Citrus Sinensis ID: 042256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
RRRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDELVEDGMGPRLMSHHKSKDLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALDKMPKCTIHFLKW
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEcccccEEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEccccEEEEEEcccEEEEEEEEcccEEEEcccccccEEccccEEEEEEEEEEccccccccHHHHHccccccEEEEEEEEEEEEEEEEEEEEEccEEEEEEEccEEEcccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEccccccccccccEEEEEEEEEccccEEEEEEccEEEEEEEcccccEEcccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEEEEEEEEEEEcccEEEEEccccccEEEEEEEc
Coil and Loop (DISEMBL)
rrrksccrvccccfcFFIVLLIILIVIAGALfylwfdpklpvfhlqsfsfrhfnvsvksdgtylHAATLTRVearnpngklryyyrhtdvevtagkdkeidlgtgsvpgftqgtkNARSLKietktdelvedgmgprlmshhkskdLVVNVVVKTTVAVIVQgrktrplavkvtcggqslkaldkmpkctihflkw
Flexible Loop (DISEMBL)
rrrksccrvcCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAAtltrvearnpngklryyyRHTDvevtagkdkeidlgtgsvpgftqgtknarslkietktdELVEDGMgprlmshhkskdlvvNVVVKTTVAVivqgrktrplavkvtcggqslkaldkmpkctihflkw
Low Complexity Region (SEG)
RRRKSccrvccccfcffivlliiliviAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDELVEDGMGPRLMSHHKSKDLvvnvvvkttvavivQGRKTRPLAVKVTCGGQSLKALDKMPKCTIHFLKW
Disordered region (IsUnstruct)
*****CCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDL******************************************KDLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALDKMPKCTIHFL**
Disordered Region (DISOPRED)
*****CC*VCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDELVE************SKDLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLK****MPKCTIHFLKW
Disordered Region (DISEMBL)
RRRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDELVEDGMGPRLMSHHKSKDLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALDKMPKCTIHFLKW
Disordered Region (DISPRO)
****SCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDELVEDGMGPRLMSHHKSKDLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALDKMPKCTIHFLKW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RRRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDELVEDGMGPRLMSHHKSKDLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALDKMPKCTIHFLKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
255541786	243	conserved hypothetical protein [Ricinus	1.0	0.806	0.512	1e-50
224064161	240	predicted protein [Populus trichocarpa]	0.852	0.695	0.523	1e-43
449432086	246	PREDICTED: uncharacterized protein LOC10	0.923	0.735	0.456	1e-42
224127846	242	predicted protein [Populus trichocarpa]	0.994	0.805	0.472	7e-39
297824699	252	hypothetical protein ARALYDRAFT_483780 [	0.852	0.662	0.494	1e-36
116831168	253	unknown [Arabidopsis thaliana]	0.852	0.660	0.476	3e-35
30690312	252	late embryogenesis abundant hydroxyproli	0.852	0.662	0.476	3e-35
3702319	254	hypothetical protein [Arabidopsis thalia	0.852	0.657	0.476	3e-35
26449684	252	unknown protein [Arabidopsis thaliana]	0.852	0.662	0.470	1e-34
225454438	246	PREDICTED: uncharacterized protein LOC10	0.862	0.686	0.456	8e-30

>gi|255541786|ref|XP_002511957.1| conserved hypothetical protein [Ricinus communis] gi|223549137|gb|EEF50626.1| conserved hypothetical protein [Ricinus communis]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/199 (51%), Positives = 131/199 (65%), Gaps = 3/199 (1%)

Query: 1   RRRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSD 60
           +RRK+   +CC         +++++ I G +FYLWFDPKLPVFHLQSF    F V+ K D
Sbjct: 45  KRRKNYGGMCCRILVIISFTVLLILFILGGVFYLWFDPKLPVFHLQSFKISSFRVTTKPD 104

Query: 61  GTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSL 120
           GTYL+AAT+ RVE RNPN KL Y Y  + V++T G+D+   LG+ S+PGF Q  KN  S 
Sbjct: 105 GTYLNAATVARVEVRNPNSKLTYRYSESQVQMTLGQDQGTQLGSMSLPGFLQDKKNTTSF 164

Query: 121 KIETKT-DELVEDGMGPRLMSHHKSKDLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQS 179
           KI+    +EL+EDG+G RL S  KS+ LVVNV V T V V VQG +   L V V+C G +
Sbjct: 165 KIQMSVKNELIEDGVGSRLKSQFKSRKLVVNVQVTTKVGVDVQGLEIGMLGVDVSCDGIT 224

Query: 180 LKAL--DKMPKCTIHFLKW 196
           LK +  D MPKC+IH LKW
Sbjct: 225 LKQIDGDDMPKCSIHTLKW 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064161|ref|XP_002301395.1| predicted protein [Populus trichocarpa] gi|222843121|gb|EEE80668.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 120/170 (70%), Gaps = 3/170 (1%)

Query: 29  GALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHT 88
           G LFYLWFDPKLPVFHLQSF F  FN++ +SDGTYL A  + R+E RNPN  + Y++  +
Sbjct: 72  GGLFYLWFDPKLPVFHLQSFKFSAFNITKRSDGTYLTAKMVARIEVRNPNENIIYHFGES 131

Query: 89  DVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETK-TDELVEDGMGPRLMSHHKSKDL 147
            VE TAG D E++LG+ ++P FTQG KN  SL+IET   +EL+EDG+G +++    SK L
Sbjct: 132 KVETTAG-DDEVNLGSTTLPEFTQGKKNTTSLEIETSVNNELIEDGIGSKILDQFTSKKL 190

Query: 148 VVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALD-KMPKCTIHFLKW 196
            V++ VKT++ + V+G KT  L V+V CGG +LK    +MP+C I  LKW
Sbjct: 191 KVDMDVKTSIGIGVEGVKTGLLGVEVVCGGVTLKETSTEMPRCIISTLKW 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432086|ref|XP_004133831.1| PREDICTED: uncharacterized protein LOC101214208 [Cucumis sativus] gi|449478172|ref|XP_004155241.1| PREDICTED: uncharacterized LOC101214208 [Cucumis sativus]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 123/184 (66%), Gaps = 3/184 (1%)

Query: 16  FFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEAR 75
             +++LI+ I+  G + YLWF+PKLPV HLQSF    FNV+ KSDG+YL+A T+ R+E +
Sbjct: 61  LLVLILIVAILAVGGVLYLWFEPKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEIK 120

Query: 76  NPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETK-TDELVEDGM 134
           NPN KL   Y   +V++ AG+    +LG+  VP F Q  +N  SLKIET  ++E V+DG 
Sbjct: 121 NPNSKLSLNYGDIEVQIAAGEGTRTELGSMIVPSFIQSEENTTSLKIETMVSNETVDDGA 180

Query: 135 GPRLMSHHKSKDLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALDK--MPKCTIH 192
           G  L S +++ +LVVNV  +T +  +V GR+  P+ ++V+CG  SLK LD+  +PKC+IH
Sbjct: 181 GRNLNSGNRTGELVVNVEARTKIGFVVDGRRMPPVKIEVSCGSVSLKRLDRGNVPKCSIH 240

Query: 193 FLKW 196
             +W
Sbjct: 241 LRRW 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127846|ref|XP_002320178.1| predicted protein [Populus trichocarpa] gi|222860951|gb|EEE98493.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 134/199 (67%), Gaps = 4/199 (2%)

Query: 1   RRRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSD 60
           RR +  CR+C CC    ++++I+L++I+G LFY+WF+PKLPVFHLQSF F  F+V+ KSD
Sbjct: 45  RRSRHWCRLCLCCLILLLIIVILLLIISGGLFYIWFEPKLPVFHLQSFKFPTFSVTKKSD 104

Query: 61  GTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSL 120
           GTYL A  + R+E RNPN K+ Y++  + VE T G D+E++LG+ S+P FTQ   NA SL
Sbjct: 105 GTYLKAKMVARIEVRNPNEKIIYHFGESKVETTTG-DEEVNLGSTSLPKFTQEKGNATSL 163

Query: 121 KIETK-TDELVEDGMGPRLMSHHKSKDLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQS 179
           K  T   +EL+ED +G +++    SK L V + VKT V + V G KT  L  +V CGG +
Sbjct: 164 KTVTNVNNELIEDRIGSKILHQFTSKKLKVKMNVKTRVGIGVAGMKTGLLGAEVLCGGVT 223

Query: 180 LKALD--KMPKCTIHFLKW 196
           LK  +  +MP+C +  L+W
Sbjct: 224 LKETESGEMPRCVMKILQW 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824699|ref|XP_002880232.1| hypothetical protein ARALYDRAFT_483780 [Arabidopsis lyrata subsp. lyrata] gi|297326071|gb|EFH56491.1| hypothetical protein ARALYDRAFT_483780 [Arabidopsis lyrata subsp. lyrata]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 30  ALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTD 89
           A+FYLWFDPKLP F L SF    F ++   DG  L A  + RVE +NPN KL +YY +T 
Sbjct: 79  AVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVARVEMKNPNSKLVFYYGNTA 138

Query: 90  VEVTAGK-DKEIDLGTGSVPGFTQGTKNARSLKIETKT-DELVEDGMGPRLMSHHKSKDL 147
           VE++ G  + E  +G  +V GF QG KN+ S+K+ET   +ELVE G+  RL +  +SKDL
Sbjct: 139 VEMSVGSGNDETGMGETTVNGFRQGPKNSTSVKVETTVKNELVERGLAKRLAAKFQSKDL 198

Query: 148 VVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALD-KMPKCTIHFLKW 196
           V+NVV KT V + V G K   LAV + CGG SL  LD   P+CT++ LKW
Sbjct: 199 VINVVAKTKVGLGVGGIKIGMLAVNLRCGGVSLNKLDTDSPQCTLNTLKW 248

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831168|gb|ABK28538.1| unknown [Arabidopsis thaliana]

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 30  ALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTD 89
           A+FYLWFDPKLP F L SF    F ++   DG  L A  + RVE +NPN KL +YY +T 
Sbjct: 79  AVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVARVEMKNPNSKLVFYYGNTA 138

Query: 90  VEVTAGK-DKEIDLGTGSVPGFTQGTKNARSLKIETKT-DELVEDGMGPRLMSHHKSKDL 147
           V+++ G  + E  +G  ++ GF QG KN+ S+K+ET   ++LVE G+  RL +  +SKDL
Sbjct: 139 VDLSVGSGNDETGMGETTMNGFRQGPKNSTSVKVETTVKNQLVERGLAKRLAAKFQSKDL 198

Query: 148 VVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALD-KMPKCTIHFLKW 196
           V+NVV KT V + V G K   LAV + CGG SL  LD   PKC ++ LKW
Sbjct: 199 VINVVAKTKVGLGVGGIKIGMLAVNLRCGGVSLNKLDTDSPKCILNTLKW 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690312|ref|NP_182153.2| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|91806363|gb|ABE65909.1| unknown [Arabidopsis thaliana] gi|330255579|gb|AEC10673.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 30  ALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTD 89
           A+FYLWFDPKLP F L SF    F ++   DG  L A  + RVE +NPN KL +YY +T 
Sbjct: 79  AVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVARVEMKNPNSKLVFYYGNTA 138

Query: 90  VEVTAGK-DKEIDLGTGSVPGFTQGTKNARSLKIETKT-DELVEDGMGPRLMSHHKSKDL 147
           V+++ G  + E  +G  ++ GF QG KN+ S+K+ET   ++LVE G+  RL +  +SKDL
Sbjct: 139 VDLSVGSGNDETGMGETTMNGFRQGPKNSTSVKVETTVKNQLVERGLAKRLAAKFQSKDL 198

Query: 148 VVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALD-KMPKCTIHFLKW 196
           V+NVV KT V + V G K   LAV + CGG SL  LD   PKC ++ LKW
Sbjct: 199 VINVVAKTKVGLGVGGIKIGMLAVNLRCGGVSLNKLDTDSPKCILNTLKW 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3702319|gb|AAC62876.1| hypothetical protein [Arabidopsis thaliana] gi|227204111|dbj|BAH56908.1| AT2G46300 [Arabidopsis thaliana]

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 30  ALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTD 89
           A+FYLWFDPKLP F L SF    F ++   DG  L A  + RVE +NPN KL +YY +T 
Sbjct: 79  AVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVARVEMKNPNSKLVFYYGNTA 138

Query: 90  VEVTAGK-DKEIDLGTGSVPGFTQGTKNARSLKIETKT-DELVEDGMGPRLMSHHKSKDL 147
           V+++ G  + E  +G  ++ GF QG KN+ S+K+ET   ++LVE G+  RL +  +SKDL
Sbjct: 139 VDLSVGSGNDETGMGETTMNGFRQGPKNSTSVKVETTVKNQLVERGLAKRLAAKFQSKDL 198

Query: 148 VVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALD-KMPKCTIHFLKW 196
           V+NVV KT V + V G K   LAV + CGG SL  LD   PKC ++ LKW
Sbjct: 199 VINVVAKTKVGLGVGGIKIGMLAVNLRCGGVSLNKLDTDSPKCILNTLKW 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26449684|dbj|BAC41966.1| unknown protein [Arabidopsis thaliana]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 30  ALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTD 89
           A+FYLWFDPKLP F L SF    F ++   DG  L A  + RVE +NPN KL +YY +T 
Sbjct: 79  AVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVARVEMKNPNSKLVFYYGNTA 138

Query: 90  VEVTAGK-DKEIDLGTGSVPGFTQGTKNARSLKIETKT-DELVEDGMGPRLMSHHKSKDL 147
           V+++ G  + E  +G  ++ GF QG KN+ S+K+ET   ++LVE G+  RL +  +SKDL
Sbjct: 139 VDLSVGSGNDETGMGETTMNGFRQGPKNSTSVKVETTVKNQLVERGLAKRLAAKFQSKDL 198

Query: 148 VVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALD-KMPKCTIHFLKW 196
           V+NVV KT V + V G K   L V + CGG SL  LD   PKC ++ LKW
Sbjct: 199 VINVVAKTKVGLGVGGIKIGMLTVNLRCGGVSLNKLDTDSPKCILNTLKW 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454438|ref|XP_002280320.1| PREDICTED: uncharacterized protein LOC100260268 [Vitis vinifera]

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 115/173 (66%), Gaps = 4/173 (2%)

Query: 28  AGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRH 87
            GA FYLWF+PK+PVFHLQS   + FNV+VKSD TY+ + T  +VE RNPN K+ + Y  
Sbjct: 70  GGAFFYLWFNPKVPVFHLQSLKIQRFNVTVKSDATYIDSQTAVKVEVRNPNDKITFRYGK 129

Query: 88  TDVEVTAG-KDKEIDLGTGSVPGFTQGTKNARSLKIET-KTDELVEDGMGPRLMSHHKSK 145
           T V +TAG  + E +LG+GS   FTQG K+   +K    + + LV D +G +L + ++S+
Sbjct: 130 TSVTLTAGLGEDETELGSGSSGEFTQGKKSTTVVKWTVHEKNVLVADEVGAKLKARYRSR 189

Query: 146 DLVVNVVVKTTVAVIVQGRKTRPLAVKVTCGGQSLKALD--KMPKCTIHFLKW 196
            +VV+VVV+T V++ V G +   + + ++CG  +LK LD   MPKCT++ LKW
Sbjct: 190 AMVVSVVVRTRVSLGVGGWRIGTVGMHISCGDVALKKLDGGDMPKCTVNVLKW 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2062974	252	AT2G46300 "AT2G46300" [Arabido	0.852	0.662	0.429	3e-30
TAIR|locus:4515102487	289	AT1G01453 "AT1G01453" [Arabido	0.862	0.584	0.4	5.3e-24
TAIR|locus:2125093	261	AT4G01110 "AT4G01110" [Arabido	0.846	0.636	0.390	6.8e-24
TAIR|locus:2007968	264	AT1G17620 "AT1G17620" [Arabido	0.744	0.553	0.282	5.2e-09
TAIR|locus:2018531	252	AT1G65690 "AT1G65690" [Arabido	0.448	0.349	0.322	7.8e-05
TAIR|locus:2059274	260	AT2G27080 "AT2G27080" [Arabido	0.714	0.538	0.236	0.00012
TAIR|locus:2020163	239	AT1G54540 "AT1G54540" [Arabido	0.459	0.376	0.336	0.0002
TAIR|locus:2143064	287	EMB3135 "AT5G11890" [Arabidops	0.75	0.512	0.248	0.0004

TAIR|locus:2062974 AT2G46300 "AT2G46300" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 73/170 (42%), Positives = 98/170 (57%)

Query:    30 ALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTD 89
             A+FYLWFDPKLP F L SF    F ++   DG  L A  + RVE +NPN KL +YY +T 
Sbjct:    79 AVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVARVEMKNPNSKLVFYYGNTA 138

Query:    90 VEVTAGK-DKEIDLGTGSVPGFTQGTKNARSLKIETKT-DELVEDGMGPRLMSHHKSKDL 147
             V+++ G  + E  +G  ++ GF QG KN+ S+K+ET   ++LVE G+  RL +  +SKDL
Sbjct:   139 VDLSVGSGNDETGMGETTMNGFRQGPKNSTSVKVETTVKNQLVERGLAKRLAAKFQSKDL 198

Query:   148 XXXXXXXXXXXXXXQGRKTRPLAVKVTCGGQSLKALDK-MPKCTIHFLKW 196
                            G K   LAV + CGG SL  LD   PKC ++ LKW
Sbjct:   199 VINVVAKTKVGLGVGGIKIGMLAVNLRCGGVSLNKLDTDSPKCILNTLKW 248

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515102487 AT1G01453 "AT1G01453" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 70/175 (40%), Positives = 92/175 (52%)

Query:    28 AGALFYLWFDPKLPVFHLQSFSFRHFNVSV-KSDG--TYLHAATLTRVEARNPNGKLRYY 84
             A A+F+LW+ PKLPV  L SF   +FN S  KSD   ++L A T + ++ RNPNGKL +Y
Sbjct:    88 AVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTTSVLDFRNPNGKLTFY 147

Query:    85 YRHTDVEVTAG-KDKEIDLGTGSVPGFTQGTKNARSLKIETKTDEL-VEDGMGPRLMSHH 142
             Y  TDV V  G KD E +L +  V GF +   N  ++ + T   +  V+D    RL    
Sbjct:   148 YGDTDVAVILGEKDFETNLESTKVKGFIEKPGNRTAVIVPTTVRKRQVDDPTAKRLQVEL 207

Query:   143 KSKDLXXXXXXXXXXXXXXQGRKTRPLAVKVTCGGQSLKALD-KMPKCTIHFLKW 196
             KSK L                RK   + V + CGG  L+ LD KM +CTI  LKW
Sbjct:   208 KSKKLLVTVTAKTKVGLAVGSRKIVTVGVSLRCGGVILQTLDSKMAQCTIKMLKW 262

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125093 AT4G01110 "AT4G01110" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 68/174 (39%), Positives = 93/174 (53%)

Query:    30 ALFYLWFDPKLPVFHLQSFSFRHFNVS--VKSDG-TYLHAATLTRVEARNPNGKLRYYYR 86
             ++F+L++ P+LPV  L SF   +FN S     DG + L A    R++ RNPNGKLRYYY 
Sbjct:    84 SVFFLYYSPRLPVVRLSSFRVSNFNFSGGKAGDGLSQLTAEATARLDFRNPNGKLRYYYG 143

Query:    87 HTDVEVTAGKDK-EIDLGTGSVPGFTQ--GTKNARSLKIETKTDELVEDGMGPRLMSHHK 143
             + DV V+ G+D  E  LG+  V GF +  G +    + I+ K  + V+D    RL +  K
Sbjct:   144 NVDVAVSVGEDDFETSLGSTKVKGFVEKPGNRTVVIVPIKVKKQQ-VDDPTVKRLRADMK 202

Query:   144 SKDLXXXXXXXXXXXXXXQGRKTRPLAVKVTCGGQSLKALD-KMPKCTIHFLKW 196
             SK L                RK   + V ++CGG  L+ LD KM KCTI  LKW
Sbjct:   203 SKKLVVKVMAKTKVGLGVGRRKIVTVGVTISCGGVRLQTLDSKMSKCTIKMLKW 256

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2007968 AT1G17620 "AT1G17620" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 44/156 (28%), Positives = 67/156 (42%)

Query:    28 AGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRH 87
             A A+ YL + P+ P F +        N +       L  A    V ARNPN  + + Y  
Sbjct:    79 ASAVVYLIYRPQRPSFTVSELKISTLNFT---SAVRLTTAISLSVIARNPNKNVGFIYDV 135

Query:    88 TDV---EVTAGKDKEIDLGTGSVPGFTQGTKNARSLK--IETKTDELVEDGMGPRLMSHH 142
             TD+   + + G D ++ +G G++  F+ G KN  +L+  I +  DEL E   G +L    
Sbjct:   136 TDITLYKASTGGDDDVVIGKGTIAAFSHGKKNTTTLRSTIGSPPDELDEISAG-KLKGDL 194

Query:   143 KSKDLXXXXXXXXXXXXXXQGR-KTRPLAVKVTCGG 177
             K+K                 G  KT    ++VTC G
Sbjct:   195 KAKKAVAIKIVLNSKVKVKMGALKTPKSGIRVTCEG 230

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2018531 AT1G65690 "AT1G65690" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 7.8e-05, P = 7.8e-05
 Identities = 30/93 (32%), Positives = 44/93 (47%)

Query:    31 LFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDV 90
             + YL F PKLP + +       F ++  S  T     T+T   A+NPN K+  YY     
Sbjct:    86 ILYLVFKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTIT---AKNPNEKIGIYYEDGS- 141

Query:    91 EVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIE 123
             ++T     E  L  GS+P F QG +N   + +E
Sbjct:   142 KITVWY-MEHQLSNGSLPKFYQGHENTTVIYVE 173

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006865 "amino acid transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2059274 AT2G27080 "AT2G27080" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 0.00012, P = 0.00012
 Identities = 35/148 (23%), Positives = 63/148 (42%)

Query:    30 ALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYY-RHT 88
             A+ YL + P+ P + ++ FS    N++  S    +  +    V +RN NGK+  YY + +
Sbjct:    94 AVLYLIYRPEAPKYSIEGFSVSGINLNSTSP---ISPSFNVTVRSRNGNGKIGVYYEKES 150

Query:    89 DVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDEL-VEDGMGPRLMSHHKSKDL 147
              V+V      ++D+  G +P F Q  KN   +K+     ++ +  GM   + +    K +
Sbjct:   151 SVDVYYN---DVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTV 207

Query:   148 XXXXXXXXXXXXXXQGRKTRPLAVKVTC 175
                              KT  + V V C
Sbjct:   208 PFKLKIKAPVKIKFGSVKTWTMIVNVDC 235

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2020163 AT1G54540 "AT1G54540" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 0.00020, P = 0.00020
 Identities = 32/95 (33%), Positives = 44/95 (46%)

Query:    28 AGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRH 87
             A A+ Y  F PKLP + + S   R  N+ +  D + L A     + ARNPN K+  YY  
Sbjct:    71 AVAVVYFVFHPKLPSYEVNSL--RVTNLGINLDLS-LSAEFKVEITARNPNEKIGIYYEK 127

Query:    88 TDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKI 122
                 +    DK   L  G +P F QG +N   L +
Sbjct:   128 GG-HIGVWYDKT-KLCEGPIPRFYQGHRNVTKLNV 160

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143064 EMB3135 "AT5G11890" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00040, P = 0.00040
 Identities = 39/157 (24%), Positives = 60/157 (38%)

Query:    28 AGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVE--ARNPNGKLRYYY 85
             A    Y+ + P+ P F + S      N++  SD +  H ++       + NPN  L + Y
Sbjct:   100 AATAMYVIYHPRPPSFSVPSIRISRVNLTTSSDSSVSHLSSFFNFTLISENPNQHLSFSY 159

Query:    86 RHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDELVEDGMGPRLMSHHKSK 145
                 V V + K   + LG G+VP F     N  S      T     + + P    H +S 
Sbjct:   160 DPFTVTVNSAKSGTM-LGNGTVPAFFSDNGNKTSFHGVIATSTAARE-LDPDEAKHLRS- 216

Query:   146 DLXXXXXXXXXXXXXX----QGR-KTRPLAVKVTCGG 177
             DL                   G+ K+  + +KVTC G
Sbjct:   217 DLTRARVGYEIEMRTKVKMIMGKLKSEGVEIKVTCEG 253


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       160   0.00097  106 3  11 22  0.36    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  147 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.49u 0.10s 13.59t   Elapsed:  00:00:01
  Total cpu time:  13.49u 0.10s 13.59t   Elapsed:  00:00:01
  Start:  Mon May 20 23:02:25 2013   End:  Mon May 20 23:02:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.49
smart00769	100	WHy Water Stress and Hypersensitive response.	98.56
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	98.11
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	98.07
COG5608	161	LEA14-like dessication related protein [Defense me	97.59
PLN03160	219	uncharacterized protein; Provisional	95.72
TIGR02588	122	conserved hypothetical protein TIGR02588. The func	91.13
KOG3950	292	consensus Gamma/delta sarcoglycan [Cytoskeleton]	85.77
PF14155	112	DUF4307: Domain of unknown function (DUF4307)	84.2

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=247.98  Aligned_cols=182  Identities=18%  Similarity=0.307  Sum_probs=153.4

Q ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHhheeeEeecCCcEEEeeeeEEeeEEeecCC-CCceeeEEEEEEEEEeCCCCe
Q 042256            2 RRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKS-DGTYLHAATLTRVEARNPNGK   80 (196)
Q Consensus         2 ~~~~~~~~~c~c~~~~~~~li~l~~~~~~i~~lv~rP~~P~f~v~~~~v~~f~~~~~~-~~~~l~~~~~~~l~v~NPN~~   80 (196)
                      +||++|++||+|++.++++   +++++++++|++||||+|+|+|+++++++|++++.+ .+..+|++++++++++|||. 
T Consensus        31 ~~r~~~~~c~~~~~a~~l~---l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-  106 (219)
T PLN03160         31 TRRRNCIKCCGCITATLLI---LATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-  106 (219)
T ss_pred             cccccceEEHHHHHHHHHH---HHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-
Confidence            3455566676666666443   356677889999999999999999999999997532 24678888999999999996 


Q ss_pred             eEEEEeCcEEEEEEecCCCeeeecccCCCeeecCCCceEEEEEEe-eccccCCcchhHhhccccCCcEEEEEEEEEEEEE
Q 042256           81 LRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETK-TDELVEDGMGPRLMSHHKSKDLVVNVVVKTTVAV  159 (196)
Q Consensus        81 ~~i~Y~~~~~~v~y~~~~~~~lg~~~~p~f~q~~~~~~~v~~~~~-~~~~l~~~~~~~l~~d~~~g~v~l~v~v~~~~r~  159 (196)
                      ++|+|++++++++|+   |+.+|++.+|+|+|++++++.+.+++. .+..+..  ..+|.+|..+|.++|++++++++++
T Consensus       107 ~~~~Y~~~~~~v~Y~---g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkV  181 (219)
T PLN03160        107 ASFKYSNTTTTIYYG---GTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKV  181 (219)
T ss_pred             eeEEEcCeEEEEEEC---CEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEE
Confidence            899999999999999   999999999999999999999999887 4443332  3578999999999999999999999


Q ss_pred             EEeEEEecCeEEEEEeCceeecccCC---CCCceeeE
Q 042256          160 IVQGRKTRPLAVKVTCGGQSLKALDK---MPKCTIHF  193 (196)
Q Consensus       160 kvg~~~s~~~~~~v~C~~v~v~~~~~---~~~C~~~~  193 (196)
                      ++|++.++++.++++|+ +.++..+.   +++|..++
T Consensus       182 kv~~i~k~~v~~~v~C~-v~V~~~~~~i~~~~C~~~~  217 (219)
T PLN03160        182 KILKIIKKHVVVKMNCT-MTVNITSQAIQGQKCKRHV  217 (219)
T ss_pred             EEEEEEEEEEEEEEEeE-EEEECCCCEEeccEecccc
Confidence            99999999999999997 88887654   78998874

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.49  E-value=1.3e-13  Score=96.53  Aligned_cols=97  Identities=19%  Similarity=0.260  Sum_probs=75.0

Q ss_pred             EEEEeCCCCeeEEEEeCcEEEEEEecCCCeeee-cccCCCeeecCCCceEEEEEEe-eccccCCcchhHhhccccCCcEE
Q 042256           71 RVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLG-TGSVPGFTQGTKNARSLKIETK-TDELVEDGMGPRLMSHHKSKDLV  148 (196)
Q Consensus        71 ~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg-~~~~p~f~q~~~~~~~v~~~~~-~~~~l~~~~~~~l~~d~~~g~v~  148 (196)
                      +++++|||. ++++|++++++++|.   |..+| ....|+|.|++++++.+.+.+. +...+    .+.+.++. +|..+
T Consensus         1 ~l~v~NPN~-~~i~~~~~~~~v~~~---g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~   71 (101)
T PF03168_consen    1 TLSVRNPNS-FGIRYDSIEYDVYYN---GQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVP   71 (101)
T ss_dssp             EEEEEESSS-S-EEEEEEEEEEEES---SSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSC
T ss_pred             CEEEECCCc-eeEEEeCEEEEEEEC---CEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccc
Confidence            589999997 999999999999999   99999 6679999999999999999887 54443    45666666 67788


Q ss_pred             EEEEEEEEEEEEE-eEEEecCeEEEEEeC
Q 042256          149 VNVVVKTTVAVIV-QGRKTRPLAVKVTCG  176 (196)
Q Consensus       149 l~v~v~~~~r~kv-g~~~s~~~~~~v~C~  176 (196)
                      +++.+++++++++ +.....++.+.++|+
T Consensus        72 ~~v~~~~~g~~~v~~~~~~~~~~v~~~~~  100 (101)
T PF03168_consen   72 FDVTYRIRGTFKVLGTPIFGSVRVPVSCE  100 (101)
T ss_dssp             EEEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred             eEEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence            8888889999995 443334566666664

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=98.56  E-value=8.2e-07  Score=62.36  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=64.1

Q ss_pred             ceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCC-CeeecCCCceEEEEEEe-eccccCCcchhHhh
Q 042256           62 TYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVP-GFTQGTKNARSLKIETK-TDELVEDGMGPRLM  139 (196)
Q Consensus        62 ~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p-~f~q~~~~~~~v~~~~~-~~~~l~~~~~~~l~  139 (196)
                      ..++.++.+++.++||| .+++.|+..+.+++|+   |..+|++..+ +...++++++.+.+++. ..     .....+.
T Consensus        11 ~~~~~~~~l~l~v~NPN-~~~l~~~~~~y~l~~~---g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~-----~~~~~~~   81 (100)
T smart00769       11 SGLEIEIVLKVKVQNPN-PFPIPVNGLSYDLYLN---GVELGSGEIPDSGTLPGNGRTVLDVPVTVNL-----FLAEALI   81 (100)
T ss_pred             cceEEEEEEEEEEECCC-CCccccccEEEEEEEC---CEEEEEEEcCCCcEECCCCcEEEEEEEEeeh-----hHhHHHH
Confidence            35678899999999999 7899999999999999   9999999985 79999999999888876 31     1223444


Q ss_pred             ccccCC-cEEEEEEE
Q 042256          140 SHHKSK-DLVVNVVV  153 (196)
Q Consensus       140 ~d~~~g-~v~l~v~v  153 (196)
                      .++.+| .++++++.
T Consensus        82 ~~l~~~~~~~y~l~g   96 (100)
T smart00769       82 WHIANGEEIPYRLDG   96 (100)
T ss_pred             HhhccCCCccEEEEE
Confidence            555555 34444443

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=98.11  E-value=1.9e-05  Score=67.11  Aligned_cols=83  Identities=24%  Similarity=0.287  Sum_probs=54.1

Q ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHhheeeEeecCCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCee
Q 042256            2 RRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKL   81 (196)
Q Consensus         2 ~~~~~~~~~c~c~~~~~~~li~l~~~~~~i~~lv~rP~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~   81 (196)
                      ++|++|.|+++|+++.|++|+++.+++++    +|--.+|--.|+-..+++.-.+      .-..-|++++.+.||| -+
T Consensus       294 r~r~~~~r~~~c~~~~i~~lL~ig~~~gF----v~AttKpL~~v~v~~I~NVlaS------~qELmfdl~V~A~NPn-~~  362 (387)
T PF12751_consen  294 RQRSWFSRFASCIYLSILLLLVIGFAIGF----VFATTKPLTDVQVVSIQNVLAS------EQELMFDLTVEAFNPN-WF  362 (387)
T ss_pred             ccccHHhhhhHHHHHHHHHHHHHHHHHHh----hhhcCcccccceEEEeeeeeec------cceEEEeeEEEEECCC-eE
Confidence            56777888888887776554433333332    3333444333444444443332      2356789999999999 78


Q ss_pred             EEEEeCcEEEEEEe
Q 042256           82 RYYYRHTDVEVTAG   95 (196)
Q Consensus        82 ~i~Y~~~~~~v~y~   95 (196)
                      .|..++.+++|+.+
T Consensus       363 ~V~I~d~dldIFAK  376 (387)
T PF12751_consen  363 TVTIDDMDLDIFAK  376 (387)
T ss_pred             EEEeccceeeeEec
Confidence            99999999999987

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=98.07  E-value=0.0011  Score=53.23  Aligned_cols=85  Identities=14%  Similarity=0.249  Sum_probs=62.8

Q ss_pred             EeecCCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCCCe-eec
Q 042256           35 WFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGF-TQG  113 (196)
Q Consensus        35 v~rP~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p~f-~q~  113 (196)
                      .+=|+.-  .|.++++....+.-+.+..++..++.-.+.++||| .+.+.-.+.++++.|.   ...+|.+..... ..+
T Consensus        95 FLfPRsV--~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~~---~~VVG~~~~~~~~~I~  168 (238)
T PF07092_consen   95 FLFPRSV--TVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPN-FYPVTVTNLSIQVLYM---KTVVGKGKNSNITVIG  168 (238)
T ss_pred             EEeCcEE--EEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCC-EEEEEEEeEEEEEEEE---EeEEeeeEecceEEec
Confidence            4446655  44555555555544333457888899999999999 8899999999999999   889999876644 567


Q ss_pred             CCCceEEEEEEe
Q 042256          114 TKNARSLKIETK  125 (196)
Q Consensus       114 ~~~~~~v~~~~~  125 (196)
                      |++.+.+..++.
T Consensus       169 Prs~~q~~~tV~  180 (238)
T PF07092_consen  169 PRSSKQVNYTVK  180 (238)
T ss_pred             ccCCceEEEEee
Confidence            787777766655

The function of this family is unknown.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=97.59  E-value=0.0045  Score=46.27  Aligned_cols=108  Identities=15%  Similarity=0.226  Sum_probs=74.8

Q ss_pred             CCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeeccc-CCCeeecCCCc
Q 042256           39 KLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGS-VPGFTQGTKNA  117 (196)
Q Consensus        39 ~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~-~p~f~q~~~~~  117 (196)
                      ++|...--.+..-...        .....+-.++.++||| -+++-....+.+++-.   |.++|.+. ..++..+|++.
T Consensus        31 ~~p~ve~~ka~wGkvt--------~s~~EiV~t~KiyNPN-~fPipVtgl~y~vymN---~Iki~eG~~~k~~~v~p~S~   98 (161)
T COG5608          31 KKPGVESMKAKWGKVT--------NSETEIVGTLKIYNPN-PFPIPVTGLQYAVYMN---DIKIGEGEILKGTTVPPNSR   98 (161)
T ss_pred             CCCCceEEEEEEEEEe--------ccceEEEEEEEecCCC-CcceeeeceEEEEEEc---ceEeeccccccceEECCCCe
Confidence            6776555555554443        2345688999999999 6899999999999998   99999997 67799999999


Q ss_pred             eEEEEEEe-eccccCCcchhHhhccccCCc-EEEEEEEEEEEEEEEeEE
Q 042256          118 RSLKIETK-TDELVEDGMGPRLMSHHKSKD-LVVNVVVKTTVAVIVQGR  164 (196)
Q Consensus       118 ~~v~~~~~-~~~~l~~~~~~~l~~d~~~g~-v~l~v~v~~~~r~kvg~~  164 (196)
                      ..+.+.+. +.-.+.    +.+...+.+|. -++++++  +..+++|..
T Consensus        99 ~tvdv~l~~d~~~~k----e~w~~hi~ngErs~Ir~~i--~~~v~vg~~  141 (161)
T COG5608          99 ETVDVPLRLDNSKIK----EWWVTHIENGERSTIRVRI--KGVVKVGGM  141 (161)
T ss_pred             EEEEEEEEEehHHHH----HHHHHHhhccCcccEEEEE--EEEEEEccE
Confidence            99988877 433332    34555666674 2333333  333445443

>PLN03160 uncharacterized protein; Provisional

Probab=95.72  E-value=0.1  Score=41.75  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=12.5

Q ss_pred             CCCCCccccchhHHHHHHHHHHH
Q 042256            1 RRRKSCCRVCCCCFCFFIVLLII   23 (196)
Q Consensus         1 ~~~~~~~~~~c~c~~~~~~~li~   23 (196)
                      ||++.+||.|+|.++.++.++++
T Consensus        33 r~~~~~c~~~~~a~~l~l~~v~~   55 (219)
T PLN03160         33 RRNCIKCCGCITATLLILATTIL   55 (219)
T ss_pred             cccceEEHHHHHHHHHHHHHHHH
Confidence            45555566666665555544443

>TIGR02588 conserved hypothetical protein TIGR02588

Probab=91.13  E-value=0.64  Score=33.63  Aligned_cols=49  Identities=16%  Similarity=0.270  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhheeeEe--ecCCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCC
Q 042256           20 LLIILIVIAGALFYLWF--DPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPN   78 (196)
Q Consensus        20 ~li~l~~~~~~i~~lv~--rP~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN   78 (196)
                      .++++++++++++|.++  +++.|.+++......+-          ....+-+-++++|--
T Consensus        11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~----------~~gqyyVpF~V~N~g   61 (122)
T TIGR02588        11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM----------QTGQYYVPFAIHNLG   61 (122)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE----------eCCEEEEEEEEEeCC
Confidence            34455666778887776  46789998887776542          233456677888855

The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.

>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]

Probab=85.77  E-value=2  Score=34.78  Aligned_cols=20  Identities=55%  Similarity=0.851  Sum_probs=15.3

Q ss_pred             eeeEEEEEEEEEeCCCCeeE
Q 042256           63 YLHAATLTRVEARNPNGKLR   82 (196)
Q Consensus        63 ~l~~~~~~~l~v~NPN~~~~   82 (196)
                      .+...=++++.++|||..+.
T Consensus       105 ~~~S~rnvtvnarn~~g~v~  124 (292)
T KOG3950|consen  105 YLQSARNVTVNARNPNGKVT  124 (292)
T ss_pred             EEEeccCeeEEccCCCCcee
Confidence            44455589999999998774

>PF14155 DUF4307: Domain of unknown function (DUF4307)

Probab=84.20  E-value=13  Score=26.49  Aligned_cols=25  Identities=12%  Similarity=0.337  Sum_probs=12.9

Q ss_pred             CCeeeeccc--CCCeeecCCCceEEEEEEe
Q 042256           98 KEIDLGTGS--VPGFTQGTKNARSLKIETK  125 (196)
Q Consensus        98 ~~~~lg~~~--~p~f~q~~~~~~~v~~~~~  125 (196)
                      ++..+|.-.  +|+   +..++..+..++.
T Consensus        73 d~aeVGrreV~vp~---~~~~~~~~~v~v~   99 (112)
T PF14155_consen   73 DGAEVGRREVLVPP---SGERTVRVTVTVR   99 (112)
T ss_pred             CCCEEEEEEEEECC---CCCcEEEEEEEEE
Confidence            367777654  565   3333444445544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	9e-04

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 2   RRKSCCRVCCCCFCFFIVLLIILIVIAGAL 31
           + K+  +      C  I+ +II   I G  
Sbjct: 79  QSKARRKKIMIIICCVILGIIIASTIGGIF 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.3
1xo8_A	151	AT1G01470; structural genomics, protein structure	98.07
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	97.98

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.30  E-value=2.8e-06  Score=64.44  Aligned_cols=75  Identities=12%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             CCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCC-CeeecCCCc
Q 042256           39 KLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVP-GFTQGTKNA  117 (196)
Q Consensus        39 ~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p-~f~q~~~~~  117 (196)
                      +.|++++.++++.+++.        ...++.+.++++||| .+.+.+..++.++.-.   |..++++..| ++..++.++
T Consensus        43 ~~PeV~v~~v~~~~~~l--------~~~~~~l~LrV~NPN-~~pLpi~gi~Y~L~vn---G~~lasG~s~~~~tIpa~g~  110 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTR--------DGVDYHAKVSVKNPY-SQSIPICQISYILKSA---TRTIASGTIPDPGSLVGSGT  110 (174)
T ss_dssp             CCCEEEEEEEEEEEECS--------SSEEEEEEEEEEECS-SSCCBCCSEEEEEEES---SSCEEEEEESCCCBCCSSEE
T ss_pred             CCCEEEEEEeEEecccc--------ceEEEEEEEEEECCC-CCCccccceEEEEEEC---CEEEEEEecCCCceECCCCc
Confidence            78999999999987754        357789999999999 6899999999999998   9999999876 588999999


Q ss_pred             eEEEEEEe
Q 042256          118 RSLKIETK  125 (196)
Q Consensus       118 ~~v~~~~~  125 (196)
                      +.+.+.+.
T Consensus       111 ~~v~Vpv~  118 (174)
T 1yyc_A          111 TVLDVPVK  118 (174)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99998876

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=98.07  E-value=2.4e-06  Score=63.44  Aligned_cols=101  Identities=15%  Similarity=0.145  Sum_probs=74.2

Q ss_pred             CCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCC-CeeecCCCc
Q 042256           39 KLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVP-GFTQGTKNA  117 (196)
Q Consensus        39 ~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p-~f~q~~~~~  117 (196)
                      +.|++++.++++.+++.        ...++.+.++++||| ..++.+..++.++.-.   |..++++..+ ++..+++++
T Consensus        20 ~~P~v~v~~v~~~~~~~--------~~~~~~~~l~V~NPN-~~~lpi~gi~y~l~vn---g~~lasG~~~~~~~ipa~g~   87 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNR--------DSVEYLAKVSVTNPY-SHSIPICEISFTFHSA---GREIGKGKIPDPGSLKAKDM   87 (151)
T ss_dssp             CSCCCBCSEEEECCCTT--------TEECEEEEEEEECSS-SSCCCCEEEEEEEESS---SSCEEEEEEEECCCCSSSSE
T ss_pred             CCCEEEEEEeEEeccCc--------ceeEEEEEEEEECCC-CCCcccccEEEEEEEC---CEEEEEEecCCCcEECCCCc
Confidence            67888998888876543        356799999999999 6799999999999888   9999999876 588899999


Q ss_pred             eEEEEEEe-eccccCCcchhHhhccc-cCCcEEEEEEEEEE
Q 042256          118 RSLKIETK-TDELVEDGMGPRLMSHH-KSKDLVVNVVVKTT  156 (196)
Q Consensus       118 ~~v~~~~~-~~~~l~~~~~~~l~~d~-~~g~v~l~v~v~~~  156 (196)
                      +.+.+.+. ....     ..++..++ ..+.++.+++++..
T Consensus        88 ~~v~vpv~v~~~~-----l~~~~~~l~~~~~i~Y~l~g~l~  123 (151)
T 1xo8_A           88 TALDIPVVVPYSI-----LFNLARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             EEEEECCCEEHHH-----HHHHHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEEEEEEEHHH-----HHHHHHhcccCCcccEEEEEEEE
Confidence            99888876 3211     22222332 23456666655444

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=97.98  E-value=8.9e-05  Score=53.94  Aligned_cols=88  Identities=10%  Similarity=0.186  Sum_probs=65.7

Q ss_pred             eEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeeccc-CCCeeecCCCceEEEEEEe-eccccCCcchhHhhccc
Q 042256           65 HAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGS-VPGFTQGTKNARSLKIETK-TDELVEDGMGPRLMSHH  142 (196)
Q Consensus        65 ~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~-~p~f~q~~~~~~~v~~~~~-~~~~l~~~~~~~l~~d~  142 (196)
                      ...+.+.+.+.||| .+++.++.++.+++..   |.++|++. -..+..++.+.+.+.+.+. +.-.+.+.    +.+.+
T Consensus        17 ~t~~~~~l~V~NPN-~~~l~i~gl~y~v~ln---g~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~----~~~hi   88 (136)
T 3but_A           17 QTEIVALAKVRNED-VVPIVVSGYHYTIEMN---GVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW----WVTHI   88 (136)
T ss_dssp             EEEEEEEEEEECCS-SSCEEEEEEEEEEEET---TEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH----HHHHH
T ss_pred             EEEEEEEEEEeCCC-CcceeeeceEEEEEEC---CEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH----HHHHh
Confidence            56789999999999 7899999999999999   99999997 6789999999889999988 65555543    33333


Q ss_pred             cCC-cEEEEEEEEEEEEEEEe
Q 042256          143 KSK-DLVVNVVVKTTVAVIVQ  162 (196)
Q Consensus       143 ~~g-~v~l~v~v~~~~r~kvg  162 (196)
                      .+| .-.+++++  ++++.++
T Consensus        89 ~nge~s~l~i~~--~~~l~v~  107 (136)
T 3but_A           89 ANGEKTKIRVAI--KPTIEIG  107 (136)
T ss_dssp             HTTSEEEEEEEE--EEEEECC
T ss_pred             hcCCceEEEEEE--EEEEEeC
Confidence            445 33343333  3344444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	98.17

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.17  E-value=4.2e-07  Score=65.78  Aligned_cols=77  Identities=16%  Similarity=0.189  Sum_probs=65.1

Q ss_pred             ecCCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCC-CeeecCC
Q 042256           37 DPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVP-GFTQGTK  115 (196)
Q Consensus        37 rP~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p-~f~q~~~  115 (196)
                      +=+.|++++.++++.+++.        ...++.++++++||| .+++.++..+.+++..   |..++++..+ ++..+++
T Consensus        18 ~~~kPev~l~~v~i~~v~~--------~~~~l~~~l~V~NPN-~~~l~i~~l~y~l~~~---g~~ia~G~~~~~~~ipa~   85 (151)
T d1xo8a_          18 AIPKPEGSVTDVDLKDVNR--------DSVEYLAKVSVTNPY-SHSIPICEISFTFHSA---GREIGKGKIPDPGSLKAK   85 (151)
T ss_dssp             CCCSCCCBCSEEEECCCTT--------TEECEEEEEEEECSS-SSCCCCEEEEEEEESS---SSCEEEEEEEECCCCSSS
T ss_pred             CCCCCeEEEEEEEeeeccc--------ceEEEEEEEEEECCC-CCceeeeeEEEEEEEC---CEEEEeEecCCCcEEcCC
Confidence            4467999999999887754        356789999999999 6799999999999998   9999999865 5788999


Q ss_pred             CceEEEEEEe
Q 042256          116 NARSLKIETK  125 (196)
Q Consensus       116 ~~~~v~~~~~  125 (196)
                      +++.+.+.++
T Consensus        86 ~~~~v~vpv~   95 (151)
T d1xo8a_          86 DMTALDIPVV   95 (151)
T ss_dssp             SEEEEEECCC
T ss_pred             CcEEEEEEEE
Confidence            9999988876