297740939\|emb\|CBI31251.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/220 (81%), Positives = 200/220 (90%)

Query: 1   MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
           MM + WRDEQHPSFINFISSFL ANSFRLNFV +APDFIFNCGG+S++FVF+TNWDC+N 
Sbjct: 1   MMRNTWRDEQHPSFINFISSFLKANSFRLNFVPIAPDFIFNCGGLSVAFVFVTNWDCNNY 60

Query: 61  AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
              FSR+KKLKEQFAH Y+V+ LPTREQNDSFV SYFK GMELGRPTFVPVQD EMGFEK
Sbjct: 61  LPTFSRVKKLKEQFAHLYIVVTLPTREQNDSFVHSYFKLGMELGRPTFVPVQDMEMGFEK 120

Query: 121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
           I+KIAH+RGVCKRQD ISKL+AER+++VQ MDVFLRV+TSIP IDNHDAN+LNQAIGSI+
Sbjct: 121 IVKIAHARGVCKRQDVISKLRAERKKSVQGMDVFLRVITSIPGIDNHDANSLNQAIGSIK 180

Query: 181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
           AIAKASK YILENTDLS++KAE I RFFRDPK YLSPKIN
Sbjct: 181 AIAKASKDYILENTDLSSDKAETITRFFRDPKFYLSPKIN 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225460065\|ref\|XP_002271557.1\| PREDICTED: uncharacterized protein LOC100253283 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224056561\|ref\|XP_002298911.1\| predicted protein [Populus trichocarpa] gi\|222846169\|gb\|EEE83716.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255569086\|ref\|XP_002525512.1\| conserved hypothetical protein [Ricinus communis] gi\|223535191\|gb\|EEF36870.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449442112\|ref\|XP_004138826.1\| PREDICTED: uncharacterized protein LOC101220741 [Cucumis sativus] gi\|449490245\|ref\|XP_004158549.1\| PREDICTED: uncharacterized LOC101220741 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356541056\|ref\|XP_003538999.1\| PREDICTED: uncharacterized protein LOC100786486 [Glycine max]	Back alignment and taxonomy information

>gi\|356544319\|ref\|XP_003540600.1\| PREDICTED: uncharacterized protein LOC100780115 [Glycine max]	Back alignment and taxonomy information

>gi\|115465747\|ref\|NP_001056473.1\| Os05g0588200 [Oryza sativa Japonica Group] gi\|48475097\|gb\|AAT44166.1\| unknown protein [Oryza sativa Japonica Group] gi\|113580024\|dbj\|BAF18387.1\| Os05g0588200 [Oryza sativa Japonica Group] gi\|215766440\|dbj\|BAG98668.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|222632738\|gb\|EEE64870.1\| hypothetical protein OsJ_19727 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|47777360\|gb\|AAT37994.1\| unknown protein [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|21594043\|gb\|AAM65961.1\| DNA ligase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		220
TAIR\|locus:2010321		250	AT1G12790 "AT1G12790" [Arabido	1.0	0.88	0.672	2.1e-77

TAIR\|locus:2010321 AT1G12790 "AT1G12790" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 148/220 (67%), Positives = 177/220 (80%)

Query:     1 MMSSKWRDEQHPSFINFISSFLSANSFRLNFVLVAPDFIFNCGGMSISFVFITNWDCHNT 60
             +MS+ W+ EQ PS INFIS+FLSANSFRLNFV + PD IFNCGG+SI+FVF+T WD  N 
Sbjct:    31 IMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPPDLIFNCGGVSIAFVFVTKWDFSNV 90

Query:    61 AVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELGRPTFVPVQDREMGFEK 120
             A +FSR+K+LK QFA  YVV  L T+EQ+DSF+RSYF+Y ME G+P FV V D EMGFEK
Sbjct:    91 ASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQVTDAEMGFEK 150

Query:   121 IIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIE 180
             I+KIAHSRGVCK+Q   SKLK ER+R VQ  ++F+R VTSIP I+ HDAN L QAIGSIE
Sbjct:   151 IVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDANTLYQAIGSIE 210

Query:   181 AIAKASKTYILENTDLSAEKAEMIVRFFRDPKLYLSPKIN 220
             AIAKASK  IL NTDLS++KA+ + RFF+DP+ YLSPK N
Sbjct:   211 AIAKASKEDILANTDLSSKKADTLTRFFQDPEFYLSPKFN 250


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.44    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  170 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.63u 0.11s 19.74t   Elapsed:  00:00:01
  Total cpu time:  19.63u 0.11s 19.74t   Elapsed:  00:00:01
  Start:  Thu May  9 20:30:47 2013   End:  Thu May  9 20:30:48 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		220
KOG2841		254	consensus Structure-specific endonuclease ERCC1-XP	98.36
PF12826		64	HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS	98.05
PF14520		60	HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU	97.94
COG1948		254	MUS81 ERCC4-type nuclease [DNA replication, recomb	97.13
PRK12766		232	50S ribosomal protein L32e; Provisional	97.07
PRK13766		773	Hef nuclease; Provisional	96.72
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	96.52
PRK14351		689	ligA NAD-dependent DNA ligase LigA; Provisional	95.89
TIGR00575		652	dnlj DNA ligase, NAD-dependent. The member of this	95.84
TIGR02236		310	recomb_radA DNA repair and recombination protein R	95.45
PRK00558		598	uvrC excinuclease ABC subunit C; Validated	95.29
PRK07956		665	ligA NAD-dependent DNA ligase LigA; Validated	94.99
PRK00254		720	ski2-like helicase; Provisional	94.82
PRK14669		624	uvrC excinuclease ABC subunit C; Provisional	94.29
PRK14667		567	uvrC excinuclease ABC subunit C; Provisional	94.26
PRK14666		694	uvrC excinuclease ABC subunit C; Provisional	94.05
PRK13482		352	DNA integrity scanning protein DisA; Provisional	93.93
PRK14670		574	uvrC excinuclease ABC subunit C; Provisional	93.45
PRK04301		317	radA DNA repair and recombination protein RadA; Va	92.47
PRK14668		577	uvrC excinuclease ABC subunit C; Provisional	92.45
PF13905		95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	91.62
PTZ00035		337	Rad51 protein; Provisional	90.06
smart00611		312	SEC63 Domain of unknown function in Sec63p, Brr2p	89.62
cd02982		103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	89.17
PRK14671		621	uvrC excinuclease ABC subunit C; Provisional	89.15
PRK14350		669	ligA NAD-dependent DNA ligase LigA; Provisional	88.5
PRK14672		691	uvrC excinuclease ABC subunit C; Provisional	87.24
TIGR00597		112	rad10 DNA repair protein rad10. All proteins in th	86.94
TIGR02238		313	recomb_DMC1 meiotic recombinase Dmc1. This model d	86.88
COG0322		581	UvrC Nuclease subunit of the excinuclease complex	85.44
COG0272		667	Lig NAD-dependent DNA ligase (contains BRCT domain	85.27
smart00839		102	ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Vali	85.13
PRK00116		192	ruvA Holliday junction DNA helicase RuvA; Reviewed	82.92
COG5241		224	RAD10 Nucleotide excision repair endonuclease NEF1	82.78
PLN03187		344	meiotic recombination protein DMC1 homolog; Provis	82.45
PRK01172		674	ski2-like helicase; Provisional	80.14

>KOG2841 consensus Structure-specific endonuclease ERCC1-XPF, ERCC1 component [Replication, recombination and repair]	Back alignment and domain information

Probab=98.36  E-value=3e-06  Score=75.67  Aligned_cols=173  Identities=21%  Similarity=0.340  Sum_probs=123.7

Q ss_pred             cceeeee-eeCCceeeeCCCceEEEEEeeccCCCchHHHHHHHHHHHHhhcceEEEEEecCccchhhHHHhHhhhccccC
Q 042199           26 SFRLNFV-LVAPDFIFNCGGMSISFVFITNWDCHNTAVVFSRIKKLKEQFAHFYVVLALPTREQNDSFVRSYFKYGMELG  104 (220)
Q Consensus        26 S~RLnF~-~iaPDfIfn~gglSvAFifvt~wdc~n~a~ifsRV~kLK~qF~~lYVVvtl~t~eq~dsF~~sYFk~gm~~g  104 (220)
                      .-++-|. .|-|||.++++ .+|-|+-.+.-.|.+ .-|.+||++|-.-|++--+++-+..+|++..-.+ -|+.-| ++
T Consensus        75 nv~w~f~ddi~PDf~lg~~-~cvLyLSl~yH~l~p-dYi~~Ri~~l~k~yk~~VLl~~vd~~e~~~~l~e-l~k~~~-l~  150 (254)
T KOG2841|consen   75 NVKWEFGDDIIPDFVLGRG-CCVLYLSLKYHKLHP-DYIYRRIRKLGKNYKLRVLLVHVDMEEPYKPLLE-LTKTCD-LN  150 (254)
T ss_pred             cCCeEecCCCCcceEecCc-eEEEEeehHhhhcCc-HHHHHHHHHhcccccceEEEEEecCcchHHHHHH-HHHHHH-hh
Confidence            6788899 99999998774 556666666655555 4588999999888999999999999999877544 445433 33


Q ss_pred             cceeeecCCcchhHHHHHHHHHhhhhhhhhhhHHHHHHHHHh--hhhccceeEEeeeccCCCCccChhHHHHhhhhHHHH
Q 042199          105 RPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRR--AVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAI  182 (220)
Q Consensus       105 ~PtfvpV~d~eMgfEkivkIAh~~gvcKqQ~i~s~lk~ERkq--~VQ~md~flrvvTSIP~id~HDAn~L~QaIGSieAI  182 (220)
                      -=|++=.-+.|-.    -|+-.---..  ++--.++..||+.  .++   .-++++|+|||+++-||-.|-|-.||+++|
T Consensus       151 ~~Tl~lA~s~Eea----aryIE~~k~~--ek~p~dli~~~~~~d~ls---~~~~~Lt~i~~VnKtda~~LL~~FgsLq~~  221 (254)
T KOG2841|consen  151 DVTLVLAWSMEEA----ARYIETYKEY--EKKPIDLIMERKDRDLLS---SLLGFLTTIPGVNKTDAQLLLQKFGSLQQI  221 (254)
T ss_pred             ceeeeeeccHHHH----HHHHHHHHHh--hcCCchhhhhcccccHHH---HHHHHHHhCCCCCcccHHHHHHhcccHHHH
Confidence            3355444333322    2221111111  1112233333321  111   356889999999999999999999999999


Q ss_pred             HhhhhhhhhhccCCChhhHHHHHHHhcCC
Q 042199          183 AKASKTYILENTDLSAEKAEMIVRFFRDP  211 (220)
Q Consensus       183 akaSke~IlenTDLS~dkAE~i~rffrDp  211 (220)
                      .-||.+++-.--.|-.-||+.+-+||.-|
T Consensus       222 ~~AS~~ele~~~G~G~~kak~l~~~l~~p  250 (254)
T KOG2841|consen  222 SNASEGELEQCPGLGPAKAKRLHKFLHQP  250 (254)
T ss_pred             HhcCHhHHHhCcCcCHHHHHHHHHHHhcc
Confidence            99999999999999999999999999877

>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B	Back alignment and domain information

>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A	Back alignment and domain information

>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12766 50S ribosomal protein L32e; Provisional	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional	Back alignment and domain information

>TIGR00575 dnlj DNA ligase, NAD-dependent	Back alignment and domain information

>TIGR02236 recomb_radA DNA repair and recombination protein RadA	Back alignment and domain information

>PRK00558 uvrC excinuclease ABC subunit C; Validated	Back alignment and domain information

>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>PRK14669 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PRK14667 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PRK14666 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PRK13482 DNA integrity scanning protein DisA; Provisional	Back alignment and domain information

>PRK14670 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PRK04301 radA DNA repair and recombination protein RadA; Validated	Back alignment and domain information

>PRK14668 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A	Back alignment and domain information

>PTZ00035 Rad51 protein; Provisional	Back alignment and domain information

>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins	Back alignment and domain information

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants	Back alignment and domain information

>PRK14671 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional	Back alignment and domain information

>PRK14672 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>TIGR00597 rad10 DNA repair protein rad10	Back alignment and domain information

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1	Back alignment and domain information

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	Back alignment and domain information

>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed	Back alignment and domain information

>COG5241 RAD10 Nucleotide excision repair endonuclease NEF1, RAD10 subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		220
1z00_A		89	DNA excision repair protein ERCC-1; helix-hairpin-	7e-06
2a1j_B		91	DNA excision repair protein ERCC-1; XPF, xeroderma	1e-05

>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Length = 89	Back alignment and structure

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 145 RRAVQTMDVFLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMI 204
           +     +      +T++  ++  D+  L    GS+E +  AS+  +     L  +KA  +
Sbjct: 8   KLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRL 67

Query: 205 VRFFRDP 211
                +P
Sbjct: 68  FDVLHEP 74

PyMOL of 1z00

>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Length = 91	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		220
2bgw_A		219	XPF endonuclease; hydrolase, structure specific en	98.41
2a1j_A		63	DNA repair endonuclease XPF; XPF, xeroderma pigmen	97.96
1x2i_A		75	HEF helicase/nuclease; alpha helix, helix-hairpin-	97.85
2a1j_B		91	DNA excision repair protein ERCC-1; XPF, xeroderma	97.81
1z00_A		89	DNA excision repair protein ERCC-1; helix-hairpin-	97.79
1kft_A		78	UVRC, excinuclease ABC subunit C; helix-hairpin-he	97.66
1z00_B		84	DNA repair endonuclease XPF; helix-hairpin-helix,	97.48
3c65_A		226	Uvrabc system protein C; UVRC, endonuclease, nucle	96.33
2nrt_A		220	Uvrabc system protein C; UVRC, endonuclease, RNAse	96.27
1wcn_A		70	Transcription elongation protein NUSA; RNA-binding	96.2
2owo_A		671	DNA ligase; protein-DNA complex, ligase-DNA comple	95.7
4glx_A		586	DNA ligase; inhibitor, ligase-ligase inhibitor-DNA	95.36
3sgi_A		615	DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tub	94.88
1dgs_A		667	DNA ligase; AMP complex, NAD+-dependent; HET: DNA	94.86
2i1q_A		322	DNA repair and recombination protein RADA; ATPase,	94.24
1u9l_A		70	Transcription elongation protein NUSA; escherichia	93.03
1vq8_Y		241	50S ribosomal protein L32E; ribosome 50S, protein-	91.87
4gfj_A		685	Topoisomerase V; helix-hairpin-helix, DNA repair e	91.42
2zj8_A		720	DNA helicase, putative SKI2-type helicase; RECA fo	91.0
3c1y_A		377	DNA integrity scanning protein DISA; DNA damage, D	90.96
1b22_A		114	DNA repair protein RAD51; DNA binding, riken struc	89.8
1ixr_A		191	Holliday junction DNA helicase RUVA; heterooligome	89.23
1pzn_A		349	RAD51, DNA repair and recombination protein RAD51,	89.04
1cuk_A		203	RUVA protein; DNA repair, SOS response, DNA-bindin	87.55
2ziu_A		311	MUS81 protein; helix-hairpin-helix, alternative sp	87.49
2z43_A		324	DNA repair and recombination protein RADA; archaea	87.45
3uem_A		361	Protein disulfide-isomerase; thioredoxin-like doma	82.03

>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A	Back alignment and structure

Probab=98.41  E-value=2.5e-06  Score=68.33  Aligned_cols=186  Identities=17%  Similarity=0.218  Sum_probs=119.5

Q ss_pred             HHHHHhcccceeeeeee-CCceeeeCCCceEEEEEeeccCCCch-----HHHHHHHHHHHHhhcceEEEEEecCccc---
Q 042199           18 ISSFLSANSFRLNFVLV-APDFIFNCGGMSISFVFITNWDCHNT-----AVVFSRIKKLKEQFAHFYVVLALPTREQ---   88 (220)
Q Consensus        18 is~fL~AnS~RLnF~~i-aPDfIfn~gglSvAFifvt~wdc~n~-----a~ifsRV~kLK~qF~~lYVVvtl~t~eq---   88 (220)
                      +...|.....+.-+..+ .+||++..     -++++=+.-.+..     .-++.++.+|++.+.+.+++|.......   
T Consensus        22 ~~~~l~~~gv~~~~~~L~vgDy~~~~-----~~~VERKs~~Dl~~Si~~~Rl~~Q~~~l~~~~~~~~lliE~d~~~~~~~   96 (219)
T 2bgw_A           22 VPSILESLGVQVIPKQLPMGDYLVSD-----SIIVERKTSSDFAKSLFDGRLFEQASRLAEHYETVFIIVEGPPVPRRYR   96 (219)
T ss_dssp             HHHHHHHTTCEEEEECCSSSSEEEET-----TEEEEEEEHHHHHHHHHHSHHHHHHHHHHHHCSEEEEEEESCSSCGGGT
T ss_pred             hHHHHHhCCCEEEEEEcCcCCEEeeC-----CeEEEeCCHHHHHHHhhcCcHHHHHHHHHHhcCCcEEEEEecCcccccc
Confidence            44556666777778777 69999974     1334333211222     3468899999999999998888764331   


Q ss_pred             --hhhHHHhHhhhccccCcceeeecCCcchhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhhccceeEEeeeccCCCCc
Q 042199           89 --NDSFVRSYFKYGMELGRPTFVPVQDREMGFEKIIKIAHSRGVCKRQDAISKLKAERRRAVQTMDVFLRVVTSIPLIDN  166 (220)
Q Consensus        89 --~dsF~~sYFk~gm~~g~PtfvpV~d~eMgfEkivkIAh~~gvcKqQ~i~s~lk~ERkq~VQ~md~flrvvTSIP~id~  166 (220)
                        .++....--+.-...|. +.++..+.+-.-+-+..++...-.--...+.- .+..+.+.  -.+.+...+++||||..
T Consensus        97 ~~~~~i~~~l~~~~~~~~~-~vi~t~s~~eta~~l~~l~~~~~~~~~~ai~~-~~~~~~~~--~~~~~~~~L~~i~gVg~  172 (219)
T 2bgw_A           97 GRERSLYAAMAALQLDYGI-RLMNTMDPKGTALVIESLARLSTREGGQRIVI-HKKPRLSD--VREWQLYILQSFPGIGR  172 (219)
T ss_dssp             TTHHHHHHHHHHHHHHSCC-EEEEESSHHHHHHHHHHHHHHHSCBCCTTCCC-CCCCCCCH--HHHHHHHHHHTSTTCCH
T ss_pred             CCHHHHHHHHHHHHHHCCc-eEEEcCCHHHHHHHHHHHHHhccccccccccc-cccccccc--HHHHHHHHHhcCCCCCH
Confidence              22233333333334444 56777777776665555554220000000000 00000000  01134445889999999


Q ss_pred             cChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcCCc
Q 042199          167 HDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDPK  212 (220)
Q Consensus       167 HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrDp~  212 (220)
                      ..|..|.+..||+++|..|+.+.+.+-.++...+|+.|..||++|.
T Consensus       173 ~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~~~  218 (219)
T 2bgw_A          173 RTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTPY  218 (219)
T ss_dssp             HHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999873

PyMOL of 2bgw

>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*	Back alignment and structure

>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5	Back alignment and structure

>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5	Back alignment and structure

>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5	Back alignment and structure

>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3	Back alignment and structure

>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*	Back alignment and structure

>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}	Back alignment and structure

>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A	Back alignment and structure

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B	Back alignment and structure

>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}	Back alignment and structure

>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}	Back alignment and structure

>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}	Back alignment and structure

>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*	Back alignment and structure

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*	Back alignment and structure

>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A	Back alignment and structure

>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...	Back alignment and structure

>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}	Back alignment and structure

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*	Back alignment and structure

>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*	Back alignment and structure

>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1	Back alignment and structure

>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2	Back alignment and structure

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11	Back alignment and structure

>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A	Back alignment and structure

>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A	Back alignment and structure

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*	Back alignment and structure

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		220
d2bgwa1		70	a.60.2.5 (A:160-229) DNA repair endonuclease XPF {	8e-06
d2a1jb1		78	a.60.2.5 (B:219-296) DNA excision repair protein E	2e-04
d2i1qa1		60	a.60.4.1 (A:5-64) DNA repair protein Rad51, N-term	2e-04
d1pzna1		61	a.60.4.1 (A:35-95) DNA repair protein Rad51, N-ter	3e-04
d1x2ia1		68	a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF201	3e-04
d1kfta_		56	a.60.2.3 (A:) Excinuclease UvrC C-terminal domain	0.003

>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Length = 70	Back information, alignment and structure


class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: DNA repair endonuclease XPF
species: Aeropyrum pernix [TaxId: 56636]

 Score = 40.2 bits (94), Expect = 8e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 155 LRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDP 211
           L ++ S P I    A  + +  GS+E    ASK  I +   +  ++AE I +    P
Sbjct: 12  LYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTP 68

PyMOL of d2bgwa1

>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78	Back information, alignment and structure

>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 60	Back information, alignment and structure

>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 61	Back information, alignment and structure

>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 68	Back information, alignment and structure

>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Length = 56	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		220
d2a1jb1		78	DNA excision repair protein ERCC-1 {Human (Homo sa	98.71
d2bgwa1		70	DNA repair endonuclease XPF {Aeropyrum pernix [Tax	98.66
d1x2ia1		68	ATP-dependent RNA helicase PF2015 {Pyrococcus furi	98.56
d2a1ja1		62	DNA repair endonuclease XPF {Human (Homo sapiens)	98.41
d1pzna1		61	DNA repair protein Rad51, N-terminal domain {Archa	98.18
d1kfta_		56	Excinuclease UvrC C-terminal domain {Escherichia c	98.18
d2i1qa1		60	DNA repair protein Rad51, N-terminal domain {Archa	97.92
d1dgsa1		181	NAD+-dependent DNA ligase, domain 3 {Thermus filif	96.99
d1szpa1		64	DNA repair protein Rad51, N-terminal domain {Baker	94.61
d1b22a_		70	DNA repair protein Rad51, N-terminal domain {Human	88.46

>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: DNA excision repair protein ERCC-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.8e-09  Score=74.22  Aligned_cols=58  Identities=21%  Similarity=0.377  Sum_probs=55.4

Q ss_pred             eEEeeeccCCCCccChhHHHHhhhhHHHHHhhhhhhhhhccCCChhhHHHHHHHhcCC
Q 042199          154 FLRVVTSIPLIDNHDANALNQAIGSIEAIAKASKTYILENTDLSAEKAEMIVRFFRDP  211 (220)
Q Consensus       154 flrvvTSIP~id~HDAn~L~QaIGSieAIakaSke~IlenTDLS~dkAE~i~rffrDp  211 (220)
                      .+..+|+||||...||..|.+..||+++|.+|+.+.+.+--++...+|+.|.+||++|
T Consensus        17 ~~~~L~~I~gIg~~~a~~L~~~F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f~~p   74 (78)
T d2a1jb1          17 VTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP   74 (78)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHSC
T ss_pred             HHHHhcCCCCcCHHHHHHHHHHhCCcHHHHhhhHHHHHHhhhhhHHHHHHHHHHHcCc
Confidence            4456889999999999999999999999999999999999999999999999999998

PyMOL of d2a1jb1

>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}	Back information, alignment and structure

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure