Citrus Sinensis ID: 042254

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MRTLASFNAPTPAAAAITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIESGDKGQEGDAANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVTDHEDNHRENQETQGPQVQNQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEcccccccEEcccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccccEEEcccccccccccccccccccccccccEccccccccccccHcccccccccccccccc
Coil and Loop (DISEMBL)
mrtlasfnaptpAAAAITKATVatqqrspwhspvpylfGGLAAMLGLIAFALLILACSYwklsdsrdiesgdkgqegdaansvKVYEEKILVIMagdekptflatpvctkpssfvdgkqidkneqgenfeigEKVKEVTdhednhrenqetqgpqvqnq
Flexible Loop (DISEMBL)
mrtlasfnaptpaAAAITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDiesgdkgqegdaansvkVYEEKILVIMAGDEKPtflatpvctkpssfvdgkqidkneqgenfeigeKVKEVTDHEDnhrenqetqgpqvqnq
Low Complexity Region (SEG)
MRTLASFNaptpaaaaitkatvatQQRSPWHSPVPYlfgglaamlgliafallilaCSYWKLSDSRDIESGDKGQEGDAANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVTDHEDNHRENQETQGPQVQNQ
Disordered region (IsUnstruct)
********************TVA***RSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS*******************VKVYEEKILVIMAGDEKPTFLATPVCTK*************************************************
Disordered Region (DISOPRED)
****************************PWHSPVPYLFGGLAAMLGLIAFALLILA********************************KILVIMAGDEKPTFLATPVC***************************************************
Disordered Region (DISEMBL)
**********TPAAAAI***********PWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDS**************ANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVT********************
Disordered Region (DISPRO)
*****************************WHSPVPYLFGGLAAMLGLIAFALLILACSYWKL**********************VYEEKILVIMAGDEKPTFLATPV****************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRTLASFNAPTPAAAAITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIESGDKGQEGDAANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVTDHEDNHRENQETQGPQVQNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q8S8A0	156	Protein GLUTAMINE DUMPER	yes	no	0.742	0.756	0.542	2e-27
Q9SW07	129	Protein GLUTAMINE DUMPER	no	no	0.672	0.829	0.543	1e-25
O81775	158	Protein GLUTAMINE DUMPER	no	no	0.515	0.518	0.633	5e-25
Q9FHH5	148	Protein GLUTAMINE DUMPER	no	no	0.566	0.608	0.576	1e-24
Q3E965	131	Protein GLUTAMINE DUMPER	no	no	0.704	0.854	0.564	8e-20

>sp|Q8S8A0|GDU4_ARATH Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana GN=GDU4 PE=2 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 11/129 (8%)

Query: 28  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIESGDK-GQEGDAANSVK-- 84
           SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS S D +SG++  +E ++ + VK  
Sbjct: 31  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGD-DSGERVDEEKESRSGVKAA 89

Query: 85  --VYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVTDHE 142
               EEK+LVIMAGD+ P FLATP   K     +G+ +   E G    IG   +++ D E
Sbjct: 90  SAACEEKVLVIMAGDDLPRFLATPAANKCMCGHEGRMVIFKEDG----IGAGEEKMGDRE 145

Query: 143 DNHRENQET 151
              +EN+ET
Sbjct: 146 -KAKENEET 153

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW07|GDU2_ARATH Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana GN=GDU2 PE=2 SV=1

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 73/114 (64%), Gaps = 7/114 (6%)

Query: 16  AITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDS--RDIESGDK 73
           +I  ++      SPWHSPVPYLFGGLAAML LI  ALLILACSYW+LS S  RD+E+GD 
Sbjct: 14  SINASSSMVVPHSPWHSPVPYLFGGLAAMLALICVALLILACSYWRLSGSAERDLEAGDD 73

Query: 74  GQEGDAANSVKVYE--EKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQ 125
            +  +  N  K  E  EK LVIMAGD +PT+LATP      S   G   D NE+
Sbjct: 74  AKPDNDTNKTKHTEMPEKFLVIMAGDVRPTYLATPATRSEQSCTCG---DHNEE 124

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.

Arabidopsis thaliana (taxid: 3702)

>sp|O81775|GDU1_ARATH Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana GN=GDU1 PE=1 SV=1

 Score =  113 bits (283), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 68/90 (75%), Gaps = 8/90 (8%)

Query: 27  RSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS-----DSRDIESGDKGQEGD-AA 80
           +SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS     D ++++   + + GD AA
Sbjct: 27  QSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSSGEEDGQNVDEEKESRSGDKAA 86

Query: 81  NSVKVYEEKILVIMAGDEKPTFLATPVCTK 110
           N    YEEK LVIMAG++ P +LATP   K
Sbjct: 87  NG--AYEEKFLVIMAGEDLPRYLATPAMKK 114

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Required the interaction with the RING-type E3 ubiquitin-protein ligase LOG2 to fulfill its function. Plays a role in the Gln export at hydathodes, at xylem parenchyma into xylem sap and from mesophyll into leaf apoplasm. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHH5|GDU3_ARATH Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana GN=GDU3 PE=2 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 68/104 (65%), Gaps = 14/104 (13%)

Query: 19  KATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSD----------SRDI 68
           + T+     SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS            RD+
Sbjct: 17  RTTMGGGPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDL 76

Query: 69  ESGDKGQEGDAANSVKVYEEKILVIMAGDEKPTFLATP---VCT 109
           E GD   +  A   V +  EK LVIMAG+ KPT+LATP    CT
Sbjct: 77  EVGDVKPDKTAVKPVAL-PEKFLVIMAGNVKPTYLATPSVKTCT 119

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E965|GDU5_ARATH Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana GN=GDU5 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 82/124 (66%), Gaps = 12/124 (9%)

Query: 22  VATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIESGDKGQEGDAAN 81
           V +Q RSPW +PVPYLFGGLAAMLGLIAFALL+LACSYW+L  SR  E  +K  E     
Sbjct: 20  VESQTRSPWRTPVPYLFGGLAAMLGLIAFALLLLACSYWRL--SRQTEDEEKQTESGEKV 77

Query: 82  SVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVTDH 141
             K +EEKILVIMAG   PTFLATPV  K    +D   ++K E G+N E      +VT  
Sbjct: 78  VAKAFEEKILVIMAGQNNPTFLATPVAAKIC--LDCVNMEKKE-GQNGE-----SKVT-- 127

Query: 142 EDNH 145
           E+NH
Sbjct: 128 EENH 131

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
225430575	171	PREDICTED: uncharacterized protein LOC10	0.949	0.883	0.553	3e-37
224092675	178	predicted protein [Populus trichocarpa]	0.830	0.741	0.526	1e-33
224153485	171	predicted protein [Populus trichocarpa]	0.735	0.684	0.586	2e-33
224143385	178	predicted protein [Populus trichocarpa]	0.886	0.792	0.521	5e-33
255548650	183	conserved hypothetical protein [Ricinus	0.698	0.606	0.620	9e-33
225446182	156	PREDICTED: uncharacterized protein LOC10	0.855	0.871	0.515	1e-31
351723749	165	uncharacterized protein LOC100500572 [Gl	0.553	0.533	0.725	9e-30
351727126	165	uncharacterized protein LOC100305509 [Gl	0.685	0.660	0.614	7e-29
357465957	194	hypothetical protein MTR_3g105690 [Medic	0.698	0.572	0.558	3e-28
255581902	163	conserved hypothetical protein [Ricinus	0.823	0.803	0.506	4e-28

>gi|225430575|ref|XP_002263122.1| PREDICTED: uncharacterized protein LOC100263835 [Vitis vinifera]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 117/179 (65%), Gaps = 28/179 (15%)

Query: 1   MRTLASFNAPTPAAAAITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW 60
           MRT A+FNA        T A+ AT QRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW
Sbjct: 1   MRTGATFNA--------TAASPATVQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW 52

Query: 61  KLSDS----------RDIESGDKGQEGDAAN-SVKVYEEKILVIMAGDEKPTFLATPVCT 109
           + S+           RD+ESGD G+ GDA      VYEEKI+VIMAGDEKP FLATP+ +
Sbjct: 53  RFSNGHLDNGESGGERDLESGDDGKGGDARKVGPVVYEEKIVVIMAGDEKPRFLATPMSS 112

Query: 110 KPSSFVD--GKQ--IDKNEQGENFEIGEKVKEVTDHED-----NHRENQETQGPQVQNQ 159
           + SSF D  GK    +K EQ +  + GEK+KE  +H +     ++ E Q T   Q QNQ
Sbjct: 113 RASSFGDNNGKSDGEEKKEQEKAEKSGEKLKEDMNHYEQTATSHNGETQHTHEAQEQNQ 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092675|ref|XP_002309697.1| predicted protein [Populus trichocarpa] gi|222855673|gb|EEE93220.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/152 (52%), Positives = 96/152 (63%), Gaps = 20/152 (13%)

Query: 1   MRTLASFNAPTPAAAAITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW 60
           MR ++  +     + A        Q RSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW
Sbjct: 1   MRPISHLDTTRSTSKAAATPPAIAQPRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW 60

Query: 61  KLS----------DSRDIESGDKGQEGDAANSVK-VYEEKILVIMAGDEKPTFLATPVCT 109
           +LS          D RD+ESG++ +  +   + K VYEEK LVIMAG++KPTFLATPVC+
Sbjct: 61  RLSSRLDSENEGNDQRDLESGNEKEGSNPGKAEKRVYEEKFLVIMAGNQKPTFLATPVCS 120

Query: 110 KPSSFVDGKQIDKNEQGENFEIGEKVKEVTDH 141
           K SS   G QID  E+       EK +   DH
Sbjct: 121 KVSS--SGAQIDNQEE-------EKTESTGDH 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224153485|ref|XP_002337359.1| predicted protein [Populus trichocarpa] gi|222838907|gb|EEE77258.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 94/138 (68%), Gaps = 21/138 (15%)

Query: 15  AAITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS----------D 64
           AA T   +A Q RSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS          D
Sbjct: 6   AAATPPAIA-QPRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSRLDSENEGND 64

Query: 65  SRDIESGDKGQEGDAANSVK-VYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKN 123
            RD+ESG++ +  +   + K VYEEK LVIMAG++KPTFLATPVC+K SS   G QID  
Sbjct: 65  QRDLESGNEKEGSNPGKAEKRVYEEKFLVIMAGNQKPTFLATPVCSKVSS--SGAQIDNQ 122

Query: 124 EQGENFEIGEKVKEVTDH 141
           E+       EK +   DH
Sbjct: 123 EE-------EKTESTGDH 133

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143385|ref|XP_002324938.1| predicted protein [Populus trichocarpa] gi|222866372|gb|EEF03503.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/163 (52%), Positives = 103/163 (63%), Gaps = 22/163 (13%)

Query: 1   MRTLASFN---APTPAAAAITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILAC 57
           MR ++  +   + T AAA         Q RSPWHSPVPYLFGGLAAMLGLIAFALLILAC
Sbjct: 1   MRHISHLDTTISTTKAAATSPSPPAVVQPRSPWHSPVPYLFGGLAAMLGLIAFALLILAC 60

Query: 58  SYWKLS-------DSRDIESGDKGQEGDAANSVKVYEEKILVIMAGDEKPTFLATPVCTK 110
           SYW++S       +  D+ESG++ +EG   N  KV+EEK LVIMAG+EKPTFLATPVC+K
Sbjct: 61  SYWRISGRLDSENEGNDLESGNE-KEGKPEN--KVFEEKFLVIMAGNEKPTFLATPVCSK 117

Query: 111 PSSFVDGKQIDKNEQGENFEIGEKVKEVTDHEDNHRENQETQG 153
            SSFV   +ID  E+        K        D+  +NQE  G
Sbjct: 118 ASSFV--AKIDNQEEA-------KTGSTPTGHDDKVKNQEMIG 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548650|ref|XP_002515381.1| conserved hypothetical protein [Ricinus communis] gi|223545325|gb|EEF46830.1| conserved hypothetical protein [Ricinus communis]

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/129 (62%), Positives = 96/129 (74%), Gaps = 18/129 (13%)

Query: 14  AAAITKAT-----VATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS---DS 65
           AAA T+AT     ++  QRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS   D+
Sbjct: 10  AAATTEATLSPPLISQPQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGRVDN 69

Query: 66  R-------DIESGDKGQEG--DAANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVD 116
           R       D+E+G++ + G   AA + KVYEEKILVIMAGD+KPTFLATPV ++  SF D
Sbjct: 70  REGSHGGDDLENGNEKEGGANKAAGNDKVYEEKILVIMAGDQKPTFLATPVSSRAPSFGD 129

Query: 117 -GKQIDKNE 124
              +I+K E
Sbjct: 130 KSSKIEKTE 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446182|ref|XP_002278130.1| PREDICTED: uncharacterized protein LOC100266820 [Vitis vinifera]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 97/163 (59%), Gaps = 27/163 (16%)

Query: 2   RTLASFNA--PTPAAAAITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSY 59
           RT  + NA   TPAA+         Q  SPWHSPVPYLFGGLAAMLGLIAFALLILACSY
Sbjct: 3   RTGGTLNATAATPAAS--------VQPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSY 54

Query: 60  WKLSD---------SRDIESGDKGQEGDAANSVKVYEEKILVIMAGDEKPTFLATPVCTK 110
           WKLS          +RD E+GD G  GDA      +EEKILVIMAGD KPT+LATP+ ++
Sbjct: 55  WKLSGYLEGDDDSVARDAEAGD-GAGGDAVKPPMAFEEKILVIMAGDVKPTYLATPMSSR 113

Query: 111 PSSFVDGKQIDKNEQGENFEIGEKVKEVTDHEDNHRENQETQG 153
            SSF +           N E+ EK + V +      ENQ   G
Sbjct: 114 ASSFGE-------RSSNNSEMTEKSEAVAESPKQGSENQVQTG 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723749|ref|NP_001236266.1| uncharacterized protein LOC100500572 [Glycine max] gi|255630657|gb|ACU15688.1| unknown [Glycine max]

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 78/102 (76%), Gaps = 14/102 (13%)

Query: 25  QQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSD--------SRDIESGDKGQ- 75
           Q  S WHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS          RD+ES   G+ 
Sbjct: 27  QHSSTWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGQLQNEENAERDLESVVGGEK 86

Query: 76  EGDAAN--SVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFV 115
           +GD+AN  SV VYEEKILVIMAGDEKPTFLATP   K SSFV
Sbjct: 87  QGDSANKESVTVYEEKILVIMAGDEKPTFLATP---KASSFV 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727126|ref|NP_001236382.1| uncharacterized protein LOC100305509 [Glycine max] gi|255625735|gb|ACU13212.1| unknown [Glycine max]

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 83/122 (68%), Gaps = 13/122 (10%)

Query: 26  QRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDS--------RDIESGDKGQEG 77
           Q S WHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS          RD+ES    ++G
Sbjct: 24  QHSTWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGQLLNEENAERDLESVAGEKQG 83

Query: 78  DAAN--SVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKV 135
           D+AN  SVKVYEEKILVIMAGD+KPTFL TP   K SS          E  EN    EK+
Sbjct: 84  DSANKDSVKVYEEKILVIMAGDDKPTFLVTP---KASSVTRCVPNHFEENLENHVTSEKL 140

Query: 136 KE 137
           ++
Sbjct: 141 EK 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465957|ref|XP_003603263.1| hypothetical protein MTR_3g105690 [Medicago truncatula] gi|355492311|gb|AES73514.1| hypothetical protein MTR_3g105690 [Medicago truncatula]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 85/120 (70%), Gaps = 9/120 (7%)

Query: 20  ATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS-------DSRDIESGD 72
           +T +    S WHSP+PYLFGGLAAMLGLIAFALLILACSYW+L+       ++ +  + +
Sbjct: 18  STASMMNHSSWHSPIPYLFGGLAAMLGLIAFALLILACSYWRLTGQLLDEENNSNNRNME 77

Query: 73  KGQEGDAAN--SVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFE 130
             +EG+ +N  SVKVYEEK+LVIMAGD+ PTFLATPV  K SS ++      +EQ EN E
Sbjct: 78  NEKEGENSNKESVKVYEEKVLVIMAGDQNPTFLATPVFPKSSSVMNLDANHSDEQRENHE 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581902|ref|XP_002531750.1| conserved hypothetical protein [Ricinus communis] gi|223528620|gb|EEF30639.1| conserved hypothetical protein [Ricinus communis]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 95/150 (63%), Gaps = 19/150 (12%)

Query: 26  QRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIESGDKGQEGD------- 78
           Q SPWHSPVPYLFGGLAAMLGLIAFAL+ILACSYWKLS    +E+G++G E D       
Sbjct: 15  QHSPWHSPVPYLFGGLAAMLGLIAFALVILACSYWKLSGY--LENGNEGGERDLEAGGGE 72

Query: 79  -AANSVK-----VYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQI---DKNEQGENF 129
              N+ K     V+EEK LVIMAG+ KPTFLATP+ ++ SSF D K     +K+E+    
Sbjct: 73  GGDNNEKQRQGVVFEEKFLVIMAGEVKPTFLATPMSSRSSSFGDTKSCSCGEKSEKSTEN 132

Query: 130 EIGEKVKEVTDHEDNHRENQETQGPQVQNQ 159
              E VK+ +D E + R    T    + +Q
Sbjct: 133 CTAETVKQ-SDQEQSSRLETTTTQESISDQ 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:505006270	156	GDU4 "AT2G24762" [Arabidopsis	0.742	0.756	0.387	4.7e-16
TAIR|locus:2149448	131	GDU5 "AT5G24920" [Arabidopsis	0.685	0.832	0.421	2.6e-15
TAIR|locus:2117517	129	GDU2 "AT4G25760" [Arabidopsis	0.597	0.736	0.431	6.9e-15
TAIR|locus:2124894	158	GDU1 "glutamine dumper 1" [Ara	0.754	0.759	0.356	3.8e-14
TAIR|locus:504954872	148	GDU3 "AT5G57685" [Arabidopsis	0.622	0.668	0.369	2.8e-11
TAIR|locus:1005716497	111	GDU6 "AT3G30725" [Arabidopsis	0.534	0.765	0.344	6.1e-07

TAIR|locus:505006270 GDU4 "AT2G24762" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 50/129 (38%), Positives = 68/129 (52%)

Query:    28 SPWHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKLSDSRDIESGDK-GQEGDAANSVKVY 86
             SPWHSPVPY                    CSYW+LS S D +SG++  +E ++ + VK  
Sbjct:    31 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGD-DSGERVDEEKESRSGVKAA 89

Query:    87 ----EEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVTDHE 142
                 EEK+LVIMAGD+ P FLATP   K     +G+ +   E G    IG   +++ D E
Sbjct:    90 SAACEEKVLVIMAGDDLPRFLATPAANKCMCGHEGRMVIFKEDG----IGAGEEKMGDRE 145

Query:   143 DNHRENQET 151
                +EN+ET
Sbjct:   146 -KAKENEET 153

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:2149448 GDU5 "AT5G24920" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 51/121 (42%), Positives = 61/121 (50%)

Query:    25 QQRSPWHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKLSDSRDIESGDKGQEGDAANSVK 84
             Q RSPW +PVPY                    CSYW+LS  R  E  +K  E       K
Sbjct:    23 QTRSPWRTPVPYLFGGLAAMLGLIAFALLLLACSYWRLS--RQTEDEEKQTESGEKVVAK 80

Query:    85 VYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVTDHEDN 144
              +EEKILVIMAG   PTFLATPV  K    +D   ++K E G+N   GE   +VT  E+N
Sbjct:    81 AFEEKILVIMAGQNNPTFLATPVAAKIC--LDCVNMEKKE-GQN---GES--KVT--EEN 130

Query:   145 H 145
             H
Sbjct:   131 H 131

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:2117517 GDU2 "AT4G25760" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 44/102 (43%), Positives = 52/102 (50%)

Query:    28 SPWHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKLSDS--RDIESGDKGQEGDAANSVKV 85
             SPWHSPVPY                    CSYW+LS S  RD+E+GD  +  +  N  K 
Sbjct:    26 SPWHSPVPYLFGGLAAMLALICVALLILACSYWRLSGSAERDLEAGDDAKPDNDTNKTKH 85

Query:    86 YE--EKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQ 125
              E  EK LVIMAGD +PT+LATP      S   G   D NE+
Sbjct:    86 TEMPEKFLVIMAGDVRPTYLATPATRSEQSCTCG---DHNEE 124

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:2124894 GDU1 "glutamine dumper 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 47/132 (35%), Positives = 67/132 (50%)

Query:    27 RSPWHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKLS-----DSRDIESGDKGQEGD-AA 80
             +SPWHSPVPY                    CSYW+LS     D ++++   + + GD AA
Sbjct:    27 QSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSSGEEDGQNVDEEKESRSGDKAA 86

Query:    81 NSVKVYEEKILVIMAGDEKPTFLATPVCTKPS-SFVDGKQIDKNEQGENFEIGEKVKEVT 139
             N    YEEK LVIMAG++ P +LATP   K +    +GK +   E+    E  EK++E  
Sbjct:    87 NGA--YEEKFLVIMAGEDLPRYLATPAMKKCTCGGHEGKMVISQEESVAKE-EEKMRE-- 141

Query:   140 DHEDNHRENQET 151
               E+  ++  ET
Sbjct:   142 GEEEKVKDTGET 153

GO:0005634 "nucleus" evidence=IDA

GO:0010585 "glutamine secretion" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISS;IDA

GO:0080143 "regulation of amino acid export" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:504954872 GDU3 "AT5G57685" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 41/111 (36%), Positives = 51/111 (45%)

Query:    28 SPWHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKLSD----------SRDIESGDKGQEG 77
             SPWHSPVPY                    CSYW+LS            RD+E GD   + 
Sbjct:    26 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVGDVKPDK 85

Query:    78 DAANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGEN 128
              A   V +  EK LVIMAG+ KPT+LATP   K  +  D    D + +G +
Sbjct:    86 TAVKPVAL-PEKFLVIMAGNVKPTYLATP-SVKTCTCDDDDDEDDDVEGSD 134

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0016021 "integral to membrane" evidence=RCA

GO:0032940 "secretion by cell" evidence=ISS

GO:0080143 "regulation of amino acid export" evidence=IMP

GO:0009615 "response to virus" evidence=IMP

GO:0019048 "virus-host interaction" evidence=IMP

TAIR|locus:1005716497 GDU6 "AT3G30725" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 31/90 (34%), Positives = 40/90 (44%)

Query:    30 WHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKLSDSRDI----ESGDKGQEGDAANSVKV 85
             W SPVPY                    C++ K S S +     E  D G + DA    + 
Sbjct:    10 WKSPVPYLFGGLFLLVLLIALALLSLVCTHQKPSSSSNNNHMDEEDDVGDK-DAKPITRE 68

Query:    86 YEEKILVIMAGDEKPTFLATPVCTKPSSFV 115
             Y  KI+VI+AGD KPT LA PV   P + +
Sbjct:    69 YLPKIVVILAGDNKPTCLAVPVVVPPPTSI 98


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.128   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       123   0.00091  102 3  11 23  0.48    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.24u 0.11s 15.35t   Elapsed:  00:00:01
  Total cpu time:  15.24u 0.11s 15.35t   Elapsed:  00:00:01
  Start:  Thu May  9 23:41:25 2013   End:  Thu May  9 23:41:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0080143 "regulation of amino acid export" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S8A0	GDU4_ARATH	No assigned EC number	0.5426	0.7421	0.7564	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	88.8
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	85.83
TIGR00847	51	ccoS cytochrome oxidase maturation protein, cbb3-t	82.52
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	80.64

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=88.80  E-value=0.26  Score=37.80  Aligned_cols=37  Identities=32%  Similarity=0.315  Sum_probs=31.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042254           28 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSD   64 (159)
Q Consensus        28 s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~K~ss   64 (159)
                      +..-+=.|||-+|=+++|.||-++|+.-.|.+||.+.
T Consensus        36 S~~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~   72 (98)
T PF07204_consen   36 SSFVAYWPYLAAGGGLILILIIIALVCCCRAKHKTSA   72 (98)
T ss_pred             ehHHhhhHHhhccchhhhHHHHHHHHHHhhhhhhhHh
Confidence            5566678999999999999999998888888888654

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=85.83  E-value=1  Score=35.23  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=24.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254           28 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKL   62 (159)
Q Consensus        28 s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~K~   62 (159)
                      .....|. .....|++|.|+|++.|||+-|-+|+.
T Consensus        59 h~fs~~~-i~~Ii~gv~aGvIg~Illi~y~irR~~   92 (122)
T PF01102_consen   59 HRFSEPA-IIGIIFGVMAGVIGIILLISYCIRRLR   92 (122)
T ss_dssp             SSSS-TC-HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCccccc-eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555565 455678999999999999988887643

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type

Probab=82.52  E-value=3.1  Score=28.33  Aligned_cols=34  Identities=12%  Similarity=0.272  Sum_probs=23.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 042254           34 VPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIES   70 (159)
Q Consensus        34 vPYLFgGLA~MLgLIAvALLILACSy~K~ss~~d~e~   70 (159)
                      +-|+..+++++||+|+++.++.+   -|+..++|.|+
T Consensus         3 il~~LIpiSl~l~~~~l~~f~Wa---vk~GQfDDle~   36 (51)
T TIGR00847         3 ILTILIPISLLLGGVGLVAFLWS---LKSGQYDDLKG   36 (51)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH---HccCCCCCCcc
Confidence            45888899999888887766655   24445555554

CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=80.64  E-value=3.5  Score=26.93  Aligned_cols=28  Identities=18%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042254           37 LFGGLAAMLGLIAFALLILACSYWKLSD   64 (159)
Q Consensus        37 LFgGLA~MLgLIAvALLILACSy~K~ss   64 (159)
                      ..+|..+-|.+|.+..++-+|-|+|...
T Consensus         8 IIv~V~vg~~iiii~~~~YaCcykk~~~   35 (38)
T PF02439_consen    8 IIVAVVVGMAIIIICMFYYACCYKKHRR   35 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            4567777888889999999999999654

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	82.13

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=82.13  E-value=3.9  Score=27.23  Aligned_cols=33  Identities=18%  Similarity=0.463  Sum_probs=19.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHH---HhhhcccCCC
Q 042254           33 PVPYLFGGLAAMLGLIAFALLIL---ACSYWKLSDS   65 (159)
Q Consensus        33 PvPYLFgGLA~MLgLIAvALLIL---ACSy~K~ss~   65 (159)
                      ++|+-..-++++.||+-++|+++   -|-+.|+...
T Consensus         9 ~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~   44 (54)
T 2knc_A            9 AIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP   44 (54)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence            45555555666666666665554   4666665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00