Citrus Sinensis ID: 042255

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MELKASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPKDEAEAPAPSSASRLYLASGVALAGFTAMAFI
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHcccccccHHHccccccccccccccccccccccccEEEEEEEccccEEEEcccccccccccEEEccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHcccccEEEEEEccHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHcccccEEEEEEEcccccccccEEEEEEEccccEEEEEccccccccccEEEEEEEEcccEEEEEEEcccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHcccccccccHccccccccHHHHHHHHHHHHHHHEEEEEEEc
Coil and Loop (DISEMBL)
MELKASSSLVVLTALVLLFSsssvsvngFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAvdnssigglndrpvdeIKNILSVHVILdyydmnklkklpktsswtTMFQstgnandkqgyinctrlpgeqfvfgssvknsppvaKFVKSVfsqpfnisvlqvsqpivapglgdvilppppppytpppamppkasrkksnasapvaegdddefapsdspieapveapapepveapaqsppepkdeaeapapssasrLYLASGVALAGFTAMAFI
Flexible Loop (DISEMBL)
MELKASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNeainkrktitvlavdnssigglndrpvdeIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPKDEAEAPAPSSASRLYLASGVALAGFTAMAFI
Low Complexity Region (SEG)
MELKAssslvvltalvllfssssvsvNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILppppppytpppamppKASRKKSNASAPVAEGDDDEFAPSDspieapveapapepveapaqsppepkdeaeapapssasRLYLASGVALAGFTAMAFI
Disordered region (IsUnstruct)
********LVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDV*********************************************************************************LYLASGVALAGFTAM***
Disordered Region (DISOPRED)
**********VLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPI*****************************************************************************************LYLASGVALAGFTAMAFI
Disordered Region (DISEMBL)
********LVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPPPPPPYTPP*****************************DSPIEAPVE*****************************SRLYLASGVALAGFTAMAFI
Disordered Region (DISPRO)
****ASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDV************************************************VEA**PEPVEAPAQSPPEPKDEAEAPAPSSASRLYLASGVALAGFTAMAFI
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELKASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPKDEAEAPAPSSASRLYLASGVALAGFTAMAFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q9ZQ23	280	Fasciclin-like arabinogal	yes	no	0.957	0.957	0.434	1e-42
O49586	278	Fasciclin-like arabinogal	no	no	0.860	0.866	0.373	2e-32
Q9SU13	403	Fasciclin-like arabinogal	no	no	0.603	0.419	0.426	3e-32
Q9LTW9	255	Fasciclin-like arabinogal	no	no	0.821	0.901	0.369	4e-31
O22126	420	Fasciclin-like arabinogal	no	no	0.621	0.414	0.415	2e-29
Q9LZX4	422	Fasciclin-like arabinogal	no	no	0.642	0.426	0.419	2e-25
Q9FM65	424	Fasciclin-like arabinogal	no	no	0.532	0.351	0.376	2e-24
Q9SNC3	420	Fasciclin-like arabinogal	no	no	0.582	0.388	0.308	7e-11

>sp|Q9ZQ23|FLA3_ARATH Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana GN=FLA3 PE=2 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/283 (43%), Positives = 176/283 (62%), Gaps = 15/283 (5%)

Query: 1   MELKASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKR 60
           M LK SSSL+ LT   +L + SS+ V+  +I ++L  +P     ++LL++T+L   INKR
Sbjct: 1   MGLKVSSSLLCLT---ILLAVSSI-VSAVNITRVLEKYPEFSTMTELLAKTELTPIINKR 56

Query: 61  KTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSS-WTTMFQSTG 119
           +TITVLA++N +IG ++ RP +E+KNIL  HV+LDY+D  KLK L + S+  TT++QSTG
Sbjct: 57  QTITVLALNNDAIGSISGRPEEEVKNILMNHVVLDYFDELKLKALKEKSTLLTTLYQSTG 116

Query: 120 NANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLG 179
               + G++NCT+  G+ + FGS VK +P  A+++ +VF  P+N+SV+Q+S PIVAPGLG
Sbjct: 117 LGQQQNGFLNCTKSNGKIY-FGSGVKGAPQTAEYITTVFRNPYNLSVVQISMPIVAPGLG 175

Query: 180 DVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDE----FAPSDSPIEAPVEAPAP 235
             +  PPPPP + PPA  PK        +    EGD  +     AP  +P  AP E+ +P
Sbjct: 176 SPVKVPPPPPMSSPPAPSPKKGAATPAPAP-ADEGDYADAPPGLAPETAPASAPSESDSP 234

Query: 236 EPVEAPAQSPPEPKDEA-EAPAPSSASRLYLASGVALA-GFTA 276
            P  AP +S  +    A EA  PSSAS   L+ G  L  GF A
Sbjct: 235 AP--APDKSGKKKMAAADEAEPPSSASNTGLSFGAVLVLGFVA 275

May be a cell surface adhesion protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O49586|FLA5_ARATH Fasciclin-like arabinogalactan protein 5 OS=Arabidopsis thaliana GN=FLA5 PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 139/265 (52%), Gaps = 24/265 (9%)

Query: 26  VNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIK 85
           V   +I      +       DL  +TKL  AI+K +TITVLAV N +I  + +R   E++
Sbjct: 22  VTANNITLAFQKYSKFSTMRDLFIKTKLIAAIDKYQTITVLAVSNDAISSITNRSEVELR 81

Query: 86  NILSVHVILDYYDMNKLKKL-PKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSV 144
           NIL  HVILDYYD  KL+ +  K+   TT++Q+TG      G++N ++  G  + FGS V
Sbjct: 82  NILMTHVILDYYDELKLQGMREKSIMLTTLYQTTGLGEQMNGFLNVSKSKGRVY-FGSEV 140

Query: 145 KNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPPPPP-----PYTPP------ 193
           KNSP  A++V +V+  P+N+S++Q++ PIVAPGL   I PPPPP     PY  P      
Sbjct: 141 KNSPLNAEYVSTVYHNPYNLSIIQITMPIVAPGLSLAIFPPPPPYVHVAPYPTPMDASVV 200

Query: 194 PAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAP----EPVEAPAQSPPEPK 249
           PA  P A     +++ P         AP+    EA   APAP    E +EA  ++  +P 
Sbjct: 201 PAPGPAADDNSPDSAVPKTPP-----APATDTPEADSPAPAPSADNEKIEAADKA--KPS 253

Query: 250 DEAEAPAPSSASRLYLASGVALAGF 274
             A     S    L LA   + AGF
Sbjct: 254 SSASKAGWSFDVILLLAFLASFAGF 278

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU13|FLA2_ARATH Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 113/176 (64%), Gaps = 7/176 (3%)

Query: 4   KASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTI 63
           +A+++LV++  L L  S S    N  +I +IL+  P+   F+  LS T L + IN+R+TI
Sbjct: 6   RAATALVLIFQLHLFLSLS----NAHNITRILAKDPDFSTFNHYLSATHLADEINRRQTI 61

Query: 64  TVLAVDNSSIGGL--NDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSWT-TMFQSTGN 120
           TVLAVDNS++  +  N   + +I+NILS+HV++DY+   KL ++   S+ T +MFQSTG+
Sbjct: 62  TVLAVDNSAMSSILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGS 121

Query: 121 ANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAP 176
           A    GYIN T + G +  FG    +S   A +VKSVF +P+NISVL +SQ + +P
Sbjct: 122 ATGTSGYINITDIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNISVLHISQVLTSP 177

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTW9|FLA14_ARATH Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana GN=FLA14 PE=2 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 133/252 (52%), Gaps = 22/252 (8%)

Query: 6   SSSLVVLT---ALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKT 62
           SSSL +     A   L++SS    N F+I  IL+ H +   F+ LLS+T+L   INKR+T
Sbjct: 2   SSSLTIFFFFFASTFLYTSS----NSFNITNILNEHDDFSNFNQLLSETQLASTINKRQT 57

Query: 63  ITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKL-PKTSSWTTMFQSTGNA 121
           ITVL V N ++  L+ +P   IK ILS+H++LDYYD  KLK L  KT   TT+FQS+G A
Sbjct: 58  ITVLVVSNGALSSLSGQPTSVIKKILSLHIVLDYYDQKKLKNLSKKTVLLTTLFQSSGLA 117

Query: 122 NDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDV 181
             +QG++N T +      FGS+V  S   A+   +V + PFNISVL +S  I+    GD 
Sbjct: 118 RGQQGFLNATVMKNGDVAFGSAVPGSSLDAQLQDTVAALPFNISVLHISSAIMIDVKGD- 176

Query: 182 ILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAP 241
                     P  +     S     A +P  +G D +  PS +P      A A EP E  
Sbjct: 177 --------NAPTASPLSPVSSPPRPAESPNDDGQDFDEPPSSAP-----GAAADEPSENA 223

Query: 242 AQSPPEPKDEAE 253
             +    +++++
Sbjct: 224 GSANGVSRNDSQ 235

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22126|FLA8_ARATH Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 114/183 (62%), Gaps = 9/183 (4%)

Query: 8   SLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLA 67
           SL+  T  +L F+S+   V+  +I +IL++ P+  +F+  LSQTKL + IN R TITVL 
Sbjct: 8   SLLAFTFSLLAFAST---VSSHNITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLV 64

Query: 68  VDNSSIGGL-NDRPVDEIKNILSVHVILDYYDMNKLKKLPK-TSSWTTMFQSTGNANDKQ 125
           ++N ++  L    P+  IK+ LS+ V+LDYYD  KL K+ K T+  TT++Q+TGNA    
Sbjct: 65  LNNGAMSALAGKHPLSVIKSALSLLVLLDYYDPQKLHKISKGTTLSTTLYQTTGNAPGNL 124

Query: 126 GYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPP 185
           G++N T L G +  FGS+   S   + + KSV   P+NIS+L++  PI+APG    +L  
Sbjct: 125 GFVNITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNISILEIDAPIIAPG----VLTA 180

Query: 186 PPP 188
           P P
Sbjct: 181 PAP 183

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZX4|FLA10_ARATH Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 115/186 (61%), Gaps = 6/186 (3%)

Query: 5   ASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTIT 64
           A+S    L A  L   + + +V+G +I +ILS+ P   +F++ LSQTKL + IN R TIT
Sbjct: 2   ATSRAFTLFAFTLSLLTVASTVSGHNITQILSDTPEYSSFNNYLSQTKLADEINSRTTIT 61

Query: 65  VLAVDNSSIGGL-NDRPVDEIKNILSVHVILDYYDMNKLKKLPK-TSSWTTMFQSTGNAN 122
           VL ++N ++  L    P+  +KN LS+ V+LDYYD  KL +L K T+  TT++Q+TG+A 
Sbjct: 62  VLVLNNGAMSSLAGKHPLSVVKNALSLLVLLDYYDPLKLHQLSKGTTLTTTLYQTTGHAL 121

Query: 123 DKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVI 182
              G++N T L G +  FGS+   S   + + KSV   P+NISVL+++ PI+APG    I
Sbjct: 122 GNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYNISVLEINAPIIAPG----I 177

Query: 183 LPPPPP 188
           L  P P
Sbjct: 178 LTAPAP 183

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM65|FLA1_ARATH Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 96/154 (62%), Gaps = 5/154 (3%)

Query: 23  SVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDR--P 80
           +   +  ++ ++L+NHP+  +FS  L+QT L + IN+R+TITV AVDN+++  L  +   
Sbjct: 19  TTQTHAHNVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALTSKGYT 78

Query: 81  VDEIKNILSVHVILDYYDMNKLKKLPKTSSW-TTMFQSTGNANDKQGYINCTRLPGEQFV 139
           +  +KNILS+HV+LDY+   KL ++   S+   T+FQ+TG A    G++N T L G +  
Sbjct: 79  LSTLKNILSLHVLLDYFGTKKLHQIRDGSALAATLFQATGAAPGTSGFVNITDLRGGKVG 138

Query: 140 FGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPI 173
           FG    +      FVKS+   P+NIS++Q+S+ +
Sbjct: 139 FGPDGGDLSSF--FVKSIEEVPYNISIIQISRVL 170

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNC3|FLA4_ARATH Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 15/178 (8%)

Query: 30  DIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGG----LNDR-PVDEI 84
           ++  +LS+ PNL +FS+LL  + +   ++ R ++T+LAV NS        L  R P   +
Sbjct: 30  NVTAVLSSFPNLSSFSNLLVSSGIAAELSGRNSLTLLAVPNSQFSSASLDLTRRLPPSAL 89

Query: 85  KNILSVHVILDYYDMNKLKKL-PKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFV-FGS 142
            ++L  HV+L +   + L+++ P  S+ TT+++++G      G +N TR P    V  GS
Sbjct: 90  ADLLRFHVLLQFLSDSDLRRIPPSGSAVTTLYEASGRTFFGSGSVNVTRDPASGSVTIGS 149

Query: 143 SVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGL----GDVILPPPP-PPYTPPPA 195
               +  V K ++   ++P NI+VL V   IV  G+     + + PPP     +PPPA
Sbjct: 150 PATKNVTVLKLLE---TKPPNITVLTVDSLIVPTGIDITASETLTPPPTSTSLSPPPA 204


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.130    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,331,385
Number of Sequences: 539616
Number of extensions: 5307788
Number of successful extensions: 71564
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 1626
Number of HSP's that attempted gapping in prelim test: 39096
Number of HSP's gapped (non-prelim): 16920
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)

May be a cell surface adhesion protein that is required for normal cell expansion.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
224121208	302	predicted protein [Populus trichocarpa]	0.960	0.890	0.403	1e-44
224115574	271	predicted protein [Populus trichocarpa]	0.953	0.985	0.438	2e-44
255574109	280	conserved hypothetical protein [Ricinus	0.939	0.939	0.469	3e-42
297825403	279	hypothetical protein ARALYDRAFT_481301 [	0.964	0.967	0.45	8e-42
147791361	305	hypothetical protein VITISV_008126 [Viti	0.860	0.790	0.433	2e-41
225429799	305	PREDICTED: fasciclin-like arabinogalacta	0.842	0.773	0.430	3e-41
157273668	285	fasciclin-like arabinogalactan protein 1	0.617	0.607	0.485	3e-41
15224141	280	fasciclin-like arabinogalactan protein 3	0.957	0.957	0.434	6e-41
449437354	280	PREDICTED: fasciclin-like arabinogalacta	0.564	0.564	0.5	7e-38
212274771	296	uncharacterized protein LOC100191197 pre	0.692	0.655	0.449	9e-38

>gi|224121208|ref|XP_002330770.1| predicted protein [Populus trichocarpa] gi|222872572|gb|EEF09703.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/312 (40%), Positives = 175/312 (56%), Gaps = 43/312 (13%)

Query: 1   MELKASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKR 60
           M+ KASS L +  A + L S+S+     F+  KIL+ +P    F+DLLSQ+ L + +N R
Sbjct: 1   MDSKASSLLFI--AFLCLISTSTA----FNSTKILAQYPEFANFNDLLSQSGLAQEMNSR 54

Query: 61  KTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSW-TTMFQSTG 119
           +TITVL +DN SI GL+ RP+D  K ILS HVILDYYD  KL KL K S+  TT++Q++G
Sbjct: 55  QTITVLVLDNGSIDGLSGRPLDIAKRILSAHVILDYYDQIKLSKLQKASTIVTTLYQASG 114

Query: 120 NANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLG 179
            A+++QG++N +R   E   FGS++K +P VA  VKS++SQP+NISVLQVS+PI  PG+ 
Sbjct: 115 VADNRQGFLNISRT-AEGIKFGSAMKGAPLVASLVKSIYSQPYNISVLQVSEPIETPGIE 173

Query: 180 DVIL-------------PPPPPPYTPPPAMPPKA-------SRKKSNASAPVAEGDDDEF 219
           ++               P P P    PPA PP A       ++  S A AP  EG     
Sbjct: 174 NMAPPPPPGTAAVPKKAPAPAPSTKTPPAAPPTAKTPAKSPAKSPSKAPAPSKEGPS--- 230

Query: 220 APSDSPIEAPVEAPAPEPVEAPAQSPPEPKDEAEA----------PAPSSASRLYLASGV 269
            P+ +P E PV A  P     P    P    EA+           PA +++SR+++A   
Sbjct: 231 TPTKAPAEGPVAADGPVAAGGPVADVPAESPEADTEVAEEAPAVAPAKAASSRMHVAGAT 290

Query: 270 ALAGFTA--MAF 279
            + G  A  M F
Sbjct: 291 VVIGLFACIMGF 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115574|ref|XP_002332090.1| predicted protein [Populus trichocarpa] gi|222874910|gb|EEF12041.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/283 (43%), Positives = 176/283 (62%), Gaps = 16/283 (5%)

Query: 1   MELKASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKR 60
           M+ K SS L +  A++ L SS+S +   F+I KIL+ +P  ++F+DLL+Q+ L + ++ R
Sbjct: 1   MDFKVSSLLFI--AILCLISSTSTA---FNITKILAQYPEFVSFNDLLTQSGLAKEMSSR 55

Query: 61  KTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSW-TTMFQSTG 119
           +TITVLA+DNSSIGGL+ RP+D  K ILS HVILDYYD  KL KL K S+  TT++Q++G
Sbjct: 56  ETITVLALDNSSIGGLSGRPLDIAKRILSAHVILDYYDQIKLSKLKKASTIVTTLYQASG 115

Query: 120 NANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLG 179
            A+D+QG++N +R   E   FGS+VK +P VA  VK V++QP+NISVLQVS+PI APG+ 
Sbjct: 116 AADDRQGFLNISR-TAEGIKFGSAVKGAPLVASLVKPVYAQPYNISVLQVSEPIEAPGIE 174

Query: 180 DVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVE 239
           +   PPPP         P   S  K+ A + V     +   P++SP E PV A  P   +
Sbjct: 175 NNAPPPPPAAVPKKAPAPTAKSPSKAPAPSKV-----EPSTPTESPTEGPVAADGP-VAD 228

Query: 240 APAQSPPEPKDEA-EAPAPSSASRLYLASGVALAGFTA--MAF 279
            P  SP      A E  A +++S+++    V + G  A  M F
Sbjct: 229 VPTASPLADAPMADETTAEAASSQMHAGGAVVVIGLLACMMGF 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574109|ref|XP_002527970.1| conserved hypothetical protein [Ricinus communis] gi|223532596|gb|EEF34382.1| conserved hypothetical protein [Ricinus communis]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/279 (46%), Positives = 173/279 (62%), Gaps = 16/279 (5%)

Query: 1   MELKASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKR 60
           ME K  S L +  AL  +FSS+S +   F+I +ILSN+P+   F+ LL+QT L + IN R
Sbjct: 1   MESKTPSLLFL--ALFCIFSSTSTA---FNITRILSNYPDFSTFNSLLTQTGLAQQINSR 55

Query: 61  KTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSS-WTTMFQSTG 119
           +TITVLAV N +IGG++ +PVD +K ILS HVILDYYD  KL+ + K SS  TT++Q+TG
Sbjct: 56  QTITVLAVSNGAIGGVSGKPVDIVKRILSAHVILDYYDQKKLENIKKQSSILTTLYQTTG 115

Query: 120 NANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLG 179
           +AND+QG++N T+ P    VFGS+VK +P       SV SQP+NISVLQV   I APG+ 
Sbjct: 116 SANDQQGFLNVTKTP-NGIVFGSAVKGAPLTVSLEGSVASQPYNISVLQVGGVIEAPGIE 174

Query: 180 DVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVE 239
           ++  PPPP P T     P   S K    +   A    +E A  D+P EAP  A      +
Sbjct: 175 NMAPPPPPAPKTASAPAPAPTSAKTPAEAPAPAA---EEPAADDAPTEAPTPAAEAPNAD 231

Query: 240 APAQSPPEPK----DE--AEAPAPSSASRLYLASGVALA 272
           AP  SPP+P     DE  A APA S +SRL++   VA+A
Sbjct: 232 APLSSPPQPNSTPADETPAAAPAHSGSSRLHVDGVVAVA 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825403|ref|XP_002880584.1| hypothetical protein ARALYDRAFT_481301 [Arabidopsis lyrata subsp. lyrata] gi|297326423|gb|EFH56843.1| hypothetical protein ARALYDRAFT_481301 [Arabidopsis lyrata subsp. lyrata]

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 126/280 (45%), Positives = 174/280 (62%), Gaps = 10/280 (3%)

Query: 1   MELKASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKR 60
           M LK SSSLV LT   +L   SS+ V+  +I ++L  +P     ++LL++T+L   INKR
Sbjct: 1   MGLKVSSSLVCLT---ILLGVSSI-VSAVNITRVLEKYPEFSTMTELLAKTELTPIINKR 56

Query: 61  KTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSS-WTTMFQSTG 119
           +TITVLA+ N +IG ++ RP +E+KNIL  HVILDY+D  KLK L + S+  TT++QSTG
Sbjct: 57  QTITVLALSNDAIGSISGRPEEELKNILMNHVILDYFDELKLKALKERSTLLTTLYQSTG 116

Query: 120 NANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLG 179
               + G++NCT+  G+ + FGS VK +P  A+++ +VF  P+N+SV+Q+S PIVAPGLG
Sbjct: 117 LGQQQNGFLNCTKSNGKIY-FGSGVKGAPQTAEYITTVFRNPYNLSVVQISMPIVAPGLG 175

Query: 180 DVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPE-PV 238
             +  PPPPP + PPA  PK     + A  P  E D  +  P  +P  AP  AP+ + P 
Sbjct: 176 SPVKVPPPPPMSSPPAPSPKKG-AATPAPGPAEEEDYADAPPGAAPETAPASAPSDDSPA 234

Query: 239 EAPAQSPPEPKDEA-EAPAPSSASRLYLASGVALA-GFTA 276
            AP QS  +    A EA  PSSAS   L+ G  L  GF A
Sbjct: 235 PAPEQSGKKKMAAADEAEPPSSASNAGLSFGAVLVLGFVA 274

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791361|emb|CAN66163.1| hypothetical protein VITISV_008126 [Vitis vinifera]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/279 (43%), Positives = 158/279 (56%), Gaps = 38/279 (13%)

Query: 29  FDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNIL 88
           F+I ++L   P+   F+  LSQT ++  INKR+TITVLAV+N +I  +  + +D+IKNIL
Sbjct: 28  FNITRLLGQFPDFSTFNSYLSQTNISIGINKRQTITVLAVENGAIAPITXKSLDDIKNIL 87

Query: 89  SVHVILDYYDMNKLKKLP-KTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNS 147
            +HVILDYYD+ KL KL  KT+  TT+FQ+TG AN +QG++N T L   Q VFGS+V  S
Sbjct: 88  RLHVILDYYDVAKLHKLSNKTALLTTLFQATGQANGQQGFLNVTELSSGQVVFGSAVAGS 147

Query: 148 PPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILP-------------------PPPP 188
              AK VK+V SQPFNISVLQ+S PI+APG+G V+                     P   
Sbjct: 148 GLQAKLVKTVASQPFNISVLQISTPILAPGIGGVVAVPVSPPPSGSPAAAPKAAEGPGAS 207

Query: 189 PYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPV-EAPAQSPPE 247
             TPPPA  P       +A AP A  DD   APS + + A     A  P  +AP  SPP 
Sbjct: 208 KTTPPPAKAP-------SAEAP-APSDDSAEAPSFADVPAADGPGADAPAGDAPLSSPPM 259

Query: 248 P------KDEAEAPAPSSASRLYLASGVALAGFTAMAFI 280
           P       D + A AP SA R    + VA+   T +A +
Sbjct: 260 PAADGPVADGSHADAP-SADRTSGTTQVAIG--TCLAIV 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429799|ref|XP_002282846.1| PREDICTED: fasciclin-like arabinogalactan protein 14 [Vitis vinifera]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/274 (43%), Positives = 155/274 (56%), Gaps = 38/274 (13%)

Query: 29  FDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNIL 88
           F+I ++L   P+   F+  LSQT ++  IN+R+TITVLAV+N +I  +  + +D+IKNIL
Sbjct: 28  FNITRLLGQFPDFSTFNSYLSQTNISIGINRRQTITVLAVENGAIAPITGKSMDDIKNIL 87

Query: 89  SVHVILDYYDMNKLKKLP-KTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNS 147
            +HVILDYYD+ KL KL  KT+  TT+FQ+TG AN +QG++N T L   Q VFGS+V  S
Sbjct: 88  RLHVILDYYDVAKLHKLSNKTALLTTLFQATGQANGQQGFLNVTELSSGQVVFGSAVAGS 147

Query: 148 PPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILP-------------------PPPP 188
              AK VK+V SQPFNISVLQ+S PI+APG+G V+                     P   
Sbjct: 148 GLQAKLVKTVASQPFNISVLQISTPILAPGIGGVVAVPVSPPPSGSPAAAPKAAEGPGAS 207

Query: 189 PYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPV-EAPAQSPPE 247
             TPPPA  P       +A AP A  DD   APS + + A     A  P  +AP  SPP 
Sbjct: 208 KTTPPPAKAP-------SAEAP-APSDDSAEAPSFADVPAADGPGADAPAGDAPLSSPPM 259

Query: 248 P------KDEAEAPAPS---SASRLYLASGVALA 272
           P       D + A APS   ++    +A G  LA
Sbjct: 260 PAADGPVADGSHADAPSADRTSGTTQVAIGTCLA 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157273668|gb|ABV27488.1| fasciclin-like arabinogalactan protein 17 [Gossypium hirsutum]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 126/177 (71%), Gaps = 4/177 (2%)

Query: 9   LVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAV 68
           L  + A++L  +++  ++N   I K L+ + +    SDL  +TKL +AIN+R+TIT+LA+
Sbjct: 9   LFFIAAILLPLATTCTALN---ITKSLAPYSDYSTLSDLFRKTKLTDAINRRQTITILAL 65

Query: 69  DNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSSW-TTMFQSTGNANDKQGY 127
           DNSSI  + DR  DE++ IL  H+ILDYYD  K++KL K S+  TT++Q+TG+A ++QG+
Sbjct: 66  DNSSIQSITDRSSDELRKILMNHIILDYYDRQKIQKLGKKSALLTTLYQTTGSAINQQGF 125

Query: 128 INCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILP 184
           +N TR+   + VFGS+VK +P V K + SV SQPFN+SVL +S PIVAPG+GD IL 
Sbjct: 126 VNITRIARGEVVFGSAVKGAPLVGKLLGSVISQPFNLSVLHISTPIVAPGIGDAILA 182

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224141|ref|NP_180021.1| fasciclin-like arabinogalactan protein 3 [Arabidopsis thaliana] gi|75216146|sp|Q9ZQ23.1|FLA3_ARATH RecName: Full=Fasciclin-like arabinogalactan protein 3; Flags: Precursor gi|4337202|gb|AAD18116.1| hypothetical protein [Arabidopsis thaliana] gi|45752664|gb|AAS76230.1| At2g24450 [Arabidopsis thaliana] gi|46402450|gb|AAS92327.1| At2g24450 [Arabidopsis thaliana] gi|110736831|dbj|BAF00374.1| predicted GPI-anchored protein [Arabidopsis thaliana] gi|110739192|dbj|BAF01512.1| predicted GPI-anchored protein [Arabidopsis thaliana] gi|330252485|gb|AEC07579.1| fasciclin-like arabinogalactan protein 3 [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 123/283 (43%), Positives = 176/283 (62%), Gaps = 15/283 (5%)

Query: 1   MELKASSSLVVLTALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKR 60
           M LK SSSL+ LT   +L + SS+ V+  +I ++L  +P     ++LL++T+L   INKR
Sbjct: 1   MGLKVSSSLLCLT---ILLAVSSI-VSAVNITRVLEKYPEFSTMTELLAKTELTPIINKR 56

Query: 61  KTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSS-WTTMFQSTG 119
           +TITVLA++N +IG ++ RP +E+KNIL  HV+LDY+D  KLK L + S+  TT++QSTG
Sbjct: 57  QTITVLALNNDAIGSISGRPEEEVKNILMNHVVLDYFDELKLKALKEKSTLLTTLYQSTG 116

Query: 120 NANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLG 179
               + G++NCT+  G+ + FGS VK +P  A+++ +VF  P+N+SV+Q+S PIVAPGLG
Sbjct: 117 LGQQQNGFLNCTKSNGKIY-FGSGVKGAPQTAEYITTVFRNPYNLSVVQISMPIVAPGLG 175

Query: 180 DVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDE----FAPSDSPIEAPVEAPAP 235
             +  PPPPP + PPA  PK        +    EGD  +     AP  +P  AP E+ +P
Sbjct: 176 SPVKVPPPPPMSSPPAPSPKKGAATPAPAP-ADEGDYADAPPGLAPETAPASAPSESDSP 234

Query: 236 EPVEAPAQSPPEPKDEA-EAPAPSSASRLYLASGVALA-GFTA 276
            P  AP +S  +    A EA  PSSAS   L+ G  L  GF A
Sbjct: 235 AP--APDKSGKKKMAAADEAEPPSSASNTGLSFGAVLVLGFVA 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437354|ref|XP_004136457.1| PREDICTED: fasciclin-like arabinogalactan protein 14-like [Cucumis sativus] gi|449505538|ref|XP_004162501.1| PREDICTED: fasciclin-like arabinogalactan protein 14-like [Cucumis sativus]

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 116/164 (70%), Gaps = 6/164 (3%)

Query: 17  LLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGL 76
           LLFS++S     F+I K+LS  P+   F+DLL+QTKL + IN RKTIT+LAVDN +I G+
Sbjct: 15  LLFSAAS----AFNITKLLSQFPDFTNFNDLLTQTKLADDINSRKTITILAVDNGAISGI 70

Query: 77  NDRPVDEIKNILSVHVILDYYDMNKLKKLP--KTSSWTTMFQSTGNANDKQGYINCTRLP 134
           + +P+D +K ILSVHVILDYYD+ KL KL    T+  TT++Q++G A ++QG++  T + 
Sbjct: 71  SGKPLDVMKRILSVHVILDYYDVQKLGKLSSDNTTVLTTLYQTSGTATNEQGFLKVTLIN 130

Query: 135 GEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGL 178
             +  F S+VK +   +K VKSV SQP+NI VLQ++ PI  PG+
Sbjct: 131 EGEVAFKSAVKGATADSKLVKSVVSQPYNIVVLQITSPIQVPGI 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212274771|ref|NP_001130104.1| uncharacterized protein LOC100191197 precursor [Zea mays] gi|194688294|gb|ACF78231.1| unknown [Zea mays] gi|413936275|gb|AFW70826.1| hypothetical protein ZEAMMB73_792931 [Zea mays]

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 89/198 (44%), Positives = 123/198 (62%), Gaps = 4/198 (2%)

Query: 14  ALVLLFSSSSVSVNGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSI 73
           ALVL+ +  S     F+I ++L    +   F++LLSQTKL E IN+R+TITVLAVDN + 
Sbjct: 9   ALVLILACFSSPAAAFNITRLLGQFSDFTTFNNLLSQTKLAEDINRRQTITVLAVDNGAA 68

Query: 74  GGLNDRPVDEIKNILSVHVILDYYDMNKLKKLPKTSS-WTTMFQSTGNANDKQGYINCTR 132
           GG++  P D  + +LS+HV+LDYYD  KL+ +   S+  TTMFQS+G A D+ G++N T+
Sbjct: 69  GGISSLPSDVQRKVLSMHVVLDYYDTAKLEAIKNHSALLTTMFQSSGQATDRMGFLNFTK 128

Query: 133 LPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLG---DVILPPPPPP 189
                 VFGS+   +   +  VKSV S+P+NISVLQVS PIV PG+G   D      PPP
Sbjct: 129 RSDGVMVFGSAQPGAQMTSHMVKSVTSRPYNISVLQVSAPIVPPGVGGSADSGKGGAPPP 188

Query: 190 YTPPPAMPPKASRKKSNA 207
           +      P  A++ K  A
Sbjct: 189 HKATAPAPGPATKGKKGA 206

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2061107	280	FLA3 "AT2G24450" [Arabidopsis	0.542	0.542	0.467	1.5e-35
TAIR|locus:2087715	255	FLA14 "AT3G12660" [Arabidopsis	0.55	0.603	0.458	6.2e-30
TAIR|locus:2135818	403	FLA2 "FASCICLIN-like arabinoga	0.535	0.372	0.444	2.4e-28
TAIR|locus:2101841	422	FLA10 "FASCICLIN-like arabinog	0.542	0.360	0.441	3.1e-28
TAIR|locus:2050822	420	FLA8 "FASCICLIN-like arabinoga	0.532	0.354	0.437	8.2e-28
TAIR|locus:2128201	278	FLA5 "AT4G31370" [Arabidopsis	0.471	0.474	0.470	1.7e-27
TAIR|locus:2162197	424	FLA1 "FASCICLIN-like arabinoga	0.5	0.330	0.4	1.8e-23
TAIR|locus:2075185	420	SOS5 "salt overly sensitive 5"	0.521	0.347	0.307	1.9e-12

TAIR|locus:2061107 FLA3 "AT2G24450" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 72/154 (46%), Positives = 111/154 (72%)

Query:    30 DIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNILS 89
             +I ++L  +P     ++LL++T+L   INKR+TITVLA++N +IG ++ RP +E+KNIL 
Sbjct:    26 NITRVLEKYPEFSTMTELLAKTELTPIINKRQTITVLALNNDAIGSISGRPEEEVKNILM 85

Query:    90 VHVILDYYDMNKLKKLPKTSSW-TTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSP 148
              HV+LDY+D  KLK L + S+  TT++QSTG    + G++NCT+  G+ + FGS VK +P
Sbjct:    86 NHVVLDYFDELKLKALKEKSTLLTTLYQSTGLGQQQNGFLNCTKSNGKIY-FGSGVKGAP 144

Query:   149 PVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVI 182
               A+++ +VF  P+N+SV+Q+S PIVAPGLG  +
Sbjct:   145 QTAEYITTVFRNPYNLSVVQISMPIVAPGLGSPV 178

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:2087715 FLA14 "AT3G12660" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 71/155 (45%), Positives = 97/155 (62%)

Query:    27 NGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKN 86
             N F+I  IL+ H +   F+ LLS+T+L   INKR+TITVL V N ++  L+ +P   IK 
Sbjct:    22 NSFNITNILNEHDDFSNFNQLLSETQLASTINKRQTITVLVVSNGALSSLSGQPTSVIKK 81

Query:    87 ILSVHVILDYYDMNKLKKLPK-TSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVK 145
             ILS+H++LDYYD  KLK L K T   TT+FQS+G A  +QG++N T +      FGS+V 
Sbjct:    82 ILSLHIVLDYYDQKKLKNLSKKTVLLTTLFQSSGLARGQQGFLNATVMKNGDVAFGSAVP 141

Query:   146 NSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGD 180
              S   A+   +V + PFNISVL +S  I+    GD
Sbjct:   142 GSSLDAQLQDTVAALPFNISVLHISSAIMIDVKGD 176

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2135818 FLA2 "FASCICLIN-like arabinogalactan 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 68/153 (44%), Positives = 100/153 (65%)

Query:    27 NGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGL--NDRPVDEI 84
             N  +I +IL+  P+   F+  LS T L + IN+R+TITVLAVDNS++  +  N   + +I
Sbjct:    25 NAHNITRILAKDPDFSTFNHYLSATHLADEINRRQTITVLAVDNSAMSSILSNGYSLYQI 84

Query:    85 KNILSVHVILDYYDMNKLKKLPKTSSWT-TMFQSTGNANDKQGYINCTRLPGEQFVFGSS 143
             +NILS+HV++DY+   KL ++   S+ T +MFQSTG+A    GYIN T + G +  FG  
Sbjct:    85 RNILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGSATGTSGYINITDIKGGKVAFGVQ 144

Query:   144 VKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAP 176
               +S   A +VKSVF +P+NISVL +SQ + +P
Sbjct:   145 DDDSKLTAHYVKSVFEKPYNISVLHISQVLTSP 177

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2101841 FLA10 "FASCICLIN-like arabinogalactan-protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 68/154 (44%), Positives = 103/154 (66%)

Query:    27 NGFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDR-PVDEIK 85
             +G +I +ILS+ P   +F++ LSQTKL + IN R TITVL ++N ++  L  + P+  +K
Sbjct:    24 SGHNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLAGKHPLSVVK 83

Query:    86 NILSVHVILDYYDMNKLKKLPK-TSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSV 144
             N LS+ V+LDYYD  KL +L K T+  TT++Q+TG+A    G++N T L G +  FGS+ 
Sbjct:    84 NALSLLVLLDYYDPLKLHQLSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAA 143

Query:   145 KNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGL 178
               S   + + KSV   P+NISVL+++ PI+APG+
Sbjct:   144 PGSKLDSSYTKSVKQIPYNISVLEINAPIIAPGI 177

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2050822 FLA8 "FASCICLIN-like arabinogalactan protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 66/151 (43%), Positives = 100/151 (66%)

Query:    30 DIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDR-PVDEIKNIL 88
             +I +IL++ P+  +F+  LSQTKL + IN R TITVL ++N ++  L  + P+  IK+ L
Sbjct:    27 NITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNGAMSALAGKHPLSVIKSAL 86

Query:    89 SVHVILDYYDMNKLKKLPK-TSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNS 147
             S+ V+LDYYD  KL K+ K T+  TT++Q+TGNA    G++N T L G +  FGS+   S
Sbjct:    87 SLLVLLDYYDPQKLHKISKGTTLSTTLYQTTGNAPGNLGFVNITDLKGGKVGFGSAASGS 146

Query:   148 PPVAKFVKSVFSQPFNISVLQVSQPIVAPGL 178
                + + KSV   P+NIS+L++  PI+APG+
Sbjct:   147 KLDSSYTKSVKQIPYNISILEIDAPIIAPGV 177

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2128201 FLA5 "AT4G31370" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 63/134 (47%), Positives = 92/134 (68%)

Query:    46 DLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDRPVDEIKNILSVHVILDYYDMNKLKKL 105
             DL  +TKL  AI+K +TITVLAV N +I  + +R   E++NIL  HVILDYYD  KL+ +
Sbjct:    42 DLFIKTKLIAAIDKYQTITVLAVSNDAISSITNRSEVELRNILMTHVILDYYDELKLQGM 101

Query:   106 -PKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNI 164
               K+   TT++Q+TG      G++N ++  G  + FGS VKNSP  A++V +V+  P+N+
Sbjct:   102 REKSIMLTTLYQTTGLGEQMNGFLNVSKSKGRVY-FGSEVKNSPLNAEYVSTVYHNPYNL 160

Query:   165 SVLQVSQPIVAPGL 178
             S++Q++ PIVAPGL
Sbjct:   161 SIIQITMPIVAPGL 174

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2162197 FLA1 "FASCICLIN-like arabinogalactan 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 58/145 (40%), Positives = 93/145 (64%)

Query:    30 DIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLNDR--PVDEIKNI 87
             ++ ++L+NHP+  +FS  L+QT L + IN+R+TITV AVDN+++  L  +   +  +KNI
Sbjct:    26 NVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALTSKGYTLSTLKNI 85

Query:    88 LSVHVILDYYDMNKLKKLPKTSSWT-TMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKN 146
             LS+HV+LDY+   KL ++   S+   T+FQ+TG A    G++N T L G +  FG     
Sbjct:    86 LSLHVLLDYFGTKKLHQIRDGSALAATLFQATGAAPGTSGFVNITDLRGGKVGFGPD--G 143

Query:   147 SPPVAKFVKSVFSQPFNISVLQVSQ 171
                 + FVKS+   P+NIS++Q+S+
Sbjct:   144 GDLSSFFVKSIEEVPYNISIIQISR 168

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2075185 SOS5 "salt overly sensitive 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 48/156 (30%), Positives = 85/156 (54%)

Query:    30 DIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGG----LNDR-PVDEI 84
             ++  +LS+ PNL +FS+LL  + +   ++ R ++T+LAV NS        L  R P   +
Sbjct:    30 NVTAVLSSFPNLSSFSNLLVSSGIAAELSGRNSLTLLAVPNSQFSSASLDLTRRLPPSAL 89

Query:    85 KNILSVHVILDYYDMNKLKKLPKT-SSWTTMFQSTGNANDKQGYINCTRLPGEQFV-FGS 142
              ++L  HV+L +   + L+++P + S+ TT+++++G      G +N TR P    V  GS
Sbjct:    90 ADLLRFHVLLQFLSDSDLRRIPPSGSAVTTLYEASGRTFFGSGSVNVTRDPASGSVTIGS 149

Query:   143 SVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGL 178
                 +  V K +++   +P NI+VL V   IV  G+
Sbjct:   150 PATKNVTVLKLLET---KPPNITVLTVDSLIVPTGI 182


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      280       206   0.00097  111 3  11 22  0.38    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.06u 0.19s 17.25t   Elapsed:  00:00:01
  Total cpu time:  17.06u 0.19s 17.25t   Elapsed:  00:00:01
  Start:  Thu May  9 23:43:24 2013   End:  Thu May  9 23:43:25 2013

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0007155 "cell adhesion" evidence=ISS

GO:0009651 "response to salt stress" evidence=IMP

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0030247 "polysaccharide binding" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZQ23	FLA3_ARATH	No assigned EC number	0.4346	0.9571	0.9571	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	3e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	5e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.004
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.004
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.004
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 184 PPPPPPYTPPPAMP-PKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPA 242
            P P     P   P P  +      +AP         A + S   AP  A APEP  APA
Sbjct: 422 APAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPA 481

Query: 243 QSP---PEPKDEAEAPAPSSAS 261
            +P   P P     APA  +A 
Sbjct: 482 PAPPAAPAPAAAPAAPAAPAAP 503

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
           P P P   P P  P   +      S P A     + AP+ +    P  APAP P  APA 
Sbjct: 431 PAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA- 489

Query: 244 SPPEPKDEAEAPAPSSAS 261
               P   A   AP+ A 
Sbjct: 490 PAAAPAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 24/116 (20%), Positives = 33/116 (28%), Gaps = 6/116 (5%)

Query: 147 SPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSN 206
            P  A    S  +     + +   Q    P       PP   P   P    P+ + +   
Sbjct: 371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPP------PPASAPQQAPAVPLPETTSQLLA 424

Query: 207 ASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPKDEAEAPAPSSASR 262
           A   +        A    P  A    P    +E  A   P P    +APA   A R
Sbjct: 425 ARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480

Length = 647

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 24/82 (29%), Positives = 27/82 (32%)

Query: 168 QVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIE 227
           QV              P   P Y P P  P +       A AP       + A       
Sbjct: 112 QVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPA 171

Query: 228 APVEAPAPEPVEAPAQSPPEPK 249
            PV AP PEPV  PA    +PK
Sbjct: 172 EPVAAPQPEPVAEPAPVMDKPK 193

Length = 333

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 185 PPPPPYTPPPAMPPKASRKKSNASAPVAEGD--DDEFAPSDSPIEAPVEAPAPEPVEAPA 242
           P P    P  A  P  +     A AP                   +P  A AP    APA
Sbjct: 410 PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA 469

Query: 243 QSPPEPKDEAEAPAPSSASR 262
            +       A APAP +A  
Sbjct: 470 PAAAPEPTAAPAPAPPAAPA 489

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 25/125 (20%), Positives = 34/125 (27%)

Query: 138 FVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMP 197
           F  G S   + P       V       +    + P  A         P         A  
Sbjct: 363 FRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAA 422

Query: 198 PKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPKDEAEAPAP 257
           P        A A   +        + +P  AP  APA     A A   P     A APA 
Sbjct: 423 PARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPAR 482

Query: 258 SSASR 262
           ++ + 
Sbjct: 483 AAPAA 487

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 21/121 (17%)

Query: 159 SQPFNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPVA------ 212
           + P   +   V+QP  A        P P  P   P A P  A+  ++ A+AP        
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 213 ----------EGDDDEFAPSDSPIEAPVEAPAP-----EPVEAPAQSPPEPKDEAEAPAP 257
                      G     AP+ +P  AP  A  P      PV A A + P     A APAP
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491

Query: 258 S 258
           +
Sbjct: 492 A 492

Length = 700

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 172 PIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVE 231
           P++AP  GD    PP     P  A     +  K+ A+AP A   + +   +         
Sbjct: 229 PLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAA 288

Query: 232 APAPEPVEAPAQSPPEPKDE-----AEAPAPSSASRLYLASGV 269
            PAP+     A +  +P  E          P  A  L L SGV
Sbjct: 289 EPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGADDLKLISGV 331

Length = 400

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 26/109 (23%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 164 ISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSD 223
           I  L V  P   P       P P  P TP P+  PKA+   +                  
Sbjct: 356 IEALLVPVPAPQPAKPTAAAPSPVRP-TPAPSTRPKAAAAANIPPKEPVRETATPPPVPP 414

Query: 224 SPIEAPV-EAPAPEPVEAPAQSPPEPKDEAEAPAPSSASRLYLASGVAL 271
            P+  PV   P   P    A  P + K +   PAP       L +   +
Sbjct: 415 RPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463

Length = 585

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 192 PPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPKDE 251
           P PA  P   +K      P  +       P  +P   P E P+P     P Q PP  +  
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPE-APGARPAELPSPASAPTPEQQPPVARSA 440

Query: 252 AEAPAPSSASRLYLASGVA 270
              P+P +++   +ASG  
Sbjct: 441 PLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDD---EFAPSDSPIEAPVE-APAPEPVE 239
            P      P  A    A  + + A+AP    DD    E  P +    AP +   AP    
Sbjct: 463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

Query: 240 A-----PAQSPPEPKDEAEAPAPSSAS 261
           A     PA + P+   E  APAP++A 
Sbjct: 523 AESIPDPATADPDDAFETLAPAPAAAP 549

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 184  PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
            P P PP  P    P + +R    + +   E     + P+D P      A A  P  +PA 
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA- 2825

Query: 244  SPPEPKDEAEAPAPSSASRLYLASGVALAGFTA 276
              P P   +  P             + L G  A
Sbjct: 2826 -GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 187 PPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPP 246
            P     P    +++R    A+ P A G   +     +    P   P P P   PA +PP
Sbjct: 374 HPKRASLPTRKRRSARH---AATPFARGPGGDDQTRPAA-PVPASVPTPAPTPVPASAPP 429

Query: 247 EPKDEAEAPAPSS 259
            P     +  P S
Sbjct: 430 PPATPLPSAEPGS 442

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 22/74 (29%), Positives = 28/74 (37%)

Query: 187 PPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPP 246
           P     P A    A+   S  +A  A       AP+     AP   P P    A A +P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 247 EPKDEAEAPAPSSA 260
            P   A A AP++A
Sbjct: 98  APPAAAAAAAPAAA 111

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 27/119 (22%), Positives = 37/119 (31%), Gaps = 17/119 (14%)

Query: 161  PFNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFA 220
            P    V ++++P V+       LPP  P   P P  PP    +      P  +       
Sbjct: 2878 PARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

Query: 221  PSDSPIE-APVEAPAPEP----------------VEAPAQSPPEPKDEAEAPAPSSASR 262
                P+      A A EP                V  P    P+P    EAPA S+   
Sbjct: 2938 RPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPL 2996

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 28/110 (25%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 172 PIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKS---NASAPVAEGDDDEFAPSDSPIEA 228
           P  AP         PP    P P   P A+   +    A A VA         +   +  
Sbjct: 403 PAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAI 462

Query: 229 PVEAPAPEPVEAPAQSPPEPKDEAEAPAPSSASRLYLASGVALAGFTAMA 278
           PV   APEP  A A   P     A    P+    ++ A+   LA   A+ 
Sbjct: 463 PVRV-APEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAIT 511

Length = 618

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 10/78 (12%)

Query: 185 PPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQS 244
           P PP        P   +     A+ PV          + +   A    PAP P    A +
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVP-------PAAPARPAA--ARPAPAPAPPAAAA 432

Query: 245 PPEPKDEAEAPAPSSASR 262
           PP       A A S+  R
Sbjct: 433 PPAR-SADPAAAASAGDR 449

Length = 576

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
                P     A    AS   +  +A          AP+ +P  A   A  P+P  A A 
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPA------APAPAPPAAAAPAAPPKPAAAAAA 92

Query: 244 SPPEPKDEAEAPAPSSASRLYLASGVALAGFTAM 277
           +       A A A + A+         L G  A 
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 27/114 (23%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 148 PPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNA 207
           P  A    +  +Q         +    A          PP P   P A  P A+   + A
Sbjct: 384 PEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443

Query: 208 SAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPKDEAEAPAPSSAS 261
           +                   AP    APE V  P +  PEP   + APAP++A 
Sbjct: 444 AVA--------------LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483

Length = 618

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 20/65 (30%), Positives = 23/65 (35%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
           PPPPP        P         A+ P  + DD   AP   P +     P P    AP  
Sbjct: 44  PPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPP 103

Query: 244 SPPEP 248
             PEP
Sbjct: 104 PAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIE-APVEAPAPEPVEAPA 242
               PP  P P          ++  APV    +   +      E             APA
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPA 481

Query: 243 QS-PPEPKDEAEAPAPSSASRLYLASGVALA 272
              PP+   E    A + ++    A   A A
Sbjct: 482 SDAPPDAAFEPAPRAAAPSAATPAAVPDARA 512

Length = 830

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 23/82 (28%), Positives = 27/82 (32%)

Query: 184  PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
            PPPPPP   PP  P          S  V +       P    +            EAPA 
Sbjct: 2932 PPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991

Query: 244  SPPEPKDEAEAPAPSSASRLYL 265
            S P     + +   S AS L L
Sbjct: 2992 STPPLTGHSLSRVSSWASSLAL 3013

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 185 PPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQS 244
            P  P    PA  P A    + A A          A + S   AP  A  P PV APA +
Sbjct: 380 TPARPEAAAPAAAPVAQAAAAPAPAAAP-------AAAASAPAAPPAAAPPAPVAAPAAA 432

Query: 245 PPEPKDEAEAPAPSSAS 261
            P     A A AP++ +
Sbjct: 433 APAA---APAAAPAAVA 446

Length = 618

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 154 VKSVFSQP--FNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPV 211
              V  +    N+     S    A         PPPP  TPP   P   +   +    P 
Sbjct: 498 FAKVLGRSIKLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPP 557

Query: 212 AEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPKDE 251
                   AP+  P ++    P PE    P+ +     +E
Sbjct: 558 TATQASSNAPAQIPADSSPPPPIPEE-PTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 24/92 (26%), Positives = 32/92 (34%)

Query: 172 PIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVE 231
              AP     +  P      P PA+    +   + A     + DDD F   D+  +    
Sbjct: 171 LTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPP 230

Query: 232 APAPEPVEAPAQSPPEPKDEAEAPAPSSASRL 263
           A  P  V APA         A APAP +   L
Sbjct: 231 AALPPIVVAPAAPAALAAVAAAAPAPQNDEEL 262

Length = 559

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPI-EAPVEAPAPEPVEAP- 241
            P      P P +       K  A    ++G D   A +      AP  APAP    AP 
Sbjct: 635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

Query: 242 --AQSPPEPKDEAEAPAPSSASRLYLASGVA 270
             A + P P   A  PA  +          A
Sbjct: 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAA 725

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 16/80 (20%), Positives = 20/80 (25%), Gaps = 1/80 (1%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPV-EAPA 242
             P P           A+     A+             SD     P +A    P    PA
Sbjct: 625 AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPA 684

Query: 243 QSPPEPKDEAEAPAPSSASR 262
            +P  P   A A     A  
Sbjct: 685 PAPAAPAAPAGAAPAQPAPA 704

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 21/89 (23%), Positives = 26/89 (29%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
           P   P     PA         + A+AP         AP+D       E P      APAQ
Sbjct: 454 PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQ 513

Query: 244 SPPEPKDEAEAPAPSSASRLYLASGVALA 272
               P        P  A+     +   LA
Sbjct: 514 PDAAPAGWVAESIPDPATADPDDAFETLA 542

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 18/76 (23%), Positives = 26/76 (34%)

Query: 186 PPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSP 245
                   PA    ++   + A+AP         A + +P  AP  APAP P  AP    
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 246 PEPKDEAEAPAPSSAS 261
                      P +A+
Sbjct: 446 GNAPAGGAPSPPPAAA 461

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 29/103 (28%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 169 VSQPIVAPGLGDVILPP----PPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDS 224
            + P  AP   D   PP    PP   +P PA P  A       S P          P+ +
Sbjct: 482 RAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP---------DPATA 532

Query: 225 PIEAPVEAPAPEPVEAPAQSPPEPKDEAEAPAPSSASRLYLAS 267
             +   E  AP P  APA       +   AP P  AS   L  
Sbjct: 533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575

Length = 700

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 26/116 (22%), Positives = 34/116 (29%), Gaps = 21/116 (18%)

Query: 148 PPVAKFVKSVFSQPFNISVLQVSQPIVAPGLGDVILPPPPPPYTPPPAMPPKASRKKSNA 207
            P A     V   P   +  + +     P    V     PPP  P P  PP     +S  
Sbjct: 370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPES-- 427

Query: 208 SAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPKDEAEAPAPSSASRL 263
                       AP  +    PV+       E P  +PP P  E E    +    L
Sbjct: 428 ------------APKLTRAAIPVD-------EKPKYTPPAPPKEEEKALIADGDVL 464

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 190 YTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQSPPEPK 249
           Y P     P A+   + A+A  A       A       AP    A  P   P  +     
Sbjct: 36  YGPGSTAAPTAA---AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA 92

Query: 250 DEAEAPAPSSAS 261
             A A  P++A+
Sbjct: 93  AAAPAAPPAAAA 104

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 23/78 (29%), Positives = 28/78 (35%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
            P PPP TPPPA PP +     +             A S     A   A A +   +   
Sbjct: 113 SPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQA 172

Query: 244 SPPEPKDEAEAPAPSSAS 261
           + P    E  A APSS  
Sbjct: 173 ALPLSSPEETARAPSSPP 190

Length = 1352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
COG2335	187	Secreted and surface protein containing fasciclin-	99.72
PF02469	128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.56
smart00554	99	FAS1 Four repeated domains in the Fasciclin I fami	99.14
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	97.74
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	96.69

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

Probab=99.72  E-value=2.6e-17  Score=145.23  Aligned_cols=130  Identities=18%  Similarity=0.200  Sum_probs=105.1

Q ss_pred             ccCHHHHHhcCCCcHHHHHHHHhcchHHHHhcCCCeEEEeeCCccccCCCC-------C--CHHHHHHHHhhcccccccC
Q 042255           28 GFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLND-------R--PVDEIKNILSVHVILDYYD   98 (280)
Q Consensus        28 a~NIt~iL~~~p~fStF~~LL~~T~L~~~Ln~~~~iTVfAPtN~Af~aL~~-------l--~~~~l~~lL~yHVl~~y~~   98 (280)
                      ..+|.+.-.++++|++|..+|+..+|.+.|++.+.+|||||+|+||.+|+.       .  +..+++++|.|||+.+.++
T Consensus        47 ~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~  126 (187)
T COG2335          47 RADIVESAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKIT  126 (187)
T ss_pred             hhHHHHHHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCccc
Confidence            356777777899999999999999999999999999999999999999964       3  7889999999999999999


Q ss_pred             hhhhccCCCCCceeeecccCCCCCCCCceEEEEeCCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccCCCC
Q 042255           99 MNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGL  178 (280)
Q Consensus        99 ~~~L~~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP~~l  178 (280)
                      .++++...   .+.|+         ++..++|...+|+ |.|.        +++++..-.. -.|..||.||+||+||+.
T Consensus       127 ~~~l~~~~---~v~t~---------~G~~~~i~~~~~~-~~Vn--------~a~v~~~di~-a~NgvIhvID~Vl~Pp~~  184 (187)
T COG2335         127 AADLKSSG---SVKTV---------QGADLKIKVTGGG-VYVN--------DATVTIADIN-ASNGVIHVIDKVLIPPMD  184 (187)
T ss_pred             HHHhhccc---cceee---------cCceEEEEEcCCc-EEEe--------eeEEEeccEe-ccCcEEEEEeeeccCCCc
Confidence            99987522   25664         2345888776666 8875        3455544333 378999999999999986


Q ss_pred             C
Q 042255          179 G  179 (280)
Q Consensus       179 f  179 (280)
                      .
T Consensus       185 ~  185 (187)
T COG2335         185 L  185 (187)
T ss_pred             c
Confidence            4

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues

Probab=99.56  E-value=5.2e-15  Score=119.29  Aligned_cols=119  Identities=18%  Similarity=0.302  Sum_probs=84.8

Q ss_pred             CCcHHHHHHHHhcchHHHH-hcCCCeEEEeeCCccccCCCC-------CCHHHHHHHHhhcccccccChhhhccCCCCCc
Q 042255           39 PNLLAFSDLLSQTKLNEAI-NKRKTITVLAVDNSSIGGLND-------RPVDEIKNILSVHVILDYYDMNKLKKLPKTSS  110 (280)
Q Consensus        39 p~fStF~~LL~~T~L~~~L-n~~~~iTVfAPtN~Af~aL~~-------l~~~~l~~lL~yHVl~~y~~~~~L~~l~~~~~  110 (280)
                      |+||+|.++|+++|+.+.| +..+.+|||||+|+||+++..       .+.+.++++|+|||+.+.|...+|+..  ...
T Consensus         1 ~~~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~--~~~   78 (128)
T PF02469_consen    1 PDLSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNG--KQT   78 (128)
T ss_dssp             -TTHHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCH--HEE
T ss_pred             CCHHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhccc--ccc
Confidence            6899999999999999999 677999999999999988721       167889999999999999999988753  011


Q ss_pred             eeeecccCCCCCCCCceEEEEeC-CCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccC
Q 042255          111 WTTMFQSTGNANDKQGYINCTRL-PGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVA  175 (280)
Q Consensus       111 ltTL~qatG~A~~~~G~vnvT~~-~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP  175 (280)
                      +.|+.        .+..+.|+.. +++++.|..       .+++++.-. .--|..||-||+||+|
T Consensus        79 ~~t~~--------~g~~~~v~~~~~~~~~~v~~-------~a~i~~~~~-~~~nG~ih~id~vL~P  128 (128)
T PF02469_consen   79 LETLL--------NGQPLRVSSSPSNGTIYVNG-------KARIVKSDI-EASNGVIHIIDDVLIP  128 (128)
T ss_dssp             EEBSS--------TTCEEEEEEEGGTTEEEECC-------EEEESEEEE-EESSEEEEEESS-TSS
T ss_pred             ceecc--------CCCEEEEEEEecCCceEecC-------ceEEEeCCE-EeCCEEEEEECceECc
Confidence            55522        1235777764 455588754       467775432 3357888888999997

It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

Probab=99.14  E-value=9.5e-11  Score=91.11  Aligned_cols=92  Identities=21%  Similarity=0.253  Sum_probs=66.0

Q ss_pred             EEEeeCCccccCCCC-----CCHH-HHHHHHhhcccccccChhhhccCCCCCceeeecccCCCCCCCCceEEEEeCCC-C
Q 042255           64 TVLAVDNSSIGGLND-----RPVD-EIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPG-E  136 (280)
Q Consensus        64 TVfAPtN~Af~aL~~-----l~~~-~l~~lL~yHVl~~y~~~~~L~~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G-~  136 (280)
                      |||||+|+||+++..     +..+ .++++|+|||+++++...+|..   +..++||.         +..+.++..++ +
T Consensus         1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~---~~~~~Tl~---------g~~l~v~~~~~~~   68 (99)
T smart00554        1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN---GGTLPTLA---------GSKLRVTRSGDSG   68 (99)
T ss_pred             CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc---CCccccCC---------CCEEEEEEeCCCC
Confidence            899999999999743     2222 8999999999999999999864   22277763         23577777443 4


Q ss_pred             eEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccCC
Q 042255          137 QFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAP  176 (280)
Q Consensus       137 ~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP~  176 (280)
                      .+.+..        +++++.-.. -.|+.|+-||+||+|+
T Consensus        69 ~i~in~--------~~v~~~di~-~~nGvih~Id~vL~P~   99 (99)
T smart00554       69 TVTVNG--------ARIVEADIA-ATNGVVHVIDRVLLPP   99 (99)
T ss_pred             eEEEcc--------eEEEECCEe-cCCeEEEEECceeCCC
Confidence            466642        456665333 3578888899999986

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.74  E-value=0.00019  Score=74.75  Aligned_cols=133  Identities=15%  Similarity=0.120  Sum_probs=90.7

Q ss_pred             cCHHHHHhcCCCcHHHHHHHHhcchHHHHhcCCCeEEEeeCCccccCCC-C----CCHHHHHHHHhhcccccccChhhhc
Q 042255           29 FDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLN-D----RPVDEIKNILSVHVILDYYDMNKLK  103 (280)
Q Consensus        29 ~NIt~iL~~~p~fStF~~LL~~T~L~~~Ln~~~~iTVfAPtN~Af~aL~-~----l~~~~l~~lL~yHVl~~y~~~~~L~  103 (280)
                      ..+-+.|.+-+.+|.|.++|+..++-++++..+.+|+|+|+|.++.+-. +    .....+.++|.||++..-+-     
T Consensus       508 ~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~~~~~t~fvPt~ka~~~~~~~~~~~~~~~~l~~~l~yH~v~~~~~-----  582 (682)
T KOG1437|consen  508 VSLMEDLKTDGRISGTVQGLEGVLLPEELTPEGNYTLFVPTNKAWQKSTKDEKSLFHKKALQDFLKYHLVPGQSR-----  582 (682)
T ss_pred             ccHHHHHhhccchhhhHHhhhhcCChhhhccCCceEEEeecccccccCCcchhhcchHHHHHHHHHhccccceee-----
Confidence            3567788888999999999999999999999899999999999999853 2    25689999999999987432     


Q ss_pred             cCCCCCceeeecccCCCCCCCCceEEEEeCCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccCCCCC
Q 042255          104 KLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLG  179 (280)
Q Consensus       104 ~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP~~lf  179 (280)
                       +..++...+.          .+ +.++ ..|+.+.|..-.+-..++...+.-..-.-.|+.|++||.+|-|+.++
T Consensus       583 -ls~~~~~~v~----------~~-~k~s-~~~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~l~  645 (682)
T KOG1437|consen  583 -LSLGSSPYVM----------IQ-VKLS-LRGDHLFFSLVNPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPDLP  645 (682)
T ss_pred             -eeccccccee----------ee-eeEE-EecccEEeeeeccccceeeeeeeccceeeecceeEEEEEEcccCcch
Confidence             1111111111          11 2222 22332555443333334444443334455788999999999998665

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=96.69  E-value=0.0039  Score=65.15  Aligned_cols=83  Identities=16%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             ccCHHHHHhcCCCcHHHHHHHHhcchHHHHhcCCCeEEEeeCCccccCCCC-CCHHHHHHHHhhcccccccChhhhccCC
Q 042255           28 GFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLND-RPVDEIKNILSVHVILDYYDMNKLKKLP  106 (280)
Q Consensus        28 a~NIt~iL~~~p~fStF~~LL~~T~L~~~Ln~~~~iTVfAPtN~Af~aL~~-l~~~~l~~lL~yHVl~~y~~~~~L~~l~  106 (280)
                      ..|+.++..+ .+.+++.+|+.+-++...|...+.+|+|+|.|.+|+.+.- ..+...++||.||++..|....++.+  
T Consensus       373 ~~~l~~La~e-~~~st~~rlv~elgll~~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~y~--  449 (682)
T KOG1437|consen  373 LKNLMSLARE-DEISTSMRLVAELGLLTALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSMYN--  449 (682)
T ss_pred             HHHHHHHHhc-ccccHHHHHHHhccceEEEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhhhc--
Confidence            4566776544 4789999999999999888877789999999999998643 33444799999999999999887643  


Q ss_pred             CCC-ceeee
Q 042255          107 KTS-SWTTM  114 (280)
Q Consensus       107 ~~~-~ltTL  114 (280)
                       +. .++|+
T Consensus       450 -~~~~v~t~  457 (682)
T KOG1437|consen  450 -GQTTVRTL  457 (682)
T ss_pred             -ccceeecc
Confidence             32 26665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-04

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 11/79 (13%), Positives = 20/79 (25%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
                      A   K  + +  A+A          A +    EA   A   E       
Sbjct: 46  NEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVA 105

Query: 244 SPPEPKDEAEAPAPSSASR 262
             P  + + ++   + A  
Sbjct: 106 ETPSAEAKPKSDKETEAKP 124

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 14/77 (18%), Positives = 22/77 (28%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
                  +           +  +A     E  +     S++   A  EA   E  EA + 
Sbjct: 34  TELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASA 93

Query: 244 SPPEPKDEAEAPAPSSA 260
           + PE K         SA
Sbjct: 94  AKPEEKASEVVAETPSA 110

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 11/79 (13%), Positives = 16/79 (20%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
                              K   A       +    A +++      EA +    E  A 
Sbjct: 42  EHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKAS 101

Query: 244 SPPEPKDEAEAPAPSSASR 262
                   AEA   S    
Sbjct: 102 EVVAETPSAEAKPKSDKET 120

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 43.0 bits (100), Expect = 7e-05
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
                  T      P ++   +  +A  A     E   S+   E P     P+  +   +
Sbjct: 63  EKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKS-DKETE 121

Query: 244 SPPEPKDEAEAPAPSSAS 261
           + PE  ++ +   P++ +
Sbjct: 122 AKPEATNQGDESKPAAEA 139

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 13/77 (16%), Positives = 17/77 (22%), Gaps = 1/77 (1%)

Query: 184 PPPPPPYTPPPAMPPKASRKKSNASAPVAEGDDDEFAPSDSPIEAPVEAPAPEPVEAPAQ 243
                           AS   + A+            P +   E   E P+ E       
Sbjct: 59  ENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKS-D 117

Query: 244 SPPEPKDEAEAPAPSSA 260
              E K EA      S 
Sbjct: 118 KETEAKPEATNQGDESK 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.8
2vxp_A	132	Transforming growth factor-beta-induced protein IG	99.78
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	99.77
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.73
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.62

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A

Probab=99.80  E-value=2.6e-20  Score=153.76  Aligned_cols=127  Identities=13%  Similarity=0.140  Sum_probs=100.2

Q ss_pred             ccCHHHHHhcCCCcHHHHHHHHhcchHHHHhcCCCeEEEeeCCccccCCCC-----C----CHHHHHHHHhhcccccccC
Q 042255           28 GFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLND-----R----PVDEIKNILSVHVILDYYD   98 (280)
Q Consensus        28 a~NIt~iL~~~p~fStF~~LL~~T~L~~~Ln~~~~iTVfAPtN~Af~aL~~-----l----~~~~l~~lL~yHVl~~y~~   98 (280)
                      ..||.++|++.++||+|.++|+++|+.+.|++.+++|||||+|+||.+|..     +    +.++++++|+|||++++|.
T Consensus         2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~   81 (137)
T 1w7d_A            2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVM   81 (137)
T ss_dssp             CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCC
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEc
Confidence            358999999999999999999999999999999999999999999999853     2    5789999999999999999


Q ss_pred             hhhhccCCCCCceeeecccCCCCCCCCceEEEEeCCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccCCC
Q 042255           99 MNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPG  177 (280)
Q Consensus        99 ~~~L~~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP~~  177 (280)
                      ..+|..   +..++||.         +..++|+.. |+ +.|..        ++|++.-. .-.|..|+.||+||+|+.
T Consensus        82 ~~~l~~---~~~~~tl~---------G~~l~v~~~-~g-v~vn~--------a~v~~~di-~~~NGvIHvID~VL~P~s  137 (137)
T 1w7d_A           82 SSDLTE---GMTAETVE---------GGALTVTLE-GG-PKVNG--------VSISQPDV-DASNGVIHVIDGVLMPGA  137 (137)
T ss_dssp             TTTSCS---SEEEECTT---------SCEEEEECT-TS-CEETT--------EECSBCCC-BCSSSEEEBCSSCCSSCC
T ss_pred             HHHhcC---CCeeeccC---------CceEEEEec-CC-EEEeC--------cEEEECCe-ecCCeEEEEECeeeCCCC
Confidence            888754   22266652         235778765 44 77742        55555421 235777888899999973

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A

Probab=99.78  E-value=6.9e-19  Score=144.40  Aligned_cols=124  Identities=13%  Similarity=0.137  Sum_probs=96.4

Q ss_pred             cCHHHHHhcCCCcHHHHHHHHhcchHHHHhcCCCeEEEeeCCccccCCCC-------CCHHHHHHHHhhcccccccChhh
Q 042255           29 FDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLND-------RPVDEIKNILSVHVILDYYDMNK  101 (280)
Q Consensus        29 ~NIt~iL~~~p~fStF~~LL~~T~L~~~Ln~~~~iTVfAPtN~Af~aL~~-------l~~~~l~~lL~yHVl~~y~~~~~  101 (280)
                      .||.++|++.++||+|.++|+++|+.+.|++.+++|||||+|+||++|..       .+.++++++|+|||+++.+...+
T Consensus         2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~   81 (132)
T 2vxp_A            2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGG   81 (132)
T ss_dssp             CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTT
T ss_pred             ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhh
Confidence            37999999999999999999999999999999999999999999999853       27889999999999999887777


Q ss_pred             hccCCCCCceeeecccCCCCCCCCceEEEEeCCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCcccc
Q 042255          102 LKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIV  174 (280)
Q Consensus       102 L~~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLl  174 (280)
                      |..   +..++||.         +..+.|+..+|+ +.+..        ++|++.-.. -.|..|+-||+||+
T Consensus        82 l~~---~~~~~tl~---------G~~l~v~~~~~~-v~vn~--------a~v~~~di~-a~NGvIHvID~VLl  132 (132)
T 2vxp_A           82 IGA---LVRLKSLQ---------GDKLEVSLKNNV-VSVNK--------EPVAEPDIM-ATNGVVHVITNVLQ  132 (132)
T ss_dssp             CSS---CEEEEBTT---------SSEEEEEEETTE-EEESS--------CBEEEEEEE-ETTEEEEEESSCC-
T ss_pred             ccC---CceEecCC---------CCEEEEEEeCCE-EEEec--------cEEEEccee-cCCEEEEEECcEeC
Confidence            642   22267752         235788765554 88742        345553222 35788888899985

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1

Probab=99.77  E-value=2.1e-19  Score=153.17  Aligned_cols=125  Identities=22%  Similarity=0.283  Sum_probs=100.8

Q ss_pred             ccCHHHHHhcCCCcHHHHHHHH-----hcchHHHHhcCCCeEEEeeCCccccCCCC-------CCHHHHHHHHhhccccc
Q 042255           28 GFDIIKILSNHPNLLAFSDLLS-----QTKLNEAINKRKTITVLAVDNSSIGGLND-------RPVDEIKNILSVHVILD   95 (280)
Q Consensus        28 a~NIt~iL~~~p~fStF~~LL~-----~T~L~~~Ln~~~~iTVfAPtN~Af~aL~~-------l~~~~l~~lL~yHVl~~   95 (280)
                      ..||.++|+++++||+|.++|+     ++||.++|++.+ +|||||+|+||.+|..       .+.+++++||+|||+++
T Consensus        27 ~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~g  105 (163)
T 1nyo_A           27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAG  105 (163)
T ss_dssp             HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEES
T ss_pred             CcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceECC
Confidence            4589999999999999999999     999999999988 9999999999999852       15678999999999999


Q ss_pred             ccChhhhccCCCCCceeeecccCCCCCCCCceEEEEeCCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccC
Q 042255           96 YYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVA  175 (280)
Q Consensus        96 y~~~~~L~~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP  175 (280)
                      +|...+|.     +.++||.   |      ..++|+..+|+ |.|..        ++|++.-. .-.|..|+.||+||+|
T Consensus       106 ~~~~~~l~-----g~~~Tl~---G------~~l~v~~~~~~-v~vn~--------a~V~~~di-~a~NGvIHvID~VL~P  161 (163)
T 1nyo_A          106 QTSPANVV-----GTRQTLQ---G------ASVTVTGQGNS-LKVGN--------ADVVCGGV-STANATVYMIDSVLMP  161 (163)
T ss_dssp             CCCTTTSC-----EEEECTT---S------SEEEEEECSSC-EEETT--------EECSSBCC-CCSSEEEBCBSSCCCC
T ss_pred             EEcHHHhC-----CccccCC---C------CEEEEEEECCE-EEEec--------cEEEECce-EcCCEEEEEECcEeCC
Confidence            99998875     2377752   2      36888876555 88742        55665422 2368888888999999


Q ss_pred             CC
Q 042255          176 PG  177 (280)
Q Consensus       176 ~~  177 (280)
                      +.
T Consensus       162 ~~  163 (163)
T 1nyo_A          162 PA  163 (163)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.73  E-value=5.5e-18  Score=156.98  Aligned_cols=140  Identities=18%  Similarity=0.247  Sum_probs=97.1

Q ss_pred             CCccCHHHHHh------cCCCcHHHHHHHHhcc--hHHHHhcCCCeEEEeeCCccccCCC--C--CCHHHHHHHHhhccc
Q 042255           26 VNGFDIIKILS------NHPNLLAFSDLLSQTK--LNEAINKRKTITVLAVDNSSIGGLN--D--RPVDEIKNILSVHVI   93 (280)
Q Consensus        26 a~a~NIt~iL~------~~p~fStF~~LL~~T~--L~~~Ln~~~~iTVfAPtN~Af~aL~--~--l~~~~l~~lL~yHVl   93 (280)
                      +...||+++|+      ++++||+|.++|+++|  |.++|++++++|||||+|+||.++.  .  .+.+.++++|+|||+
T Consensus         3 ~~~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv   82 (324)
T 1o70_A            3 AADTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHII   82 (324)
T ss_dssp             ----------------CCHHHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEE
T ss_pred             eehhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcCCCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEe
Confidence            45679999998      6789999999999999  9999999999999999999998763  2  378999999999999


Q ss_pred             ccccChhhhccCCCC-C-ceeeecccCCCCCCCCceEEEEeC-CCCeEEEeCCCCCCCCceEEeeeeeecc-cceEEEEe
Q 042255           94 LDYYDMNKLKKLPKT-S-SWTTMFQSTGNANDKQGYINCTRL-PGEQFVFGSSVKNSPPVAKFVKSVFSQP-FNISVLQV  169 (280)
Q Consensus        94 ~~y~~~~~L~~l~~~-~-~ltTL~qatG~A~~~~G~vnvT~~-~G~~V~~~S~~~gs~~~atvvksv~~~P-~~lsV~qV  169 (280)
                      +++|...+|+...++ . .++||.+..      ..+++++.. ++..|.+..+    ..+++|++.  +.+ .|..|+.|
T Consensus        83 ~g~~~~~~l~~~~~~~~~~~~Tl~g~~------~l~~~v~~~~~~~~v~v~~g----~~~a~v~~~--di~~~NGvIhvI  150 (324)
T 1o70_A           83 KDRLNVDKIRQKNANLIAQVPTVNNNT------FLYFNVRGEGSDTVITVEGG----GVNATVIQA--DVAQTNGYVHII  150 (324)
T ss_dssp             SSCCCHHHHHHHTSSSCCCEEBSSTTC------EEEEEEESCGGGCEEEEEET----TEEEEEEEE--EEECSSEEEEEE
T ss_pred             CCeecHHHHhhccCCCceEEEcCCCCc------eEEEEEeecCCceEEEEcCC----ceeEEEEec--cccccCcEEEEE
Confidence            999999999876532 2 278875321      124565532 2334776543    246888875  333 46667778


Q ss_pred             CccccCCC
Q 042255          170 SQPIVAPG  177 (280)
Q Consensus       170 d~vLlP~~  177 (280)
                      |+||+|+.
T Consensus       151 D~VL~pp~  158 (324)
T 1o70_A          151 DHVLGVPY  158 (324)
T ss_dssp             SSCTTSCC
T ss_pred             chhhhhch
Confidence            99999864

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.62  E-value=2.2e-16  Score=146.26  Aligned_cols=136  Identities=13%  Similarity=0.114  Sum_probs=103.5

Q ss_pred             cCHHHHHhcCCCcHHHHHHHHhcchHHHHh-cCCCeEEEeeCCccccCCC---------CCC---HHHHHHHHhhccccc
Q 042255           29 FDIIKILSNHPNLLAFSDLLSQTKLNEAIN-KRKTITVLAVDNSSIGGLN---------DRP---VDEIKNILSVHVILD   95 (280)
Q Consensus        29 ~NIt~iL~~~p~fStF~~LL~~T~L~~~Ln-~~~~iTVfAPtN~Af~aL~---------~l~---~~~l~~lL~yHVl~~   95 (280)
                      .+|.++|++.++|++|.++|+.+|+.++|+ ..+++|||||+|+||.++.         .+.   .++++++|+|||+++
T Consensus       159 ~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~yHvv~~  238 (324)
T 1o70_A          159 TTVLGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAIS  238 (324)
T ss_dssp             SCHHHHHHHCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEE
T ss_pred             hhHHHHhhcCchHHHHHHHHHhhCHHHHhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHhcEeCC
Confidence            479999999999999999999999999998 4789999999999999872         122   259999999999998


Q ss_pred             --ccChhhhccCCCC--Cc-eeeecccCCCCCCCCceEEEEe-CCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEe
Q 042255           96 --YYDMNKLKKLPKT--SS-WTTMFQSTGNANDKQGYINCTR-LPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQV  169 (280)
Q Consensus        96 --y~~~~~L~~l~~~--~~-ltTL~qatG~A~~~~G~vnvT~-~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qV  169 (280)
                        +|+..+|.+..+.  .. ++||.          +.+.|+. ..|+.+.+..+.    ..++|++.-.. -.|..||.|
T Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~Tl~----------~~l~v~~~~~~~~v~v~~~~----~~a~v~~~di~-~~NGvIHvI  303 (324)
T 1o70_A          239 DKEYTMKDLVKFSQESGSVILPTFR----------DSLSIRVEEEAGRYVIIWNY----KKINVYRPDVE-CTNGIIHVI  303 (324)
T ss_dssp             SSCCCHHHHHHHHHHSSSEEEECSS----------SEEEEEEEEETTEEEEEETT----EEEEEEEEEEE-ETTEEEEEE
T ss_pred             cceEcHHHHhhhccCCCeeeeeccC----------CcEEEEEEecCCEEEEEecC----ceeEEEEcccc-cCCCeEEEe
Confidence              9998988764321  12 66641          3566665 245558887532    24667664222 257889999


Q ss_pred             CccccCCCCC
Q 042255          170 SQPIVAPGLG  179 (280)
Q Consensus       170 d~vLlP~~lf  179 (280)
                      |+||+|++..
T Consensus       304 D~VL~P~~~~  313 (324)
T 1o70_A          304 DYPLLEEKDV  313 (324)
T ss_dssp             SSCSCCTTTT
T ss_pred             ceeecCCccc
Confidence            9999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d1nyoa_	163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.66
d1o70a1	140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.61
d1o70a2	157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.5

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=3e-17  Score=138.67  Aligned_cols=124  Identities=21%  Similarity=0.260  Sum_probs=96.0

Q ss_pred             cCHHHHHhcCCCcHHHHHHHH-----hcchHHHHhcCCCeEEEeeCCccccCCCC-------CCHHHHHHHHhhcccccc
Q 042255           29 FDIIKILSNHPNLLAFSDLLS-----QTKLNEAINKRKTITVLAVDNSSIGGLND-------RPVDEIKNILSVHVILDY   96 (280)
Q Consensus        29 ~NIt~iL~~~p~fStF~~LL~-----~T~L~~~Ln~~~~iTVfAPtN~Af~aL~~-------l~~~~l~~lL~yHVl~~y   96 (280)
                      .+|.++++.+|+||+|..+|+     ++||.+.|++ +.+|||||+|+||.+|..       .+.+++++||+|||+.++
T Consensus        28 ~~v~~~a~~~p~lstl~~Al~a~~~~~a~L~~~L~~-gpfTvFAPtn~AF~~l~~~~~~~l~~~~~~L~~iL~yHVv~g~  106 (163)
T d1nyoa_          28 DPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNS-GQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQ  106 (163)
T ss_dssp             SCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTS-SSEEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESC
T ss_pred             chHHHHHhcCCchHHHHHHHhhccccccchhHhhcC-CCeEEEEECcHHHHhcCHHHHHhhhhhHHHHHHhhhhhhhhhh
Confidence            579999999999999999998     4799999996 889999999999999852       356789999999999999


Q ss_pred             cChhhhccCCCCCceeeecccCCCCCCCCceEEEEeCCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccCC
Q 042255           97 YDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAP  176 (280)
Q Consensus        97 ~~~~~L~~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP~  176 (280)
                      +...+|..     .++||-         ++.+.|+..+|. +.+..        ++|++.=. .-.|.-|+-||+||+||
T Consensus       107 ~~~~~l~~-----~~~Tl~---------G~~l~v~~~~~~-i~v~~--------a~Vv~~di-~a~NGvIHvID~VLlPP  162 (163)
T d1nyoa_         107 TSPANVVG-----TRQTLQ---------GASVTVTGQGNS-LKVGN--------ADVVCGGV-STANATVYMIDSVLMPP  162 (163)
T ss_dssp             CCTTTSCE-----EEECTT---------SSEEEEEECSSC-EEETT--------EECSSBCC-CCSSEEEBCBSSCCCCC
T ss_pred             hhhhhhhh-----hhhhcc---------CcceeEEecCCE-EEEec--------eEEEECCe-ecCCcEEEEECccccCC
Confidence            98887632     156641         245888876665 88742        55555411 12467777779999998


Q ss_pred             C
Q 042255          177 G  177 (280)
Q Consensus       177 ~  177 (280)
                      .
T Consensus       163 a  163 (163)
T d1nyoa_         163 A  163 (163)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=4.4e-16  Score=124.93  Aligned_cols=129  Identities=18%  Similarity=0.232  Sum_probs=90.1

Q ss_pred             cCCCcHHHHHHHHhcc--hHHHHhcCCCeEEEeeCCccccCCCC----CCHHHHHHHHhhcccccccChhhhccCCCCC-
Q 042255           37 NHPNLLAFSDLLSQTK--LNEAINKRKTITVLAVDNSSIGGLND----RPVDEIKNILSVHVILDYYDMNKLKKLPKTS-  109 (280)
Q Consensus        37 ~~p~fStF~~LL~~T~--L~~~Ln~~~~iTVfAPtN~Af~aL~~----l~~~~l~~lL~yHVl~~y~~~~~L~~l~~~~-  109 (280)
                      +.+.|++|.++|+++|  +.++|++.+++|||||+|+||.++..    .+.++++++|+|||++++|...+|....... 
T Consensus         2 ~~~~~~~f~~~i~~~g~~~~~~l~~~~~~TvFAPtn~Af~~~~~~~~~~~~~~l~~~l~yHiv~~~~~~~~l~~~~~~~~   81 (140)
T d1o70a1           2 ENGALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLI   81 (140)
T ss_dssp             CHHHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSCCCHHHHHHHTSSSC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECHHHHhcCChhhhcCCHHHHHHHHHhhccCCeEEHHHHhcCcccCc
Confidence            4567999999999986  88999999999999999999998753    4789999999999999999999987643322 


Q ss_pred             c-eeeecccCCCCCCCCceEEEEeCC-CCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccCC
Q 042255          110 S-WTTMFQSTGNANDKQGYINCTRLP-GEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAP  176 (280)
Q Consensus       110 ~-ltTL~qatG~A~~~~G~vnvT~~~-G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP~  176 (280)
                      . +.|+.   |   +.....+++... +..+.+..+    ..+++|++.-. .-.|.-|+.||+||.||
T Consensus        82 ~~~~t~~---g---~~~~~~~~~~~~~~~~~~~~~~----~~~a~V~~~Di-~~~NGvIH~ID~VL~~P  139 (140)
T d1o70a1          82 AQVPTVN---N---NTFLYFNVRGEGSDTVITVEGG----GVNATVIQADV-AQTNGYVHIIDHVLGVP  139 (140)
T ss_dssp             CCEEBSS---T---TCEEEEEEESCGGGCEEEEEET----TEEEEEEEEEE-ECSSEEEEEESSCTTSC
T ss_pred             eEeeecC---C---CceEEEEEeccceeEEEEecCC----cceEEEEeCCE-ecCCeEEEEECCccCCc
Confidence            1 44432   1   011223344322 222333322    13577776532 23577788889999987

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=5.5e-15  Score=120.95  Aligned_cols=132  Identities=14%  Similarity=0.172  Sum_probs=88.1

Q ss_pred             CHHHHHhcCCCcHHHHHHHHhcchHHHHhcC-CCeEEEeeCCccccCCC------------CCCHHHHHHHHhhcccccc
Q 042255           30 DIIKILSNHPNLLAFSDLLSQTKLNEAINKR-KTITVLAVDNSSIGGLN------------DRPVDEIKNILSVHVILDY   96 (280)
Q Consensus        30 NIt~iL~~~p~fStF~~LL~~T~L~~~Ln~~-~~iTVfAPtN~Af~aL~------------~l~~~~l~~lL~yHVl~~y   96 (280)
                      .|.++|+..|+|+.|.++++.+|+.++|+.. +.+|||||+|+||.++.            ..+.+.+++||+|||+++.
T Consensus         2 Ti~~~l~~~p~ls~~~~~~~~s~l~~~L~~~~~~~TvFaPtn~Af~~l~~~~~~~~~~~~~~~~~~~l~~il~~Hiv~g~   81 (157)
T d1o70a2           2 TVLGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISD   81 (157)
T ss_dssp             CHHHHHHHCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEES
T ss_pred             cHHHHHHhCccHHHHHHHHHhCCHHHHHhCCCCceEEEecCHHHHHHhhhhccchhhhhcCcccHHHHHHHheeEEeccc
Confidence            4789999999999999999999999999875 57999999999999862            1246789999999999863


Q ss_pred             --cChhhhccCC--CCCc-eeeecccCCCCCCCCceE--EEEeCCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEe
Q 042255           97 --YDMNKLKKLP--KTSS-WTTMFQSTGNANDKQGYI--NCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQV  169 (280)
Q Consensus        97 --~~~~~L~~l~--~~~~-ltTL~qatG~A~~~~G~v--nvT~~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qV  169 (280)
                        +....+....  .+.. ..|    .      .|..  ++...+|. +.+....    -.++|++.=.. -.|.-|+-|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~-~~~~~~~----~~a~V~~~Di~-a~NGviHvI  145 (157)
T d1o70a2          82 KEYTMKDLVKFSQESGSVILPT----F------RDSLSIRVEEEAGR-YVIIWNY----KKINVYRPDVE-CTNGIIHVI  145 (157)
T ss_dssp             SCCCHHHHHHHHHHSSSEEEEC----S------SSEEEEEEEEETTE-EEEEETT----EEEEEEEEEEE-ETTEEEEEE
T ss_pred             ccchhhhhhhhhccCCceeEEe----c------CCcEEEEEEcCCcE-EEEecCC----ccceEEECCEe-cCCeEEEEE
Confidence              3333322211  1111 121    1      2333  33434443 4443321    25777764222 257777777


Q ss_pred             CccccCCC
Q 042255          170 SQPIVAPG  177 (280)
Q Consensus       170 d~vLlP~~  177 (280)
                      |+||+|++
T Consensus       146 D~VLlp~~  153 (157)
T d1o70a2         146 DYPLLEEK  153 (157)
T ss_dssp             SSCSCCTT
T ss_pred             CceecCCC
Confidence            99999964